extract_ladder_summary {trace} | R Documentation |
Extract ladder summary
Description
Extract a table summarizing the ladder models
Usage
extract_ladder_summary(fragments_trace_list, sort = FALSE)
Arguments
fragments_trace_list |
a list of fragments trace objects |
sort |
A logical statement for if the samples should be ordered by average ladder R-squared. |
Details
The ladder peaks are assigned using a custom algorithm that maximizes the fit of detected ladder peaks and given base-pair sizes. This function summarizes the R-squared values of these individual correlations.
Value
a dataframe of ladder quality information
Examples
fsa_list <- lapply(cell_line_fsa_list, function(x) x$clone())
find_ladders(fsa_list, show_progress_bar = FALSE)
extract_ladder_summary(fsa_list, sort = TRUE)
[Package trace version 0.6.0 Index]