%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  campsis
%global packver   1.9.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.9.1
Release:          1%{?dist}%{?buildtag}
Summary:          Generic PK/PD Simulation Platform Campsis

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-campsismod 
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-CRAN-digest 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-furrr 
BuildRequires:    R-CRAN-future 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-jsonvalidate 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-progressr 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-vctrs 
Requires:         R-CRAN-campsismod 
Requires:         R-CRAN-assertthat 
Requires:         R-CRAN-digest 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-furrr 
Requires:         R-CRAN-future 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-jsonvalidate 
Requires:         R-CRAN-lifecycle 
Requires:         R-CRAN-MASS 
Requires:         R-methods 
Requires:         R-CRAN-progressr 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rlang 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-vctrs 

%description
A generic, easy-to-use and intuitive pharmacokinetic/pharmacodynamic
(PK/PD) simulation platform based on the R packages 'rxode2' and
'mrgsolve'. Campsis provides an abstraction layer over the underlying
processes of defining a PK/PD model, assembling a custom dataset and
running a simulation. The package has a strong dependency on the R package
'campsismod', which allows models to be read from and written to files,
including through a JSON-based interface, and to be adapted further on the
fly in the R environment. In addition, 'campsis' allows users to assemble
datasets in an intuitive manner, including via a JSON-based interface to
import Campsis datasets defined using formal JSON schemas distributed with
the package. Once the dataset is ready, the package prepares the
simulation, calls 'rxode2' or 'mrgsolve' (at the user's choice), and
returns the results for the given model, dataset and desired simulation
settings. The package itself is licensed under the GPL (>= 3); the JSON
schema files shipped in inst/extdata are licensed separately under the
Creative Commons Attribution 4.0 International (CC BY 4.0).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}