%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  archeofrag
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Spatial Analysis in Archaeology from Refitting Fragments

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-graphics 
BuildRequires:    R-stats 
BuildRequires:    R-grDevices 
BuildRequires:    R-methods 
BuildRequires:    R-utils 
Requires:         R-CRAN-igraph 
Requires:         R-graphics 
Requires:         R-stats 
Requires:         R-grDevices 
Requires:         R-methods 
Requires:         R-utils 

%description
Methods to analyse spatial units in archaeology from the relationships
between refitting fragmented objects scattered in these units (e.g.
stratigraphic layers). Graphs are used to model archaeological
observations. The package is mainly based on the 'igraph' package for
graph analysis. Functions can: 1) create, manipulate, and simulate
fragmentation graphs, 2) measure the cohesion and admixture of
archaeological spatial units, and 3) characterise the topology of a
specific set of refitting relationships. Empirical datasets are provided
as examples. Documentation about 'archeofrag' is provided by the vignette
included in this package, by the accompanying scientific papers: Plutniak
(2021, Journal of Archaeological Science, <doi:10.1016/j.jas.2021.105501>)
and Plutniak (2022, Journal of Open Source Software,
<doi:10.21105/joss.04335>). This package is complemented by a companion
GUI application available at
<https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}