quantile_plot {SlideCNA} | R Documentation |
Plot CNV score quantiles per bin and per chromosome
Description
This function colors and plots each bin by its CNV score quantiles (min, 1st quartile, median, 3rd quartile, max) on spatial coordinates for each chromosome
Usage
quantile_plot(
cnv_data,
cluster_label = "seurat_clusters",
text_size,
title_size,
legend_height_bar,
plot_directory
)
Arguments
cnv_data |
list object of cnv data from SlideCNA::prep_cnv_dat() |
cluster_label |
character string of which column name to keep |
text_size |
integer of text size for ggplot |
title_size |
integer of title size for ggplot |
legend_height_bar |
integer of bar height of legend for ggplot |
plot_directory |
output plot directory path |
Value
None
[Package SlideCNA version 0.1.0 Index]