%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  oppr
%global packver   1.0.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.5
Release:          1%{?dist}%{?buildtag}
Summary:          Optimal Project Prioritization

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4.0
Requires:         R-core >= 3.4.0
BuildRequires:    R-CRAN-lpSolveAPI >= 5.5.2.0.17
BuildRequires:    R-CRAN-ape >= 5.2
BuildRequires:    R-CRAN-ggplot2 >= 3.5.0
BuildRequires:    R-CRAN-withr >= 2.4.1
BuildRequires:    R-CRAN-tibble >= 2.0.0
BuildRequires:    R-CRAN-magrittr >= 1.5
BuildRequires:    R-CRAN-rlang >= 1.1.3
BuildRequires:    R-CRAN-cli >= 1.0.1
BuildRequires:    R-CRAN-proto >= 1.0.0
BuildRequires:    R-CRAN-RcppArmadillo >= 0.9.100.5.0
BuildRequires:    R-CRAN-RcppProgress >= 0.4.1
BuildRequires:    R-CRAN-tidytree >= 0.3.3
BuildRequires:    R-CRAN-viridisLite >= 0.3.0
BuildRequires:    R-CRAN-assertthat >= 0.2.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.19
BuildRequires:    R-CRAN-uuid >= 0.1.2
BuildRequires:    R-utils 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-Matrix 
Requires:         R-CRAN-lpSolveAPI >= 5.5.2.0.17
Requires:         R-CRAN-ape >= 5.2
Requires:         R-CRAN-ggplot2 >= 3.5.0
Requires:         R-CRAN-withr >= 2.4.1
Requires:         R-CRAN-tibble >= 2.0.0
Requires:         R-CRAN-magrittr >= 1.5
Requires:         R-CRAN-rlang >= 1.1.3
Requires:         R-CRAN-cli >= 1.0.1
Requires:         R-CRAN-proto >= 1.0.0
Requires:         R-CRAN-tidytree >= 0.3.3
Requires:         R-CRAN-viridisLite >= 0.3.0
Requires:         R-CRAN-assertthat >= 0.2.0
Requires:         R-CRAN-uuid >= 0.1.2
Requires:         R-utils 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-CRAN-Matrix 

%description
A decision support tool for prioritizing conservation projects.
Prioritizations can be developed by maximizing expected feature richness,
expected phylogenetic diversity, the number of features that meet
persistence targets, or identifying a set of projects that meet
persistence targets for minimal cost. Constraints (e.g. lock in specific
actions) and feature weights can also be specified to further customize
prioritizations. After defining a project prioritization problem,
solutions can be obtained using exact algorithms, heuristic algorithms, or
random processes. In particular, it is recommended to install the 'Gurobi'
optimizer (available from <https://www.gurobi.com>) because it can
identify optimal solutions very quickly. Finally, methods are provided for
comparing different prioritizations and evaluating their benefits. For
more information, see Hanson et al. (2019) <doi:10.1111/2041-210X.13264>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}