%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mixedbiastest
%global packver   0.3.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.0
Release:          1%{?dist}%{?buildtag}
Summary:          Bias Diagnostic for Linear Mixed Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-rlang 

%description
Provides a function to perform bias diagnostics on linear mixed models
fitted with lmer() from the 'lme4' package. Implements permutation tests
for assessing the bias of fixed effects, as described in Karl and
Zimmerman (2021) <doi:10.1016/j.jspi.2020.06.004>. Karl and Zimmerman
(2020) <doi:10.17632/tmynggddfm.1> provide R code for implementing the
test using 'mvglmmRank' output. Development of this package was assisted
by 'GPT o1-preview' for code structure and documentation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}