%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MBNMAtime
%global packver   0.2.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.6
Release:          1%{?dist}%{?buildtag}
Summary:          Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-rjags >= 4.8
BuildRequires:    R-CRAN-ggdist >= 2.4.0
BuildRequires:    R-CRAN-ggplot2 >= 2.2.1
BuildRequires:    R-CRAN-igraph >= 2.0.1.1
BuildRequires:    R-CRAN-zoo >= 1.8.8
BuildRequires:    R-CRAN-checkmate >= 1.8.5
BuildRequires:    R-CRAN-magrittr >= 1.5
BuildRequires:    R-CRAN-reshape2 >= 1.4.3
BuildRequires:    R-CRAN-crayon >= 1.3.4
BuildRequires:    R-CRAN-scales >= 1.0.0
BuildRequires:    R-CRAN-lspline >= 1.0.0
BuildRequires:    R-CRAN-R2jags >= 0.8.9
BuildRequires:    R-CRAN-dplyr >= 0.7.4
BuildRequires:    R-CRAN-Rdpack >= 0.10.1
BuildRequires:    R-CRAN-knitr 
BuildRequires:    R-grDevices 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-utils 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-png 
Requires:         R-CRAN-rjags >= 4.8
Requires:         R-CRAN-ggdist >= 2.4.0
Requires:         R-CRAN-ggplot2 >= 2.2.1
Requires:         R-CRAN-igraph >= 2.0.1.1
Requires:         R-CRAN-zoo >= 1.8.8
Requires:         R-CRAN-checkmate >= 1.8.5
Requires:         R-CRAN-magrittr >= 1.5
Requires:         R-CRAN-reshape2 >= 1.4.3
Requires:         R-CRAN-crayon >= 1.3.4
Requires:         R-CRAN-scales >= 1.0.0
Requires:         R-CRAN-lspline >= 1.0.0
Requires:         R-CRAN-R2jags >= 0.8.9
Requires:         R-CRAN-dplyr >= 0.7.4
Requires:         R-CRAN-Rdpack >= 0.10.1
Requires:         R-CRAN-knitr 
Requires:         R-grDevices 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-utils 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-png 

%description
Fits Bayesian time-course models for model-based network meta-analysis
(MBNMA) that allows inclusion of multiple time-points from studies.
Repeated measures over time are accounted for within studies by applying
different time-course functions, following the method of Pedder et al.
(2019) <doi:10.1002/jrsm.1351>. The method allows synthesis of studies
with multiple follow-up measurements that can account for time-course for
a single or multiple treatment comparisons. Several general time-course
functions are provided; others may be added by the user. Various
characteristics can be flexibly added to the models, such as correlation
between time points and shared class effects. The consistency of direct
and indirect evidence in the network can be assessed using unrelated mean
effects models and/or by node-splitting.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}