%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  templateICAr
%global packver   0.11.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.11.3
Release:          1%{?dist}%{?buildtag}
Summary:          Estimate Brain Networks and Connectivity with ICA and Empirical Priors

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildArch:        noarch
BuildRequires:    R-CRAN-fMRItools >= 0.5.3
BuildRequires:    R-CRAN-fMRIscrub >= 0.14.5
BuildRequires:    R-CRAN-abind 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-ica 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-pesel 
BuildRequires:    R-CRAN-SQUAREM 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-fMRItools >= 0.5.3
Requires:         R-CRAN-fMRIscrub >= 0.14.5
Requires:         R-CRAN-abind 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-ica 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-matrixStats 
Requires:         R-methods 
Requires:         R-CRAN-pesel 
Requires:         R-CRAN-SQUAREM 
Requires:         R-stats 
Requires:         R-utils 

%description
Implements the template ICA (independent components analysis) model
proposed in Mejia et al. (2020) <doi:10.1080/01621459.2019.1679638> and
the spatial template ICA model proposed in Mejia et al. (2022)
<doi:10.1080/10618600.2022.2104289>. Both models estimate subject-level
brain as deviations from known population-level networks, which are
estimated using standard ICA algorithms. Both models employ an
expectation-maximization algorithm for estimation of the latent brain
networks and unknown model parameters. Includes direct support for
'CIFTI', 'GIFTI', and 'NIFTI' neuroimaging file formats. Note, this
package has been deprecated and superseded by 'BayesBrainMap', which
includes model improvements and new names for the core functions.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}