%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  rxode2
%global packver   5.1.7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          5.1.7
Release:          1%{?dist}%{?buildtag}
Summary:          Facilities for Simulating from ODE-Based Models

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildRequires:    R-CRAN-ggplot2 >= 3.4.0
BuildRequires:    R-CRAN-StanHeaders >= 2.21.0.7
BuildRequires:    R-CRAN-cli >= 2.0.0
BuildRequires:    R-CRAN-dparser >= 1.3.1.12
BuildRequires:    R-CRAN-data.table >= 1.12.4
BuildRequires:    R-CRAN-lotri >= 1.0.4
BuildRequires:    R-CRAN-RcppArmadillo >= 0.9.300.2.0
BuildRequires:    R-CRAN-PreciseSums >= 0.7
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.9.2
BuildRequires:    R-CRAN-Rcpp >= 0.12.3
BuildRequires:    R-CRAN-RcppParallel 
BuildRequires:    R-CRAN-backports 
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-inline 
BuildRequires:    R-CRAN-memoise 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-mirai 
BuildRequires:    R-CRAN-rex 
BuildRequires:    R-CRAN-sys 
BuildRequires:    R-tools 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-qs2 
BuildRequires:    R-CRAN-rxode2ll 
BuildRequires:    R-CRAN-vctrs 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-sitmo 
BuildRequires:    R-CRAN-BH 
Requires:         R-CRAN-ggplot2 >= 3.4.0
Requires:         R-CRAN-cli >= 2.0.0
Requires:         R-CRAN-dparser >= 1.3.1.12
Requires:         R-CRAN-data.table >= 1.12.4
Requires:         R-CRAN-lotri >= 1.0.4
Requires:         R-CRAN-PreciseSums >= 0.7
Requires:         R-CRAN-Rcpp >= 0.12.3
Requires:         R-CRAN-RcppParallel 
Requires:         R-CRAN-backports 
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-inline 
Requires:         R-CRAN-memoise 
Requires:         R-methods 
Requires:         R-CRAN-mirai 
Requires:         R-CRAN-rex 
Requires:         R-CRAN-sys 
Requires:         R-tools 
Requires:         R-utils 
Requires:         R-CRAN-qs2 
Requires:         R-CRAN-rxode2ll 
Requires:         R-CRAN-vctrs 
Requires:         R-stats 

%description
Facilities for running simulations from ordinary differential equation
('ODE') models, such as pharmacometrics and other compartmental models.  A
compilation manager translates the ODE model into C, compiles it, and
dynamically loads the object code into R for improved computational
efficiency.  An event table object facilitates the specification of
complex dosing regimens (optional) and sampling schedules.  NB: The use of
this package requires both C and Fortran compilers, for details on their
use with R please see Section 6.3, Appendix A, and Appendix D in the "R
Administration and Installation" manual. Also the code is mostly released
under GPL.  The 'VODE' and 'LSODA' are in the public domain.  The vendored
'SUNDIALS' 'CVODE' sources and headers are released under the BSD-3-Clause
license. The information is available in the inst/COPYRIGHTS.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}