changewindowSize {ProActive} | R Documentation |
Change the pileup window size
Description
Re-averages windows of pileup files with 100bp windows to reduce pileup size.
Usage
changewindowSize(pileupSubset, windowSize, mode)
Arguments
pileupSubset |
A subset of the pileup that pertains only to the contig/chunk currently being assessed. |
windowSize |
The number of basepairs to average read coverage values over. Options are 100, 200, 500, 1000 ONLY. Default is 1000. |
mode |
Either "genome" or "metagenome" |
[Package ProActive version 0.1.0 Index]