choose_stable_clusters {ClustAssess} | R Documentation |
Choose stable clusters based on ECC and frequency
Description
Filter the list of clusters obtained by the automatic ClustAssess pipeline using the ECC and frequency thresholds. The ECC threshold is meant to filter out the partitions that are highly sensitive to the change of the random seed, while the purpose of the frequency threshold is to assure a statistical significance of the inferred stability.
Usage
choose_stable_clusters(
clusters_list,
ecc_threshold = 0.9,
freq_threshold = 30,
summary_function = mean
)
Arguments
clusters_list |
List of clusters obtained from the
|
ecc_threshold |
Minimum ECC value to consider a cluster as stable. Default is 0.9. |
freq_threshold |
Minimum total frequency of the partitions to consider. Default is 30. |
summary_function |
Function to summarize the ECC values. Default
is |
Value
A list of stable clusters that satisfy the ECC and frequency.
[Package ClustAssess version 1.1.0 Index]