%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mcglm
%global packver   0.9.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.9.0
Release:          1%{?dist}%{?buildtag}
Summary:          Multivariate Covariance Generalized Linear Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.5.0
Requires:         R-core >= 4.5.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.16
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-Rcpp >= 0.12.16
Requires:         R-stats 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-assertthat 
Requires:         R-graphics 

%description
Fitting multivariate covariance generalized linear models (McGLMs) to
data.  McGLM is a general framework for non-normal multivariate data
analysis, designed to handle multivariate response variables, along with a
wide range of temporal and spatial correlation structures defined in terms
of a covariance link function combined with a matrix linear predictor
involving known matrices. The models take non-normality into account in
the conventional way by means of a variance function, and the mean
structure is modelled by means of a link function and a linear predictor.
The models are fitted using an efficient Newton scoring algorithm based on
quasi-likelihood and Pearson estimating functions, using only
second-moment assumptions. This provides a unified approach to a wide
variety of different types of response variables and covariance
structures, including multivariate extensions of repeated measures, time
series, longitudinal, spatial and spatio-temporal structures. The package
offers a user-friendly interface for fitting McGLMs similar to the glm() R
function. See Bonat (2018) <doi:10.18637/jss.v084.i04>, for more
information and examples.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}