plotProActiveResults {ProActive} | R Documentation |
Plot results of 'ProActive()' pattern-matching
Description
Plot read coverage of contigs/chunks with detected gaps and elevations and their associated pattern-match.
Usage
plotProActiveResults(pileup, ProActiveResults, elevFilter, saveFilesTo)
Arguments
pileup |
A .txt file containing mapped sequencing read coverages averaged over 100 bp windows/bins. |
ProActiveResults |
The output from 'ProActive()'. |
elevFilter |
Optional, only plot results with pattern-matches that achieved an elevation ratio (max/min) greater than the specified values. Default is no filter. |
saveFilesTo |
Optional, Provide a path to the directory you wish to save output to. A folder will be made within the provided directory to store results. |
Value
A list containing ggplot objects
Examples
ProActivePlots <- plotProActiveResults(sampleMetagenomePileup,
sampleMetagenomeResults)
[Package ProActive version 0.1.0 Index]