bioamp {dpcR} | R Documentation |
Analyze and plot a Bio-Rad droplet digital PCR experiment
Description
bioamp
is a function to plot and analyze the amplitude data of a Bio-Rad droplet digital PCR experiment.
Usage
bioamp(data = data, amp_x = 1, amp_y = 2, cluster = 3,
robust = TRUE, plot = TRUE, stat = TRUE,
xlab = "Assay 1 Amplitude", ylab = "Assay 2 Amplitude", ...)
Arguments
data |
object of class |
amp_x |
is the first amplitude channel (x-axis). |
amp_y |
is the second amplitude channel (y-axis). |
cluster |
are the clusters of the plot. The number indicates the column of a table, which contains the cluster information. |
robust |
Is the method used to calculate the location (mean or median) and dispersion (standard deviation or median absolute deviation). |
plot |
logical, if |
stat |
logical, if |
xlab |
x-label of the plot. |
ylab |
y-label of the plot. |
... |
other arguments passed to the |
Value
A matrix with the summary results together with the raw data plot.
Author(s)
Stefan Roediger, Michal Burdukiewcz
Examples
oldpar <- par(mfrow = c(1, 1))
par(mfrow = c(1,2))
bioamp(data = pds_raw[["D01"]], main = "Well D01", pch = 19)
bioamp(data = pds_raw[["D02"]], main = "Well D02", pch = 19)
par(oldpar)