ObtainigValueSPBal {CoDaLoMic}R Documentation

Obtaining the selected principal balances values

Description

Calculates the value of the selected principal balances (SPBal) of the BPBM model at all time points.

Usage

ObtainigValueSPBal(Num, Dem, especie, Tt)

Arguments

Num

List. The component i of the list has the number of the row of the matrix especie where the bacteria in the numerator of the principal balance i are placed.

Dem

List. The component i of the list has the number of the row of the matrix especie where the bacteria in the denominator of the principal balance i are placed.

especie

Matrix that contains at row i the bacterial taxa of bacteria i at all time points.

Tt

Number of time points available

Value

Returns a list with:

References

Creus-Martí, I., Moya, A., Santonja, F. J. (2022). Bayesian hierarchical compositional models for analysing longitudinal abundance data from microbiome studies. Complexity, 2022.

Examples


set.seed(314)
esp2=t(gtools::rdirichlet(n=6, c(1,1,5,1,1)))

Num2<-list(3,c(3,5),1,c(3,5,4))
Dem2<-list(5,4,2,c(1,2))

ObtainigValueSPBal(Num2,Dem2,esp2,6)


[Package CoDaLoMic version 0.1.1 Index]