Warning: Permanently added '100.24.13.250' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5185607 --chroot fedora-rawhide-i386 --detached
Version: 0.62
PID: 14894
Logging PID: 14895
Task:
{'appstream': False,
 'background': True,
 'build_id': 5185607,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ef326915a04dc7acc1430b92053244d5aaf7ae9c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test.checker/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-13',
 'project_dirname': 'gcc-13-test.checker',
 'project_name': 'gcc-13-test.checker',
 'project_owner': 'jakub',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test.checker/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository'},
           {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
            'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
            'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
 'sandbox': 'jakub/gcc-13-test.checker--jakub',
 'source_json': {},
 'source_type': None,
 'submitter': 'jakub',
 'tags': [],
 'task_id': '5185607-fedora-rawhide-i386',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test.checker/mmseq /var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test.checker/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq'...

Running: git checkout ef326915a04dc7acc1430b92053244d5aaf7ae9c

cmd: ['git', 'checkout', 'ef326915a04dc7acc1430b92053244d5aaf7ae9c']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq
rc: 0
stdout: 
stderr: Note: switching to 'ef326915a04dc7acc1430b92053244d5aaf7ae9c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ef32691 automatic import of mmseq

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test.checker/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  35.6M      0 --:--:-- --:--:-- --:--:-- 35.2M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672321733.292103 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq/mmseq.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672321733.292103/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  23 MB/s | 2.7 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe  29 kB/s |  86 kB     00:02    
local                                            71 MB/s |  60 MB     00:00    
Dependencies resolved.
=========================================================================================================================
 Package                         Arch    Version                    Repository                                       Size
=========================================================================================================================
Installing:
 dnf                             noarch  4.14.0-1.fc38              local                                           469 k
 dnf-plugins-core                noarch  4.3.1-1.fc38               local                                            34 k
Installing dependencies:
 alternatives                    i686    1.21-1.fc38                local                                            38 k
 audit-libs                      i686    3.0.9-2.fc38               local                                           122 k
 basesystem                      noarch  11-14.fc37                 local                                           7.0 k
 bash                            i686    5.2.9-3.fc38               local                                           1.8 M
 bzip2-libs                      i686    1.0.8-12.fc37              local                                            41 k
 ca-certificates                 noarch  2022.2.54-5.fc37           local                                           829 k
 coreutils                       i686    9.1-8.fc38                 local                                           1.1 M
 coreutils-common                i686    9.1-8.fc38                 local                                           2.0 M
 crypto-policies                 noarch  20221215-1.gita4c31a3.fc38 local                                            63 k
 curl                            i686    7.87.0-1.fc38              local                                           347 k
 cyrus-sasl-lib                  i686    2.1.28-8.fc38              local                                           857 k
 dbus-libs                       i686    1:1.14.4-1.fc38            local                                           167 k
 dnf-data                        noarch  4.14.0-1.fc38              local                                            43 k
 elfutils-default-yama-scope     noarch  0.188-3.fc38               local                                            15 k
 elfutils-libelf                 i686    0.188-3.fc38               local                                           203 k
 elfutils-libs                   i686    0.188-3.fc38               local                                           286 k
 expat                           i686    2.5.0-1.fc38               local                                           115 k
 fedora-gpg-keys                 noarch  38-0.3                     local                                           115 k
 fedora-release                  noarch  38-0.6                     local                                            11 k
 fedora-release-common           noarch  38-0.6                     local                                            21 k
 fedora-release-identity-basic   noarch  38-0.6                     local                                            11 k
 fedora-repos                    noarch  38-0.3                     local                                            10 k
 fedora-repos-rawhide            noarch  38-0.3                     local                                           9.7 k
 file-libs                       i686    5.42-4.fc37                local                                           684 k
 filesystem                      i686    3.18-2.fc37                local                                           1.1 M
 findutils                       i686    1:4.9.0-2.fc37             local                                           492 k
 gawk                            i686    5.1.1-4.fc37               local                                           1.0 M
 gdbm-libs                       i686    1:1.23-2.fc37              local                                            60 k
 glib2                           i686    2.74.1-2.fc38              local                                           2.8 M
 glibc                           i686    2.36.9000-19.fc38          local                                           1.9 M
 glibc-common                    i686    2.36.9000-19.fc38          local                                           315 k
 glibc-minimal-langpack          i686    2.36.9000-19.fc38          local                                            30 k
 gmp                             i686    1:6.2.1-3.fc37             local                                           305 k
 gnupg2                          i686    2.3.8-1.fc38               local                                           2.6 M
 gnutls                          i686    3.7.8-9.fc38               local                                           1.1 M
 gpgme                           i686    1.17.1-3.fc38              local                                           218 k
 grep                            i686    3.8-1.fc38                 local                                           289 k
 ima-evm-utils                   i686    1.4-6.fc37                 local                                            63 k
 json-c                          i686    0.16-3.fc38                local                                            44 k
 keyutils-libs                   i686    1.6.1-5.fc37               local                                            32 k
 krb5-libs                       i686    1.20.1-3.fc38              local                                           763 k
 libacl                          i686    2.3.1-4.fc37               local                                            25 k
 libarchive                      i686    3.6.1-3.fc38               local                                           443 k
 libassuan                       i686    2.5.5-5.fc37               local                                            69 k
 libattr                         i686    2.5.1-5.fc37               local                                            18 k
 libb2                           i686    0.98.1-7.fc37              local                                            35 k
 libblkid                        i686    2.38.1-3.fc38              local                                           116 k
 libbrotli                       i686    1.0.9-9.fc37               local                                           317 k
 libcap                          i686    2.48-5.fc37                local                                            68 k
 libcap-ng                       i686    0.8.3-4.fc38               local                                            33 k
 libcom_err                      i686    1.46.5-3.fc37              local                                            26 k
 libcomps                        i686    0.1.18-4.fc37              local                                            84 k
 libcurl                         i686    7.87.0-1.fc38              local                                           327 k
 libdnf                          i686    0.68.0-1.fc38              local                                           722 k
 libevent                        i686    2.1.12-7.fc37              local                                           279 k
 libffi                          i686    3.4.4-1.fc38               local                                            36 k
 libfsverity                     i686    1.4-8.fc37                 local                                            20 k
 libgcc                          i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  101 k
 libgcrypt                       i686    1.10.1-6.fc38              local                                           484 k
 libgomp                         i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  304 k
 libgpg-error                    i686    1.46-1.fc38                local                                           225 k
 libidn2                         i686    2.3.4-1.fc38               local                                           154 k
 libksba                         i686    1.6.3-1.fc38               local                                           161 k
 libmodulemd                     i686    2.14.0-4.fc37              local                                           241 k
 libmount                        i686    2.38.1-3.fc38              local                                           141 k
 libnghttp2                      i686    1.51.0-1.fc38              local                                            80 k
 libnsl2                         i686    2.0.0-4.fc37               local                                            31 k
 libpsl                          i686    0.21.2-1.fc38              local                                            66 k
 librepo                         i686    1.15.1-1.fc38              local                                           102 k
 libreport-filesystem            noarch  2.17.6-1.fc38              local                                            14 k
 libselinux                      i686    3.5-0.rc1.1.fc38           local                                            91 k
 libsemanage                     i686    3.5-0.rc1.1.fc38           local                                           128 k
 libsepol                        i686    3.5-0.rc1.1.fc38           local                                           336 k
 libsigsegv                      i686    2.14-3.fc37                local                                            27 k
 libsmartcols                    i686    2.38.1-3.fc38              local                                            65 k
 libsolv                         i686    0.7.22-3.fc37              local                                           428 k
 libssh                          i686    0.10.4-2.fc38              local                                           222 k
 libssh-config                   noarch  0.10.4-2.fc38              local                                           8.8 k
 libstdc++                       i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  857 k
 libtasn1                        i686    4.19.0-1.fc38              local                                            76 k
 libtirpc                        i686    1.3.3-0.fc37               local                                           101 k
 libunistring                    i686    1.0-2.fc37                 local                                           551 k
 libuuid                         i686    2.38.1-3.fc38              local                                            28 k
 libverto                        i686    0.3.2-4.fc37               local                                            21 k
 libxcrypt                       i686    4.4.33-5.fc38              local                                           123 k
 libxml2                         i686    2.10.3-2.fc38              local                                           745 k
 libyaml                         i686    0.2.5-8.fc37               local                                            62 k
 libzstd                         i686    1.5.2-3.fc37               local                                           274 k
 lua-libs                        i686    5.4.4-6.fc38               local                                           148 k
 lz4-libs                        i686    1.9.3-5.fc37               local                                            72 k
 mpdecimal                       i686    2.5.1-4.fc37               local                                           106 k
 mpfr                            i686    4.1.1-2.fc38               local                                           637 k
 ncurses-base                    noarch  6.3-5.20221126.fc38        local                                            61 k
 ncurses-libs                    i686    6.3-5.20221126.fc38        local                                           348 k
 nettle                          i686    3.8-2.fc37                 local                                           430 k
 npth                            i686    1.6-10.fc38                local                                            24 k
 openldap                        i686    2.6.3-1.fc38               local                                           273 k
 openssl-libs                    i686    1:3.0.5-6.fc38             local                                           2.1 M
 p11-kit                         i686    0.24.1-5.fc38              local                                           335 k
 p11-kit-trust                   i686    0.24.1-5.fc38              local                                           135 k
 pcre2                           i686    10.40-1.fc37.1             local                                           234 k
 pcre2-syntax                    noarch  10.40-1.fc37.1             local                                           142 k
 popt                            i686    1.19-1.fc38                local                                            61 k
 publicsuffix-list-dafsa         noarch  20221208-1.fc38            local                                            59 k
 python-pip-wheel                noarch  22.3.1-1.fc38              local                                           1.4 M
 python-setuptools-wheel         noarch  65.5.1-1.fc38              local                                           715 k
 python3                         i686    3.11.1-1.fc38              local                                            27 k
 python3-dateutil                noarch  1:2.8.2-4.fc37             local                                           350 k
 python3-dbus                    i686    1.3.2-1.fc38               local                                           150 k
 python3-distro                  noarch  1.8.0-1.fc38               local                                            45 k
 python3-dnf                     noarch  4.14.0-1.fc38              local                                           567 k
 python3-dnf-plugins-core        noarch  4.3.1-1.fc38               local                                           263 k
 python3-gpg                     i686    1.17.1-3.fc38              local                                           277 k
 python3-hawkey                  i686    0.68.0-1.fc38              local                                           111 k
 python3-libcomps                i686    0.1.18-4.fc37              local                                            51 k
 python3-libdnf                  i686    0.68.0-1.fc38              local                                           828 k
 python3-libs                    i686    3.11.1-1.fc38              local                                           9.3 M
 python3-rpm                     i686    4.18.0-8.fc38              local                                            95 k
 python3-six                     noarch  1.16.0-8.fc37              local                                            42 k
 readline                        i686    8.2-2.fc38                 local                                           218 k
 rpm                             i686    4.18.0-8.fc38              local                                           543 k
 rpm-build-libs                  i686    4.18.0-8.fc38              local                                           102 k
 rpm-libs                        i686    4.18.0-8.fc38              local                                           341 k
 rpm-sequoia                     i686    1.2.0-1.fc38               local                                           924 k
 rpm-sign-libs                   i686    4.18.0-8.fc38              local                                            27 k
 sed                             i686    4.8-11.fc37                local                                           300 k
 setup                           noarch  2.14.3-1.fc38              local                                           146 k
 shadow-utils                    i686    2:4.13-3.fc38              local                                           1.2 M
 sqlite-libs                     i686    3.40.0-1.fc38              local                                           705 k
 systemd-libs                    i686    252.4-598.fc38             local                                           662 k
 tpm2-tss                        i686    4.0.0-0.1.rc2.fc38         local                                           603 k
 tzdata                          noarch  2022g-1.fc38               local                                           432 k
 xz-libs                         i686    5.2.9-1.fc38               local                                           101 k
 zchunk-libs                     i686    1.2.3-1.fc38               local                                            54 k
 zlib                            i686    1.2.13-1.fc38              local                                            92 k

Transaction Summary
=========================================================================================================================
Install  137 Packages

Total download size: 57 M
Installed size: 199 M
Downloading Packages:
(1/137): libgcc-13.0.0-0.4.fc38.i686.rpm        727 kB/s | 101 kB     00:00    
(2/137): libgomp-13.0.0-0.4.fc38.i686.rpm       2.1 MB/s | 304 kB     00:00    
(3/137): alternatives-1.21-1.fc38.i686.rpm      648 kB/s |  38 kB     00:00    
(4/137): audit-libs-3.0.9-2.fc38.i686.rpm       2.1 MB/s | 122 kB     00:00    
(5/137): basesystem-11-14.fc37.noarch.rpm       2.1 MB/s | 7.0 kB     00:00    
(6/137): bzip2-libs-1.0.8-12.fc37.i686.rpm      5.4 MB/s |  41 kB     00:00    
(7/137): libstdc++-13.0.0-0.4.fc38.i686.rpm     3.9 MB/s | 857 kB     00:00    
(8/137): ca-certificates-2022.2.54-5.fc37.noarc  16 MB/s | 829 kB     00:00    
(9/137): bash-5.2.9-3.fc38.i686.rpm              20 MB/s | 1.8 MB     00:00    
(10/137): crypto-policies-20221215-1.gita4c31a3  13 MB/s |  63 kB     00:00    
(11/137): curl-7.87.0-1.fc38.i686.rpm            25 MB/s | 347 kB     00:00    
(12/137): coreutils-9.1-8.fc38.i686.rpm          12 MB/s | 1.1 MB     00:00    
(13/137): coreutils-common-9.1-8.fc38.i686.rpm   37 MB/s | 2.0 MB     00:00    
(14/137): dbus-libs-1.14.4-1.fc38.i686.rpm       12 MB/s | 167 kB     00:00    
(15/137): dnf-4.14.0-1.fc38.noarch.rpm           37 MB/s | 469 kB     00:00    
(16/137): dnf-data-4.14.0-1.fc38.noarch.rpm     9.8 MB/s |  43 kB     00:00    
(17/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm  37 MB/s | 857 kB     00:00    
(18/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 8.4 MB/s |  34 kB     00:00    
(19/137): elfutils-default-yama-scope-0.188-3.f 2.6 MB/s |  15 kB     00:00    
(20/137): elfutils-libelf-0.188-3.fc38.i686.rpm  22 MB/s | 203 kB     00:00    
(21/137): elfutils-libs-0.188-3.fc38.i686.rpm    34 MB/s | 286 kB     00:00    
(22/137): expat-2.5.0-1.fc38.i686.rpm            13 MB/s | 115 kB     00:00    
(23/137): fedora-release-38-0.6.noarch.rpm      3.0 MB/s |  11 kB     00:00    
(24/137): fedora-gpg-keys-38-0.3.noarch.rpm      20 MB/s | 115 kB     00:00    
(25/137): fedora-release-identity-basic-38-0.6. 3.7 MB/s |  11 kB     00:00    
(26/137): fedora-repos-38-0.3.noarch.rpm        3.1 MB/s |  10 kB     00:00    
(27/137): fedora-repos-rawhide-38-0.3.noarch.rp 3.1 MB/s | 9.7 kB     00:00    
(28/137): fedora-release-common-38-0.6.noarch.r 2.0 MB/s |  21 kB     00:00    
(29/137): file-libs-5.42-4.fc37.i686.rpm         32 MB/s | 684 kB     00:00    
(30/137): filesystem-3.18-2.fc37.i686.rpm        50 MB/s | 1.1 MB     00:00    
(31/137): findutils-4.9.0-2.fc37.i686.rpm        26 MB/s | 492 kB     00:00    
(32/137): gdbm-libs-1.23-2.fc37.i686.rpm        9.3 MB/s |  60 kB     00:00    
(33/137): gawk-5.1.1-4.fc37.i686.rpm             27 MB/s | 1.0 MB     00:00    
(34/137): glibc-common-2.36.9000-19.fc38.i686.r  34 MB/s | 315 kB     00:00    
(35/137): glibc-2.36.9000-19.fc38.i686.rpm       45 MB/s | 1.9 MB     00:00    
(36/137): glibc-minimal-langpack-2.36.9000-19.f 6.5 MB/s |  30 kB     00:00    
(37/137): gmp-6.2.1-3.fc37.i686.rpm              26 MB/s | 305 kB     00:00    
(38/137): glib2-2.74.1-2.fc38.i686.rpm           44 MB/s | 2.8 MB     00:00    
(39/137): gpgme-1.17.1-3.fc38.i686.rpm           19 MB/s | 218 kB     00:00    
(40/137): gnutls-3.7.8-9.fc38.i686.rpm           40 MB/s | 1.1 MB     00:00    
(41/137): grep-3.8-1.fc38.i686.rpm               24 MB/s | 289 kB     00:00    
(42/137): gnupg2-2.3.8-1.fc38.i686.rpm           56 MB/s | 2.6 MB     00:00    
(43/137): ima-evm-utils-1.4-6.fc37.i686.rpm     6.7 MB/s |  63 kB     00:00    
(44/137): json-c-0.16-3.fc38.i686.rpm           4.2 MB/s |  44 kB     00:00    
(45/137): keyutils-libs-1.6.1-5.fc37.i686.rpm   5.1 MB/s |  32 kB     00:00    
(46/137): libacl-2.3.1-4.fc37.i686.rpm          3.9 MB/s |  25 kB     00:00    
(47/137): libassuan-2.5.5-5.fc37.i686.rpm       9.8 MB/s |  69 kB     00:00    
(48/137): libarchive-3.6.1-3.fc38.i686.rpm       35 MB/s | 443 kB     00:00    
(49/137): krb5-libs-1.20.1-3.fc38.i686.rpm       36 MB/s | 763 kB     00:00    
(50/137): libattr-2.5.1-5.fc37.i686.rpm         2.9 MB/s |  18 kB     00:00    
(51/137): libb2-0.98.1-7.fc37.i686.rpm          5.3 MB/s |  35 kB     00:00    
(52/137): libblkid-2.38.1-3.fc38.i686.rpm        24 MB/s | 116 kB     00:00    
(53/137): libcap-ng-0.8.3-4.fc38.i686.rpm       5.7 MB/s |  33 kB     00:00    
(54/137): libcap-2.48-5.fc37.i686.rpm           8.5 MB/s |  68 kB     00:00    
(55/137): libbrotli-1.0.9-9.fc37.i686.rpm        30 MB/s | 317 kB     00:00    
(56/137): libcom_err-1.46.5-3.fc37.i686.rpm     7.0 MB/s |  26 kB     00:00    
(57/137): libcomps-0.1.18-4.fc37.i686.rpm       5.7 MB/s |  84 kB     00:00    
(58/137): libdnf-0.68.0-1.fc38.i686.rpm          47 MB/s | 722 kB     00:00    
(59/137): libcurl-7.87.0-1.fc38.i686.rpm         18 MB/s | 327 kB     00:00    
(60/137): libffi-3.4.4-1.fc38.i686.rpm          6.0 MB/s |  36 kB     00:00    
(61/137): libevent-2.1.12-7.fc37.i686.rpm        27 MB/s | 279 kB     00:00    
(62/137): libfsverity-1.4-8.fc37.i686.rpm       3.1 MB/s |  20 kB     00:00    
(63/137): libidn2-2.3.4-1.fc38.i686.rpm          15 MB/s | 154 kB     00:00    
(64/137): libgpg-error-1.46-1.fc38.i686.rpm      19 MB/s | 225 kB     00:00    
(65/137): libgcrypt-1.10.1-6.fc38.i686.rpm       29 MB/s | 484 kB     00:00    
(66/137): libksba-1.6.3-1.fc38.i686.rpm          21 MB/s | 161 kB     00:00    
(67/137): libmount-2.38.1-3.fc38.i686.rpm        24 MB/s | 141 kB     00:00    
(68/137): libmodulemd-2.14.0-4.fc37.i686.rpm     19 MB/s | 241 kB     00:00    
(69/137): libnsl2-2.0.0-4.fc37.i686.rpm         5.5 MB/s |  31 kB     00:00    
(70/137): libpsl-0.21.2-1.fc38.i686.rpm          13 MB/s |  66 kB     00:00    
(71/137): libnghttp2-1.51.0-1.fc38.i686.rpm     6.1 MB/s |  80 kB     00:00    
(72/137): librepo-1.15.1-1.fc38.i686.rpm         14 MB/s | 102 kB     00:00    
(73/137): libreport-filesystem-2.17.6-1.fc38.no 1.9 MB/s |  14 kB     00:00    
(74/137): libselinux-3.5-0.rc1.1.fc38.i686.rpm   14 MB/s |  91 kB     00:00    
(75/137): libsepol-3.5-0.rc1.1.fc38.i686.rpm     46 MB/s | 336 kB     00:00    
(76/137): libsigsegv-2.14-3.fc37.i686.rpm       4.4 MB/s |  27 kB     00:00    
(77/137): libsemanage-3.5-0.rc1.1.fc38.i686.rpm  11 MB/s | 128 kB     00:00    
(78/137): libsmartcols-2.38.1-3.fc38.i686.rpm    10 MB/s |  65 kB     00:00    
(79/137): libsolv-0.7.22-3.fc37.i686.rpm         33 MB/s | 428 kB     00:00    
(80/137): libssh-config-0.10.4-2.fc38.noarch.rp 1.3 MB/s | 8.8 kB     00:00    
(81/137): libtasn1-4.19.0-1.fc38.i686.rpm       8.6 MB/s |  76 kB     00:00    
(82/137): libtirpc-1.3.3-0.fc37.i686.rpm        9.8 MB/s | 101 kB     00:00    
(83/137): libssh-0.10.4-2.fc38.i686.rpm         9.2 MB/s | 222 kB     00:00    
(84/137): libuuid-2.38.1-3.fc38.i686.rpm        7.6 MB/s |  28 kB     00:00    
(85/137): libverto-0.3.2-4.fc37.i686.rpm        3.2 MB/s |  21 kB     00:00    
(86/137): libunistring-1.0-2.fc37.i686.rpm       40 MB/s | 551 kB     00:00    
(87/137): libxcrypt-4.4.33-5.fc38.i686.rpm       15 MB/s | 123 kB     00:00    
(88/137): libyaml-0.2.5-8.fc37.i686.rpm         8.5 MB/s |  62 kB     00:00    
(89/137): libzstd-1.5.2-3.fc37.i686.rpm          34 MB/s | 274 kB     00:00    
(90/137): libxml2-2.10.3-2.fc38.i686.rpm         42 MB/s | 745 kB     00:00    
(91/137): lz4-libs-1.9.3-5.fc37.i686.rpm         11 MB/s |  72 kB     00:00    
(92/137): lua-libs-5.4.4-6.fc38.i686.rpm         16 MB/s | 148 kB     00:00    
(93/137): mpdecimal-2.5.1-4.fc37.i686.rpm        13 MB/s | 106 kB     00:00    
(94/137): ncurses-libs-6.3-5.20221126.fc38.i686  29 MB/s | 348 kB     00:00    
(95/137): ncurses-base-6.3-5.20221126.fc38.noar 3.3 MB/s |  61 kB     00:00    
(96/137): mpfr-4.1.1-2.fc38.i686.rpm             29 MB/s | 637 kB     00:00    
(97/137): npth-1.6-10.fc38.i686.rpm             4.1 MB/s |  24 kB     00:00    
(98/137): nettle-3.8-2.fc37.i686.rpm             34 MB/s | 430 kB     00:00    
(99/137): openldap-2.6.3-1.fc38.i686.rpm         26 MB/s | 273 kB     00:00    
(100/137): p11-kit-trust-0.24.1-5.fc38.i686.rpm  17 MB/s | 135 kB     00:00    
(101/137): p11-kit-0.24.1-5.fc38.i686.rpm        30 MB/s | 335 kB     00:00    
(102/137): pcre2-syntax-10.40-1.fc37.1.noarch.r  19 MB/s | 142 kB     00:00    
(103/137): pcre2-10.40-1.fc37.1.i686.rpm         23 MB/s | 234 kB     00:00    
(104/137): popt-1.19-1.fc38.i686.rpm            8.9 MB/s |  61 kB     00:00    
(105/137): publicsuffix-list-dafsa-20221208-1.f 8.2 MB/s |  59 kB     00:00    
(106/137): openssl-libs-3.0.5-6.fc38.i686.rpm    48 MB/s | 2.1 MB     00:00    
(107/137): python-setuptools-wheel-65.5.1-1.fc3  46 MB/s | 715 kB     00:00    
(108/137): python3-3.11.1-1.fc38.i686.rpm       3.8 MB/s |  27 kB     00:00    
(109/137): python-pip-wheel-22.3.1-1.fc38.noarc  55 MB/s | 1.4 MB     00:00    
(110/137): python3-dateutil-2.8.2-4.fc37.noarch  31 MB/s | 350 kB     00:00    
(111/137): python3-dbus-1.3.2-1.fc38.i686.rpm    17 MB/s | 150 kB     00:00    
(112/137): python3-distro-1.8.0-1.fc38.noarch.r  10 MB/s |  45 kB     00:00    
(113/137): python3-dnf-plugins-core-4.3.1-1.fc3  28 MB/s | 263 kB     00:00    
(114/137): python3-dnf-4.14.0-1.fc38.noarch.rpm  46 MB/s | 567 kB     00:00    
(115/137): python3-gpg-1.17.1-3.fc38.i686.rpm    25 MB/s | 277 kB     00:00    
(116/137): python3-hawkey-0.68.0-1.fc38.i686.rp  18 MB/s | 111 kB     00:00    
(117/137): python3-libcomps-0.1.18-4.fc37.i686. 9.9 MB/s |  51 kB     00:00    
(118/137): python3-rpm-4.18.0-8.fc38.i686.rpm    13 MB/s |  95 kB     00:00    
(119/137): python3-libdnf-0.68.0-1.fc38.i686.rp  50 MB/s | 828 kB     00:00    
(120/137): python3-six-1.16.0-8.fc37.noarch.rpm 8.4 MB/s |  42 kB     00:00    
(121/137): readline-8.2-2.fc38.i686.rpm          21 MB/s | 218 kB     00:00    
(122/137): rpm-build-libs-4.18.0-8.fc38.i686.rp  16 MB/s | 102 kB     00:00    
(123/137): rpm-4.18.0-8.fc38.i686.rpm            22 MB/s | 543 kB     00:00    
(124/137): rpm-libs-4.18.0-8.fc38.i686.rpm       29 MB/s | 341 kB     00:00    
(125/137): rpm-sign-libs-4.18.0-8.fc38.i686.rpm 5.3 MB/s |  27 kB     00:00    
(126/137): rpm-sequoia-1.2.0-1.fc38.i686.rpm     47 MB/s | 924 kB     00:00    
(127/137): sed-4.8-11.fc37.i686.rpm              21 MB/s | 300 kB     00:00    
(128/137): setup-2.14.3-1.fc38.noarch.rpm        27 MB/s | 146 kB     00:00    
(129/137): sqlite-libs-3.40.0-1.fc38.i686.rpm    43 MB/s | 705 kB     00:00    
(130/137): shadow-utils-4.13-3.fc38.i686.rpm     51 MB/s | 1.2 MB     00:00    
(131/137): systemd-libs-252.4-598.fc38.i686.rpm  38 MB/s | 662 kB     00:00    
(132/137): tpm2-tss-4.0.0-0.1.rc2.fc38.i686.rpm  37 MB/s | 603 kB     00:00    
(133/137): xz-libs-5.2.9-1.fc38.i686.rpm         16 MB/s | 101 kB     00:00    
(134/137): tzdata-2022g-1.fc38.noarch.rpm        35 MB/s | 432 kB     00:00    
(135/137): zchunk-libs-1.2.3-1.fc38.i686.rpm     12 MB/s |  54 kB     00:00    
(136/137): zlib-1.2.13-1.fc38.i686.rpm           14 MB/s |  92 kB     00:00    
(137/137): python3-libs-3.11.1-1.fc38.i686.rpm   71 MB/s | 9.3 MB     00:00    
--------------------------------------------------------------------------------
Total                                            65 MB/s |  57 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.i686                            1/1 
  Preparing        :                                                        1/1 
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  Installing       : crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/137 
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  Installing       : tzdata-2022g-1.fc38.noarch                           3/137 
  Installing       : fedora-release-identity-basic-38-0.6.noarch          4/137 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch         5/137 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       6/137 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                   7/137 
  Installing       : ncurses-base-6.3-5.20221126.fc38.noarch              8/137 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                   9/137 
  Installing       : libreport-filesystem-2.17.6-1.fc38.noarch           10/137 
  Installing       : dnf-data-4.14.0-1.fc38.noarch                       11/137 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : fedora-gpg-keys-38-0.3.noarch                       12/137 
  Installing       : fedora-release-38-0.6.noarch                        13/137 
  Installing       : fedora-release-common-38-0.6.noarch                 14/137 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  15/137 
  Installing       : fedora-repos-38-0.3.noarch                          16/137 
  Installing       : setup-2.14.3-1.fc38.noarch                          17/137 
  Running scriptlet: setup-2.14.3-1.fc38.noarch                          17/137 
  Installing       : filesystem-3.18-2.fc37.i686                         18/137 
  Installing       : basesystem-11-14.fc37.noarch                        19/137 
  Installing       : coreutils-common-9.1-8.fc38.i686                    20/137 
  Installing       : glibc-minimal-langpack-2.36.9000-19.fc38.i686       21/137 
  Installing       : glibc-common-2.36.9000-19.fc38.i686                 22/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.i686                        23/137 
  Installing       : glibc-2.36.9000-19.fc38.i686                        23/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.i686                        23/137 
  Installing       : ncurses-libs-6.3-5.20221126.fc38.i686               24/137 
  Installing       : bash-5.2.9-3.fc38.i686                              25/137 
  Running scriptlet: bash-5.2.9-3.fc38.i686                              25/137 
  Installing       : zlib-1.2.13-1.fc38.i686                             26/137 
  Installing       : bzip2-libs-1.0.8-12.fc37.i686                       27/137 
  Installing       : xz-libs-5.2.9-1.fc38.i686                           28/137 
  Installing       : libzstd-1.5.2-3.fc37.i686                           29/137 
  Installing       : sqlite-libs-3.40.0-1.fc38.i686                      30/137 
  Installing       : gmp-1:6.2.1-3.fc37.i686                             31/137 
  Installing       : libcap-2.48-5.fc37.i686                             32/137 
  Installing       : libgpg-error-1.46-1.fc38.i686                       33/137 
  Installing       : popt-1.19-1.fc38.i686                               34/137 
  Installing       : libxml2-2.10.3-2.fc38.i686                          35/137 
  Installing       : libstdc++-13.0.0-0.4.fc38.i686                      36/137 
  Installing       : libuuid-2.38.1-3.fc38.i686                          37/137 
  Installing       : lua-libs-5.4.4-6.fc38.i686                          38/137 
  Installing       : elfutils-libelf-0.188-3.fc38.i686                   39/137 
  Installing       : file-libs-5.42-4.fc37.i686                          40/137 
  Installing       : readline-8.2-2.fc38.i686                            41/137 
  Installing       : libattr-2.5.1-5.fc37.i686                           42/137 
  Installing       : libacl-2.3.1-4.fc37.i686                            43/137 
  Installing       : libffi-3.4.4-1.fc38.i686                            44/137 
  Installing       : p11-kit-0.24.1-5.fc38.i686                          45/137 
  Installing       : libunistring-1.0-2.fc37.i686                        46/137 
  Installing       : libidn2-2.3.4-1.fc38.i686                           47/137 
  Installing       : libxcrypt-4.4.33-5.fc38.i686                        48/137 
  Installing       : pcre2-10.40-1.fc37.1.i686                           49/137 
  Installing       : libassuan-2.5.5-5.fc37.i686                         50/137 
  Installing       : nettle-3.8-2.fc37.i686                              51/137 
  Installing       : rpm-sequoia-1.2.0-1.fc38.i686                       52/137 
  Installing       : libgomp-13.0.0-0.4.fc38.i686                        53/137 
  Installing       : expat-2.5.0-1.fc38.i686                             54/137 
  Installing       : gdbm-libs-1:1.23-2.fc37.i686                        55/137 
  Installing       : json-c-0.16-3.fc38.i686                             56/137 
  Installing       : keyutils-libs-1.6.1-5.fc37.i686                     57/137 
  Installing       : libcom_err-1.46.5-3.fc37.i686                       58/137 
  Installing       : libsepol-3.5-0.rc1.1.fc38.i686                      59/137 
  Installing       : libselinux-3.5-0.rc1.1.fc38.i686                    60/137 
  Installing       : sed-4.8-11.fc37.i686                                61/137 
  Installing       : libsmartcols-2.38.1-3.fc38.i686                     62/137 
  Installing       : libtasn1-4.19.0-1.fc38.i686                         63/137 
  Installing       : lz4-libs-1.9.3-5.fc37.i686                          64/137 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     65/137 
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  Installing       : elfutils-libs-0.188-3.fc38.i686                     66/137 
  Installing       : systemd-libs-252.4-598.fc38.i686                    67/137 
  Installing       : dbus-libs-1:1.14.4-1.fc38.i686                      68/137 
  Installing       : findutils-1:4.9.0-2.fc37.i686                       69/137 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.i686                   70/137 
  Installing       : libcomps-0.1.18-4.fc37.i686                         71/137 
  Installing       : libb2-0.98.1-7.fc37.i686                            72/137 
  Installing       : grep-3.8-1.fc38.i686                                73/137 
  Installing       : libpsl-0.21.2-1.fc38.i686                           74/137 
  Installing       : libblkid-2.38.1-3.fc38.i686                         75/137 
  Installing       : libmount-2.38.1-3.fc38.i686                         76/137 
  Installing       : mpdecimal-2.5.1-4.fc37.i686                         77/137 
  Installing       : libgcrypt-1.10.1-6.fc38.i686                        78/137 
  Installing       : libksba-1.6.3-1.fc38.i686                           79/137 
  Installing       : mpfr-4.1.1-2.fc38.i686                              80/137 
  Installing       : alternatives-1.21-1.fc38.i686                       81/137 
  Installing       : p11-kit-trust-0.24.1-5.fc38.i686                    82/137 
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  Installing       : openssl-libs-1:3.0.5-6.fc38.i686                    83/137 
  Installing       : coreutils-9.1-8.fc38.i686                           84/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             85/137 
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  Installing       : libfsverity-1.4-8.fc37.i686                         86/137 
  Installing       : zchunk-libs-1.2.3-1.fc38.i686                       87/137 
  Installing       : gnutls-3.7.8-9.fc38.i686                            88/137 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch               89/137 
  Installing       : glib2-2.74.1-2.fc38.i686                            90/137 
  Installing       : libarchive-3.6.1-3.fc38.i686                        91/137 
  Installing       : libevent-2.1.12-7.fc37.i686                         92/137 
  Installing       : openldap-2.6.3-1.fc38.i686                          93/137 
  Installing       : libbrotli-1.0.9-9.fc37.i686                         94/137 
  Installing       : libcap-ng-0.8.3-4.fc38.i686                         95/137 
  Installing       : audit-libs-3.0.9-2.fc38.i686                        96/137 
  Installing       : rpm-libs-4.18.0-8.fc38.i686                         97/137 
  Installing       : libsolv-0.7.22-3.fc37.i686                          98/137 
  Installing       : rpm-build-libs-4.18.0-8.fc38.i686                   99/137 
  Installing       : libsemanage-3.5-0.rc1.1.fc38.i686                  100/137 
  Installing       : shadow-utils-2:4.13-3.fc38.i686                    101/137 
  Installing       : libnghttp2-1.51.0-1.fc38.i686                      102/137 
  Installing       : libsigsegv-2.14-3.fc37.i686                        103/137 
  Installing       : gawk-5.1.1-4.fc37.i686                             104/137 
  Installing       : libverto-0.3.2-4.fc37.i686                         105/137 
  Installing       : krb5-libs-1.20.1-3.fc38.i686                       106/137 
  Installing       : libtirpc-1.3.3-0.fc37.i686                         107/137 
  Installing       : libnsl2-2.0.0-4.fc37.i686                          108/137 
  Installing       : python3-3.11.1-1.fc38.i686                         109/137 
  Installing       : python3-libs-3.11.1-1.fc38.i686                    110/137 
  Installing       : python3-distro-1.8.0-1.fc38.noarch                 111/137 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   112/137 
  Installing       : python3-dbus-1.3.2-1.fc38.i686                     113/137 
  Installing       : python3-dateutil-1:2.8.2-4.fc37.noarch             114/137 
  Installing       : python3-libcomps-0.1.18-4.fc37.i686                115/137 
  Installing       : libssh-0.10.4-2.fc38.i686                          116/137 
  Installing       : libcurl-7.87.0-1.fc38.i686                         117/137 
  Installing       : curl-7.87.0-1.fc38.i686                            118/137 
  Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   119/137 
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'

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  Installing       : ima-evm-utils-1.4-6.fc37.i686                      120/137 
  Installing       : libyaml-0.2.5-8.fc37.i686                          121/137 
  Installing       : libmodulemd-2.14.0-4.fc37.i686                     122/137 
  Installing       : npth-1.6-10.fc38.i686                              123/137 
  Installing       : gnupg2-2.3.8-1.fc38.i686                           124/137 
  Installing       : gpgme-1.17.1-3.fc38.i686                           125/137 
  Installing       : librepo-1.15.1-1.fc38.i686                         126/137 
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  Installing       : python3-libdnf-0.68.0-1.fc38.i686                  128/137 
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  Installing       : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       134/137 
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  Installing       : dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: rpm-4.18.0-8.fc38.i686                             137/137 
  Installing       : rpm-4.18.0-8.fc38.i686                             137/137 
  Running scriptlet: filesystem-3.18-2.fc37.i686                        137/137 
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  Running scriptlet: rpm-4.18.0-8.fc38.i686                             137/137 
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  Verifying        : audit-libs-3.0.9-2.fc38.i686                         5/137 
  Verifying        : basesystem-11-14.fc37.noarch                         6/137 
  Verifying        : bash-5.2.9-3.fc38.i686                               7/137 
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  Verifying        : coreutils-9.1-8.fc38.i686                           10/137 
  Verifying        : coreutils-common-9.1-8.fc38.i686                    11/137 
  Verifying        : crypto-policies-20221215-1.gita4c31a3.fc38.noarc    12/137 
  Verifying        : curl-7.87.0-1.fc38.i686                             13/137 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.i686                   14/137 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.i686                      15/137 
  Verifying        : dnf-4.14.0-1.fc38.noarch                            16/137 
  Verifying        : dnf-data-4.14.0-1.fc38.noarch                       17/137 
  Verifying        : dnf-plugins-core-4.3.1-1.fc38.noarch                18/137 
  Verifying        : elfutils-default-yama-scope-0.188-3.fc38.noarch     19/137 
  Verifying        : elfutils-libelf-0.188-3.fc38.i686                   20/137 
  Verifying        : elfutils-libs-0.188-3.fc38.i686                     21/137 
  Verifying        : expat-2.5.0-1.fc38.i686                             22/137 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       23/137 
  Verifying        : fedora-release-38-0.6.noarch                        24/137 
  Verifying        : fedora-release-common-38-0.6.noarch                 25/137 
  Verifying        : fedora-release-identity-basic-38-0.6.noarch         26/137 
  Verifying        : fedora-repos-38-0.3.noarch                          27/137 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  28/137 
  Verifying        : file-libs-5.42-4.fc37.i686                          29/137 
  Verifying        : filesystem-3.18-2.fc37.i686                         30/137 
  Verifying        : findutils-1:4.9.0-2.fc37.i686                       31/137 
  Verifying        : gawk-5.1.1-4.fc37.i686                              32/137 
  Verifying        : gdbm-libs-1:1.23-2.fc37.i686                        33/137 
  Verifying        : glib2-2.74.1-2.fc38.i686                            34/137 
  Verifying        : glibc-2.36.9000-19.fc38.i686                        35/137 
  Verifying        : glibc-common-2.36.9000-19.fc38.i686                 36/137 
  Verifying        : glibc-minimal-langpack-2.36.9000-19.fc38.i686       37/137 
  Verifying        : gmp-1:6.2.1-3.fc37.i686                             38/137 
  Verifying        : gnupg2-2.3.8-1.fc38.i686                            39/137 
  Verifying        : gnutls-3.7.8-9.fc38.i686                            40/137 
  Verifying        : gpgme-1.17.1-3.fc38.i686                            41/137 
  Verifying        : grep-3.8-1.fc38.i686                                42/137 
  Verifying        : ima-evm-utils-1.4-6.fc37.i686                       43/137 
  Verifying        : json-c-0.16-3.fc38.i686                             44/137 
  Verifying        : keyutils-libs-1.6.1-5.fc37.i686                     45/137 
  Verifying        : krb5-libs-1.20.1-3.fc38.i686                        46/137 
  Verifying        : libacl-2.3.1-4.fc37.i686                            47/137 
  Verifying        : libarchive-3.6.1-3.fc38.i686                        48/137 
  Verifying        : libassuan-2.5.5-5.fc37.i686                         49/137 
  Verifying        : libattr-2.5.1-5.fc37.i686                           50/137 
  Verifying        : libb2-0.98.1-7.fc37.i686                            51/137 
  Verifying        : libblkid-2.38.1-3.fc38.i686                         52/137 
  Verifying        : libbrotli-1.0.9-9.fc37.i686                         53/137 
  Verifying        : libcap-2.48-5.fc37.i686                             54/137 
  Verifying        : libcap-ng-0.8.3-4.fc38.i686                         55/137 
  Verifying        : libcom_err-1.46.5-3.fc37.i686                       56/137 
  Verifying        : libcomps-0.1.18-4.fc37.i686                         57/137 
  Verifying        : libcurl-7.87.0-1.fc38.i686                          58/137 
  Verifying        : libdnf-0.68.0-1.fc38.i686                           59/137 
  Verifying        : libevent-2.1.12-7.fc37.i686                         60/137 
  Verifying        : libffi-3.4.4-1.fc38.i686                            61/137 
  Verifying        : libfsverity-1.4-8.fc37.i686                         62/137 
  Verifying        : libgcrypt-1.10.1-6.fc38.i686                        63/137 
  Verifying        : libgpg-error-1.46-1.fc38.i686                       64/137 
  Verifying        : libidn2-2.3.4-1.fc38.i686                           65/137 
  Verifying        : libksba-1.6.3-1.fc38.i686                           66/137 
  Verifying        : libmodulemd-2.14.0-4.fc37.i686                      67/137 
  Verifying        : libmount-2.38.1-3.fc38.i686                         68/137 
  Verifying        : libnghttp2-1.51.0-1.fc38.i686                       69/137 
  Verifying        : libnsl2-2.0.0-4.fc37.i686                           70/137 
  Verifying        : libpsl-0.21.2-1.fc38.i686                           71/137 
  Verifying        : librepo-1.15.1-1.fc38.i686                          72/137 
  Verifying        : libreport-filesystem-2.17.6-1.fc38.noarch           73/137 
  Verifying        : libselinux-3.5-0.rc1.1.fc38.i686                    74/137 
  Verifying        : libsemanage-3.5-0.rc1.1.fc38.i686                   75/137 
  Verifying        : libsepol-3.5-0.rc1.1.fc38.i686                      76/137 
  Verifying        : libsigsegv-2.14-3.fc37.i686                         77/137 
  Verifying        : libsmartcols-2.38.1-3.fc38.i686                     78/137 
  Verifying        : libsolv-0.7.22-3.fc37.i686                          79/137 
  Verifying        : libssh-0.10.4-2.fc38.i686                           80/137 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  81/137 
  Verifying        : libtasn1-4.19.0-1.fc38.i686                         82/137 
  Verifying        : libtirpc-1.3.3-0.fc37.i686                          83/137 
  Verifying        : libunistring-1.0-2.fc37.i686                        84/137 
  Verifying        : libuuid-2.38.1-3.fc38.i686                          85/137 
  Verifying        : libverto-0.3.2-4.fc37.i686                          86/137 
  Verifying        : libxcrypt-4.4.33-5.fc38.i686                        87/137 
  Verifying        : libxml2-2.10.3-2.fc38.i686                          88/137 
  Verifying        : libyaml-0.2.5-8.fc37.i686                           89/137 
  Verifying        : libzstd-1.5.2-3.fc37.i686                           90/137 
  Verifying        : lua-libs-5.4.4-6.fc38.i686                          91/137 
  Verifying        : lz4-libs-1.9.3-5.fc37.i686                          92/137 
  Verifying        : mpdecimal-2.5.1-4.fc37.i686                         93/137 
  Verifying        : mpfr-4.1.1-2.fc38.i686                              94/137 
  Verifying        : ncurses-base-6.3-5.20221126.fc38.noarch             95/137 
  Verifying        : ncurses-libs-6.3-5.20221126.fc38.i686               96/137 
  Verifying        : nettle-3.8-2.fc37.i686                              97/137 
  Verifying        : npth-1.6-10.fc38.i686                               98/137 
  Verifying        : openldap-2.6.3-1.fc38.i686                          99/137 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.i686                   100/137 
  Verifying        : p11-kit-0.24.1-5.fc38.i686                         101/137 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.i686                   102/137 
  Verifying        : pcre2-10.40-1.fc37.1.i686                          103/137 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 104/137 
  Verifying        : popt-1.19-1.fc38.i686                              105/137 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     106/137 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch              107/137 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch       108/137 
  Verifying        : python3-3.11.1-1.fc38.i686                         109/137 
  Verifying        : python3-dateutil-1:2.8.2-4.fc37.noarch             110/137 
  Verifying        : python3-dbus-1.3.2-1.fc38.i686                     111/137 
  Verifying        : python3-distro-1.8.0-1.fc38.noarch                 112/137 
  Verifying        : python3-dnf-4.14.0-1.fc38.noarch                   113/137 
  Verifying        : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       114/137 
  Verifying        : python3-gpg-1.17.1-3.fc38.i686                     115/137 
  Verifying        : python3-hawkey-0.68.0-1.fc38.i686                  116/137 
  Verifying        : python3-libcomps-0.1.18-4.fc37.i686                117/137 
  Verifying        : python3-libdnf-0.68.0-1.fc38.i686                  118/137 
  Verifying        : python3-libs-3.11.1-1.fc38.i686                    119/137 
  Verifying        : python3-rpm-4.18.0-8.fc38.i686                     120/137 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   121/137 
  Verifying        : readline-8.2-2.fc38.i686                           122/137 
  Verifying        : rpm-4.18.0-8.fc38.i686                             123/137 
  Verifying        : rpm-build-libs-4.18.0-8.fc38.i686                  124/137 
  Verifying        : rpm-libs-4.18.0-8.fc38.i686                        125/137 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.i686                      126/137 
  Verifying        : rpm-sign-libs-4.18.0-8.fc38.i686                   127/137 
  Verifying        : sed-4.8-11.fc37.i686                               128/137 
  Verifying        : setup-2.14.3-1.fc38.noarch                         129/137 
  Verifying        : shadow-utils-2:4.13-3.fc38.i686                    130/137 
  Verifying        : sqlite-libs-3.40.0-1.fc38.i686                     131/137 
  Verifying        : systemd-libs-252.4-598.fc38.i686                   132/137 
  Verifying        : tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   133/137 
  Verifying        : tzdata-2022g-1.fc38.noarch                         134/137 
  Verifying        : xz-libs-5.2.9-1.fc38.i686                          135/137 
  Verifying        : zchunk-libs-1.2.3-1.fc38.i686                      136/137 
  Verifying        : zlib-1.2.13-1.fc38.i686                            137/137 
Installed products updated.

Installed:
  alternatives-1.21-1.fc38.i686                                                 
  audit-libs-3.0.9-2.fc38.i686                                                  
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.i686                                                        
  bzip2-libs-1.0.8-12.fc37.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.i686                                                     
  coreutils-common-9.1-8.fc38.i686                                              
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.i686                                                       
  cyrus-sasl-lib-2.1.28-8.fc38.i686                                             
  dbus-libs-1:1.14.4-1.fc38.i686                                                
  dnf-4.14.0-1.fc38.noarch                                                      
  dnf-data-4.14.0-1.fc38.noarch                                                 
  dnf-plugins-core-4.3.1-1.fc38.noarch                                          
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.i686                                             
  elfutils-libs-0.188-3.fc38.i686                                               
  expat-2.5.0-1.fc38.i686                                                       
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-4.fc37.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc37.i686                                                 
  gawk-5.1.1-4.fc37.i686                                                        
  gdbm-libs-1:1.23-2.fc37.i686                                                  
  glib2-2.74.1-2.fc38.i686                                                      
  glibc-2.36.9000-19.fc38.i686                                                  
  glibc-common-2.36.9000-19.fc38.i686                                           
  glibc-minimal-langpack-2.36.9000-19.fc38.i686                                 
  gmp-1:6.2.1-3.fc37.i686                                                       
  gnupg2-2.3.8-1.fc38.i686                                                      
  gnutls-3.7.8-9.fc38.i686                                                      
  gpgme-1.17.1-3.fc38.i686                                                      
  grep-3.8-1.fc38.i686                                                          
  ima-evm-utils-1.4-6.fc37.i686                                                 
  json-c-0.16-3.fc38.i686                                                       
  keyutils-libs-1.6.1-5.fc37.i686                                               
  krb5-libs-1.20.1-3.fc38.i686                                                  
  libacl-2.3.1-4.fc37.i686                                                      
  libarchive-3.6.1-3.fc38.i686                                                  
  libassuan-2.5.5-5.fc37.i686                                                   
  libattr-2.5.1-5.fc37.i686                                                     
  libb2-0.98.1-7.fc37.i686                                                      
  libblkid-2.38.1-3.fc38.i686                                                   
  libbrotli-1.0.9-9.fc37.i686                                                   
  libcap-2.48-5.fc37.i686                                                       
  libcap-ng-0.8.3-4.fc38.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcomps-0.1.18-4.fc37.i686                                                   
  libcurl-7.87.0-1.fc38.i686                                                    
  libdnf-0.68.0-1.fc38.i686                                                     
  libevent-2.1.12-7.fc37.i686                                                   
  libffi-3.4.4-1.fc38.i686                                                      
  libfsverity-1.4-8.fc37.i686                                                   
  libgcc-13.0.0-0.4.fc38.i686                                                   
  libgcrypt-1.10.1-6.fc38.i686                                                  
  libgomp-13.0.0-0.4.fc38.i686                                                  
  libgpg-error-1.46-1.fc38.i686                                                 
  libidn2-2.3.4-1.fc38.i686                                                     
  libksba-1.6.3-1.fc38.i686                                                     
  libmodulemd-2.14.0-4.fc37.i686                                                
  libmount-2.38.1-3.fc38.i686                                                   
  libnghttp2-1.51.0-1.fc38.i686                                                 
  libnsl2-2.0.0-4.fc37.i686                                                     
  libpsl-0.21.2-1.fc38.i686                                                     
  librepo-1.15.1-1.fc38.i686                                                    
  libreport-filesystem-2.17.6-1.fc38.noarch                                     
  libselinux-3.5-0.rc1.1.fc38.i686                                              
  libsemanage-3.5-0.rc1.1.fc38.i686                                             
  libsepol-3.5-0.rc1.1.fc38.i686                                                
  libsigsegv-2.14-3.fc37.i686                                                   
  libsmartcols-2.38.1-3.fc38.i686                                               
  libsolv-0.7.22-3.fc37.i686                                                    
  libssh-0.10.4-2.fc38.i686                                                     
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.i686                                                
  libtasn1-4.19.0-1.fc38.i686                                                   
  libtirpc-1.3.3-0.fc37.i686                                                    
  libunistring-1.0-2.fc37.i686                                                  
  libuuid-2.38.1-3.fc38.i686                                                    
  libverto-0.3.2-4.fc37.i686                                                    
  libxcrypt-4.4.33-5.fc38.i686                                                  
  libxml2-2.10.3-2.fc38.i686                                                    
  libyaml-0.2.5-8.fc37.i686                                                     
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-6.fc38.i686                                                    
  lz4-libs-1.9.3-5.fc37.i686                                                    
  mpdecimal-2.5.1-4.fc37.i686                                                   
  mpfr-4.1.1-2.fc38.i686                                                        
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.i686                                         
  nettle-3.8-2.fc37.i686                                                        
  npth-1.6-10.fc38.i686                                                         
  openldap-2.6.3-1.fc38.i686                                                    
  openssl-libs-1:3.0.5-6.fc38.i686                                              
  p11-kit-0.24.1-5.fc38.i686                                                    
  p11-kit-trust-0.24.1-5.fc38.i686                                              
  pcre2-10.40-1.fc37.1.i686                                                     
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  popt-1.19-1.fc38.i686                                                         
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-1.fc38.i686                                                    
  python3-dateutil-1:2.8.2-4.fc37.noarch                                        
  python3-dbus-1.3.2-1.fc38.i686                                                
  python3-distro-1.8.0-1.fc38.noarch                                            
  python3-dnf-4.14.0-1.fc38.noarch                                              
  python3-dnf-plugins-core-4.3.1-1.fc38.noarch                                  
  python3-gpg-1.17.1-3.fc38.i686                                                
  python3-hawkey-0.68.0-1.fc38.i686                                             
  python3-libcomps-0.1.18-4.fc37.i686                                           
  python3-libdnf-0.68.0-1.fc38.i686                                             
  python3-libs-3.11.1-1.fc38.i686                                               
  python3-rpm-4.18.0-8.fc38.i686                                                
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.2-2.fc38.i686                                                      
  rpm-4.18.0-8.fc38.i686                                                        
  rpm-build-libs-4.18.0-8.fc38.i686                                             
  rpm-libs-4.18.0-8.fc38.i686                                                   
  rpm-sequoia-1.2.0-1.fc38.i686                                                 
  rpm-sign-libs-4.18.0-8.fc38.i686                                              
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.i686                                               
  sqlite-libs-3.40.0-1.fc38.i686                                                
  systemd-libs-252.4-598.fc38.i686                                              
  tpm2-tss-4.0.0-0.1.rc2.fc38.i686                                              
  tzdata-2022g-1.fc38.noarch                                                    
  xz-libs-5.2.9-1.fc38.i686                                                     
  zchunk-libs-1.2.3-1.fc38.i686                                                 
  zlib-1.2.13-1.fc38.i686                                                       

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1672321733.292103/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  12 kB/s | 3.0 kB     00:00    
Copr repository                                 8.9 MB/s | 2.7 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe  11 kB/s | 3.0 kB     00:00    
local                                            15 kB/s | 3.8 kB     00:00    
Dependencies resolved.
=========================================================================================================================
 Package                         Arch    Version                    Repository                                       Size
=========================================================================================================================
Installing group/module packages:
 bash                            i686    5.2.9-3.fc38               local                                           1.8 M
 bzip2                           i686    1.0.8-12.fc37              local                                            53 k
 coreutils                       i686    9.1-8.fc38                 local                                           1.1 M
 cpio                            i686    2.13-13.fc38               local                                           275 k
 diffutils                       i686    3.8-3.fc37                 local                                           375 k
 fedora-release                  noarch  38-0.6                     local                                            11 k
 findutils                       i686    1:4.9.0-2.fc37             local                                           492 k
 gawk                            i686    5.1.1-4.fc37               local                                           1.0 M
 glibc-minimal-langpack          i686    2.36.9000-19.fc38          local                                            30 k
 grep                            i686    3.8-1.fc38                 local                                           289 k
 gzip                            i686    1.12-2.fc37                local                                           157 k
 info                            i686    7.0.1-1.fc38               local                                           183 k
 patch                           i686    2.7.6-17.fc37              local                                           137 k
 redhat-rpm-config               noarch  236-1.fc38                 local                                            74 k
 rpm-build                       i686    4.18.0-8.fc38              local                                            69 k
 sed                             i686    4.8-11.fc37                local                                           300 k
 shadow-utils                    i686    2:4.13-3.fc38              local                                           1.2 M
 tar                             i686    2:1.34-5.fc38              local                                           892 k
 unzip                           i686    6.0-58.fc38                local                                           177 k
 util-linux                      i686    2.38.1-3.fc38              local                                           2.3 M
 which                           i686    2.21-36.fc38               local                                            42 k
 xz                              i686    5.2.9-1.fc38               local                                           300 k
Installing dependencies:
 alternatives                    i686    1.21-1.fc38                local                                            38 k
 ansible-srpm-macros             noarch  1-8.1.fc38                 local                                           8.6 k
 audit-libs                      i686    3.0.9-2.fc38               local                                           122 k
 authselect                      i686    1.4.2-1.fc38               local                                           140 k
 authselect-libs                 i686    1.4.2-1.fc38               local                                           238 k
 basesystem                      noarch  11-14.fc37                 local                                           7.0 k
 binutils                        i686    2.39-6.fc38                local                                           5.6 M
 binutils-gold                   i686    2.39-6.fc38                local                                           841 k
 bzip2-libs                      i686    1.0.8-12.fc37              local                                            41 k
 ca-certificates                 noarch  2022.2.54-5.fc37           local                                           829 k
 coreutils-common                i686    9.1-8.fc38                 local                                           2.0 M
 cracklib                        i686    2.9.7-30.fc38              local                                            81 k
 crypto-policies                 noarch  20221215-1.gita4c31a3.fc38 local                                            63 k
 curl                            i686    7.87.0-1.fc38              local                                           347 k
 cyrus-sasl-lib                  i686    2.1.28-8.fc38              local                                           857 k
 debugedit                       i686    5.0-5.fc37                 local                                            78 k
 dwz                             i686    0.15-1.fc38                local                                           144 k
 ed                              i686    1.18-2.fc37                local                                            78 k
 efi-srpm-macros                 noarch  5-6.fc37                   local                                            22 k
 elfutils                        i686    0.188-3.fc38               local                                           540 k
 elfutils-debuginfod-client      i686    0.188-3.fc38               local                                            41 k
 elfutils-default-yama-scope     noarch  0.188-3.fc38               local                                            15 k
 elfutils-libelf                 i686    0.188-3.fc38               local                                           203 k
 elfutils-libs                   i686    0.188-3.fc38               local                                           286 k
 fedora-gpg-keys                 noarch  38-0.3                     local                                           115 k
 fedora-release-common           noarch  38-0.6                     local                                            21 k
 fedora-release-identity-basic   noarch  38-0.6                     local                                            11 k
 fedora-repos                    noarch  38-0.3                     local                                            10 k
 fedora-repos-rawhide            noarch  38-0.3                     local                                           9.7 k
 file                            i686    5.42-4.fc37                local                                            49 k
 file-libs                       i686    5.42-4.fc37                local                                           684 k
 filesystem                      i686    3.18-2.fc37                local                                           1.1 M
 fonts-srpm-macros               noarch  1:2.0.5-10.fc38            local                                            26 k
 fpc-srpm-macros                 noarch  1.3-6.fc37                 local                                           7.7 k
 gdb-minimal                     i686    12.1-10.fc38               local                                           3.9 M
 gdbm-libs                       i686    1:1.23-2.fc37              local                                            60 k
 ghc-srpm-macros                 noarch  1.5.0-7.fc37               local                                           7.8 k
 glibc                           i686    2.36.9000-19.fc38          local                                           1.9 M
 glibc-common                    i686    2.36.9000-19.fc38          local                                           315 k
 glibc-gconv-extra               i686    2.36.9000-19.fc38          local                                           1.6 M
 gmp                             i686    1:6.2.1-3.fc37             local                                           305 k
 gnat-srpm-macros                noarch  4-16.fc37                  local                                           8.3 k
 go-srpm-macros                  noarch  3.2.0-1.fc38               local                                            27 k
 jansson                         i686    2.13.1-5.fc37              local                                            46 k
 kernel-srpm-macros              noarch  1.0-15.fc37                local                                           9.4 k
 keyutils-libs                   i686    1.6.1-5.fc37               local                                            32 k
 krb5-libs                       i686    1.20.1-3.fc38              local                                           763 k
 libacl                          i686    2.3.1-4.fc37               local                                            25 k
 libarchive                      i686    3.6.1-3.fc38               local                                           443 k
 libattr                         i686    2.5.1-5.fc37               local                                            18 k
 libblkid                        i686    2.38.1-3.fc38              local                                           116 k
 libbrotli                       i686    1.0.9-9.fc37               local                                           317 k
 libcap                          i686    2.48-5.fc37                local                                            68 k
 libcap-ng                       i686    0.8.3-4.fc38               local                                            33 k
 libcom_err                      i686    1.46.5-3.fc37              local                                            26 k
 libcurl                         i686    7.87.0-1.fc38              local                                           327 k
 libdb                           i686    5.3.28-54.fc38             local                                           827 k
 libeconf                        i686    0.4.0-4.fc37               local                                            29 k
 libevent                        i686    2.1.12-7.fc37              local                                           279 k
 libfdisk                        i686    2.38.1-3.fc38              local                                           173 k
 libffi                          i686    3.4.4-1.fc38               local                                            36 k
 libgcc                          i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  101 k
 libgomp                         i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  304 k
 libidn2                         i686    2.3.4-1.fc38               local                                           154 k
 libmount                        i686    2.38.1-3.fc38              local                                           141 k
 libnghttp2                      i686    1.51.0-1.fc38              local                                            80 k
 libnsl2                         i686    2.0.0-4.fc37               local                                            31 k
 libpkgconf                      i686    1.8.0-3.fc37               local                                            38 k
 libpsl                          i686    0.21.2-1.fc38              local                                            66 k
 libpwquality                    i686    1.4.5-1.fc38               local                                           108 k
 libselinux                      i686    3.5-0.rc1.1.fc38           local                                            91 k
 libsemanage                     i686    3.5-0.rc1.1.fc38           local                                           128 k
 libsepol                        i686    3.5-0.rc1.1.fc38           local                                           336 k
 libsigsegv                      i686    2.14-3.fc37                local                                            27 k
 libsmartcols                    i686    2.38.1-3.fc38              local                                            65 k
 libssh                          i686    0.10.4-2.fc38              local                                           222 k
 libssh-config                   noarch  0.10.4-2.fc38              local                                           8.8 k
 libstdc++                       i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  857 k
 libtasn1                        i686    4.19.0-1.fc38              local                                            76 k
 libtirpc                        i686    1.3.3-0.fc37               local                                           101 k
 libunistring                    i686    1.0-2.fc37                 local                                           551 k
 libutempter                     i686    1.2.1-7.fc37               local                                            26 k
 libuuid                         i686    2.38.1-3.fc38              local                                            28 k
 libverto                        i686    0.3.2-4.fc37               local                                            21 k
 libxcrypt                       i686    4.4.33-5.fc38              local                                           123 k
 libxml2                         i686    2.10.3-2.fc38              local                                           745 k
 libzstd                         i686    1.5.2-3.fc37               local                                           274 k
 lua-libs                        i686    5.4.4-6.fc38               local                                           148 k
 lua-srpm-macros                 noarch  1-7.fc37                   local                                           8.8 k
 lz4-libs                        i686    1.9.3-5.fc37               local                                            72 k
 mpfr                            i686    4.1.1-2.fc38               local                                           637 k
 ncurses-base                    noarch  6.3-5.20221126.fc38        local                                            61 k
 ncurses-libs                    i686    6.3-5.20221126.fc38        local                                           348 k
 nettle                          i686    3.8-2.fc37                 local                                           430 k
 nim-srpm-macros                 noarch  3-7.fc37                   local                                           8.4 k
 ocaml-srpm-macros               noarch  7-2.fc37                   local                                            13 k
 openblas-srpm-macros            noarch  2-12.fc37                  local                                           7.5 k
 openldap                        i686    2.6.3-1.fc38               local                                           273 k
 openssl-libs                    i686    1:3.0.5-6.fc38             local                                           2.1 M
 p11-kit                         i686    0.24.1-5.fc38              local                                           335 k
 p11-kit-trust                   i686    0.24.1-5.fc38              local                                           135 k
 package-notes-srpm-macros       noarch  0.5-6.fc38                 local                                            11 k
 pam                             i686    1.5.2-15.fc38              local                                           535 k
 pam-libs                        i686    1.5.2-15.fc38              local                                            60 k
 pcre2                           i686    10.40-1.fc37.1             local                                           234 k
 pcre2-syntax                    noarch  10.40-1.fc37.1             local                                           142 k
 perl-srpm-macros                noarch  1-47.fc38                  local                                           8.2 k
 pkgconf                         i686    1.8.0-3.fc37               local                                            42 k
 pkgconf-m4                      noarch  1.8.0-3.fc37               local                                            14 k
 pkgconf-pkg-config              i686    1.8.0-3.fc37               local                                            10 k
 popt                            i686    1.19-1.fc38                local                                            61 k
 publicsuffix-list-dafsa         noarch  20221208-1.fc38            local                                            59 k
 python-srpm-macros              noarch  3.11-6.fc38                local                                            25 k
 qt5-srpm-macros                 noarch  5.15.7-1.fc38              local                                           7.9 k
 readline                        i686    8.2-2.fc38                 local                                           218 k
 rpm                             i686    4.18.0-8.fc38              local                                           543 k
 rpm-build-libs                  i686    4.18.0-8.fc38              local                                           102 k
 rpm-libs                        i686    4.18.0-8.fc38              local                                           341 k
 rpm-sequoia                     i686    1.2.0-1.fc38               local                                           924 k
 rpmautospec-rpm-macros          noarch  0.3.1-1.fc38               local                                           8.8 k
 rust-srpm-macros                noarch  23-1.fc38                  local                                           9.4 k
 setup                           noarch  2.14.3-1.fc38              local                                           146 k
 sqlite-libs                     i686    3.40.0-1.fc38              local                                           705 k
 systemd-libs                    i686    252.4-598.fc38             local                                           662 k
 tzdata                          noarch  2022g-1.fc38               local                                           432 k
 util-linux-core                 i686    2.38.1-3.fc38              local                                           467 k
 xxhash-libs                     i686    0.8.1-3.fc37               local                                            59 k
 xz-libs                         i686    5.2.9-1.fc38               local                                           101 k
 zip                             i686    3.0-35.fc38                local                                           263 k
 zlib                            i686    1.2.13-1.fc38              local                                            92 k
 zstd                            i686    1.5.2-3.fc37               local                                           418 k
Installing Groups:
 build                                                                                                                   

Transaction Summary
=========================================================================================================================
Install  153 Packages

Total size: 53 M
Installed size: 179 M
Downloading Packages:
[SKIPPED] libgcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libgomp-13.0.0-0.4.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libstdc++-13.0.0-0.4.fc38.i686.rpm: Already downloaded               
[SKIPPED] alternatives-1.21-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded        
[SKIPPED] audit-libs-3.0.9-2.fc38.i686.rpm: Already downloaded                 
[SKIPPED] authselect-1.4.2-1.fc38.i686.rpm: Already downloaded                 
[SKIPPED] authselect-libs-1.4.2-1.fc38.i686.rpm: Already downloaded            
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded                 
[SKIPPED] bash-5.2.9-3.fc38.i686.rpm: Already downloaded                       
[SKIPPED] binutils-2.39-6.fc38.i686.rpm: Already downloaded                    
[SKIPPED] binutils-gold-2.39-6.fc38.i686.rpm: Already downloaded               
[SKIPPED] bzip2-1.0.8-12.fc37.i686.rpm: Already downloaded                     
[SKIPPED] bzip2-libs-1.0.8-12.fc37.i686.rpm: Already downloaded                
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded      
[SKIPPED] coreutils-9.1-8.fc38.i686.rpm: Already downloaded                    
[SKIPPED] coreutils-common-9.1-8.fc38.i686.rpm: Already downloaded             
[SKIPPED] cpio-2.13-13.fc38.i686.rpm: Already downloaded                       
[SKIPPED] cracklib-2.9.7-30.fc38.i686.rpm: Already downloaded                  
[SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded
[SKIPPED] curl-7.87.0-1.fc38.i686.rpm: Already downloaded                      
[SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm: Already downloaded            
[SKIPPED] debugedit-5.0-5.fc37.i686.rpm: Already downloaded                    
[SKIPPED] diffutils-3.8-3.fc37.i686.rpm: Already downloaded                    
[SKIPPED] dwz-0.15-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] ed-1.18-2.fc37.i686.rpm: Already downloaded                          
[SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded              
[SKIPPED] elfutils-0.188-3.fc38.i686.rpm: Already downloaded                   
[SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.i686.rpm: Already downloaded 
[SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.188-3.fc38.i686.rpm: Already downloaded            
[SKIPPED] elfutils-libs-0.188-3.fc38.i686.rpm: Already downloaded              
[SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded                
[SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded                 
[SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded          
[SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded  
[SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded                   
[SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded           
[SKIPPED] file-5.42-4.fc37.i686.rpm: Already downloaded                        
[SKIPPED] file-libs-5.42-4.fc37.i686.rpm: Already downloaded                   
[SKIPPED] filesystem-3.18-2.fc37.i686.rpm: Already downloaded                  
[SKIPPED] findutils-4.9.0-2.fc37.i686.rpm: Already downloaded                  
[SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded       
[SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded            
[SKIPPED] gawk-5.1.1-4.fc37.i686.rpm: Already downloaded                       
[SKIPPED] gdb-minimal-12.1-10.fc38.i686.rpm: Already downloaded                
[SKIPPED] gdbm-libs-1.23-2.fc37.i686.rpm: Already downloaded                   
[SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded          
[SKIPPED] glibc-2.36.9000-19.fc38.i686.rpm: Already downloaded                 
[SKIPPED] glibc-common-2.36.9000-19.fc38.i686.rpm: Already downloaded          
[SKIPPED] glibc-gconv-extra-2.36.9000-19.fc38.i686.rpm: Already downloaded     
[SKIPPED] glibc-minimal-langpack-2.36.9000-19.fc38.i686.rpm: Already downloaded
[SKIPPED] gmp-6.2.1-3.fc37.i686.rpm: Already downloaded                        
[SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded            
[SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded           
[SKIPPED] grep-3.8-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] gzip-1.12-2.fc37.i686.rpm: Already downloaded                        
[SKIPPED] info-7.0.1-1.fc38.i686.rpm: Already downloaded                       
[SKIPPED] jansson-2.13.1-5.fc37.i686.rpm: Already downloaded                   
[SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded        
[SKIPPED] keyutils-libs-1.6.1-5.fc37.i686.rpm: Already downloaded              
[SKIPPED] krb5-libs-1.20.1-3.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libacl-2.3.1-4.fc37.i686.rpm: Already downloaded                     
[SKIPPED] libarchive-3.6.1-3.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libattr-2.5.1-5.fc37.i686.rpm: Already downloaded                    
[SKIPPED] libblkid-2.38.1-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libbrotli-1.0.9-9.fc37.i686.rpm: Already downloaded                  
[SKIPPED] libcap-2.48-5.fc37.i686.rpm: Already downloaded                      
[SKIPPED] libcap-ng-0.8.3-4.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libcom_err-1.46.5-3.fc37.i686.rpm: Already downloaded                
[SKIPPED] libcurl-7.87.0-1.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libdb-5.3.28-54.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libeconf-0.4.0-4.fc37.i686.rpm: Already downloaded                   
[SKIPPED] libevent-2.1.12-7.fc37.i686.rpm: Already downloaded                  
[SKIPPED] libfdisk-2.38.1-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libffi-3.4.4-1.fc38.i686.rpm: Already downloaded                     
[SKIPPED] libidn2-2.3.4-1.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libmount-2.38.1-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libnghttp2-1.51.0-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] libnsl2-2.0.0-4.fc37.i686.rpm: Already downloaded                    
[SKIPPED] libpkgconf-1.8.0-3.fc37.i686.rpm: Already downloaded                 
[SKIPPED] libpsl-0.21.2-1.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libpwquality-1.4.5-1.fc38.i686.rpm: Already downloaded               
[SKIPPED] libselinux-3.5-0.rc1.1.fc38.i686.rpm: Already downloaded             
[SKIPPED] libsemanage-3.5-0.rc1.1.fc38.i686.rpm: Already downloaded            
[SKIPPED] libsepol-3.5-0.rc1.1.fc38.i686.rpm: Already downloaded               
[SKIPPED] libsigsegv-2.14-3.fc37.i686.rpm: Already downloaded                  
[SKIPPED] libsmartcols-2.38.1-3.fc38.i686.rpm: Already downloaded              
[SKIPPED] libssh-0.10.4-2.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded           
[SKIPPED] libtasn1-4.19.0-1.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libtirpc-1.3.3-0.fc37.i686.rpm: Already downloaded                   
[SKIPPED] libunistring-1.0-2.fc37.i686.rpm: Already downloaded                 
[SKIPPED] libutempter-1.2.1-7.fc37.i686.rpm: Already downloaded                
[SKIPPED] libuuid-2.38.1-3.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libverto-0.3.2-4.fc37.i686.rpm: Already downloaded                   
[SKIPPED] libxcrypt-4.4.33-5.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libxml2-2.10.3-2.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libzstd-1.5.2-3.fc37.i686.rpm: Already downloaded                    
[SKIPPED] lua-libs-5.4.4-6.fc38.i686.rpm: Already downloaded                   
[SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] lz4-libs-1.9.3-5.fc37.i686.rpm: Already downloaded                   
[SKIPPED] mpfr-4.1.1-2.fc38.i686.rpm: Already downloaded                       
[SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded      
[SKIPPED] ncurses-libs-6.3-5.20221126.fc38.i686.rpm: Already downloaded        
[SKIPPED] nettle-3.8-2.fc37.i686.rpm: Already downloaded                       
[SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded            
[SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded        
[SKIPPED] openldap-2.6.3-1.fc38.i686.rpm: Already downloaded                   
[SKIPPED] openssl-libs-3.0.5-6.fc38.i686.rpm: Already downloaded               
[SKIPPED] p11-kit-0.24.1-5.fc38.i686.rpm: Already downloaded                   
[SKIPPED] p11-kit-trust-0.24.1-5.fc38.i686.rpm: Already downloaded             
[SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded  
[SKIPPED] pam-1.5.2-15.fc38.i686.rpm: Already downloaded                       
[SKIPPED] pam-libs-1.5.2-15.fc38.i686.rpm: Already downloaded                  
[SKIPPED] patch-2.7.6-17.fc37.i686.rpm: Already downloaded                     
[SKIPPED] pcre2-10.40-1.fc37.1.i686.rpm: Already downloaded                    
[SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded           
[SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded            
[SKIPPED] pkgconf-1.8.0-3.fc37.i686.rpm: Already downloaded                    
[SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded               
[SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.i686.rpm: Already downloaded         
[SKIPPED] popt-1.19-1.fc38.i686.rpm: Already downloaded                        
[SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded        
[SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded         
[SKIPPED] readline-8.2-2.fc38.i686.rpm: Already downloaded                     
[SKIPPED] redhat-rpm-config-236-1.fc38.noarch.rpm: Already downloaded          
[SKIPPED] rpm-4.18.0-8.fc38.i686.rpm: Already downloaded                       
[SKIPPED] rpm-build-4.18.0-8.fc38.i686.rpm: Already downloaded                 
[SKIPPED] rpm-build-libs-4.18.0-8.fc38.i686.rpm: Already downloaded            
[SKIPPED] rpm-libs-4.18.0-8.fc38.i686.rpm: Already downloaded                  
[SKIPPED] rpm-sequoia-1.2.0-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded   
[SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded            
[SKIPPED] sed-4.8-11.fc37.i686.rpm: Already downloaded                         
[SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] shadow-utils-4.13-3.fc38.i686.rpm: Already downloaded                
[SKIPPED] sqlite-libs-3.40.0-1.fc38.i686.rpm: Already downloaded               
[SKIPPED] systemd-libs-252.4-598.fc38.i686.rpm: Already downloaded             
[SKIPPED] tar-1.34-5.fc38.i686.rpm: Already downloaded                         
[SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] unzip-6.0-58.fc38.i686.rpm: Already downloaded                       
[SKIPPED] util-linux-2.38.1-3.fc38.i686.rpm: Already downloaded                
[SKIPPED] util-linux-core-2.38.1-3.fc38.i686.rpm: Already downloaded           
[SKIPPED] which-2.21-36.fc38.i686.rpm: Already downloaded                      
[SKIPPED] xxhash-libs-0.8.1-3.fc37.i686.rpm: Already downloaded                
[SKIPPED] xz-5.2.9-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] xz-libs-5.2.9-1.fc38.i686.rpm: Already downloaded                    
[SKIPPED] zip-3.0-35.fc38.i686.rpm: Already downloaded                         
[SKIPPED] zlib-1.2.13-1.fc38.i686.rpm: Already downloaded                      
[SKIPPED] zstd-1.5.2-3.fc37.i686.rpm: Already downloaded                       
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.i686                            1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.0.0-0.4.fc38.i686                          1/153 
  Running scriptlet: libgcc-13.0.0-0.4.fc38.i686                          1/153 
  Installing       : crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/153 
  Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/153 
  Installing       : fedora-release-identity-basic-38-0.6.noarch          3/153 
  Installing       : tzdata-2022g-1.fc38.noarch                           4/153 
  Installing       : rust-srpm-macros-23-1.fc38.noarch                    5/153 
  Installing       : qt5-srpm-macros-5.15.7-1.fc38.noarch                 6/153 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       7/153 
  Installing       : pkgconf-m4-1.8.0-3.fc37.noarch                       8/153 
  Installing       : perl-srpm-macros-1-47.fc38.noarch                    9/153 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                  10/153 
  Installing       : package-notes-srpm-macros-0.5-6.fc38.noarch         11/153 
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  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.i686               123/153 
  Verifying        : popt-1.19-1.fc38.i686                              124/153 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     125/153 
  Verifying        : python-srpm-macros-3.11-6.fc38.noarch              126/153 
  Verifying        : qt5-srpm-macros-5.15.7-1.fc38.noarch               127/153 
  Verifying        : readline-8.2-2.fc38.i686                           128/153 
  Verifying        : redhat-rpm-config-236-1.fc38.noarch                129/153 
  Verifying        : rpm-4.18.0-8.fc38.i686                             130/153 
  Verifying        : rpm-build-4.18.0-8.fc38.i686                       131/153 
  Verifying        : rpm-build-libs-4.18.0-8.fc38.i686                  132/153 
  Verifying        : rpm-libs-4.18.0-8.fc38.i686                        133/153 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.i686                      134/153 
  Verifying        : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch         135/153 
  Verifying        : rust-srpm-macros-23-1.fc38.noarch                  136/153 
  Verifying        : sed-4.8-11.fc37.i686                               137/153 
  Verifying        : setup-2.14.3-1.fc38.noarch                         138/153 
  Verifying        : shadow-utils-2:4.13-3.fc38.i686                    139/153 
  Verifying        : sqlite-libs-3.40.0-1.fc38.i686                     140/153 
  Verifying        : systemd-libs-252.4-598.fc38.i686                   141/153 
  Verifying        : tar-2:1.34-5.fc38.i686                             142/153 
  Verifying        : tzdata-2022g-1.fc38.noarch                         143/153 
  Verifying        : unzip-6.0-58.fc38.i686                             144/153 
  Verifying        : util-linux-2.38.1-3.fc38.i686                      145/153 
  Verifying        : util-linux-core-2.38.1-3.fc38.i686                 146/153 
  Verifying        : which-2.21-36.fc38.i686                            147/153 
  Verifying        : xxhash-libs-0.8.1-3.fc37.i686                      148/153 
  Verifying        : xz-5.2.9-1.fc38.i686                               149/153 
  Verifying        : xz-libs-5.2.9-1.fc38.i686                          150/153 
  Verifying        : zip-3.0-35.fc38.i686                               151/153 
  Verifying        : zlib-1.2.13-1.fc38.i686                            152/153 
  Verifying        : zstd-1.5.2-3.fc37.i686                             153/153 

Installed:
  alternatives-1.21-1.fc38.i686                                                 
  ansible-srpm-macros-1-8.1.fc38.noarch                                         
  audit-libs-3.0.9-2.fc38.i686                                                  
  authselect-1.4.2-1.fc38.i686                                                  
  authselect-libs-1.4.2-1.fc38.i686                                             
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.i686                                                        
  binutils-2.39-6.fc38.i686                                                     
  binutils-gold-2.39-6.fc38.i686                                                
  bzip2-1.0.8-12.fc37.i686                                                      
  bzip2-libs-1.0.8-12.fc37.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.i686                                                     
  coreutils-common-9.1-8.fc38.i686                                              
  cpio-2.13-13.fc38.i686                                                        
  cracklib-2.9.7-30.fc38.i686                                                   
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.i686                                                       
  cyrus-sasl-lib-2.1.28-8.fc38.i686                                             
  debugedit-5.0-5.fc37.i686                                                     
  diffutils-3.8-3.fc37.i686                                                     
  dwz-0.15-1.fc38.i686                                                          
  ed-1.18-2.fc37.i686                                                           
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.188-3.fc38.i686                                                    
  elfutils-debuginfod-client-0.188-3.fc38.i686                                  
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.i686                                             
  elfutils-libs-0.188-3.fc38.i686                                               
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-4.fc37.i686                                                         
  file-libs-5.42-4.fc37.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc37.i686                                                 
  fonts-srpm-macros-1:2.0.5-10.fc38.noarch                                      
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.i686                                                        
  gdb-minimal-12.1-10.fc38.i686                                                 
  gdbm-libs-1:1.23-2.fc37.i686                                                  
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-19.fc38.i686                                                  
  glibc-common-2.36.9000-19.fc38.i686                                           
  glibc-gconv-extra-2.36.9000-19.fc38.i686                                      
  glibc-minimal-langpack-2.36.9000-19.fc38.i686                                 
  gmp-1:6.2.1-3.fc37.i686                                                       
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.2.0-1.fc38.noarch                                            
  grep-3.8-1.fc38.i686                                                          
  gzip-1.12-2.fc37.i686                                                         
  info-7.0.1-1.fc38.i686                                                        
  jansson-2.13.1-5.fc37.i686                                                    
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.i686                                               
  krb5-libs-1.20.1-3.fc38.i686                                                  
  libacl-2.3.1-4.fc37.i686                                                      
  libarchive-3.6.1-3.fc38.i686                                                  
  libattr-2.5.1-5.fc37.i686                                                     
  libblkid-2.38.1-3.fc38.i686                                                   
  libbrotli-1.0.9-9.fc37.i686                                                   
  libcap-2.48-5.fc37.i686                                                       
  libcap-ng-0.8.3-4.fc38.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcurl-7.87.0-1.fc38.i686                                                    
  libdb-5.3.28-54.fc38.i686                                                     
  libeconf-0.4.0-4.fc37.i686                                                    
  libevent-2.1.12-7.fc37.i686                                                   
  libfdisk-2.38.1-3.fc38.i686                                                   
  libffi-3.4.4-1.fc38.i686                                                      
  libgcc-13.0.0-0.4.fc38.i686                                                   
  libgomp-13.0.0-0.4.fc38.i686                                                  
  libidn2-2.3.4-1.fc38.i686                                                     
  libmount-2.38.1-3.fc38.i686                                                   
  libnghttp2-1.51.0-1.fc38.i686                                                 
  libnsl2-2.0.0-4.fc37.i686                                                     
  libpkgconf-1.8.0-3.fc37.i686                                                  
  libpsl-0.21.2-1.fc38.i686                                                     
  libpwquality-1.4.5-1.fc38.i686                                                
  libselinux-3.5-0.rc1.1.fc38.i686                                              
  libsemanage-3.5-0.rc1.1.fc38.i686                                             
  libsepol-3.5-0.rc1.1.fc38.i686                                                
  libsigsegv-2.14-3.fc37.i686                                                   
  libsmartcols-2.38.1-3.fc38.i686                                               
  libssh-0.10.4-2.fc38.i686                                                     
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.i686                                                
  libtasn1-4.19.0-1.fc38.i686                                                   
  libtirpc-1.3.3-0.fc37.i686                                                    
  libunistring-1.0-2.fc37.i686                                                  
  libutempter-1.2.1-7.fc37.i686                                                 
  libuuid-2.38.1-3.fc38.i686                                                    
  libverto-0.3.2-4.fc37.i686                                                    
  libxcrypt-4.4.33-5.fc38.i686                                                  
  libxml2-2.10.3-2.fc38.i686                                                    
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-6.fc38.i686                                                    
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc37.i686                                                    
  mpfr-4.1.1-2.fc38.i686                                                        
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.i686                                         
  nettle-3.8-2.fc37.i686                                                        
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.i686                                                    
  openssl-libs-1:3.0.5-6.fc38.i686                                              
  p11-kit-0.24.1-5.fc38.i686                                                    
  p11-kit-trust-0.24.1-5.fc38.i686                                              
  package-notes-srpm-macros-0.5-6.fc38.noarch                                   
  pam-1.5.2-15.fc38.i686                                                        
  pam-libs-1.5.2-15.fc38.i686                                                   
  patch-2.7.6-17.fc37.i686                                                      
  pcre2-10.40-1.fc37.1.i686                                                     
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  perl-srpm-macros-1-47.fc38.noarch                                             
  pkgconf-1.8.0-3.fc37.i686                                                     
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.i686                                          
  popt-1.19-1.fc38.i686                                                         
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-srpm-macros-3.11-6.fc38.noarch                                         
  qt5-srpm-macros-5.15.7-1.fc38.noarch                                          
  readline-8.2-2.fc38.i686                                                      
  redhat-rpm-config-236-1.fc38.noarch                                           
  rpm-4.18.0-8.fc38.i686                                                        
  rpm-build-4.18.0-8.fc38.i686                                                  
  rpm-build-libs-4.18.0-8.fc38.i686                                             
  rpm-libs-4.18.0-8.fc38.i686                                                   
  rpm-sequoia-1.2.0-1.fc38.i686                                                 
  rpmautospec-rpm-macros-0.3.1-1.fc38.noarch                                    
  rust-srpm-macros-23-1.fc38.noarch                                             
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.i686                                               
  sqlite-libs-3.40.0-1.fc38.i686                                                
  systemd-libs-252.4-598.fc38.i686                                              
  tar-2:1.34-5.fc38.i686                                                        
  tzdata-2022g-1.fc38.noarch                                                    
  unzip-6.0-58.fc38.i686                                                        
  util-linux-2.38.1-3.fc38.i686                                                 
  util-linux-core-2.38.1-3.fc38.i686                                            
  which-2.21-36.fc38.i686                                                       
  xxhash-libs-0.8.1-3.fc37.i686                                                 
  xz-5.2.9-1.fc38.i686                                                          
  xz-libs-5.2.9-1.fc38.i686                                                     
  zip-3.0-35.fc38.i686                                                          
  zlib-1.2.13-1.fc38.i686                                                       
  zstd-1.5.2-3.fc37.i686                                                        

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: file-libs-5.42-4.fc37.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
libssh-0.10.4-2.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
which-2.21-36.fc38.i686
fedora-gpg-keys-38-0.3.noarch
file-5.42-4.fc37.i686
setup-2.14.3-1.fc38.noarch
libbrotli-1.0.9-9.fc37.i686
pkgconf-m4-1.8.0-3.fc37.noarch
libsigsegv-2.14-3.fc37.i686
gawk-5.1.1-4.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
lua-libs-5.4.4-6.fc38.i686
kernel-srpm-macros-1.0-15.fc37.noarch
libcap-2.48-5.fc37.i686
go-srpm-macros-3.2.0-1.fc38.noarch
gdbm-libs-1.23-2.fc37.i686
gmp-6.2.1-3.fc37.i686
curl-7.87.0-1.fc38.i686
nim-srpm-macros-3-7.fc37.noarch
basesystem-11-14.fc37.noarch
zip-3.0-35.fc38.i686
info-7.0.1-1.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
libverto-0.3.2-4.fc37.i686
binutils-2.39-6.fc38.i686
libcurl-7.87.0-1.fc38.i686
libevent-2.1.12-7.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
xz-5.2.9-1.fc38.i686
zlib-1.2.13-1.fc38.i686
fpc-srpm-macros-1.3-6.fc37.noarch
coreutils-common-9.1-8.fc38.i686
rpm-4.18.0-8.fc38.i686
fedora-release-identity-basic-38-0.6.noarch
util-linux-2.38.1-3.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libidn2-2.3.4-1.fc38.i686
libarchive-3.6.1-3.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
bzip2-1.0.8-12.fc37.i686
authselect-libs-1.4.2-1.fc38.i686
shadow-utils-4.13-3.fc38.i686
xxhash-libs-0.8.1-3.fc37.i686
mpfr-4.1.1-2.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
dwz-0.15-1.fc38.i686
libstdc++-13.0.0-0.4.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
debugedit-5.0-5.fc37.i686
qt5-srpm-macros-5.15.7-1.fc38.noarch
ed-1.18-2.fc37.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
fedora-repos-38-0.3.noarch
tzdata-2022g-1.fc38.noarch
bzip2-libs-1.0.8-12.fc37.i686
keyutils-libs-1.6.1-5.fc37.i686
libsemanage-3.5-0.rc1.1.fc38.i686
lz4-libs-1.9.3-5.fc37.i686
pam-libs-1.5.2-15.fc38.i686
libffi-3.4.4-1.fc38.i686
grep-3.8-1.fc38.i686
gzip-1.12-2.fc37.i686
lua-srpm-macros-1-7.fc37.noarch
ansible-srpm-macros-1-8.1.fc38.noarch
libcom_err-1.46.5-3.fc37.i686
util-linux-core-2.38.1-3.fc38.i686
libeconf-0.4.0-4.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
sed-4.8-11.fc37.i686
pcre2-syntax-10.40-1.fc37.1.noarch
cpio-2.13-13.fc38.i686
pcre2-10.40-1.fc37.1.i686
sqlite-libs-3.40.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libacl-2.3.1-4.fc37.i686
libpsl-0.21.2-1.fc38.i686
fedora-repos-rawhide-38-0.3.noarch
jansson-2.13.1-5.fc37.i686
fonts-srpm-macros-2.0.5-10.fc38.noarch
rpm-build-4.18.0-8.fc38.i686
elfutils-libelf-0.188-3.fc38.i686
libdb-5.3.28-54.fc38.i686
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
diffutils-3.8-3.fc37.i686
rpm-libs-4.18.0-8.fc38.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
libxml2-2.10.3-2.fc38.i686
libattr-2.5.1-5.fc37.i686
libsepol-3.5-0.rc1.1.fc38.i686
cracklib-2.9.7-30.fc38.i686
glibc-2.36.9000-19.fc38.i686
pkgconf-pkg-config-1.8.0-3.fc37.i686
libssh-config-0.10.4-2.fc38.noarch
binutils-gold-2.39-6.fc38.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
libutempter-1.2.1-7.fc37.i686
libgcc-13.0.0-0.4.fc38.i686
libuuid-2.38.1-3.fc38.i686
libselinux-3.5-0.rc1.1.fc38.i686
tar-1.34-5.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
redhat-rpm-config-236-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
libblkid-2.38.1-3.fc38.i686
openldap-2.6.3-1.fc38.i686
unzip-6.0-58.fc38.i686
nettle-3.8-2.fc37.i686
bash-5.2.9-3.fc38.i686
openssl-libs-3.0.5-6.fc38.i686
pam-1.5.2-15.fc38.i686
popt-1.19-1.fc38.i686
patch-2.7.6-17.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
audit-libs-3.0.9-2.fc38.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
gdb-minimal-12.1-10.fc38.i686
findutils-4.9.0-2.fc37.i686
coreutils-9.1-8.fc38.i686
elfutils-0.188-3.fc38.i686
zstd-1.5.2-3.fc37.i686
pkgconf-1.8.0-3.fc37.i686
ncurses-libs-6.3-5.20221126.fc38.i686
ca-certificates-2022.2.54-5.fc37.noarch
elfutils-libs-0.188-3.fc38.i686
libzstd-1.5.2-3.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
p11-kit-0.24.1-5.fc38.i686
glibc-gconv-extra-2.36.9000-19.fc38.i686
rust-srpm-macros-23-1.fc38.noarch
publicsuffix-list-dafsa-20221208-1.fc38.noarch
filesystem-3.18-2.fc37.i686
xz-libs-5.2.9-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libmount-2.38.1-3.fc38.i686
readline-8.2-2.fc38.i686
libunistring-1.0-2.fc37.i686
libpwquality-1.4.5-1.fc38.i686
alternatives-1.21-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
libfdisk-2.38.1-3.fc38.i686
perl-srpm-macros-1-47.fc38.noarch
ocaml-srpm-macros-7-2.fc37.noarch
libsmartcols-2.38.1-3.fc38.i686
authselect-1.4.2-1.fc38.i686
libpkgconf-1.8.0-3.fc37.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1661212800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-13.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-wji9pfqh/mmseq/mmseq.spec) Config(child) 0 minutes 47 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/mmseq-1.0.11-13.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672321733.292103 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-13.fc38.src.rpm)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672321733.292103/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672321733.292103/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1672321733.292103/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  13 kB/s | 3.0 kB     00:00    
Additional repo https_jakub_fedorapeople_org_fe  11 kB/s | 3.0 kB     00:00    
local                                            16 kB/s | 3.8 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for mmseq-1.0.11-13.fc38.src.rpm
Start: build setup for mmseq-1.0.11-13.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1661212800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-13.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  13 kB/s | 3.0 kB     00:00    
Additional repo https_jakub_fedorapeople_org_fe  11 kB/s | 3.0 kB     00:00    
local                                            16 kB/s | 3.8 kB     00:00    
Dependencies resolved.
===============================================================================================================
 Package                     Arch    Version              Repository                                       Size
===============================================================================================================
Installing:
 armadillo-devel             i686    10.8.2-2.fc37        local                                           2.1 M
 boost-devel                 i686    1.78.0-9.fc37        local                                            11 M
 flexiblas-devel             i686    3.2.1-3.fc38         local                                           101 k
 gcc-c++                     i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   13 M
 gsl-devel                   i686    2.7.1-2.fc38         local                                           609 k
 htslib-devel                i686    1.15.1-1.fc38        local                                            99 k
 make                        i686    1:4.3-11.fc37        local                                           540 k
 perl-generators             noarch  1.15-1.fc38          local                                            16 k
 zlib-devel                  i686    1.2.13-1.fc38        local                                            45 k
Installing dependencies:
 SuperLU                     i686    5.3.0-3.fc37         local                                           198 k
 SuperLU-devel               i686    5.3.0-3.fc37         local                                            27 k
 annobin-docs                noarch  10.99-1.0.1.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   93 k
 annobin-plugin-gcc          i686    10.99-1.0.1.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  889 k
 armadillo                   i686    10.8.2-2.fc37        local                                            41 k
 arpack                      i686    3.8.0-5.fc37         local                                           118 k
 arpack-devel                i686    3.8.0-5.fc37         local                                            13 k
 autoconf                    noarch  2.71-4.fc38          local                                           720 k
 automake                    noarch  1.16.5-9.fc37        local                                           675 k
 boost                       i686    1.78.0-9.fc37        local                                            14 k
 boost-atomic                i686    1.78.0-9.fc37        local                                            20 k
 boost-chrono                i686    1.78.0-9.fc37        local                                            28 k
 boost-container             i686    1.78.0-9.fc37        local                                            41 k
 boost-context               i686    1.78.0-9.fc37        local                                            17 k
 boost-contract              i686    1.78.0-9.fc37        local                                            49 k
 boost-coroutine             i686    1.78.0-9.fc37        local                                            23 k
 boost-date-time             i686    1.78.0-9.fc37        local                                            16 k
 boost-fiber                 i686    1.78.0-9.fc37        local                                            45 k
 boost-filesystem            i686    1.78.0-9.fc37        local                                            71 k
 boost-graph                 i686    1.78.0-9.fc37        local                                           157 k
 boost-iostreams             i686    1.78.0-9.fc37        local                                            45 k
 boost-json                  i686    1.78.0-9.fc37        local                                           122 k
 boost-locale                i686    1.78.0-9.fc37        local                                           239 k
 boost-log                   i686    1.78.0-9.fc37        local                                           523 k
 boost-math                  i686    1.78.0-9.fc37        local                                           203 k
 boost-nowide                i686    1.78.0-9.fc37        local                                            22 k
 boost-numpy3                i686    1.78.0-9.fc37        local                                            31 k
 boost-program-options       i686    1.78.0-9.fc37        local                                           115 k
 boost-python3               i686    1.78.0-9.fc37        local                                           103 k
 boost-random                i686    1.78.0-9.fc37        local                                            27 k
 boost-regex                 i686    1.78.0-9.fc37        local                                           116 k
 boost-serialization         i686    1.78.0-9.fc37        local                                           143 k
 boost-stacktrace            i686    1.78.0-9.fc37        local                                            32 k
 boost-system                i686    1.78.0-9.fc37        local                                            16 k
 boost-test                  i686    1.78.0-9.fc37        local                                           252 k
 boost-thread                i686    1.78.0-9.fc37        local                                            63 k
 boost-timer                 i686    1.78.0-9.fc37        local                                            27 k
 boost-type_erasure          i686    1.78.0-9.fc37        local                                            36 k
 boost-wave                  i686    1.78.0-9.fc37        local                                           210 k
 cmake-filesystem            i686    3.25.1-1.fc38        local                                            16 k
 cpp                         i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   11 M
 emacs-filesystem            noarch  1:28.1-3.fc37        local                                           9.5 k
 expat                       i686    2.5.0-1.fc38         local                                           115 k
 flexiblas                   i686    3.2.1-3.fc38         local                                            32 k
 flexiblas-netlib            i686    3.2.1-3.fc38         local                                           3.0 M
 flexiblas-openblas-openmp   i686    3.2.1-3.fc38         local                                            17 k
 gc                          i686    8.2.2-1.fc38         local                                           112 k
 gcc                         i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   34 M
 gcc-gfortran                i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   12 M
 gcc-plugin-annobin          i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   30 k
 glibc-devel                 i686    2.36.9000-19.fc38    local                                            43 k
 glibc-headers-x86           noarch  2.36.9000-19.fc38    local                                           450 k
 groff-base                  i686    1.22.4-10.fc37       local                                           1.0 M
 gsl                         i686    2.7.1-2.fc38         local                                           1.2 M
 guile22                     i686    2.2.7-6.fc37         local                                           6.5 M
 hdf5                        i686    1.12.1-10.fc37       local                                           2.1 M
 hdf5-devel                  i686    1.12.1-10.fc37       local                                           1.3 M
 htslib                      i686    1.15.1-1.fc38        local                                           527 k
 kernel-headers              i686    6.1.0-1.fc38         local                                           1.4 M
 libaec                      i686    1.0.6-3.fc37         local                                            44 k
 libaec-devel                i686    1.0.6-3.fc37         local                                            12 k
 libasan                     i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  491 k
 libatomic                   i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   17 k
 libb2                       i686    0.98.1-7.fc37        local                                            35 k
 libgfortran                 i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  825 k
 libicu                      i686    71.1-2.fc38          local                                            10 M
 libicu-devel                i686    71.1-2.fc38          local                                           843 k
 libmpc                      i686    1.2.1-5.fc37         local                                            65 k
 libquadmath                 i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  225 k
 libquadmath-devel           i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   20 k
 libstdc++-devel             i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  2.4 M
 libtool-ltdl                i686    2.4.7-3.0.1.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   39 k
 libubsan                    i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  219 k
 libxcrypt-devel             i686    4.4.33-5.fc38        local                                            30 k
 m4                          i686    1.4.19-4.fc37        local                                           300 k
 mpdecimal                   i686    2.5.1-4.fc37         local                                           106 k
 ncurses                     i686    6.3-5.20221126.fc38  local                                           409 k
 openblas                    i686    0.3.21-4.fc38        local                                            35 k
 openblas-openmp             i686    0.3.21-4.fc38        local                                           3.8 M
 perl-B                      i686    1.83-492.fc38        local                                           189 k
 perl-Carp                   noarch  1.52-489.fc37        local                                            29 k
 perl-Class-Struct           noarch  0.66-492.fc38        local                                            25 k
 perl-Data-Dumper            i686    2.184-490.fc37       local                                            58 k
 perl-DynaLoader             i686    1.52-492.fc38        local                                            29 k
 perl-Encode                 i686    4:3.19-492.fc38      local                                           1.2 M
 perl-Errno                  i686    1.36-492.fc38        local                                            18 k
 perl-Exporter               noarch  5.77-489.fc37        local                                            31 k
 perl-Fcntl                  i686    1.15-492.fc38        local                                            24 k
 perl-Fedora-VSP             noarch  0.001-30.fc38        local                                            23 k
 perl-File-Basename          noarch  2.85-492.fc38        local                                            20 k
 perl-File-Compare           noarch  1.100.700-492.fc38   local                                            16 k
 perl-File-Copy              noarch  2.39-492.fc38        local                                            23 k
 perl-File-Find              noarch  1.40-492.fc38        local                                            28 k
 perl-File-Path              noarch  2.18-489.fc37        local                                            35 k
 perl-File-Temp              noarch  1:0.231.100-489.fc37 local                                            59 k
 perl-File-stat              noarch  1.12-492.fc38        local                                            20 k
 perl-Getopt-Long            noarch  1:2.54-1.fc38        local                                            60 k
 perl-Getopt-Std             noarch  1.13-492.fc38        local                                            19 k
 perl-HTTP-Tiny              noarch  0.082-1.fc37         local                                            55 k
 perl-IO                     i686    1.50-492.fc38        local                                            91 k
 perl-IPC-Open3              noarch  1.22-492.fc38        local                                            26 k
 perl-MIME-Base64            i686    3.16-489.fc37        local                                            31 k
 perl-POSIX                  i686    2.03-492.fc38        local                                           104 k
 perl-PathTools              i686    3.84-489.fc37        local                                            85 k
 perl-Pod-Escapes            noarch  1:1.07-489.fc37      local                                            20 k
 perl-Pod-Perldoc            noarch  3.28.01-490.fc37     local                                            84 k
 perl-Pod-Simple             noarch  1:3.43-490.fc37      local                                           215 k
 perl-Pod-Usage              noarch  4:2.03-3.fc37        local                                            40 k
 perl-Scalar-List-Utils      i686    5:1.63-489.fc38      local                                            76 k
 perl-SelectSaver            noarch  1.02-492.fc38        local                                            15 k
 perl-Socket                 i686    4:2.036-1.fc38       local                                            56 k
 perl-Storable               i686    1:3.26-489.fc37      local                                            99 k
 perl-Symbol                 noarch  1.09-492.fc38        local                                            17 k
 perl-Term-ANSIColor         noarch  5.01-490.fc37        local                                            48 k
 perl-Term-Cap               noarch  1.17-489.fc37        local                                            22 k
 perl-Text-ParseWords        noarch  3.31-489.fc37        local                                            16 k
 perl-Text-Tabs+Wrap         noarch  2021.0814-489.fc37   local                                            22 k
 perl-Thread-Queue           noarch  3.14-489.fc37        local                                            21 k
 perl-Time-Local             noarch  2:1.300-489.fc37     local                                            33 k
 perl-constant               noarch  1.33-490.fc37        local                                            23 k
 perl-if                     noarch  0.61.000-492.fc38    local                                            17 k
 perl-interpreter            i686    4:5.36.0-492.fc38    local                                            75 k
 perl-libs                   i686    4:5.36.0-492.fc38    local                                           2.2 M
 perl-macros                 noarch  4:5.36.0-492.fc38    local                                            14 k
 perl-mro                    i686    1.26-492.fc38        local                                            32 k
 perl-overload               noarch  1.35-492.fc38        local                                            49 k
 perl-overloading            noarch  0.02-492.fc38        local                                            16 k
 perl-parent                 noarch  1:0.239-1.fc38       local                                            14 k
 perl-podlators              noarch  1:5.00-1.fc38        local                                           122 k
 perl-threads                i686    1:2.27-489.fc37      local                                            59 k
 perl-threads-shared         i686    1.64-489.fc37        local                                            45 k
 perl-vars                   noarch  1.05-492.fc38        local                                            16 k
 python-pip-wheel            noarch  22.3.1-1.fc38        local                                           1.4 M
 python-setuptools-wheel     noarch  65.5.1-1.fc38        local                                           715 k
 python3                     i686    3.11.1-1.fc38        local                                            27 k
 python3-libs                i686    3.11.1-1.fc38        local                                           9.3 M
 python3-numpy               i686    1:1.23.5-1.fc38      local                                           7.5 M

Transaction Summary
===============================================================================================================
Install  146 Packages

Total size: 153 M
Total download size: 50 M
Installed size: 628 M
Downloading Packages:
[SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded         
[SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.i686.rpm: Already downloaded     
[SKIPPED] cpp-13.0.0-0.4.fc38.i686.rpm: Already downloaded                     
[SKIPPED] gcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded                     
[SKIPPED] gcc-c++-13.0.0-0.4.fc38.i686.rpm: Already downloaded                 
[SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.i686.rpm: Already downloaded      
[SKIPPED] libasan-13.0.0-0.4.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libatomic-13.0.0-0.4.fc38.i686.rpm: Already downloaded               
[SKIPPED] libstdc++-devel-13.0.0-0.4.fc38.i686.rpm: Already downloaded         
[SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm: Already downloaded           
[SKIPPED] libubsan-13.0.0-0.4.fc38.i686.rpm: Already downloaded                
[SKIPPED] autoconf-2.71-4.fc38.noarch.rpm: Already downloaded                  
[SKIPPED] automake-1.16.5-9.fc37.noarch.rpm: Already downloaded                
[SKIPPED] boost-system-1.78.0-9.fc37.i686.rpm: Already downloaded              
[SKIPPED] boost-thread-1.78.0-9.fc37.i686.rpm: Already downloaded              
[SKIPPED] cmake-filesystem-3.25.1-1.fc38.i686.rpm: Already downloaded          
[SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded          
[SKIPPED] expat-2.5.0-1.fc38.i686.rpm: Already downloaded                      
[SKIPPED] gc-8.2.2-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] glibc-devel-2.36.9000-19.fc38.i686.rpm: Already downloaded           
[SKIPPED] glibc-headers-x86-2.36.9000-19.fc38.noarch.rpm: Already downloaded   
[SKIPPED] groff-base-1.22.4-10.fc37.i686.rpm: Already downloaded               
[SKIPPED] guile22-2.2.7-6.fc37.i686.rpm: Already downloaded                    
[SKIPPED] kernel-headers-6.1.0-1.fc38.i686.rpm: Already downloaded             
[SKIPPED] libb2-0.98.1-7.fc37.i686.rpm: Already downloaded                     
[SKIPPED] libicu-71.1-2.fc38.i686.rpm: Already downloaded                      
[SKIPPED] libicu-devel-71.1-2.fc38.i686.rpm: Already downloaded                
[SKIPPED] libmpc-1.2.1-5.fc37.i686.rpm: Already downloaded                     
[SKIPPED] libxcrypt-devel-4.4.33-5.fc38.i686.rpm: Already downloaded           
[SKIPPED] m4-1.4.19-4.fc37.i686.rpm: Already downloaded                        
[SKIPPED] make-4.3-11.fc37.i686.rpm: Already downloaded                        
[SKIPPED] mpdecimal-2.5.1-4.fc37.i686.rpm: Already downloaded                  
[SKIPPED] ncurses-6.3-5.20221126.fc38.i686.rpm: Already downloaded             
[SKIPPED] perl-B-1.83-492.fc38.i686.rpm: Already downloaded                    
[SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded               
[SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded       
[SKIPPED] perl-Data-Dumper-2.184-490.fc37.i686.rpm: Already downloaded         
[SKIPPED] perl-DynaLoader-1.52-492.fc38.i686.rpm: Already downloaded           
[SKIPPED] perl-Encode-3.19-492.fc38.i686.rpm: Already downloaded               
[SKIPPED] perl-Errno-1.36-492.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-Fcntl-1.15-492.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded      
[SKIPPED] perl-File-Compare-1.100.700-492.fc38.noarch.rpm: Already downloaded  
[SKIPPED] perl-File-Copy-2.39-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Find-1.40-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-Getopt-Long-2.54-1.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded         
[SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-IO-1.50-492.fc38.i686.rpm: Already downloaded                   
[SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-MIME-Base64-3.16-489.fc37.i686.rpm: Already downloaded          
[SKIPPED] perl-POSIX-2.03-492.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-PathTools-3.84-489.fc37.i686.rpm: Already downloaded            
[SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded         
[SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded            
[SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.i686.rpm: Already downloaded    
[SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded        
[SKIPPED] perl-Socket-2.036-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-Storable-3.26-489.fc37.i686.rpm: Already downloaded             
[SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded    
[SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Thread-Queue-3.14-489.fc37.noarch.rpm: Already downloaded       
[SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-interpreter-5.36.0-492.fc38.i686.rpm: Already downloaded        
[SKIPPED] perl-libs-5.36.0-492.fc38.i686.rpm: Already downloaded               
[SKIPPED] perl-mro-1.26-492.fc38.i686.rpm: Already downloaded                  
[SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded           
[SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded        
[SKIPPED] perl-parent-0.239-1.fc38.noarch.rpm: Already downloaded              
[SKIPPED] perl-podlators-5.00-1.fc38.noarch.rpm: Already downloaded            
[SKIPPED] perl-threads-2.27-489.fc37.i686.rpm: Already downloaded              
[SKIPPED] perl-threads-shared-1.64-489.fc37.i686.rpm: Already downloaded       
[SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded               
[SKIPPED] python-pip-wheel-22.3.1-1.fc38.noarch.rpm: Already downloaded        
[SKIPPED] python-setuptools-wheel-65.5.1-1.fc38.noarch.rpm: Already downloaded 
[SKIPPED] python3-3.11.1-1.fc38.i686.rpm: Already downloaded                   
[SKIPPED] python3-libs-3.11.1-1.fc38.i686.rpm: Already downloaded              
[SKIPPED] zlib-devel-1.2.13-1.fc38.i686.rpm: Already downloaded                
(90/146): libquadmath-13.0.0-0.4.fc38.i686.rpm  641 kB/s | 225 kB     00:00    
(91/146): libquadmath-devel-13.0.0-0.4.fc38.i68 1.7 MB/s |  20 kB     00:00    
(92/146): SuperLU-5.3.0-3.fc37.i686.rpm         5.3 MB/s | 198 kB     00:00    
(93/146): SuperLU-devel-5.3.0-3.fc37.i686.rpm   3.3 MB/s |  27 kB     00:00    
(94/146): armadillo-10.8.2-2.fc37.i686.rpm      3.1 MB/s |  41 kB     00:00    
(95/146): libgfortran-13.0.0-0.4.fc38.i686.rpm  1.9 MB/s | 825 kB     00:00    
(96/146): arpack-3.8.0-5.fc37.i686.rpm          3.0 MB/s | 118 kB     00:00    
(97/146): arpack-devel-3.8.0-5.fc37.i686.rpm    1.2 MB/s |  13 kB     00:00    
(98/146): boost-1.78.0-9.fc37.i686.rpm          1.9 MB/s |  14 kB     00:00    
(99/146): boost-atomic-1.78.0-9.fc37.i686.rpm   4.0 MB/s |  20 kB     00:00    
(100/146): boost-chrono-1.78.0-9.fc37.i686.rpm  5.6 MB/s |  28 kB     00:00    
(101/146): boost-container-1.78.0-9.fc37.i686.r 4.9 MB/s |  41 kB     00:00    
(102/146): armadillo-devel-10.8.2-2.fc37.i686.r  26 MB/s | 2.1 MB     00:00    
(103/146): boost-context-1.78.0-9.fc37.i686.rpm 3.7 MB/s |  17 kB     00:00    
(104/146): boost-coroutine-1.78.0-9.fc37.i686.r 3.0 MB/s |  23 kB     00:00    
(105/146): boost-contract-1.78.0-9.fc37.i686.rp 4.2 MB/s |  49 kB     00:00    
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  Verifying        : zlib-devel-1.2.13-1.fc38.i686                      146/146 

Installed:
  SuperLU-5.3.0-3.fc37.i686                                                     
  SuperLU-devel-5.3.0-3.fc37.i686                                               
  annobin-docs-10.99-1.0.1.fc38.noarch                                          
  annobin-plugin-gcc-10.99-1.0.1.fc38.i686                                      
  armadillo-10.8.2-2.fc37.i686                                                  
  armadillo-devel-10.8.2-2.fc37.i686                                            
  arpack-3.8.0-5.fc37.i686                                                      
  arpack-devel-3.8.0-5.fc37.i686                                                
  autoconf-2.71-4.fc38.noarch                                                   
  automake-1.16.5-9.fc37.noarch                                                 
  boost-1.78.0-9.fc37.i686                                                      
  boost-atomic-1.78.0-9.fc37.i686                                               
  boost-chrono-1.78.0-9.fc37.i686                                               
  boost-container-1.78.0-9.fc37.i686                                            
  boost-context-1.78.0-9.fc37.i686                                              
  boost-contract-1.78.0-9.fc37.i686                                             
  boost-coroutine-1.78.0-9.fc37.i686                                            
  boost-date-time-1.78.0-9.fc37.i686                                            
  boost-devel-1.78.0-9.fc37.i686                                                
  boost-fiber-1.78.0-9.fc37.i686                                                
  boost-filesystem-1.78.0-9.fc37.i686                                           
  boost-graph-1.78.0-9.fc37.i686                                                
  boost-iostreams-1.78.0-9.fc37.i686                                            
  boost-json-1.78.0-9.fc37.i686                                                 
  boost-locale-1.78.0-9.fc37.i686                                               
  boost-log-1.78.0-9.fc37.i686                                                  
  boost-math-1.78.0-9.fc37.i686                                                 
  boost-nowide-1.78.0-9.fc37.i686                                               
  boost-numpy3-1.78.0-9.fc37.i686                                               
  boost-program-options-1.78.0-9.fc37.i686                                      
  boost-python3-1.78.0-9.fc37.i686                                              
  boost-random-1.78.0-9.fc37.i686                                               
  boost-regex-1.78.0-9.fc37.i686                                                
  boost-serialization-1.78.0-9.fc37.i686                                        
  boost-stacktrace-1.78.0-9.fc37.i686                                           
  boost-system-1.78.0-9.fc37.i686                                               
  boost-test-1.78.0-9.fc37.i686                                                 
  boost-thread-1.78.0-9.fc37.i686                                               
  boost-timer-1.78.0-9.fc37.i686                                                
  boost-type_erasure-1.78.0-9.fc37.i686                                         
  boost-wave-1.78.0-9.fc37.i686                                                 
  cmake-filesystem-3.25.1-1.fc38.i686                                           
  cpp-13.0.0-0.4.fc38.i686                                                      
  emacs-filesystem-1:28.1-3.fc37.noarch                                         
  expat-2.5.0-1.fc38.i686                                                       
  flexiblas-3.2.1-3.fc38.i686                                                   
  flexiblas-devel-3.2.1-3.fc38.i686                                             
  flexiblas-netlib-3.2.1-3.fc38.i686                                            
  flexiblas-openblas-openmp-3.2.1-3.fc38.i686                                   
  gc-8.2.2-1.fc38.i686                                                          
  gcc-13.0.0-0.4.fc38.i686                                                      
  gcc-c++-13.0.0-0.4.fc38.i686                                                  
  gcc-gfortran-13.0.0-0.4.fc38.i686                                             
  gcc-plugin-annobin-13.0.0-0.4.fc38.i686                                       
  glibc-devel-2.36.9000-19.fc38.i686                                            
  glibc-headers-x86-2.36.9000-19.fc38.noarch                                    
  groff-base-1.22.4-10.fc37.i686                                                
  gsl-2.7.1-2.fc38.i686                                                         
  gsl-devel-2.7.1-2.fc38.i686                                                   
  guile22-2.2.7-6.fc37.i686                                                     
  hdf5-1.12.1-10.fc37.i686                                                      
  hdf5-devel-1.12.1-10.fc37.i686                                                
  htslib-1.15.1-1.fc38.i686                                                     
  htslib-devel-1.15.1-1.fc38.i686                                               
  kernel-headers-6.1.0-1.fc38.i686                                              
  libaec-1.0.6-3.fc37.i686                                                      
  libaec-devel-1.0.6-3.fc37.i686                                                
  libasan-13.0.0-0.4.fc38.i686                                                  
  libatomic-13.0.0-0.4.fc38.i686                                                
  libb2-0.98.1-7.fc37.i686                                                      
  libgfortran-13.0.0-0.4.fc38.i686                                              
  libicu-71.1-2.fc38.i686                                                       
  libicu-devel-71.1-2.fc38.i686                                                 
  libmpc-1.2.1-5.fc37.i686                                                      
  libquadmath-13.0.0-0.4.fc38.i686                                              
  libquadmath-devel-13.0.0-0.4.fc38.i686                                        
  libstdc++-devel-13.0.0-0.4.fc38.i686                                          
  libtool-ltdl-2.4.7-3.0.1.fc38.i686                                            
  libubsan-13.0.0-0.4.fc38.i686                                                 
  libxcrypt-devel-4.4.33-5.fc38.i686                                            
  m4-1.4.19-4.fc37.i686                                                         
  make-1:4.3-11.fc37.i686                                                       
  mpdecimal-2.5.1-4.fc37.i686                                                   
  ncurses-6.3-5.20221126.fc38.i686                                              
  openblas-0.3.21-4.fc38.i686                                                   
  openblas-openmp-0.3.21-4.fc38.i686                                            
  perl-B-1.83-492.fc38.i686                                                     
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-492.fc38.noarch                                        
  perl-Data-Dumper-2.184-490.fc37.i686                                          
  perl-DynaLoader-1.52-492.fc38.i686                                            
  perl-Encode-4:3.19-492.fc38.i686                                              
  perl-Errno-1.36-492.fc38.i686                                                 
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-Fcntl-1.15-492.fc38.i686                                                 
  perl-Fedora-VSP-0.001-30.fc38.noarch                                          
  perl-File-Basename-2.85-492.fc38.noarch                                       
  perl-File-Compare-1.100.700-492.fc38.noarch                                   
  perl-File-Copy-2.39-492.fc38.noarch                                           
  perl-File-Find-1.40-492.fc38.noarch                                           
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-492.fc38.noarch                                           
  perl-Getopt-Long-1:2.54-1.fc38.noarch                                         
  perl-Getopt-Std-1.13-492.fc38.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-492.fc38.i686                                                    
  perl-IPC-Open3-1.22-492.fc38.noarch                                           
  perl-MIME-Base64-3.16-489.fc37.i686                                           
  perl-POSIX-2.03-492.fc38.i686                                                 
  perl-PathTools-3.84-489.fc37.i686                                             
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.i686                                   
  perl-SelectSaver-1.02-492.fc38.noarch                                         
  perl-Socket-4:2.036-1.fc38.i686                                               
  perl-Storable-1:3.26-489.fc37.i686                                            
  perl-Symbol-1.09-492.fc38.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Thread-Queue-3.14-489.fc37.noarch                                        
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-constant-1.33-490.fc37.noarch                                            
  perl-generators-1.15-1.fc38.noarch                                            
  perl-if-0.61.000-492.fc38.noarch                                              
  perl-interpreter-4:5.36.0-492.fc38.i686                                       
  perl-libs-4:5.36.0-492.fc38.i686                                              
  perl-macros-4:5.36.0-492.fc38.noarch                                          
  perl-mro-1.26-492.fc38.i686                                                   
  perl-overload-1.35-492.fc38.noarch                                            
  perl-overloading-0.02-492.fc38.noarch                                         
  perl-parent-1:0.239-1.fc38.noarch                                             
  perl-podlators-1:5.00-1.fc38.noarch                                           
  perl-threads-1:2.27-489.fc37.i686                                             
  perl-threads-shared-1.64-489.fc37.i686                                        
  perl-vars-1.05-492.fc38.noarch                                                
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-1.fc38.i686                                                    
  python3-libs-3.11.1-1.fc38.i686                                               
  python3-numpy-1:1.23.5-1.fc38.i686                                            
  zlib-devel-1.2.13-1.fc38.i686                                                 

Complete!
Finish: build setup for mmseq-1.0.11-13.fc38.src.rpm
Start: rpmbuild mmseq-1.0.11-13.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1661212800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.39Xz26
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #2 (mmseq-zlib.patch):'
Patch #2 (mmseq-zlib.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.uLisCb
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function 'int main(int, char**)':
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable 'curoff' [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable 'gff_pos' [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro 'WRITE_UINT'
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro 'WRITE_UINT'
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:16: warning: unused variable 'nextStrLen' [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function 'int main(int, char**)':
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function 'void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)':
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)':
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)':
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)':
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function 'void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)':
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'int main(int, char**)':
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable 'isident' [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro 'WRITE_UINT'
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro 'WRITE_UINT'
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:16: warning: unused variable 'nextStrLen' [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)':
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::string)':
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function 'std::vector<double> meanvar(std::vector<double>, double, double)':
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function 'int main(int, char**)':
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable 'threadid' [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable 'buf16384' [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable 'doublehit' set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)':
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::string)':
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
bam2hits.cpp: In function 'void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)':
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function 'std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)':
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Alignment>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function 'int main(int, char**)':
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition '(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))' and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
extract_transcripts.cpp: In function 'int main(int, char**)':
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable 'line' [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function 'void convert(char*, std::string)':
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function 'int main(int, char**)':
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function 'void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)':
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable 'mcse_ind' set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable 'iact_ind' set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function 'void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)':
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)':
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)':
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function 'int main(int, char**)':
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const unsigned int'} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/cc6hCvbq.ltrans1.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jBwhEE
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-13.fc38 --unique-debug-suffix -1.0.11-13.fc38.i386 --unique-debug-src-base mmseq-1.0.11-13.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/bam2hits
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/extract_transcripts
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/hitstools
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/mmcollapse
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/mmdiff
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/mmseq
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/offsetGTF
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/bin/t2g_hits
original debug info size: 20928kB, size after compression: 16972kB
/usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
542 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.rGEJJI
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-13.fc38.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.LwIuOq
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/share/doc/mmseq
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/share/doc/mmseq
+ cp -pr README.md /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/share/doc/mmseq
+ cp -pr COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/share/doc/mmseq
+ cp -pr doc/ /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-13.fc38 mmseq(x86-32) = 1.0.11-13.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.78.0 libboost_regex.so.1.78.0 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libflexiblas.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libgsl.so.27 libgslcblas.so.0 libhts.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.9) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-13.fc38.i686
Provides: mmseq-debugsource = 1.0.11-13.fc38 mmseq-debugsource(x86-32) = 1.0.11-13.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-13.fc38.i686
Provides: debuginfo(build-id) = 2218ff4747dc7c4e7107e213231d7f4c771f44ce debuginfo(build-id) = 2fa70090907ede118d3bc6025cab75b4b3eea9b0 debuginfo(build-id) = 57ee7e08dca9ce7170308409a2f5599396bbcec7 debuginfo(build-id) = 7ac3ac243f70aa1696e7f43f16df6e9bba328865 debuginfo(build-id) = 7f7c18fd1dff5a33d5155ac0c8f777518735f62e debuginfo(build-id) = 8439cbe1a1dc008d2c08b58a34e128da64fd9348 debuginfo(build-id) = 960133e5c75a57890e12134a8d927c828bff7172 debuginfo(build-id) = b8d1a1fbe4bb549d0116d296630033820dfb32ec mmseq-debuginfo = 1.0.11-13.fc38 mmseq-debuginfo(x86-32) = 1.0.11-13.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-32) = 1.0.11-13.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386
Wrote: /builddir/build/RPMS/mmseq-1.0.11-13.fc38.i686.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-13.fc38.i686.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-13.fc38.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.T4IMxm
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-13.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.l08xsU
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-13.fc38.src.rpm
Finish: build phase for mmseq-1.0.11-13.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1672321733.292103/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-13.fc38.src.rpm) Config(child) 2 minutes 13 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool