calc_all {samplr} | R Documentation |
Diagnostics Wrapper
Description
Calculates all diagnostic functions in the samplr package for a given chain. Optionally, plots them.
Usage
calc_all(
chain,
plot = TRUE,
max_freq = 0.1,
filter_freq = TRUE,
acf.alpha = 0.05,
acf.lag.max = 100
)
Arguments
chain |
Vector of n length, where n is the number of trials or sampler iterations |
plot |
Boolean. Whether to additionally plot the diagnostics. |
max_freq , filter_freq |
Additional parameters to calc_PSD. |
acf.alpha , acf.lag.max |
Additional parameters to calc_autocorr. |
Value
A list with all diagnostic calculations (a list of lists); and optionally a grid of plots.
Examples
set.seed(1)
chain1 <- sampler_mh(1, "norm", c(0,1), diag(1))
diagnostics <- calc_all(chain1[[1]])
names(diagnostics)
[Package samplr version 1.1.0 Index]