%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  ribd
%global packver   1.7.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.7.1
Release:          1%{?dist}%{?buildtag}
Summary:          Pedigree-based Relatedness Coefficients

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-pedtools >= 2.6.0
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-kinship2 
BuildRequires:    R-CRAN-slam 
Requires:         R-CRAN-pedtools >= 2.6.0
Requires:         R-CRAN-glue 
Requires:         R-CRAN-kinship2 
Requires:         R-CRAN-slam 

%description
Recursive algorithms for computing various relatedness coefficients,
including pairwise kinship, kappa and identity coefficients. Both
autosomal and X-linked coefficients are computed. Founders are allowed to
be inbred, which enables construction of any given kappa coefficients, as
described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition
to the standard coefficients, 'ribd' also computes a range of lesser-known
coefficients, including generalised kinship coefficients, multi-person
coefficients and two-locus coefficients (Vigeland, 2023,
<doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available
through the online app 'QuickPed' at
<https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022)
<doi:10.1186/s12859-022-04759-y>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}