plotsjSDMcoef {sjSDM} | R Documentation |
Internal coefficients plot
Description
Plotting coefficients returned by sjSDM model. This function only for model fitted by linear, fitted by DNN is not yet supported.
Usage
plotsjSDMcoef(object, wrap_col = NULL, group = NULL, col = NULL, slist = NULL)
Arguments
object |
a model fitted by |
wrap_col |
Scales argument passed to wrap_col |
group |
Define the taxonomic characteristics of a species, you need to provide a dataframe with column1 named “species” and column2 named “group”, default is NULL. For example, |
col |
Define colors for groups, default is NULL. |
slist |
Select the species you want to plot, default is all, parameter is not supported yet. |
Value
ggplot2 object
Author(s)
CAI Wang
Examples
## Not run:
library(sjSDM)
# simulate community:
com = simulate_SDM(env = 6L, species = 7L, sites = 100L)
# fit model:
model = sjSDM(Y = com$response,env = com$env_weights, iter = 2L, se = TRUE,
verbose = FALSE)
# normal plot
plot(model)
# colored by groups
species=c("sp1","sp2","sp3","sp4","sp5","sp6","sp7")
group=c("mammal","bird","fish","fish","mammal","amphibian","amphibian")
group = data.frame(species=species,group=group)
plot(model,group=group)
## End(Not run)
[Package sjSDM version 1.0.6 Index]