readH5ADObsNames {CytoSimplex} | R Documentation |
Extract 'adata.obs_names' from an H5AD file
Description
It frequently happens that velocity analyses stored in H5AD files do not contain the full raw count data suggested for CytoSimplex visualization. Extracting the cell IDs (e.g. barcodes) helps matching the velocity data to raw count data imported from other sources.
Usage
readH5ADObsNames(filename)
Arguments
filename |
File path to the H5AD file. |
Value
A character vector of cell IDs.
See Also
Other H5AD-reader:
readH5ADObsVar()
,
readH5ADUnsSpMat()
,
readVelocytoLoom()
Examples
## Not run:
h5adFile <- "path/to/analysis.h5ad"
cellIDs <- readH5ADObsNames(h5adFile)
## End(Not run)
[Package CytoSimplex version 0.2.0 Index]