extract_alleles {trace} | R Documentation |
Extract Modal Peaks
Description
Extracts modal peak information from each sample in a list of fragments.
Usage
extract_alleles(fragments_list)
Arguments
fragments_list |
A list of fragments_repeats objects containing fragment data. |
Value
A dataframe containing modal peak information for each sample
Examples
gm_raw <- trace::example_data
test_fragments <- peak_table_to_fragments(gm_raw,
data_format = "genemapper5",
dye_channel = "B",
min_size_bp = 400
)
find_alleles(
fragments_list = test_fragments,
peak_region_size_gap_threshold = 6,
peak_region_signal_threshold_multiplier = 1
)
extract_alleles(test_fragments)
[Package trace version 0.6.0 Index]