scalefit {SlideCNA} | R Documentation |
Subfunction for scale_nUMI that normalizes a given bin for UMI count and centers the mean CNV score at 1
Description
This function re-scales expression intensities to be in a smaller range, normalizes for nUMI per bin, and centers the CNV scores to have a mean of 1
Usage
scalefit(obj, nbin, start, end)
Arguments
obj |
data.table of relative expression intensities per bin |
nbin |
nUMIs in that specific bin |
start |
lower bound of CNV scores |
end |
upper bound of CNV scores |
Value
vector of adjusted CNV scores for that bins with nbin number of nUMIs within the range (inclusive) of start to end
[Package SlideCNA version 0.1.0 Index]