.get_clinical_pat_by_list_item {cbioportalR} | R Documentation |
Get clinical data by attribute, study ID and patient ID
Description
Get clinical data by attribute, study ID and patient ID
Usage
.get_clinical_pat_by_list_item(
study_id = NULL,
patient_id = NULL,
clinical_attribute = NULL,
base_url = NULL
)
Arguments
study_id |
A string indicating the study ID from which to pull data. If no study ID, will
guess the study ID based on your URL and inform. Only 1 study ID can be passed. If mutations/cna from
more than 1 study needed, see |
patient_id |
a cBioPortal patient_id |
clinical_attribute |
one or more clinical attributes for your study. If none provided, will return all attributes available for studies |
base_url |
The database URL to query
If |
Value
a dataframe of a specific clinical attribute
Examples
## Not run:
.get_clinical_pat_by_list_item(study_id = "msk_impact_2017",
patient_id = "P-0001453",
base_url = 'www.cbioportal.org/api')
## End(Not run)
[Package cbioportalR version 1.1.1 Index]