trace-package {trace} | R Documentation |
trace: Tandem Repeat Analysis by Capillary Electrophoresis
Description
A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) doi:10.1186/1752-0509-4-29).
Author(s)
Maintainer: Zachariah McLean zachariah.louis.mclean@gmail.com (ORCID) [copyright holder]
Authors:
Kevin Correia
Other contributors:
Andrew Jiang [contributor]
See Also
Useful links:
[Package trace version 0.6.0 Index]