demo_multiomics_analysis {SUMO} | R Documentation |
Demonstration of SUMO Utility in Multi-Omics Analysis using MOFA2
Description
Run a complete MOFA2-based analysis pipeline using either SUMO-generated or real-world CLL multi-omics data. This function includes preprocessing, MOFA model training, variance decomposition visualization, and optional PowerPoint report generation.
Usage
demo_multiomics_analysis(
data_type = c("SUMO", "real_world"),
export_pptx = TRUE,
verbose = TRUE
)
Arguments
data_type |
Character. Options are |
export_pptx |
Logical. If |
verbose |
Logical. If |
Details
PowerPoint generation is skipped if required packages (officer
, rvg
, and systemfonts >= 1.1.0
) are not available.
Value
Invisibly returns the trained MOFA model object.
See Also
simulate_twoOmicsData()
, plot_factor()
, plot_weights()
Examples
if (
requireNamespace("MOFA2", quietly = TRUE) &&
requireNamespace("MOFAdata", quietly = TRUE) &&
requireNamespace("systemfonts", quietly = TRUE) &&
utils::packageVersion("systemfonts") >= "1.1.0" &&
identical(Sys.getenv("NOT_CRAN"), "true")
) {
demo_multiomics_analysis("SUMO", export_pptx = FALSE)
demo_multiomics_analysis("real_world", export_pptx = FALSE)
}
[Package SUMO version 1.2.0 Index]