make_seurat_annot {SlideCNA} | R Documentation |
Creation of Seurat object
Description
This function takes in raw counts (and potentially meta data) to make a Seurat object and process it
Usage
make_seurat_annot(
cb,
md = NULL,
seed_FindClusters = 0,
seed_RunTSNE = 1,
seed_RunUMAP = 42
)
Arguments
cb |
sparse counts matrix (genes x cells/beads) |
md |
data.frame of meta data for cells/beads if specific annotations known |
seed_FindClusters |
seed number for FindCLusters |
seed_RunTSNE |
seed number for RunTSNE |
seed_RunUMAP |
seed number for RunUMAP |
Value
A Seurat object with specific Seurat features run
[Package SlideCNA version 0.1.0 Index]