%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  actigraph.sleepr
%global packver   0.4.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.4.0
Release:          1%{?dist}%{?buildtag}
Summary:          Detect Periods of Sleep and Non-Wear in 'ActiGraph' Data

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.2.4
Requires:         R-core >= 3.2.4
BuildRequires:    R-CRAN-tidyr >= 1.1.1
BuildRequires:    R-CRAN-dplyr >= 1.0.1
BuildRequires:    R-CRAN-DBI 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-RcppRoll 
BuildRequires:    R-CRAN-RSQLite 
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-zoo 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyselect 
Requires:         R-CRAN-tidyr >= 1.1.1
Requires:         R-CRAN-dplyr >= 1.0.1
Requires:         R-CRAN-DBI 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-RcppRoll 
Requires:         R-CRAN-RSQLite 
Requires:         R-CRAN-assertthat 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-zoo 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyselect 

%description
Reads *.agd files exported from 'ActiGraph' devices; implements the
Troiano (2008) <doi:10.1249/mss.0b013e31815a51b3> and Choi (2011)
<doi:10.1249/MSS.0b013e3181ed61a3> algorithms for detecting periods on
non-wear; implements the Sadeh (1994) <doi:10.1093/sleep/17.3.201>,
Cole-Kripke (1992) <doi:10.1093/sleep/15.5.461>, and Oakley (1997)
algorithms for detecting asleep/awake state and the Tudor-Locke (2014)
<doi:10.1139/apnm-2013-0173> algorithm to detect sleep periods from
asleep/awake states.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}