%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  paleobuddy
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Simulating Diversification Dynamics

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-methods 
Requires:         R-methods 

%description
Simulation of species diversification, fossil records, and phylogenies.
While the literature on species birth-death simulators is extensive,
including important software like 'paleotree' and 'APE', we concluded
there were interesting gaps to be filled regarding possible
diversification scenarios. Here we strove for flexibility over focus,
implementing a large array of regimens for users to experiment with and
combine. In this way, 'paleobuddy' can be used in complement to other
simulators as a flexible jack of all trades, or, in the case of scenarios
implemented only here, can allow for robust and easy simulations for novel
situations. Environmental data modified from that in 'RPANDA': Morlon H.
et al (2016) <doi:10.1111/2041-210X.12526>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}