countSeqDiffs {evolved}R Documentation

Counting protein sequence differences

Description

countSeqDiffs counts the number of protein differences among two sequences of proteins within the same "ProteinSeq" object.

Usage

countSeqDiffs(x, taxon1, taxon2)

Arguments

x

A "ProteinSeq" object containing proteins from taxon1 and taxon2.

taxon1

A character giving the common name of the first species that will be compared. Must be a name present in x.

taxon2

A character giving the common name of the second species that will be compared. Must be a name present in x.

Value

A integer giving the number of protein differences between taxon1 and taxon2.

Author(s)

Matheus Januario, Dan Rabosky, Jennifer Auler

Examples

countSeqDiffs(cytOxidase, "human", "chimpanzee")

countSeqDiffs(cytOxidase, "human", "cnidaria")

countSeqDiffs(cytOxidase, "chimpanzee", "cnidaria")


[Package evolved version 1.0.0 Index]