%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  SUMO
%global packver   1.2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.0
Release:          1%{?dist}%{?buildtag}
Summary:          Generating Multi-Omics Datasets for Testing and Benchmarking

License:          CC BY 4.0
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-officer 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-rlang 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-utils 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-officer 

%description
Provides tools to simulate multi-omics datasets with predefined signal
structures. The generated data can be used for testing, validating, and
benchmarking integrative analysis methods such as factor models and
clustering approaches. This version includes enhanced signal
customization, visualization tools (scatter, histogram, 3D), MOFA-based
analysis pipelines, PowerPoint export, and statistical profiling of
datasets. Designed for both method development and teaching, SUMO supports
real and synthetic data pipelines with interpretable outputs. Tini,
Giulia, et al (2019) <doi:10.1093/bib/bbx167>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}