Seq1093 {localScore} | R Documentation |
Long protein sequence
Description
A long protein sequence.
Usage
data(Seq1093)
Format
A character string with 1093 characters corresponding to Q60519.fasta in UniProt Data base.
Source
Examples
data(Seq1093)
Seq1093
nchar(Seq1093)
data(HydroScore)
seqScore <- CharSequence2ScoreSequence(Seq1093,HydroScore)
seqScore[1:50]
localScoreC(seqScore)$localScore
LS <- localScoreC(seqScore)$localScore[1]
prob1 <- scoreSequences2probabilityVector(list(seqScore))
daudin(local_score = LS, sequence_length = nchar(Seq1093),
score_probabilities = prob1,
sequence_min = min(seqScore),
sequence_max = max(seqScore))
karlin(local_score = LS, sequence_length = nchar(Seq1093),
score_probabilities = prob1,
sequence_min = min(seqScore),
sequence_max = max(seqScore))
[Package localScore version 2.0.3 Index]