A C D E F G H I L M N O P Q R S T U V X Y misc
add_package_namespace | Add Package Namespace |
analyze | Analyze |
analyze_ready | Analyze |
analyze_ready.1536well_plate_t1 | Analyze |
analyze_ready.1536well_plate_t2 | Analyze |
analyze_ready.384well_plate | Analyze |
analyze_ready.96well_plate | Analyze |
analyze_ready.default | Analyze |
average_fluorescence_by_row_cycle | Capitalize |
capitalize | Capitalize |
check_broken_packages | Check Broken Packages |
check_dirt | Check Dirt |
check_package_usage | Check package or function Usage |
check_step | Steps Utils |
childtype | Child Type |
child_plate_type | Child Type |
child_plate_type.default | Child Type |
child_plate_type.normfluodbf_plate | Child Type |
clean_commas | DAT file data frame cleaner. |
clean_even_dat | DAT file wrangler. |
clean_odddat_optimus | DAT file wrangler. |
comma_cleaner | Comma Cleaner function. |
comment_out_lines | Comment Out |
dat_1 | dat_1. |
dat_2 | dat_2. |
dat_3 | dat_3. |
dat_4 | dat_4. |
dat_5 | dat_5. |
dat_6 | dat_6. |
dat_7 | dat_7. |
dat_col_names_horizontal | Attribute(s) naming function. |
dat_col_names_optimus | Attribute(s) naming function. |
dat_col_names_prime | Attribute(s) naming function. |
dat_col_names_rigid | Attribute(s) naming function. |
decimal_scaling | Normalizing Agents |
decimal_scaling_df | Normalizing Agents |
defineparams | Define Plate Parameters |
definestatus | Define Plate Status |
definesteps | Define Plate Steps |
define_params | Define Plate Parameters |
define_params.1536well_plate_t1 | Define Plate Parameters |
define_params.1536well_plate_t2 | Define Plate Parameters |
define_params.384well_plate | Define Plate Parameters |
define_params.96well_plate | Define Plate Parameters |
define_params.default | Define Plate Parameters |
define_status | Define Plate Status |
define_status.1536well_plate_t1 | Define Plate Status |
define_status.1536well_plate_t2 | Define Plate Status |
define_status.384well_plate | Define Plate Status |
define_status.96well_plate | Define Plate Status |
define_status.default | Define Plate Status |
define_steps | Define Plate Steps |
define_steps.1536well_plate_t1 | Define Plate Steps |
define_steps.1536well_plate_t2 | Define Plate Steps |
define_steps.384well_plate | Define Plate Steps |
define_steps.96well_plate | Define Plate Steps |
define_steps.default | Define Plate Steps |
define_steps.normfluodbf_plate | Define Plate Steps |
demo | Run the shiny App In addition to the functions provided in this package, the 'normfluodbf' package also provides an interactive tool that can be used to analyze liposome flux assay data more easily. The tool will be launched in a web browser. |
detectoutliers | Detect Outliers |
detect_outliers_cn | Detect Outliers |
detect_outliers_time_cn | Detect Outliers |
dirty | Status |
dirty<- | Status |
dirutils | Directory Utils |
empty_plate | Plate |
find_known_liposome_dat_file | Directory Utils |
find_known_liposome_dbf_file | Directory Utils |
formatplatedata | Format Plate Data |
format_plate_data | Format Plate Data |
format_plate_data.1536well_plate_t1 | Format Plate Data |
format_plate_data.1536well_plate_t2 | Format Plate Data |
format_plate_data.384well_plate | Format Plate Data |
format_plate_data.96well_plate | Format Plate Data |
format_plate_data.default | Format Plate Data |
getfilename | Get File Name(s) |
get_common_dat_names | Get File Name(s) |
get_dat_common_name | Get File Name(s) |
get_dat_file_name | Get File Name(s) |
get_dbf_file_name | Get File Name(s) |
get_status_value | Define Plate Status |
get_step_key_by_index | Steps Utils |
get_wells_used | Wells Used |
globalcache | Globals Cache |
has_step | Steps Utils |
init_plate | Plate |
isnormalized | Is Normalized |
is_dir | Directory Utils |
is_file | Directory Utils |
is_normalized | Is Normalized |
is_plate_dirty | Status |
launch | Run the shiny App checking dependencies in R code ... WARNING In addition to the functions provided in this package, the 'normfluodbf' package also provides an interactive tool that can be used to analyze liposome flux assay data more easily. The tool will be launched in a web browser. |
liposomes_214 | liposomes_214. |
liposomes_215 | liposomes_215. |
liposomes_216 | liposomes_216. |
liposomes_218 | liposomes_218. |
liposomes_221 | liposomes_221. |
liposomes_227 | liposomes_227. |
liposome_fluor_dbfs | Cleans and Normalizes DBF files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
list_dats | Directory Utils |
list_dbfs | Directory Utils |
loadplatedata | Load Plate Data |
loadplatemeta | Load Plate Meta |
load_plate_data | Load Plate Data |
load_plate_data<- | Load Plate Data |
load_plate_meta | Load Plate Meta |
load_plate_meta<- | Load Plate Meta |
load_rds_plate | Save and Load Plate |
log_transformation | Normalizing Agents |
min_max_norm | Normalizing Agents |
min_max_norm_df | Normalizing Agents |
min_max_norm_percent | Normalizing Agents |
min_max_norm_percent_df | Normalizing Agents |
modifyplatedata | Modify Plate Data |
modify_plate_data | Modify Plate Data |
modify_plate_data.1536well_plate_t1 | Modify Plate Data |
modify_plate_data.1536well_plate_t2 | Modify Plate Data |
modify_plate_data.384well_plate | Modify Plate Data |
modify_plate_data.96well_plate | Modify Plate Data |
modify_plate_data.default | Modify Plate Data |
move_file | Move File |
multiplot | Multiplot |
name | Plate Name |
name<- | Plate Name |
new_plate | Plate |
next_step | Steps Pipeline |
normalize | Normalize |
normalize.1536well_plate_t1 | Normalize |
normalize.1536well_plate_t2 | Normalize |
normalize.384well_plate | Normalize |
normalize.96well_plate | Normalize |
normalize.default | Normalize |
normalizebywell | Normalize by Well |
normalize_by_well | Normalize by Well |
normalize_by_well.1536well_plate_t1 | Normalize by Well |
normalize_by_well.1536well_plate_t2 | Normalize by Well |
normalize_by_well.384well_plate | Normalize by Well |
normalize_by_well.96well_plate | Normalize by Well |
normalize_by_well.default | Normalize by Well |
normalize_dataframe | Normalize |
normalizingagents | Normalizing Agents |
normfluodat | Cleans and normalizes DAT files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
normfluodatfull | Cleans and normalizes DAT files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
normfluodatlite | Cleans and normalizes DAT files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
normfluodbf | Cleans and Normalizes DBF files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
normfluodbfplots | Plot Plate - Favorite is Fluostar style |
normfluordat | Cleans and normalizes DAT files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
normfluordbf | Cleans and Normalizes DBF files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
norm_tidy_dbf | Cleans and Normalizes DBF files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH). |
norm_z | Normalizing Agents |
norm_z_df | Normalizing Agents |
open_testfile | Test Boilerplate |
quiet | Quiet |
removeoutliers | Outliers |
remove_leading_zero | Format Well Names |
remove_outliers | Outliers |
remove_outliers.1536well_plate_t1 | Outliers |
remove_outliers.1536well_plate_t2 | Outliers |
remove_outliers.384well_plate | Outliers |
remove_outliers.96well_plate | Outliers |
remove_outliers.default | Outliers |
replace_word_in_file | Replace Word |
resample_dat | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_alt | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_alt | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_alt_bfv | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_alt_bf_na | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_alt_na | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_naretainer | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_optimus | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_optimus_backend | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_scale_optimus_na | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_dat_vect | A function to create an attribute or column for each sample loaded into the microplate wells. |
resample_vect_scale | A function to create an attribute or column for each sample loaded into the microplate wells. |
reset_plate | Plate |
roundfluor | Normalizing Agents |
run_steps | Steps Pipeline |
sampledata | Get Development Data |
sample_data_dir | Get Development Data |
sample_data_file | Get Development Data |
saveloadutils | Save and Load Plate |
save_plate | Save and Load Plate |
save_rds_plate | Save and Load Plate |
setsteps | Set Plate Steps |
setup_plate | Plate |
set_assiette_type | Set The Plate Types |
set_default_params | Define Plate Parameters |
set_default_status | Define Plate Status |
set_default_steps | Define Plate Steps |
set_plate_type | Set The Child Plate Type |
set_plate_version | Plate Version |
status | Status |
status<- | Status |
step | Steps Utils |
steps | Set Plate Steps |
steps<- | Set Plate Steps |
stepspipeline | Steps Pipeline |
stepsutils | Steps Utils |
steps_complete | Steps Utils |
step_begin | Steps Utils |
step_end | Steps Utils |
step_name | Steps Utils |
test_boilerplate | Test Boilerplate |
type | Plate Type |
update_status_list | Define Plate Status |
update_steps_list | Define Plate Steps |
uploadplatedata | Upload Plate Data |
upload_data | Upload Plate Data |
upload_data.1536well_plate_t1 | Upload Plate Data |
upload_data.1536well_plate_t2 | Upload Plate Data |
upload_data.384well_plate | Upload Plate Data |
upload_data.96well_plate | Upload Plate Data |
upload_data.default | Upload Plate Data |
use_initialized_plate | Plate |
use_setup_plate | Plate |
var_str | Save and Load Plate |
xycoordinates | Plot Coordinates |
x_var_one | Plot Coordinates |
x_var_one<- | Plot Coordinates |
x_var_one_label | Plot Coordinates |
x_var_one_label<- | Plot Coordinates |
x_var_two | Plot Coordinates |
x_var_two<- | Plot Coordinates |
x_var_two_label | Plot Coordinates |
x_var_two_label<- | Plot Coordinates |
y_var | Plot Coordinates |
y_var<- | Plot Coordinates |
%there% | The %there% operator |
.next_step | Steps Pipeline |
.step_name | Steps Utils |