scale_nUMI {SlideCNA} | R Documentation |
Scale for nUMI (UMI Count) to generate CNV scores
Description
This function re-scales expression intensities to be in a smaller range, normalizes for nUMI per bin, and subtracts reference bead signal
Usage
scale_nUMI(dat_bin, thresh_hard = FALSE)
Arguments
dat_bin |
data.table of relative expression intensities per bin |
thresh_hard |
TRUE if using strict thresholds for expression thresholds and FALSE if adjusting thresholds based on 1 + or - the mean of absolute min and max values |
Value
data.table of CNV scores per bin
[Package SlideCNA version 0.1.0 Index]