sampleMetagenomeResults {ProActive} | R Documentation |
sampleMetagenomeResults
Description
Output of 'ProActiveDetect()' Report...
Usage
sampleMetagenomeResults
Format
## 'sampleMetagenomeResults' A list with 6 objects:
- SummaryTable
A table containing all pattern-matching classifications
- CleanSummaryTable
A table containing only gap and elevation pattern-match classifications (i.e. noPattern classifications removed)
- PatternMatches
A list object containing information needed to visualize the pattern-matches in 'plotProActiveResults()'
- FilteredOut
A table containing contigs/chunks that were filtered out for being too small or having too low read coverage
- Arguments
A list object containing arguments used for pattern-matching (windowSize, mode, chunkSize, chunkContigs)
- GeneAnnotTable
A table containing gene predictions associated with elevated or gapped regions in pattern-matches
Details
This data was generated by running 'ProActiveDetect()' on the sampleMetagenomePileup and sampleMetagenomegffTSV with default parameters.