%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  BioMonTools
%global packver   1.2.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.4
Release:          1%{?dist}%{?buildtag}
Summary:          Biomonitoring and Bioassessment Calculations

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-maps 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-maps 
Requires:         R-CRAN-rlang 
Requires:         R-stats 
Requires:         R-CRAN-tidyselect 
Requires:         R-CRAN-tidyr 

%description
An aid for manipulating data associated with biomonitoring and
bioassessment. Calculations include metric calculation, marking of
excluded taxa, subsampling, and multimetric index calculation.  Targeted
communities are benthic macroinvertebrates, fish, periphyton, and coral.
As described in the Revised Rapid Bioassessment Protocols (Barbour et al.
1999) <https://archive.epa.gov/water/archive/web/html/index-14.html>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}