rscu_data {ggmRSCU} | R Documentation |
Relative Synonymous Codon Usage (RSCU) Data
Description
A longitudinal dataset documenting codon usage bias patterns across multiple species. Contains normalized RSCU values calculated from protein- coding sequences.
Usage
data(rscu_data)
Format
A tibble with 186 rows and 5 columns:
- AA
character
Standard three-letter amino acid code with isotype variants indicating synonymous codon groups: e.g.,"Phe"
,"Leu1"
,"Leu2"
- Codon
character
RNA codon triplet in uppercase: e.g.,"UUU"
,"CUA"
- Fill
integer
Group index classifying synonymous codons for each amino acid (e.g., 1, 2, etc.)- Species
character
Organism identifier in[Accession].[Version]
format: e.g.,"MK693137.1"
- RSCU
numeric
Relative Synonymous Codon Usage value
Source
Data derived from previously published studies based on protein- coding sequences analyzed in our laboratory. Accession numbers correspond to NCBI GenBank.