bin_metadata {SlideCNA} | R Documentation |
Spatio-molecular binning of relative expression intensities
Description
This function combines metadata with binned relative expression intensities
Usage
bin_metadata(
md,
dat,
avg_bead_per_bin = 12,
pos = TRUE,
pos_k = 55,
ex_k = 1,
hc_function = "ward.D2",
plot_directory
)
Arguments
md |
data.table of metadata of each bead |
dat |
data.table of smoothed relative expression intensities |
avg_bead_per_bin |
integer of average number of beads there should be per bin |
pos |
TRUE if doing spatial and expressional binning, FALSE if just expressional binning |
pos_k |
positional weight |
ex_k |
expressional weight |
hc_function |
hierarchical clustering function |
plot_directory |
output plot directory path |
Value
A data.table of bead metadata combined with binned expression intensities for all genes for all beads
[Package SlideCNA version 0.1.0 Index]