Warning: Permanently added '162.133.132.138' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5175347 --chroot fedora-rawhide-s390x --detached
Version: 0.62
PID: 5077
Logging PID: 5078
Task:
{'appstream': False,
'background': True,
'build_id': 5175347,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-s390x',
'enable_net': False,
'fedora_review': False,
'git_hash': '23b9edce3f11f453b4f07217d09d53ed2003dab0',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/python-pysam',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'python-pysam',
'package_version': '0.19.1-3',
'project_dirname': 'gcc-13-test',
'project_name': 'gcc-13-test',
'project_owner': 'jakub',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-s390x/',
'id': 'copr_base',
'name': 'Copr repository'},
{'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
'sandbox': 'jakub/gcc-13-test--jakub',
'source_json': {},
'source_type': None,
'submitter': 'jakub',
'tags': [],
'task_id': '5175347-fedora-rawhide-s390x',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/python-pysam /var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/python-pysam', '/var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam'...
Running: git checkout 23b9edce3f11f453b4f07217d09d53ed2003dab0
cmd: ['git', 'checkout', '23b9edce3f11f453b4f07217d09d53ed2003dab0']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam
rc: 0
stdout:
stderr: Note: switching to '23b9edce3f11f453b4f07217d09d53ed2003dab0'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 23b9edc automatic import of python-pysam
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pysam-0.19.1.tar.gz
INFO: Calling: curl -H Pragma: -o pysam-0.19.1.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/python-pysam/pysam-0.19.1.tar.gz/md5/8e37b3f725259f08a33785317ccbc019/pysam-0.19.1.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 3767k 100 3767k 0 0 1948k 0 0:00:01 0:00:01 --:--:-- 1947k
INFO: Reading stdout from command: md5sum pysam-0.19.1.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam/python-pysam.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672095339.867032 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam/python-pysam.spec) Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1672095339.867032/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 34 MB/s | 32 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 50 kB/s | 86 kB 00:01
fedora 5.7 MB/s | 59 MB 00:10
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing:
dnf noarch 4.14.0-1.fc38 fedora 480 k
dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k
Installing dependencies:
alternatives s390x 1.21-1.fc38 copr_base 39 k
audit-libs s390x 3.0.9-2.fc38 fedora 114 k
basesystem noarch 11-14.fc37 fedora 7.0 k
bash s390x 5.2.9-3.fc38 copr_base 1.8 M
bzip2-libs s390x 1.0.8-12.fc38 copr_base 47 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils s390x 9.1-8.fc38 copr_base 1.1 M
coreutils-common s390x 9.1-8.fc38 copr_base 2.0 M
crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k
curl s390x 7.87.0-1.fc38 copr_base 345 k
cyrus-sasl-lib s390x 2.1.28-8.fc38 copr_base 773 k
dbus-libs s390x 1:1.14.4-1.fc38 copr_base 159 k
dnf-data noarch 4.14.0-1.fc38 fedora 43 k
elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k
elfutils-libelf s390x 0.188-3.fc38 copr_base 202 k
elfutils-libs s390x 0.188-3.fc38 copr_base 275 k
expat s390x 2.5.0-1.fc38 copr_base 114 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.6 fedora 11 k
fedora-release-common noarch 38-0.6 fedora 21 k
fedora-release-identity-basic noarch 38-0.6 fedora 11 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file-libs s390x 5.42-4.fc38 copr_base 683 k
filesystem s390x 3.18-2.fc37 fedora 1.1 M
findutils s390x 1:4.9.0-2.fc38 copr_base 489 k
gawk s390x 5.1.1-4.fc38 copr_base 1.0 M
gdbm-libs s390x 1:1.23-2.fc38 copr_base 59 k
glib2 s390x 2.74.1-2.fc38 copr_base 2.7 M
glibc s390x 2.36.9000-19.fc38 fedora 1.6 M
glibc-common s390x 2.36.9000-19.fc38 fedora 306 k
glibc-minimal-langpack s390x 2.36.9000-19.fc38 fedora 30 k
gmp s390x 1:6.2.1-3.fc38 copr_base 326 k
gnupg2 s390x 2.3.8-1.fc38 copr_base 2.6 M
gnutls s390x 3.7.8-9.fc38 copr_base 1.0 M
gpgme s390x 1.17.1-3.fc38 copr_base 219 k
grep s390x 3.8-1.fc38 copr_base 290 k
ima-evm-utils s390x 1.4-6.fc38 copr_base 63 k
json-c s390x 0.16-3.fc38 copr_base 43 k
keyutils-libs s390x 1.6.1-5.fc38 copr_base 32 k
krb5-libs s390x 1.20.1-3.fc38 copr_base 735 k
libacl s390x 2.3.1-4.fc38 copr_base 25 k
libarchive s390x 3.6.1-3.fc38 copr_base 426 k
libassuan s390x 2.5.5-5.fc38 copr_base 67 k
libattr s390x 2.5.1-5.fc38 copr_base 19 k
libb2 s390x 0.98.1-7.fc38 copr_base 27 k
libblkid s390x 2.38.1-3.fc38 fedora 103 k
libbrotli s390x 1.0.9-9.fc38 copr_base 344 k
libcap s390x 2.48-5.fc38 copr_base 68 k
libcap-ng s390x 0.8.3-4.fc38 copr_base 33 k
libcom_err s390x 1.46.5-3.fc38 copr_base 26 k
libcomps s390x 0.1.18-4.fc38 copr_base 81 k
libcurl s390x 7.87.0-1.fc38 copr_base 320 k
libdnf s390x 0.68.0-1.fc38 copr_base 653 k
libevent s390x 2.1.12-7.fc38 copr_base 260 k
libffi s390x 3.4.4-1.fc38 copr_base 36 k
libfsverity s390x 1.4-8.fc38 copr_base 20 k
libgcc s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 66 k
libgcrypt s390x 1.10.1-6.fc38 copr_base 495 k
libgomp s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 305 k
libgpg-error s390x 1.46-1.fc38 copr_base 225 k
libidn2 s390x 2.3.4-1.fc38 copr_base 155 k
libksba s390x 1.6.3-1.fc38 copr_base 163 k
libmodulemd s390x 2.14.0-4.fc38 copr_base 220 k
libmount s390x 2.38.1-3.fc38 fedora 132 k
libnghttp2 s390x 1.51.0-1.fc38 copr_base 78 k
libnsl2 s390x 2.0.0-4.fc38 copr_base 30 k
libpsl s390x 0.21.1-6.fc38 copr_base 66 k
librepo s390x 1.15.1-1.fc38 copr_base 96 k
libreport-filesystem noarch 2.17.6-1.fc38 copr_base 14 k
libselinux s390x 3.4-6.fc38 copr_base 91 k
libsemanage s390x 3.4-6.fc38 copr_base 122 k
libsepol s390x 3.4-4.fc38 copr_base 330 k
libsigsegv s390x 2.14-3.fc38 copr_base 27 k
libsmartcols s390x 2.38.1-3.fc38 fedora 63 k
libsolv s390x 0.7.22-3.fc38 copr_base 443 k
libssh s390x 0.10.4-2.fc38 copr_base 206 k
libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k
libstdc++ s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k
libtasn1 s390x 4.19.0-1.fc38 copr_base 78 k
libtirpc s390x 1.3.3-0.fc38 copr_base 97 k
libunistring s390x 1.0-2.fc38 copr_base 552 k
libuuid s390x 2.38.1-3.fc38 fedora 27 k
libverto s390x 0.3.2-4.fc38 copr_base 21 k
libxcrypt s390x 4.4.33-5.fc38 copr_base 125 k
libxml2 s390x 2.10.3-2.fc38 copr_base 714 k
libyaml s390x 0.2.5-8.fc38 copr_base 62 k
libzstd s390x 1.5.2-3.fc37 fedora 274 k
lua-libs s390x 5.4.4-6.fc38 copr_base 141 k
lz4-libs s390x 1.9.3-5.fc38 copr_base 88 k
mpdecimal s390x 2.5.1-4.fc38 copr_base 115 k
mpfr s390x 4.1.1-2.fc38 copr_base 553 k
ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k
ncurses-libs s390x 6.3-5.20221126.fc38 copr_base 357 k
nettle s390x 3.8-2.fc38 copr_base 444 k
npth s390x 1.6-10.fc38 copr_base 24 k
openldap s390x 2.6.3-1.fc38 copr_base 262 k
openssl-libs s390x 1:3.0.5-6.fc38 copr_base 1.8 M
p11-kit s390x 0.24.1-5.fc38 copr_base 370 k
p11-kit-trust s390x 0.24.1-5.fc38 copr_base 137 k
pcre2 s390x 10.40-1.fc38.1 copr_base 251 k
pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k
popt s390x 1.19-1.fc38 copr_base 63 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 s390x 3.11.1-1.fc38 fedora 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k
python3-dbus s390x 1.3.2-1.fc38 copr_base 147 k
python3-distro noarch 1.8.0-1.fc38 fedora 49 k
python3-dnf noarch 4.14.0-1.fc38 fedora 607 k
python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k
python3-gpg s390x 1.17.1-3.fc38 copr_base 281 k
python3-hawkey s390x 0.68.0-1.fc38 copr_base 105 k
python3-libcomps s390x 0.1.18-4.fc38 copr_base 50 k
python3-libdnf s390x 0.68.0-1.fc38 copr_base 796 k
python3-libs s390x 3.11.1-1.fc38 fedora 9.5 M
python3-rpm s390x 4.18.0-8.fc38 fedora 95 k
python3-six noarch 1.16.0-8.fc37 fedora 42 k
readline s390x 8.2-2.fc38 fedora 213 k
rpm s390x 4.18.0-8.fc38 fedora 569 k
rpm-build-libs s390x 4.18.0-8.fc38 fedora 92 k
rpm-libs s390x 4.18.0-8.fc38 fedora 307 k
rpm-sequoia s390x 1.2.0-1.fc38 fedora 960 k
rpm-sign-libs s390x 4.18.0-8.fc38 fedora 26 k
sed s390x 4.8-11.fc37 fedora 304 k
setup noarch 2.14.3-1.fc38 fedora 152 k
shadow-utils s390x 2:4.13-3.fc38 fedora 1.2 M
sqlite-libs s390x 3.40.0-1.fc38 fedora 651 k
systemd-libs s390x 252.4-598.fc38 fedora 591 k
tpm2-tss s390x 4.0.0-0.1.rc2.fc38 fedora 630 k
tzdata noarch 2022g-1.fc38 fedora 716 k
xz-libs s390x 5.2.9-1.fc38 fedora 93 k
zchunk-libs s390x 1.2.3-1.fc38 fedora 49 k
zlib s390x 1.2.13-1.fc38 fedora 96 k
Transaction Summary
=========================================================================================================================
Install 137 Packages
Total download size: 56 M
Installed size: 200 M
Downloading Packages:
(1/137): bzip2-libs-1.0.8-12.fc38.s390x.rpm 505 kB/s | 47 kB 00:00
(2/137): alternatives-1.21-1.fc38.s390x.rpm 398 kB/s | 39 kB 00:00
(3/137): coreutils-9.1-8.fc38.s390x.rpm 69 MB/s | 1.1 MB 00:00
(4/137): bash-5.2.9-3.fc38.s390x.rpm 16 MB/s | 1.8 MB 00:00
(5/137): coreutils-common-9.1-8.fc38.s390x.rpm 118 MB/s | 2.0 MB 00:00
(6/137): curl-7.87.0-1.fc38.s390x.rpm 39 MB/s | 345 kB 00:00
(7/137): cyrus-sasl-lib-2.1.28-8.fc38.s390x.rpm 88 MB/s | 773 kB 00:00
(8/137): dbus-libs-1.14.4-1.fc38.s390x.rpm 20 MB/s | 159 kB 00:00
(9/137): elfutils-default-yama-scope-0.188-3.fc 4.4 MB/s | 16 kB 00:00
(10/137): elfutils-libs-0.188-3.fc38.s390x.rpm 50 MB/s | 275 kB 00:00
(11/137): elfutils-libelf-0.188-3.fc38.s390x.rp 31 MB/s | 202 kB 00:00
(12/137): expat-2.5.0-1.fc38.s390x.rpm 18 MB/s | 114 kB 00:00
(13/137): findutils-4.9.0-2.fc38.s390x.rpm 73 MB/s | 489 kB 00:00
(14/137): gdbm-libs-1.23-2.fc38.s390x.rpm 15 MB/s | 59 kB 00:00
(15/137): file-libs-5.42-4.fc38.s390x.rpm 35 MB/s | 683 kB 00:00
(16/137): gawk-5.1.1-4.fc38.s390x.rpm 54 MB/s | 1.0 MB 00:00
(17/137): glib2-2.74.1-2.fc38.s390x.rpm 166 MB/s | 2.7 MB 00:00
(18/137): gmp-6.2.1-3.fc38.s390x.rpm 34 MB/s | 326 kB 00:00
(19/137): gpgme-1.17.1-3.fc38.s390x.rpm 32 MB/s | 219 kB 00:00
(20/137): grep-3.8-1.fc38.s390x.rpm 34 MB/s | 290 kB 00:00
(21/137): gnutls-3.7.8-9.fc38.s390x.rpm 56 MB/s | 1.0 MB 00:00
(22/137): ima-evm-utils-1.4-6.fc38.s390x.rpm 15 MB/s | 63 kB 00:00
(23/137): json-c-0.16-3.fc38.s390x.rpm 9.7 MB/s | 43 kB 00:00
(24/137): keyutils-libs-1.6.1-5.fc38.s390x.rpm 7.4 MB/s | 32 kB 00:00
(25/137): libacl-2.3.1-4.fc38.s390x.rpm 5.6 MB/s | 25 kB 00:00
(26/137): krb5-libs-1.20.1-3.fc38.s390x.rpm 97 MB/s | 735 kB 00:00
(27/137): gnupg2-2.3.8-1.fc38.s390x.rpm 64 MB/s | 2.6 MB 00:00
(28/137): libassuan-2.5.5-5.fc38.s390x.rpm 15 MB/s | 67 kB 00:00
(29/137): libattr-2.5.1-5.fc38.s390x.rpm 5.6 MB/s | 19 kB 00:00
(30/137): libarchive-3.6.1-3.fc38.s390x.rpm 46 MB/s | 426 kB 00:00
(31/137): libb2-0.98.1-7.fc38.s390x.rpm 7.3 MB/s | 27 kB 00:00
(32/137): libcap-2.48-5.fc38.s390x.rpm 16 MB/s | 68 kB 00:00
(33/137): libcap-ng-0.8.3-4.fc38.s390x.rpm 8.0 MB/s | 33 kB 00:00
(34/137): libbrotli-1.0.9-9.fc38.s390x.rpm 39 MB/s | 344 kB 00:00
(35/137): libcom_err-1.46.5-3.fc38.s390x.rpm 6.1 MB/s | 26 kB 00:00
(36/137): libcomps-0.1.18-4.fc38.s390x.rpm 16 MB/s | 81 kB 00:00
(37/137): libcurl-7.87.0-1.fc38.s390x.rpm 56 MB/s | 320 kB 00:00
(38/137): libffi-3.4.4-1.fc38.s390x.rpm 9.9 MB/s | 36 kB 00:00
(39/137): libevent-2.1.12-7.fc38.s390x.rpm 34 MB/s | 260 kB 00:00
(40/137): libdnf-0.68.0-1.fc38.s390x.rpm 56 MB/s | 653 kB 00:00
(41/137): libfsverity-1.4-8.fc38.s390x.rpm 5.1 MB/s | 20 kB 00:00
(42/137): libgpg-error-1.46-1.fc38.s390x.rpm 35 MB/s | 225 kB 00:00
(43/137): libgcrypt-1.10.1-6.fc38.s390x.rpm 50 MB/s | 495 kB 00:00
(44/137): libidn2-2.3.4-1.fc38.s390x.rpm 21 MB/s | 155 kB 00:00
(45/137): libksba-1.6.3-1.fc38.s390x.rpm 34 MB/s | 163 kB 00:00
(46/137): libmodulemd-2.14.0-4.fc38.s390x.rpm 41 MB/s | 220 kB 00:00
(47/137): libnghttp2-1.51.0-1.fc38.s390x.rpm 15 MB/s | 78 kB 00:00
(48/137): libnsl2-2.0.0-4.fc38.s390x.rpm 8.0 MB/s | 30 kB 00:00
(49/137): libpsl-0.21.1-6.fc38.s390x.rpm 15 MB/s | 66 kB 00:00
(50/137): librepo-1.15.1-1.fc38.s390x.rpm 21 MB/s | 96 kB 00:00
(51/137): libreport-filesystem-2.17.6-1.fc38.no 3.9 MB/s | 14 kB 00:00
(52/137): libselinux-3.4-6.fc38.s390x.rpm 21 MB/s | 91 kB 00:00
(53/137): libsemanage-3.4-6.fc38.s390x.rpm 26 MB/s | 122 kB 00:00
(54/137): libsepol-3.4-4.fc38.s390x.rpm 63 MB/s | 330 kB 00:00
(55/137): libsigsegv-2.14-3.fc38.s390x.rpm 6.9 MB/s | 27 kB 00:00
(56/137): libsolv-0.7.22-3.fc38.s390x.rpm 65 MB/s | 443 kB 00:00
(57/137): libssh-0.10.4-2.fc38.s390x.rpm 35 MB/s | 206 kB 00:00
(58/137): libssh-config-0.10.4-2.fc38.noarch.rp 1.7 MB/s | 9.2 kB 00:00
(59/137): libtasn1-4.19.0-1.fc38.s390x.rpm 19 MB/s | 78 kB 00:00
(60/137): libtirpc-1.3.3-0.fc38.s390x.rpm 22 MB/s | 97 kB 00:00
(61/137): libunistring-1.0-2.fc38.s390x.rpm 81 MB/s | 552 kB 00:00
(62/137): libverto-0.3.2-4.fc38.s390x.rpm 5.0 MB/s | 21 kB 00:00
(63/137): libxcrypt-4.4.33-5.fc38.s390x.rpm 27 MB/s | 125 kB 00:00
(64/137): libyaml-0.2.5-8.fc38.s390x.rpm 14 MB/s | 62 kB 00:00
(65/137): lua-libs-5.4.4-6.fc38.s390x.rpm 27 MB/s | 141 kB 00:00
(66/137): lz4-libs-1.9.3-5.fc38.s390x.rpm 20 MB/s | 88 kB 00:00
(67/137): libxml2-2.10.3-2.fc38.s390x.rpm 58 MB/s | 714 kB 00:00
(68/137): mpdecimal-2.5.1-4.fc38.s390x.rpm 21 MB/s | 115 kB 00:00
(69/137): ncurses-base-6.3-5.20221126.fc38.noar 14 MB/s | 62 kB 00:00
(70/137): mpfr-4.1.1-2.fc38.s390x.rpm 50 MB/s | 553 kB 00:00
(71/137): ncurses-libs-6.3-5.20221126.fc38.s390 40 MB/s | 357 kB 00:00
(72/137): npth-1.6-10.fc38.s390x.rpm 5.8 MB/s | 24 kB 00:00
(73/137): nettle-3.8-2.fc38.s390x.rpm 45 MB/s | 444 kB 00:00
(74/137): openldap-2.6.3-1.fc38.s390x.rpm 34 MB/s | 262 kB 00:00
(75/137): p11-kit-0.24.1-5.fc38.s390x.rpm 43 MB/s | 370 kB 00:00
(76/137): p11-kit-trust-0.24.1-5.fc38.s390x.rpm 21 MB/s | 137 kB 00:00
(77/137): pcre2-syntax-10.40-1.fc38.1.noarch.rp 32 MB/s | 143 kB 00:00
(78/137): pcre2-10.40-1.fc38.1.s390x.rpm 43 MB/s | 251 kB 00:00
(79/137): popt-1.19-1.fc38.s390x.rpm 17 MB/s | 63 kB 00:00
(80/137): python3-dbus-1.3.2-1.fc38.s390x.rpm 26 MB/s | 147 kB 00:00
(81/137): python3-hawkey-0.68.0-1.fc38.s390x.rp 19 MB/s | 105 kB 00:00
(82/137): python3-gpg-1.17.1-3.fc38.s390x.rpm 33 MB/s | 281 kB 00:00
(83/137): python3-libcomps-0.1.18-4.fc38.s390x. 11 MB/s | 50 kB 00:00
(84/137): openssl-libs-3.0.5-6.fc38.s390x.rpm 50 MB/s | 1.8 MB 00:00
(85/137): python3-libdnf-0.68.0-1.fc38.s390x.rp 79 MB/s | 796 kB 00:00
(86/137): libgcc-13.0.0-0.4.fc38.s390x.rpm 66 kB/s | 66 kB 00:00
(87/137): libgomp-13.0.0-0.4.fc38.s390x.rpm 229 kB/s | 305 kB 00:01
(88/137): basesystem-11-14.fc37.noarch.rpm 23 kB/s | 7.0 kB 00:00
(89/137): libstdc++-13.0.0-0.4.fc38.s390x.rpm 530 kB/s | 889 kB 00:01
(90/137): audit-libs-3.0.9-2.fc38.s390x.rpm 119 kB/s | 114 kB 00:00
(91/137): crypto-policies-20221215-1.gita4c31a3 121 kB/s | 90 kB 00:00
(92/137): dnf-4.14.0-1.fc38.noarch.rpm 906 kB/s | 480 kB 00:00
(93/137): ca-certificates-2022.2.54-5.fc37.noar 834 kB/s | 829 kB 00:00
(94/137): dnf-data-4.14.0-1.fc38.noarch.rpm 198 kB/s | 43 kB 00:00
(95/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 216 kB/s | 34 kB 00:00
(96/137): fedora-release-38-0.6.noarch.rpm 70 kB/s | 11 kB 00:00
(97/137): fedora-gpg-keys-38-0.3.noarch.rpm 749 kB/s | 125 kB 00:00
(98/137): fedora-release-common-38-0.6.noarch.r 117 kB/s | 21 kB 00:00
(99/137): fedora-release-identity-basic-38-0.6. 75 kB/s | 11 kB 00:00
(100/137): fedora-repos-38-0.3.noarch.rpm 67 kB/s | 10 kB 00:00
(101/137): fedora-repos-rawhide-38-0.3.noarch.r 59 kB/s | 9.7 kB 00:00
(102/137): glibc-2.36.9000-19.fc38.s390x.rpm 4.2 MB/s | 1.6 MB 00:00
(103/137): filesystem-3.18-2.fc37.s390x.rpm 2.7 MB/s | 1.1 MB 00:00
(104/137): glibc-common-2.36.9000-19.fc38.s390x 602 kB/s | 306 kB 00:00
(105/137): glibc-minimal-langpack-2.36.9000-19. 197 kB/s | 30 kB 00:00
(106/137): libblkid-2.38.1-3.fc38.s390x.rpm 645 kB/s | 103 kB 00:00
(107/137): libsmartcols-2.38.1-3.fc38.s390x.rpm 412 kB/s | 63 kB 00:00
(108/137): libuuid-2.38.1-3.fc38.s390x.rpm 176 kB/s | 27 kB 00:00
(109/137): libmount-2.38.1-3.fc38.s390x.rpm 677 kB/s | 132 kB 00:00
(110/137): libzstd-1.5.2-3.fc37.s390x.rpm 1.6 MB/s | 274 kB 00:00
(111/137): publicsuffix-list-dafsa-20221208-1.f 380 kB/s | 59 kB 00:00
(112/137): python3-3.11.1-1.fc38.s390x.rpm 178 kB/s | 27 kB 00:00
(113/137): python-setuptools-wheel-65.5.1-1.fc3 3.3 MB/s | 715 kB 00:00
(114/137): python3-dateutil-2.8.2-4.fc37.noarch 2.1 MB/s | 361 kB 00:00
(115/137): python3-distro-1.8.0-1.fc38.noarch.r 318 kB/s | 49 kB 00:00
(116/137): python-pip-wheel-22.3.1-1.fc38.noarc 2.8 MB/s | 1.4 MB 00:00
(117/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 3.2 MB/s | 607 kB 00:00
(118/137): python3-dnf-plugins-core-4.3.1-1.fc3 1.6 MB/s | 277 kB 00:00
(119/137): python3-rpm-4.18.0-8.fc38.s390x.rpm 612 kB/s | 95 kB 00:00
(120/137): python3-six-1.16.0-8.fc37.noarch.rpm 273 kB/s | 42 kB 00:00
(121/137): readline-8.2-2.fc38.s390x.rpm 1.3 MB/s | 213 kB 00:00
(122/137): rpm-4.18.0-8.fc38.s390x.rpm 2.8 MB/s | 569 kB 00:00
(123/137): rpm-build-libs-4.18.0-8.fc38.s390x.r 591 kB/s | 92 kB 00:00
(124/137): rpm-libs-4.18.0-8.fc38.s390x.rpm 1.7 MB/s | 307 kB 00:00
(125/137): python3-libs-3.11.1-1.fc38.s390x.rpm 13 MB/s | 9.5 MB 00:00
(126/137): rpm-sequoia-1.2.0-1.fc38.s390x.rpm 4.6 MB/s | 960 kB 00:00
(127/137): rpm-sign-libs-4.18.0-8.fc38.s390x.rp 172 kB/s | 26 kB 00:00
(128/137): sed-4.8-11.fc37.s390x.rpm 1.9 MB/s | 304 kB 00:00
(129/137): setup-2.14.3-1.fc38.noarch.rpm 953 kB/s | 152 kB 00:00
(130/137): sqlite-libs-3.40.0-1.fc38.s390x.rpm 3.9 MB/s | 651 kB 00:00
(131/137): shadow-utils-4.13-3.fc38.s390x.rpm 4.8 MB/s | 1.2 MB 00:00
(132/137): systemd-libs-252.4-598.fc38.s390x.rp 3.2 MB/s | 591 kB 00:00
(133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.s390x.rp 3.8 MB/s | 630 kB 00:00
(134/137): xz-libs-5.2.9-1.fc38.s390x.rpm 596 kB/s | 93 kB 00:00
(135/137): tzdata-2022g-1.fc38.noarch.rpm 3.5 MB/s | 716 kB 00:00
(136/137): zchunk-libs-1.2.3-1.fc38.s390x.rpm 318 kB/s | 49 kB 00:00
(137/137): zlib-1.2.13-1.fc38.s390x.rpm 615 kB/s | 96 kB 00:00
--------------------------------------------------------------------------------
Total 8.3 MB/s | 56 MB 00:06
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.s390x 1/1
Preparing : 1/1
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Running scriptlet: libgcc-13.0.0-0.4.fc38.s390x 1/137
Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137
Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137
Installing : tzdata-2022g-1.fc38.noarch 3/137
Installing : fedora-release-identity-basic-38-0.6.noarch 4/137
Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137
Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137
Installing : fedora-gpg-keys-38-0.3.noarch 7/137
Installing : fedora-release-38-0.6.noarch 8/137
Installing : fedora-release-common-38-0.6.noarch 9/137
Installing : fedora-repos-rawhide-38-0.3.noarch 10/137
Installing : fedora-repos-38-0.3.noarch 11/137
Installing : setup-2.14.3-1.fc38.noarch 12/137
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Installing : filesystem-3.18-2.fc37.s390x 13/137
Installing : basesystem-11-14.fc37.noarch 14/137
Installing : pcre2-syntax-10.40-1.fc38.1.noarch 15/137
Installing : ncurses-base-6.3-5.20221126.fc38.noarch 16/137
Installing : ncurses-libs-6.3-5.20221126.fc38.s390x 17/137
Running scriptlet: glibc-2.36.9000-19.fc38.s390x 18/137
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Installing : glibc-common-2.36.9000-19.fc38.s390x 20/137
Installing : glibc-minimal-langpack-2.36.9000-19.fc38.s390x 21/137
Installing : zlib-1.2.13-1.fc38.s390x 22/137
Installing : bzip2-libs-1.0.8-12.fc38.s390x 23/137
Installing : xz-libs-5.2.9-1.fc38.s390x 24/137
Installing : libzstd-1.5.2-3.fc37.s390x 25/137
Installing : sqlite-libs-3.40.0-1.fc38.s390x 26/137
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Installing : libgpg-error-1.46-1.fc38.s390x 29/137
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Installing : libxml2-2.10.3-2.fc38.s390x 31/137
Installing : lua-libs-5.4.4-6.fc38.s390x 32/137
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Installing : libuuid-2.38.1-3.fc38.s390x 34/137
Installing : elfutils-libelf-0.188-3.fc38.s390x 35/137
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warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew
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useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'
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Verifying : libdnf-0.68.0-1.fc38.s390x 38/137
Verifying : libevent-2.1.12-7.fc38.s390x 39/137
Verifying : libffi-3.4.4-1.fc38.s390x 40/137
Verifying : libfsverity-1.4-8.fc38.s390x 41/137
Verifying : libgcrypt-1.10.1-6.fc38.s390x 42/137
Verifying : libgpg-error-1.46-1.fc38.s390x 43/137
Verifying : libidn2-2.3.4-1.fc38.s390x 44/137
Verifying : libksba-1.6.3-1.fc38.s390x 45/137
Verifying : libmodulemd-2.14.0-4.fc38.s390x 46/137
Verifying : libnghttp2-1.51.0-1.fc38.s390x 47/137
Verifying : libnsl2-2.0.0-4.fc38.s390x 48/137
Verifying : libpsl-0.21.1-6.fc38.s390x 49/137
Verifying : librepo-1.15.1-1.fc38.s390x 50/137
Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 51/137
Verifying : libselinux-3.4-6.fc38.s390x 52/137
Verifying : libsemanage-3.4-6.fc38.s390x 53/137
Verifying : libsepol-3.4-4.fc38.s390x 54/137
Verifying : libsigsegv-2.14-3.fc38.s390x 55/137
Verifying : libsolv-0.7.22-3.fc38.s390x 56/137
Verifying : libssh-0.10.4-2.fc38.s390x 57/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 58/137
Verifying : libtasn1-4.19.0-1.fc38.s390x 59/137
Verifying : libtirpc-1.3.3-0.fc38.s390x 60/137
Verifying : libunistring-1.0-2.fc38.s390x 61/137
Verifying : libverto-0.3.2-4.fc38.s390x 62/137
Verifying : libxcrypt-4.4.33-5.fc38.s390x 63/137
Verifying : libxml2-2.10.3-2.fc38.s390x 64/137
Verifying : libyaml-0.2.5-8.fc38.s390x 65/137
Verifying : lua-libs-5.4.4-6.fc38.s390x 66/137
Verifying : lz4-libs-1.9.3-5.fc38.s390x 67/137
Verifying : mpdecimal-2.5.1-4.fc38.s390x 68/137
Verifying : mpfr-4.1.1-2.fc38.s390x 69/137
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 70/137
Verifying : ncurses-libs-6.3-5.20221126.fc38.s390x 71/137
Verifying : nettle-3.8-2.fc38.s390x 72/137
Verifying : npth-1.6-10.fc38.s390x 73/137
Verifying : openldap-2.6.3-1.fc38.s390x 74/137
Verifying : openssl-libs-1:3.0.5-6.fc38.s390x 75/137
Verifying : p11-kit-0.24.1-5.fc38.s390x 76/137
Verifying : p11-kit-trust-0.24.1-5.fc38.s390x 77/137
Verifying : pcre2-10.40-1.fc38.1.s390x 78/137
Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 79/137
Verifying : popt-1.19-1.fc38.s390x 80/137
Verifying : python3-dbus-1.3.2-1.fc38.s390x 81/137
Verifying : python3-gpg-1.17.1-3.fc38.s390x 82/137
Verifying : python3-hawkey-0.68.0-1.fc38.s390x 83/137
Verifying : python3-libcomps-0.1.18-4.fc38.s390x 84/137
Verifying : python3-libdnf-0.68.0-1.fc38.s390x 85/137
Verifying : libgcc-13.0.0-0.4.fc38.s390x 86/137
Verifying : libgomp-13.0.0-0.4.fc38.s390x 87/137
Verifying : libstdc++-13.0.0-0.4.fc38.s390x 88/137
Verifying : audit-libs-3.0.9-2.fc38.s390x 89/137
Verifying : basesystem-11-14.fc37.noarch 90/137
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 91/137
Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 92/137
Verifying : dnf-4.14.0-1.fc38.noarch 93/137
Verifying : dnf-data-4.14.0-1.fc38.noarch 94/137
Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 95/137
Verifying : fedora-gpg-keys-38-0.3.noarch 96/137
Verifying : fedora-release-38-0.6.noarch 97/137
Verifying : fedora-release-common-38-0.6.noarch 98/137
Verifying : fedora-release-identity-basic-38-0.6.noarch 99/137
Verifying : fedora-repos-38-0.3.noarch 100/137
Verifying : fedora-repos-rawhide-38-0.3.noarch 101/137
Verifying : filesystem-3.18-2.fc37.s390x 102/137
Verifying : glibc-2.36.9000-19.fc38.s390x 103/137
Verifying : glibc-common-2.36.9000-19.fc38.s390x 104/137
Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.s390x 105/137
Verifying : libblkid-2.38.1-3.fc38.s390x 106/137
Verifying : libmount-2.38.1-3.fc38.s390x 107/137
Verifying : libsmartcols-2.38.1-3.fc38.s390x 108/137
Verifying : libuuid-2.38.1-3.fc38.s390x 109/137
Verifying : libzstd-1.5.2-3.fc37.s390x 110/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 111/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 112/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 113/137
Verifying : python3-3.11.1-1.fc38.s390x 114/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 115/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 116/137
Verifying : python3-dnf-4.14.0-1.fc38.noarch 117/137
Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 118/137
Verifying : python3-libs-3.11.1-1.fc38.s390x 119/137
Verifying : python3-rpm-4.18.0-8.fc38.s390x 120/137
Verifying : python3-six-1.16.0-8.fc37.noarch 121/137
Verifying : readline-8.2-2.fc38.s390x 122/137
Verifying : rpm-4.18.0-8.fc38.s390x 123/137
Verifying : rpm-build-libs-4.18.0-8.fc38.s390x 124/137
Verifying : rpm-libs-4.18.0-8.fc38.s390x 125/137
Verifying : rpm-sequoia-1.2.0-1.fc38.s390x 126/137
Verifying : rpm-sign-libs-4.18.0-8.fc38.s390x 127/137
Verifying : sed-4.8-11.fc37.s390x 128/137
Verifying : setup-2.14.3-1.fc38.noarch 129/137
Verifying : shadow-utils-2:4.13-3.fc38.s390x 130/137
Verifying : sqlite-libs-3.40.0-1.fc38.s390x 131/137
Verifying : systemd-libs-252.4-598.fc38.s390x 132/137
Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.s390x 133/137
Verifying : tzdata-2022g-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.s390x 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.s390x 136/137
Verifying : zlib-1.2.13-1.fc38.s390x 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.s390x
audit-libs-3.0.9-2.fc38.s390x
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.s390x
bzip2-libs-1.0.8-12.fc38.s390x
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.s390x
coreutils-common-9.1-8.fc38.s390x
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.s390x
cyrus-sasl-lib-2.1.28-8.fc38.s390x
dbus-libs-1:1.14.4-1.fc38.s390x
dnf-4.14.0-1.fc38.noarch
dnf-data-4.14.0-1.fc38.noarch
dnf-plugins-core-4.3.1-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.s390x
elfutils-libs-0.188-3.fc38.s390x
expat-2.5.0-1.fc38.s390x
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc38.s390x
filesystem-3.18-2.fc37.s390x
findutils-1:4.9.0-2.fc38.s390x
gawk-5.1.1-4.fc38.s390x
gdbm-libs-1:1.23-2.fc38.s390x
glib2-2.74.1-2.fc38.s390x
glibc-2.36.9000-19.fc38.s390x
glibc-common-2.36.9000-19.fc38.s390x
glibc-minimal-langpack-2.36.9000-19.fc38.s390x
gmp-1:6.2.1-3.fc38.s390x
gnupg2-2.3.8-1.fc38.s390x
gnutls-3.7.8-9.fc38.s390x
gpgme-1.17.1-3.fc38.s390x
grep-3.8-1.fc38.s390x
ima-evm-utils-1.4-6.fc38.s390x
json-c-0.16-3.fc38.s390x
keyutils-libs-1.6.1-5.fc38.s390x
krb5-libs-1.20.1-3.fc38.s390x
libacl-2.3.1-4.fc38.s390x
libarchive-3.6.1-3.fc38.s390x
libassuan-2.5.5-5.fc38.s390x
libattr-2.5.1-5.fc38.s390x
libb2-0.98.1-7.fc38.s390x
libblkid-2.38.1-3.fc38.s390x
libbrotli-1.0.9-9.fc38.s390x
libcap-2.48-5.fc38.s390x
libcap-ng-0.8.3-4.fc38.s390x
libcom_err-1.46.5-3.fc38.s390x
libcomps-0.1.18-4.fc38.s390x
libcurl-7.87.0-1.fc38.s390x
libdnf-0.68.0-1.fc38.s390x
libevent-2.1.12-7.fc38.s390x
libffi-3.4.4-1.fc38.s390x
libfsverity-1.4-8.fc38.s390x
libgcc-13.0.0-0.4.fc38.s390x
libgcrypt-1.10.1-6.fc38.s390x
libgomp-13.0.0-0.4.fc38.s390x
libgpg-error-1.46-1.fc38.s390x
libidn2-2.3.4-1.fc38.s390x
libksba-1.6.3-1.fc38.s390x
libmodulemd-2.14.0-4.fc38.s390x
libmount-2.38.1-3.fc38.s390x
libnghttp2-1.51.0-1.fc38.s390x
libnsl2-2.0.0-4.fc38.s390x
libpsl-0.21.1-6.fc38.s390x
librepo-1.15.1-1.fc38.s390x
libreport-filesystem-2.17.6-1.fc38.noarch
libselinux-3.4-6.fc38.s390x
libsemanage-3.4-6.fc38.s390x
libsepol-3.4-4.fc38.s390x
libsigsegv-2.14-3.fc38.s390x
libsmartcols-2.38.1-3.fc38.s390x
libsolv-0.7.22-3.fc38.s390x
libssh-0.10.4-2.fc38.s390x
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.s390x
libtasn1-4.19.0-1.fc38.s390x
libtirpc-1.3.3-0.fc38.s390x
libunistring-1.0-2.fc38.s390x
libuuid-2.38.1-3.fc38.s390x
libverto-0.3.2-4.fc38.s390x
libxcrypt-4.4.33-5.fc38.s390x
libxml2-2.10.3-2.fc38.s390x
libyaml-0.2.5-8.fc38.s390x
libzstd-1.5.2-3.fc37.s390x
lua-libs-5.4.4-6.fc38.s390x
lz4-libs-1.9.3-5.fc38.s390x
mpdecimal-2.5.1-4.fc38.s390x
mpfr-4.1.1-2.fc38.s390x
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.s390x
nettle-3.8-2.fc38.s390x
npth-1.6-10.fc38.s390x
openldap-2.6.3-1.fc38.s390x
openssl-libs-1:3.0.5-6.fc38.s390x
p11-kit-0.24.1-5.fc38.s390x
p11-kit-trust-0.24.1-5.fc38.s390x
pcre2-10.40-1.fc38.1.s390x
pcre2-syntax-10.40-1.fc38.1.noarch
popt-1.19-1.fc38.s390x
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.s390x
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-1.fc38.s390x
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-1.fc38.noarch
python3-dnf-plugins-core-4.3.1-1.fc38.noarch
python3-gpg-1.17.1-3.fc38.s390x
python3-hawkey-0.68.0-1.fc38.s390x
python3-libcomps-0.1.18-4.fc38.s390x
python3-libdnf-0.68.0-1.fc38.s390x
python3-libs-3.11.1-1.fc38.s390x
python3-rpm-4.18.0-8.fc38.s390x
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.s390x
rpm-4.18.0-8.fc38.s390x
rpm-build-libs-4.18.0-8.fc38.s390x
rpm-libs-4.18.0-8.fc38.s390x
rpm-sequoia-1.2.0-1.fc38.s390x
rpm-sign-libs-4.18.0-8.fc38.s390x
sed-4.8-11.fc37.s390x
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.s390x
sqlite-libs-3.40.0-1.fc38.s390x
systemd-libs-252.4-598.fc38.s390x
tpm2-tss-4.0.0-0.1.rc2.fc38.s390x
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.s390x
zchunk-libs-1.2.3-1.fc38.s390x
zlib-1.2.13-1.fc38.s390x
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 5.5 MB/s | 32 MB 00:05
Additional repo https_jakub_fedorapeople_org_fe 29 kB/s | 86 kB 00:02
fedora 11 MB/s | 59 MB 00:05
Last metadata expiration check: 0:00:01 ago on Mon Dec 26 22:57:09 2022.
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing group/module packages:
bash s390x 5.2.9-3.fc38 copr_base 1.8 M
bzip2 s390x 1.0.8-12.fc38 copr_base 54 k
coreutils s390x 9.1-8.fc38 copr_base 1.1 M
cpio s390x 2.13-13.fc38 copr_base 275 k
diffutils s390x 3.8-3.fc38 copr_base 381 k
fedora-release-common noarch 38-0.6 fedora 21 k
findutils s390x 1:4.9.0-2.fc38 copr_base 489 k
gawk s390x 5.1.1-4.fc38 copr_base 1.0 M
glibc-minimal-langpack s390x 2.36.9000-19.fc38 fedora 30 k
grep s390x 3.8-1.fc38 copr_base 290 k
gzip s390x 1.12-2.fc38 copr_base 165 k
info s390x 7.0.1-1.fc38 fedora 180 k
patch s390x 2.7.6-17.fc38 copr_base 134 k
redhat-rpm-config noarch 235-1.fc38 fedora 80 k
rpm-build s390x 4.18.0-8.fc38 fedora 76 k
sed s390x 4.8-11.fc37 fedora 304 k
shadow-utils s390x 2:4.13-3.fc38 fedora 1.2 M
tar s390x 2:1.34-5.fc38 fedora 876 k
unzip s390x 6.0-58.fc38 fedora 177 k
util-linux s390x 2.38.1-3.fc38 fedora 2.3 M
which s390x 2.21-36.fc38 fedora 42 k
xz s390x 5.2.9-1.fc38 fedora 306 k
Installing dependencies:
alternatives s390x 1.21-1.fc38 copr_base 39 k
ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k
audit-libs s390x 3.0.9-2.fc38 fedora 114 k
authselect s390x 1.4.2-1.fc38 copr_base 139 k
authselect-libs s390x 1.4.2-1.fc38 copr_base 235 k
basesystem noarch 11-14.fc37 fedora 7.0 k
binutils s390x 2.39-6.fc38 copr_base 5.7 M
binutils-gold s390x 2.39-6.fc38 copr_base 994 k
bzip2-libs s390x 1.0.8-12.fc38 copr_base 47 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils-common s390x 9.1-8.fc38 copr_base 2.0 M
cracklib s390x 2.9.7-30.fc38 copr_base 82 k
crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k
curl s390x 7.87.0-1.fc38 copr_base 345 k
cyrus-sasl-lib s390x 2.1.28-8.fc38 copr_base 773 k
debugedit s390x 5.0-5.fc37 fedora 76 k
dwz s390x 0.15-1.fc38 copr_base 144 k
ed s390x 1.18-2.fc38 copr_base 80 k
efi-srpm-macros noarch 5-6.fc37 fedora 22 k
elfutils s390x 0.188-3.fc38 copr_base 547 k
elfutils-debuginfod-client s390x 0.188-3.fc38 copr_base 41 k
elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k
elfutils-libelf s390x 0.188-3.fc38 copr_base 202 k
elfutils-libs s390x 0.188-3.fc38 copr_base 275 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.6 fedora 11 k
fedora-release-identity-basic noarch 38-0.6 fedora 11 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file s390x 5.42-4.fc38 copr_base 49 k
file-libs s390x 5.42-4.fc38 copr_base 683 k
filesystem s390x 3.18-2.fc37 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k
fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k
gdb-minimal s390x 12.1-10.fc38 fedora 3.3 M
gdbm-libs s390x 1:1.23-2.fc38 copr_base 59 k
ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k
glibc s390x 2.36.9000-19.fc38 fedora 1.6 M
glibc-common s390x 2.36.9000-19.fc38 fedora 306 k
glibc-gconv-extra s390x 2.36.9000-19.fc38 fedora 1.6 M
gmp s390x 1:6.2.1-3.fc38 copr_base 326 k
gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k
go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k
jansson s390x 2.13.1-5.fc38 copr_base 45 k
kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k
keyutils-libs s390x 1.6.1-5.fc38 copr_base 32 k
krb5-libs s390x 1.20.1-3.fc38 copr_base 735 k
libacl s390x 2.3.1-4.fc38 copr_base 25 k
libarchive s390x 3.6.1-3.fc38 copr_base 426 k
libattr s390x 2.5.1-5.fc38 copr_base 19 k
libblkid s390x 2.38.1-3.fc38 fedora 103 k
libbrotli s390x 1.0.9-9.fc38 copr_base 344 k
libcap s390x 2.48-5.fc38 copr_base 68 k
libcap-ng s390x 0.8.3-4.fc38 copr_base 33 k
libcom_err s390x 1.46.5-3.fc38 copr_base 26 k
libcurl s390x 7.87.0-1.fc38 copr_base 320 k
libdb s390x 5.3.28-54.fc38 copr_base 775 k
libeconf s390x 0.4.0-4.fc38 copr_base 29 k
libevent s390x 2.1.12-7.fc38 copr_base 260 k
libfdisk s390x 2.38.1-3.fc38 fedora 156 k
libffi s390x 3.4.4-1.fc38 copr_base 36 k
libgcc s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 66 k
libgomp s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 305 k
libidn2 s390x 2.3.4-1.fc38 copr_base 155 k
libmount s390x 2.38.1-3.fc38 fedora 132 k
libnghttp2 s390x 1.51.0-1.fc38 copr_base 78 k
libnsl2 s390x 2.0.0-4.fc38 copr_base 30 k
libpkgconf s390x 1.8.0-3.fc38 copr_base 37 k
libpsl s390x 0.21.1-6.fc38 copr_base 66 k
libpwquality s390x 1.4.5-1.fc38 fedora 119 k
libselinux s390x 3.4-6.fc38 copr_base 91 k
libsemanage s390x 3.4-6.fc38 copr_base 122 k
libsepol s390x 3.4-4.fc38 copr_base 330 k
libsigsegv s390x 2.14-3.fc38 copr_base 27 k
libsmartcols s390x 2.38.1-3.fc38 fedora 63 k
libssh s390x 0.10.4-2.fc38 copr_base 206 k
libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k
libstdc++ s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k
libtasn1 s390x 4.19.0-1.fc38 copr_base 78 k
libtirpc s390x 1.3.3-0.fc38 copr_base 97 k
libunistring s390x 1.0-2.fc38 copr_base 552 k
libutempter s390x 1.2.1-7.fc38 copr_base 26 k
libuuid s390x 2.38.1-3.fc38 fedora 27 k
libverto s390x 0.3.2-4.fc38 copr_base 21 k
libxcrypt s390x 4.4.33-5.fc38 copr_base 125 k
libxml2 s390x 2.10.3-2.fc38 copr_base 714 k
libzstd s390x 1.5.2-3.fc37 fedora 274 k
lua-libs s390x 5.4.4-6.fc38 copr_base 141 k
lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k
lz4-libs s390x 1.9.3-5.fc38 copr_base 88 k
mpfr s390x 4.1.1-2.fc38 copr_base 553 k
ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k
ncurses-libs s390x 6.3-5.20221126.fc38 copr_base 357 k
nettle s390x 3.8-2.fc38 copr_base 444 k
nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k
openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k
openldap s390x 2.6.3-1.fc38 copr_base 262 k
openssl-libs s390x 1:3.0.5-6.fc38 copr_base 1.8 M
p11-kit s390x 0.24.1-5.fc38 copr_base 370 k
p11-kit-trust s390x 0.24.1-5.fc38 copr_base 137 k
package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k
pam s390x 1.5.2-15.fc38 copr_base 528 k
pam-libs s390x 1.5.2-15.fc38 copr_base 59 k
pcre2 s390x 10.40-1.fc38.1 copr_base 251 k
pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k
perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k
pkgconf s390x 1.8.0-3.fc38 copr_base 42 k
pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k
pkgconf-pkg-config s390x 1.8.0-3.fc38 copr_base 11 k
popt s390x 1.19-1.fc38 copr_base 63 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-srpm-macros noarch 3.11-6.fc38 fedora 25 k
qt5-srpm-macros noarch 5.15.7-1.fc38 fedora 7.9 k
readline s390x 8.2-2.fc38 fedora 213 k
rpm s390x 4.18.0-8.fc38 fedora 569 k
rpm-build-libs s390x 4.18.0-8.fc38 fedora 92 k
rpm-libs s390x 4.18.0-8.fc38 fedora 307 k
rpm-sequoia s390x 1.2.0-1.fc38 fedora 960 k
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 fedora 8.8 k
rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k
setup noarch 2.14.3-1.fc38 fedora 152 k
sqlite-libs s390x 3.40.0-1.fc38 fedora 651 k
systemd-libs s390x 252.4-598.fc38 fedora 591 k
tzdata noarch 2022g-1.fc38 fedora 716 k
util-linux-core s390x 2.38.1-3.fc38 fedora 462 k
xxhash-libs s390x 0.8.1-3.fc37 fedora 36 k
xz-libs s390x 5.2.9-1.fc38 fedora 93 k
zip s390x 3.0-35.fc38 fedora 261 k
zlib s390x 1.2.13-1.fc38 fedora 96 k
zstd s390x 1.5.2-3.fc37 fedora 410 k
Installing Groups:
Buildsystem building group
Transaction Summary
=========================================================================================================================
Install 153 Packages
Total download size: 52 M
Installed size: 182 M
Downloading Packages:
(1/153): alternatives-1.21-1.fc38.s390x.rpm 160 kB/s | 39 kB 00:00
(2/153): authselect-1.4.2-1.fc38.s390x.rpm 562 kB/s | 139 kB 00:00
(3/153): authselect-libs-1.4.2-1.fc38.s390x.rpm 930 kB/s | 235 kB 00:00
(4/153): binutils-gold-2.39-6.fc38.s390x.rpm 78 MB/s | 994 kB 00:00
(5/153): bash-5.2.9-3.fc38.s390x.rpm 60 MB/s | 1.8 MB 00:00
(6/153): bzip2-1.0.8-12.fc38.s390x.rpm 5.5 MB/s | 54 kB 00:00
(7/153): binutils-2.39-6.fc38.s390x.rpm 163 MB/s | 5.7 MB 00:00
(8/153): bzip2-libs-1.0.8-12.fc38.s390x.rpm 5.1 MB/s | 47 kB 00:00
(9/153): cpio-2.13-13.fc38.s390x.rpm 25 MB/s | 275 kB 00:00
(10/153): coreutils-9.1-8.fc38.s390x.rpm 53 MB/s | 1.1 MB 00:00
(11/153): cracklib-2.9.7-30.fc38.s390x.rpm 19 MB/s | 82 kB 00:00
(12/153): curl-7.87.0-1.fc38.s390x.rpm 41 MB/s | 345 kB 00:00
(13/153): diffutils-3.8-3.fc38.s390x.rpm 61 MB/s | 381 kB 00:00
(14/153): coreutils-common-9.1-8.fc38.s390x.rpm 67 MB/s | 2.0 MB 00:00
(15/153): cyrus-sasl-lib-2.1.28-8.fc38.s390x.rp 52 MB/s | 773 kB 00:00
(16/153): dwz-0.15-1.fc38.s390x.rpm 31 MB/s | 144 kB 00:00
(17/153): ed-1.18-2.fc38.s390x.rpm 17 MB/s | 80 kB 00:00
(18/153): elfutils-0.188-3.fc38.s390x.rpm 83 MB/s | 547 kB 00:00
(19/153): elfutils-debuginfod-client-0.188-3.fc 8.0 MB/s | 41 kB 00:00
(20/153): elfutils-default-yama-scope-0.188-3.f 4.9 MB/s | 16 kB 00:00
(21/153): file-5.42-4.fc38.s390x.rpm 13 MB/s | 49 kB 00:00
(22/153): elfutils-libelf-0.188-3.fc38.s390x.rp 34 MB/s | 202 kB 00:00
(23/153): elfutils-libs-0.188-3.fc38.s390x.rpm 37 MB/s | 275 kB 00:00
(24/153): findutils-4.9.0-2.fc38.s390x.rpm 48 MB/s | 489 kB 00:00
(25/153): file-libs-5.42-4.fc38.s390x.rpm 54 MB/s | 683 kB 00:00
(26/153): gdbm-libs-1.23-2.fc38.s390x.rpm 14 MB/s | 59 kB 00:00
(27/153): gmp-6.2.1-3.fc38.s390x.rpm 41 MB/s | 326 kB 00:00
(28/153): gawk-5.1.1-4.fc38.s390x.rpm 50 MB/s | 1.0 MB 00:00
(29/153): grep-3.8-1.fc38.s390x.rpm 33 MB/s | 290 kB 00:00
(30/153): gzip-1.12-2.fc38.s390x.rpm 23 MB/s | 165 kB 00:00
(31/153): jansson-2.13.1-5.fc38.s390x.rpm 11 MB/s | 45 kB 00:00
(32/153): keyutils-libs-1.6.1-5.fc38.s390x.rpm 7.9 MB/s | 32 kB 00:00
(33/153): libacl-2.3.1-4.fc38.s390x.rpm 7.6 MB/s | 25 kB 00:00
(34/153): libattr-2.5.1-5.fc38.s390x.rpm 4.6 MB/s | 19 kB 00:00
(35/153): libarchive-3.6.1-3.fc38.s390x.rpm 46 MB/s | 426 kB 00:00
(36/153): krb5-libs-1.20.1-3.fc38.s390x.rpm 57 MB/s | 735 kB 00:00
(37/153): libcap-2.48-5.fc38.s390x.rpm 15 MB/s | 68 kB 00:00
(38/153): libbrotli-1.0.9-9.fc38.s390x.rpm 42 MB/s | 344 kB 00:00
(39/153): libcap-ng-0.8.3-4.fc38.s390x.rpm 9.1 MB/s | 33 kB 00:00
(40/153): libcom_err-1.46.5-3.fc38.s390x.rpm 7.7 MB/s | 26 kB 00:00
(41/153): libeconf-0.4.0-4.fc38.s390x.rpm 6.9 MB/s | 29 kB 00:00
(42/153): libcurl-7.87.0-1.fc38.s390x.rpm 38 MB/s | 320 kB 00:00
(43/153): libdb-5.3.28-54.fc38.s390x.rpm 89 MB/s | 775 kB 00:00
(44/153): libffi-3.4.4-1.fc38.s390x.rpm 11 MB/s | 36 kB 00:00
(45/153): libevent-2.1.12-7.fc38.s390x.rpm 41 MB/s | 260 kB 00:00
(46/153): libidn2-2.3.4-1.fc38.s390x.rpm 31 MB/s | 155 kB 00:00
(47/153): libnghttp2-1.51.0-1.fc38.s390x.rpm 18 MB/s | 78 kB 00:00
(48/153): libnsl2-2.0.0-4.fc38.s390x.rpm 9.0 MB/s | 30 kB 00:00
(49/153): libpkgconf-1.8.0-3.fc38.s390x.rpm 11 MB/s | 37 kB 00:00
(50/153): libpsl-0.21.1-6.fc38.s390x.rpm 15 MB/s | 66 kB 00:00
(51/153): libselinux-3.4-6.fc38.s390x.rpm 19 MB/s | 91 kB 00:00
(52/153): libsemanage-3.4-6.fc38.s390x.rpm 26 MB/s | 122 kB 00:00
(53/153): libsigsegv-2.14-3.fc38.s390x.rpm 8.9 MB/s | 27 kB 00:00
(54/153): libssh-0.10.4-2.fc38.s390x.rpm 35 MB/s | 206 kB 00:00
(55/153): libssh-config-0.10.4-2.fc38.noarch.rp 2.4 MB/s | 9.2 kB 00:00
(56/153): libsepol-3.4-4.fc38.s390x.rpm 41 MB/s | 330 kB 00:00
(57/153): libtasn1-4.19.0-1.fc38.s390x.rpm 18 MB/s | 78 kB 00:00
(58/153): libtirpc-1.3.3-0.fc38.s390x.rpm 21 MB/s | 97 kB 00:00
(59/153): libverto-0.3.2-4.fc38.s390x.rpm 5.2 MB/s | 21 kB 00:00
(60/153): libutempter-1.2.1-7.fc38.s390x.rpm 4.2 MB/s | 26 kB 00:00
(61/153): libunistring-1.0-2.fc38.s390x.rpm 45 MB/s | 552 kB 00:00
(62/153): libxcrypt-4.4.33-5.fc38.s390x.rpm 23 MB/s | 125 kB 00:00
(63/153): lua-libs-5.4.4-6.fc38.s390x.rpm 30 MB/s | 141 kB 00:00
(64/153): lz4-libs-1.9.3-5.fc38.s390x.rpm 18 MB/s | 88 kB 00:00
(65/153): libxml2-2.10.3-2.fc38.s390x.rpm 58 MB/s | 714 kB 00:00
(66/153): ncurses-base-6.3-5.20221126.fc38.noar 12 MB/s | 62 kB 00:00
(67/153): mpfr-4.1.1-2.fc38.s390x.rpm 52 MB/s | 553 kB 00:00
(68/153): ncurses-libs-6.3-5.20221126.fc38.s390 43 MB/s | 357 kB 00:00
(69/153): nettle-3.8-2.fc38.s390x.rpm 46 MB/s | 444 kB 00:00
(70/153): openldap-2.6.3-1.fc38.s390x.rpm 36 MB/s | 262 kB 00:00
(71/153): p11-kit-trust-0.24.1-5.fc38.s390x.rpm 27 MB/s | 137 kB 00:00
(72/153): p11-kit-0.24.1-5.fc38.s390x.rpm 47 MB/s | 370 kB 00:00
(73/153): pam-1.5.2-15.fc38.s390x.rpm 98 MB/s | 528 kB 00:00
(74/153): pam-libs-1.5.2-15.fc38.s390x.rpm 11 MB/s | 59 kB 00:00
(75/153): patch-2.7.6-17.fc38.s390x.rpm 33 MB/s | 134 kB 00:00
(76/153): pcre2-10.40-1.fc38.1.s390x.rpm 31 MB/s | 251 kB 00:00
(77/153): pcre2-syntax-10.40-1.fc38.1.noarch.rp 28 MB/s | 143 kB 00:00
(78/153): pkgconf-1.8.0-3.fc38.s390x.rpm 14 MB/s | 42 kB 00:00
(79/153): pkgconf-m4-1.8.0-3.fc38.noarch.rpm 3.3 MB/s | 15 kB 00:00
(80/153): pkgconf-pkg-config-1.8.0-3.fc38.s390x 3.6 MB/s | 11 kB 00:00
(81/153): openssl-libs-3.0.5-6.fc38.s390x.rpm 55 MB/s | 1.8 MB 00:00
(82/153): popt-1.19-1.fc38.s390x.rpm 13 MB/s | 63 kB 00:00
(83/153): libgcc-13.0.0-0.4.fc38.s390x.rpm 65 kB/s | 66 kB 00:01
(84/153): libgomp-13.0.0-0.4.fc38.s390x.rpm 231 kB/s | 305 kB 00:01
(85/153): libstdc++-13.0.0-0.4.fc38.s390x.rpm 540 kB/s | 889 kB 00:01
(86/153): ansible-srpm-macros-1-8.1.fc38.noarch 7.3 kB/s | 8.6 kB 00:01
(87/153): basesystem-11-14.fc37.noarch.rpm 9.3 kB/s | 7.0 kB 00:00
(88/153): audit-libs-3.0.9-2.fc38.s390x.rpm 20 kB/s | 114 kB 00:05
(89/153): ca-certificates-2022.2.54-5.fc37.noar 171 kB/s | 829 kB 00:04
(90/153): crypto-policies-20221215-1.gita4c31a3 19 kB/s | 90 kB 00:04
(91/153): efi-srpm-macros-5-6.fc37.noarch.rpm 63 kB/s | 22 kB 00:00
(92/153): debugedit-5.0-5.fc37.s390x.rpm 145 kB/s | 76 kB 00:00
(93/153): fedora-release-38-0.6.noarch.rpm 61 kB/s | 11 kB 00:00
(94/153): fedora-release-common-38-0.6.noarch.r 121 kB/s | 21 kB 00:00
(95/153): fedora-release-identity-basic-38-0.6. 65 kB/s | 11 kB 00:00
(96/153): fedora-gpg-keys-38-0.3.noarch.rpm 179 kB/s | 125 kB 00:00
(97/153): fedora-repos-38-0.3.noarch.rpm 58 kB/s | 10 kB 00:00
(98/153): fedora-repos-rawhide-38-0.3.noarch.rp 56 kB/s | 9.7 kB 00:00
(99/153): fonts-srpm-macros-2.0.5-10.fc38.noarc 150 kB/s | 26 kB 00:00
(100/153): fpc-srpm-macros-1.3-6.fc37.noarch.rp 44 kB/s | 7.7 kB 00:00
(101/153): ghc-srpm-macros-1.5.0-7.fc37.noarch. 44 kB/s | 7.8 kB 00:00
(102/153): filesystem-3.18-2.fc37.s390x.rpm 1.6 MB/s | 1.1 MB 00:00
(103/153): glibc-common-2.36.9000-19.fc38.s390x 1.7 MB/s | 306 kB 00:00
(104/153): glibc-gconv-extra-2.36.9000-19.fc38. 4.5 MB/s | 1.6 MB 00:00
(105/153): gdb-minimal-12.1-10.fc38.s390x.rpm 3.1 MB/s | 3.3 MB 00:01
(106/153): glibc-minimal-langpack-2.36.9000-19. 173 kB/s | 30 kB 00:00
(107/153): gnat-srpm-macros-4-16.fc37.noarch.rp 47 kB/s | 8.3 kB 00:00
(108/153): glibc-2.36.9000-19.fc38.s390x.rpm 1.5 MB/s | 1.6 MB 00:01
(109/153): go-srpm-macros-3.2.0-1.fc38.noarch.r 154 kB/s | 27 kB 00:00
(110/153): info-7.0.1-1.fc38.s390x.rpm 1.0 MB/s | 180 kB 00:00
(111/153): kernel-srpm-macros-1.0-15.fc37.noarc 53 kB/s | 9.4 kB 00:00
(112/153): libblkid-2.38.1-3.fc38.s390x.rpm 588 kB/s | 103 kB 00:00
(113/153): libfdisk-2.38.1-3.fc38.s390x.rpm 882 kB/s | 156 kB 00:00
(114/153): libmount-2.38.1-3.fc38.s390x.rpm 747 kB/s | 132 kB 00:00
(115/153): libpwquality-1.4.5-1.fc38.s390x.rpm 681 kB/s | 119 kB 00:00
(116/153): libsmartcols-2.38.1-3.fc38.s390x.rpm 360 kB/s | 63 kB 00:00
(117/153): libuuid-2.38.1-3.fc38.s390x.rpm 154 kB/s | 27 kB 00:00
(118/153): libzstd-1.5.2-3.fc37.s390x.rpm 1.5 MB/s | 274 kB 00:00
(119/153): lua-srpm-macros-1-7.fc37.noarch.rpm 50 kB/s | 8.8 kB 00:00
(120/153): nim-srpm-macros-3-7.fc37.noarch.rpm 48 kB/s | 8.4 kB 00:00
(121/153): ocaml-srpm-macros-7-2.fc37.noarch.rp 77 kB/s | 13 kB 00:00
(122/153): openblas-srpm-macros-2-12.fc37.noarc 43 kB/s | 7.5 kB 00:00
(123/153): package-notes-srpm-macros-0.5-6.fc38 60 kB/s | 11 kB 00:00
(124/153): perl-srpm-macros-1-47.fc38.noarch.rp 47 kB/s | 8.2 kB 00:00
(125/153): publicsuffix-list-dafsa-20221208-1.f 337 kB/s | 59 kB 00:00
(126/153): python-srpm-macros-3.11-6.fc38.noarc 140 kB/s | 25 kB 00:00
(127/153): qt5-srpm-macros-5.15.7-1.fc38.noarch 45 kB/s | 7.9 kB 00:00
(128/153): readline-8.2-2.fc38.s390x.rpm 1.2 MB/s | 213 kB 00:00
(129/153): redhat-rpm-config-235-1.fc38.noarch. 457 kB/s | 80 kB 00:00
(130/153): rpm-4.18.0-8.fc38.s390x.rpm 3.1 MB/s | 569 kB 00:00
(131/153): rpm-build-4.18.0-8.fc38.s390x.rpm 433 kB/s | 76 kB 00:00
(132/153): rpm-build-libs-4.18.0-8.fc38.s390x.r 523 kB/s | 92 kB 00:00
(133/153): rpm-libs-4.18.0-8.fc38.s390x.rpm 1.7 MB/s | 307 kB 00:00
(134/153): rpm-sequoia-1.2.0-1.fc38.s390x.rpm 5.1 MB/s | 960 kB 00:00
(135/153): rpmautospec-rpm-macros-0.3.1-1.fc38. 49 kB/s | 8.8 kB 00:00
(136/153): rust-srpm-macros-23-1.fc38.noarch.rp 54 kB/s | 9.4 kB 00:00
(137/153): setup-2.14.3-1.fc38.noarch.rpm 857 kB/s | 152 kB 00:00
(138/153): sed-4.8-11.fc37.s390x.rpm 1.7 MB/s | 304 kB 00:00
(139/153): shadow-utils-4.13-3.fc38.s390x.rpm 5.4 MB/s | 1.2 MB 00:00
(140/153): sqlite-libs-3.40.0-1.fc38.s390x.rpm 2.8 MB/s | 651 kB 00:00
(141/153): systemd-libs-252.4-598.fc38.s390x.rp 2.6 MB/s | 591 kB 00:00
(142/153): tar-1.34-5.fc38.s390x.rpm 4.7 MB/s | 876 kB 00:00
(143/153): unzip-6.0-58.fc38.s390x.rpm 982 kB/s | 177 kB 00:00
(144/153): tzdata-2022g-1.fc38.noarch.rpm 3.8 MB/s | 716 kB 00:00
(145/153): util-linux-2.38.1-3.fc38.s390x.rpm 12 MB/s | 2.3 MB 00:00
(146/153): util-linux-core-2.38.1-3.fc38.s390x. 2.5 MB/s | 462 kB 00:00
(147/153): which-2.21-36.fc38.s390x.rpm 236 kB/s | 42 kB 00:00
(148/153): xxhash-libs-0.8.1-3.fc37.s390x.rpm 208 kB/s | 36 kB 00:00
(149/153): xz-5.2.9-1.fc38.s390x.rpm 1.7 MB/s | 306 kB 00:00
(150/153): xz-libs-5.2.9-1.fc38.s390x.rpm 521 kB/s | 93 kB 00:00
(151/153): zip-3.0-35.fc38.s390x.rpm 1.4 MB/s | 261 kB 00:00
(152/153): zlib-1.2.13-1.fc38.s390x.rpm 547 kB/s | 96 kB 00:00
(153/153): zstd-1.5.2-3.fc37.s390x.rpm 2.2 MB/s | 410 kB 00:00
--------------------------------------------------------------------------------
Total 2.9 MB/s | 52 MB 00:18
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.s390x 1/1
Preparing : 1/1
Installing : libgcc-13.0.0-0.4.fc38.s390x 1/153
Running scriptlet: libgcc-13.0.0-0.4.fc38.s390x 1/153
Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/153
Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/153
Installing : fedora-release-identity-basic-38-0.6.noarch 3/153
Installing : tzdata-2022g-1.fc38.noarch 4/153
Installing : rust-srpm-macros-23-1.fc38.noarch 5/153
Installing : qt5-srpm-macros-5.15.7-1.fc38.noarch 6/153
Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 7/153
Installing : perl-srpm-macros-1-47.fc38.noarch 8/153
Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 9/153
Installing : openblas-srpm-macros-2-12.fc37.noarch 10/153
Installing : ocaml-srpm-macros-7-2.fc37.noarch 11/153
Installing : nim-srpm-macros-3-7.fc37.noarch 12/153
Installing : kernel-srpm-macros-1.0-15.fc37.noarch 13/153
Installing : gnat-srpm-macros-4-16.fc37.noarch 14/153
Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 15/153
Installing : fpc-srpm-macros-1.3-6.fc37.noarch 16/153
Installing : fedora-gpg-keys-38-0.3.noarch 17/153
Installing : fedora-release-38-0.6.noarch 18/153
Installing : fedora-release-common-38-0.6.noarch 19/153
Installing : fedora-repos-rawhide-38-0.3.noarch 20/153
Installing : fedora-repos-38-0.3.noarch 21/153
Installing : setup-2.14.3-1.fc38.noarch 22/153
warning: /etc/hosts created as /etc/hosts.rpmnew
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Installing : filesystem-3.18-2.fc37.s390x 23/153
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Installing : pkgconf-m4-1.8.0-3.fc38.noarch 26/153
Installing : pcre2-syntax-10.40-1.fc38.1.noarch 27/153
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Installing : glibc-gconv-extra-2.36.9000-19.fc38.s390x 30/153
Running scriptlet: glibc-gconv-extra-2.36.9000-19.fc38.s390x 30/153
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Installing : xz-libs-5.2.9-1.fc38.s390x 36/153
Installing : bzip2-libs-1.0.8-12.fc38.s390x 37/153
Installing : elfutils-libelf-0.188-3.fc38.s390x 38/153
Installing : gmp-1:6.2.1-3.fc38.s390x 39/153
Installing : popt-1.19-1.fc38.s390x 40/153
Installing : libstdc++-13.0.0-0.4.fc38.s390x 41/153
Installing : libuuid-2.38.1-3.fc38.s390x 42/153
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Installing : rpm-sequoia-1.2.0-1.fc38.s390x 86/153
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Installing : libverto-0.3.2-4.fc38.s390x 111/153
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Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 118/153
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Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 118/153
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Installing : cracklib-2.9.7-30.fc38.s390x 123/153
Installing : libpwquality-1.4.5-1.fc38.s390x 124/153
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Running scriptlet: rpm-4.18.0-8.fc38.s390x 142/153
Installing : rpm-4.18.0-8.fc38.s390x 142/153
Installing : efi-srpm-macros-5-6.fc37.noarch 143/153
Installing : lua-srpm-macros-1-7.fc37.noarch 144/153
Installing : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 145/153
Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 146/153
Installing : go-srpm-macros-3.2.0-1.fc38.noarch 147/153
Installing : python-srpm-macros-3.11-6.fc38.noarch 148/153
Installing : redhat-rpm-config-235-1.fc38.noarch 149/153
Installing : rpm-build-4.18.0-8.fc38.s390x 150/153
Installing : util-linux-2.38.1-3.fc38.s390x 151/153
Installing : which-2.21-36.fc38.s390x 152/153
Installing : info-7.0.1-1.fc38.s390x 153/153
Running scriptlet: filesystem-3.18-2.fc37.s390x 153/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.s390x 153/153
Running scriptlet: rpm-4.18.0-8.fc38.s390x 153/153
Running scriptlet: info-7.0.1-1.fc38.s390x 153/153
Verifying : alternatives-1.21-1.fc38.s390x 1/153
Verifying : authselect-1.4.2-1.fc38.s390x 2/153
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Verifying : bash-5.2.9-3.fc38.s390x 4/153
Verifying : binutils-2.39-6.fc38.s390x 5/153
Verifying : binutils-gold-2.39-6.fc38.s390x 6/153
Verifying : bzip2-1.0.8-12.fc38.s390x 7/153
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Verifying : coreutils-common-9.1-8.fc38.s390x 10/153
Verifying : cpio-2.13-13.fc38.s390x 11/153
Verifying : cracklib-2.9.7-30.fc38.s390x 12/153
Verifying : curl-7.87.0-1.fc38.s390x 13/153
Verifying : cyrus-sasl-lib-2.1.28-8.fc38.s390x 14/153
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Verifying : libbrotli-1.0.9-9.fc38.s390x 37/153
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Verifying : libtasn1-4.19.0-1.fc38.s390x 57/153
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Verifying : patch-2.7.6-17.fc38.s390x 76/153
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Verifying : popt-1.19-1.fc38.s390x 82/153
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Verifying : fedora-release-38-0.6.noarch 94/153
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Verifying : fedora-release-identity-basic-38-0.6.noarch 96/153
Verifying : fedora-repos-38-0.3.noarch 97/153
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Verifying : filesystem-3.18-2.fc37.s390x 99/153
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Verifying : libsmartcols-2.38.1-3.fc38.s390x 116/153
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Verifying : sed-4.8-11.fc37.s390x 137/153
Verifying : setup-2.14.3-1.fc38.noarch 138/153
Verifying : shadow-utils-2:4.13-3.fc38.s390x 139/153
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Installed:
alternatives-1.21-1.fc38.s390x
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-2.fc38.s390x
authselect-1.4.2-1.fc38.s390x
authselect-libs-1.4.2-1.fc38.s390x
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.s390x
binutils-2.39-6.fc38.s390x
binutils-gold-2.39-6.fc38.s390x
bzip2-1.0.8-12.fc38.s390x
bzip2-libs-1.0.8-12.fc38.s390x
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.s390x
coreutils-common-9.1-8.fc38.s390x
cpio-2.13-13.fc38.s390x
cracklib-2.9.7-30.fc38.s390x
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.s390x
cyrus-sasl-lib-2.1.28-8.fc38.s390x
debugedit-5.0-5.fc37.s390x
diffutils-3.8-3.fc38.s390x
dwz-0.15-1.fc38.s390x
ed-1.18-2.fc38.s390x
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.s390x
elfutils-debuginfod-client-0.188-3.fc38.s390x
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.s390x
elfutils-libs-0.188-3.fc38.s390x
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-4.fc38.s390x
file-libs-5.42-4.fc38.s390x
filesystem-3.18-2.fc37.s390x
findutils-1:4.9.0-2.fc38.s390x
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc38.s390x
gdb-minimal-12.1-10.fc38.s390x
gdbm-libs-1:1.23-2.fc38.s390x
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-19.fc38.s390x
glibc-common-2.36.9000-19.fc38.s390x
glibc-gconv-extra-2.36.9000-19.fc38.s390x
glibc-minimal-langpack-2.36.9000-19.fc38.s390x
gmp-1:6.2.1-3.fc38.s390x
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-1.fc38.s390x
gzip-1.12-2.fc38.s390x
info-7.0.1-1.fc38.s390x
jansson-2.13.1-5.fc38.s390x
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc38.s390x
krb5-libs-1.20.1-3.fc38.s390x
libacl-2.3.1-4.fc38.s390x
libarchive-3.6.1-3.fc38.s390x
libattr-2.5.1-5.fc38.s390x
libblkid-2.38.1-3.fc38.s390x
libbrotli-1.0.9-9.fc38.s390x
libcap-2.48-5.fc38.s390x
libcap-ng-0.8.3-4.fc38.s390x
libcom_err-1.46.5-3.fc38.s390x
libcurl-7.87.0-1.fc38.s390x
libdb-5.3.28-54.fc38.s390x
libeconf-0.4.0-4.fc38.s390x
libevent-2.1.12-7.fc38.s390x
libfdisk-2.38.1-3.fc38.s390x
libffi-3.4.4-1.fc38.s390x
libgcc-13.0.0-0.4.fc38.s390x
libgomp-13.0.0-0.4.fc38.s390x
libidn2-2.3.4-1.fc38.s390x
libmount-2.38.1-3.fc38.s390x
libnghttp2-1.51.0-1.fc38.s390x
libnsl2-2.0.0-4.fc38.s390x
libpkgconf-1.8.0-3.fc38.s390x
libpsl-0.21.1-6.fc38.s390x
libpwquality-1.4.5-1.fc38.s390x
libselinux-3.4-6.fc38.s390x
libsemanage-3.4-6.fc38.s390x
libsepol-3.4-4.fc38.s390x
libsigsegv-2.14-3.fc38.s390x
libsmartcols-2.38.1-3.fc38.s390x
libssh-0.10.4-2.fc38.s390x
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.s390x
libtasn1-4.19.0-1.fc38.s390x
libtirpc-1.3.3-0.fc38.s390x
libunistring-1.0-2.fc38.s390x
libutempter-1.2.1-7.fc38.s390x
libuuid-2.38.1-3.fc38.s390x
libverto-0.3.2-4.fc38.s390x
libxcrypt-4.4.33-5.fc38.s390x
libxml2-2.10.3-2.fc38.s390x
libzstd-1.5.2-3.fc37.s390x
lua-libs-5.4.4-6.fc38.s390x
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc38.s390x
mpfr-4.1.1-2.fc38.s390x
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.s390x
nettle-3.8-2.fc38.s390x
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.s390x
openssl-libs-1:3.0.5-6.fc38.s390x
p11-kit-0.24.1-5.fc38.s390x
p11-kit-trust-0.24.1-5.fc38.s390x
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.s390x
pam-libs-1.5.2-15.fc38.s390x
patch-2.7.6-17.fc38.s390x
pcre2-10.40-1.fc38.1.s390x
pcre2-syntax-10.40-1.fc38.1.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc38.s390x
pkgconf-m4-1.8.0-3.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc38.s390x
popt-1.19-1.fc38.s390x
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
qt5-srpm-macros-5.15.7-1.fc38.noarch
readline-8.2-2.fc38.s390x
redhat-rpm-config-235-1.fc38.noarch
rpm-4.18.0-8.fc38.s390x
rpm-build-4.18.0-8.fc38.s390x
rpm-build-libs-4.18.0-8.fc38.s390x
rpm-libs-4.18.0-8.fc38.s390x
rpm-sequoia-1.2.0-1.fc38.s390x
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc37.s390x
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.s390x
sqlite-libs-3.40.0-1.fc38.s390x
systemd-libs-252.4-598.fc38.s390x
tar-2:1.34-5.fc38.s390x
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.s390x
util-linux-2.38.1-3.fc38.s390x
util-linux-core-2.38.1-3.fc38.s390x
which-2.21-36.fc38.s390x
xxhash-libs-0.8.1-3.fc37.s390x
xz-5.2.9-1.fc38.s390x
xz-libs-5.2.9-1.fc38.s390x
zip-3.0-35.fc38.s390x
zlib-1.2.13-1.fc38.s390x
zstd-1.5.2-3.fc37.s390x
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: cyrus-sasl-lib-2.1.28-8.fc38.s390x
dwz-0.15-1.fc38.s390x
file-5.42-4.fc38.s390x
libxml2-2.10.3-2.fc38.s390x
rpm-build-libs-4.18.0-8.fc38.s390x
libxcrypt-4.4.33-5.fc38.s390x
binutils-2.39-6.fc38.s390x
elfutils-default-yama-scope-0.188-3.fc38.noarch
libcom_err-1.46.5-3.fc38.s390x
mpfr-4.1.1-2.fc38.s390x
fedora-release-identity-basic-38-0.6.noarch
systemd-libs-252.4-598.fc38.s390x
tzdata-2022g-1.fc38.noarch
libpwquality-1.4.5-1.fc38.s390x
libpkgconf-1.8.0-3.fc38.s390x
libselinux-3.4-6.fc38.s390x
lz4-libs-1.9.3-5.fc38.s390x
bzip2-libs-1.0.8-12.fc38.s390x
qt5-srpm-macros-5.15.7-1.fc38.noarch
kernel-srpm-macros-1.0-15.fc37.noarch
sqlite-libs-3.40.0-1.fc38.s390x
basesystem-11-14.fc37.noarch
libutempter-1.2.1-7.fc38.s390x
libssh-0.10.4-2.fc38.s390x
libacl-2.3.1-4.fc38.s390x
rpm-libs-4.18.0-8.fc38.s390x
fedora-gpg-keys-38-0.3.noarch
cpio-2.13-13.fc38.s390x
rust-srpm-macros-23-1.fc38.noarch
libidn2-2.3.4-1.fc38.s390x
libcap-2.48-5.fc38.s390x
perl-srpm-macros-1-47.fc38.noarch
libdb-5.3.28-54.fc38.s390x
openldap-2.6.3-1.fc38.s390x
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
libtirpc-1.3.3-0.fc38.s390x
libcurl-7.87.0-1.fc38.s390x
ncurses-libs-6.3-5.20221126.fc38.s390x
libffi-3.4.4-1.fc38.s390x
zip-3.0-35.fc38.s390x
pkgconf-1.8.0-3.fc38.s390x
setup-2.14.3-1.fc38.noarch
elfutils-libelf-0.188-3.fc38.s390x
pcre2-10.40-1.fc38.1.s390x
cracklib-2.9.7-30.fc38.s390x
libevent-2.1.12-7.fc38.s390x
glibc-gconv-extra-2.36.9000-19.fc38.s390x
libfdisk-2.38.1-3.fc38.s390x
libstdc++-13.0.0-0.4.fc38.s390x
rpm-4.18.0-8.fc38.s390x
libnsl2-2.0.0-4.fc38.s390x
gmp-6.2.1-3.fc38.s390x
rpm-sequoia-1.2.0-1.fc38.s390x
bzip2-1.0.8-12.fc38.s390x
unzip-6.0-58.fc38.s390x
jansson-2.13.1-5.fc38.s390x
efi-srpm-macros-5-6.fc37.noarch
util-linux-2.38.1-3.fc38.s390x
libbrotli-1.0.9-9.fc38.s390x
nettle-3.8-2.fc38.s390x
patch-2.7.6-17.fc38.s390x
ghc-srpm-macros-1.5.0-7.fc37.noarch
pam-libs-1.5.2-15.fc38.s390x
openssl-libs-3.0.5-6.fc38.s390x
xxhash-libs-0.8.1-3.fc37.s390x
elfutils-0.188-3.fc38.s390x
libblkid-2.38.1-3.fc38.s390x
lua-srpm-macros-1-7.fc37.noarch
zstd-1.5.2-3.fc37.s390x
debugedit-5.0-5.fc37.s390x
elfutils-debuginfod-client-0.188-3.fc38.s390x
gpg-pubkey-5323552a-6112bcdc
p11-kit-0.24.1-5.fc38.s390x
fpc-srpm-macros-1.3-6.fc37.noarch
libssh-config-0.10.4-2.fc38.noarch
gdb-minimal-12.1-10.fc38.s390x
pcre2-syntax-10.40-1.fc38.1.noarch
fedora-repos-rawhide-38-0.3.noarch
package-notes-srpm-macros-0.5-6.fc38.noarch
fedora-repos-38-0.3.noarch
grep-3.8-1.fc38.s390x
fonts-srpm-macros-2.0.5-10.fc38.noarch
lua-libs-5.4.4-6.fc38.s390x
tar-1.34-5.fc38.s390x
libzstd-1.5.2-3.fc37.s390x
krb5-libs-1.20.1-3.fc38.s390x
p11-kit-trust-0.24.1-5.fc38.s390x
diffutils-3.8-3.fc38.s390x
libsepol-3.4-4.fc38.s390x
findutils-4.9.0-2.fc38.s390x
pkgconf-m4-1.8.0-3.fc38.noarch
xz-5.2.9-1.fc38.s390x
pkgconf-pkg-config-1.8.0-3.fc38.s390x
gdbm-libs-1.23-2.fc38.s390x
libmount-2.38.1-3.fc38.s390x
libnghttp2-1.51.0-1.fc38.s390x
libpsl-0.21.1-6.fc38.s390x
xz-libs-5.2.9-1.fc38.s390x
glibc-2.36.9000-19.fc38.s390x
gpg-pubkey-eb10b464-6202d9c6
util-linux-core-2.38.1-3.fc38.s390x
filesystem-3.18-2.fc37.s390x
gawk-5.1.1-4.fc38.s390x
glibc-minimal-langpack-2.36.9000-19.fc38.s390x
ed-1.18-2.fc38.s390x
rpm-build-4.18.0-8.fc38.s390x
file-libs-5.42-4.fc38.s390x
redhat-rpm-config-235-1.fc38.noarch
binutils-gold-2.39-6.fc38.s390x
libsmartcols-2.38.1-3.fc38.s390x
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
libgomp-13.0.0-0.4.fc38.s390x
gzip-1.12-2.fc38.s390x
zlib-1.2.13-1.fc38.s390x
ansible-srpm-macros-1-8.1.fc38.noarch
fedora-release-common-38-0.6.noarch
popt-1.19-1.fc38.s390x
audit-libs-3.0.9-2.fc38.s390x
ocaml-srpm-macros-7-2.fc37.noarch
pam-1.5.2-15.fc38.s390x
readline-8.2-2.fc38.s390x
libeconf-0.4.0-4.fc38.s390x
elfutils-libs-0.188-3.fc38.s390x
libgcc-13.0.0-0.4.fc38.s390x
libtasn1-4.19.0-1.fc38.s390x
glibc-common-2.36.9000-19.fc38.s390x
coreutils-9.1-8.fc38.s390x
libuuid-2.38.1-3.fc38.s390x
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-common-9.1-8.fc38.s390x
which-2.21-36.fc38.s390x
nim-srpm-macros-3-7.fc37.noarch
bash-5.2.9-3.fc38.s390x
libverto-0.3.2-4.fc38.s390x
ncurses-base-6.3-5.20221126.fc38.noarch
curl-7.87.0-1.fc38.s390x
publicsuffix-list-dafsa-20221208-1.fc38.noarch
libcap-ng-0.8.3-4.fc38.s390x
info-7.0.1-1.fc38.s390x
libsigsegv-2.14-3.fc38.s390x
sed-4.8-11.fc37.s390x
keyutils-libs-1.6.1-5.fc38.s390x
gnat-srpm-macros-4-16.fc37.noarch
authselect-1.4.2-1.fc38.s390x
authselect-libs-1.4.2-1.fc38.s390x
libarchive-3.6.1-3.fc38.s390x
libunistring-1.0-2.fc38.s390x
libsemanage-3.4-6.fc38.s390x
python-srpm-macros-3.11-6.fc38.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
shadow-utils-4.13-3.fc38.s390x
fedora-release-38-0.6.noarch
alternatives-1.21-1.fc38.s390x
openblas-srpm-macros-2-12.fc37.noarch
libattr-2.5.1-5.fc38.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1661817600
Wrote: /builddir/build/SRPMS/python-pysam-0.19.1-3.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-b9q1ndcj/python-pysam/python-pysam.spec) Config(child) 2 minutes 25 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/python-pysam-0.19.1-3.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672095339.867032 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/python-pysam-0.19.1-3.fc38.src.rpm) Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1672095339.867032/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1672095339.867032/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 573 B/s | 3.0 kB 00:05
Copr repository 10 MB/s | 32 MB 00:03
Additional repo https_jakub_fedorapeople_org_fe 4.2 kB/s | 3.0 kB 00:00
fedora 6.5 kB/s | 6.6 kB 00:01
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for python-pysam-0.19.1-3.fc38.src.rpm
Start: build setup for python-pysam-0.19.1-3.fc38.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1661817600
Wrote: /builddir/build/SRPMS/python-pysam-0.19.1-3.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 4.5 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 4.3 kB/s | 3.0 kB 00:00
fedora 14 kB/s | 6.6 kB 00:00
Dependencies resolved.
========================================================================================================================
Package Arch Version Repository Size
========================================================================================================================
Installing:
bzip2-devel s390x 1.0.8-12.fc38 copr_base 214 k
gcc s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 28 M
python3-Cython s390x 0.29.32-2.fc38 copr_base 2.5 M
python3-devel s390x 3.11.1-1.fc38 fedora 269 k
python3-setuptools noarch 65.5.1-1.fc38 fedora 1.7 M
python3-sphinx noarch 1:5.3.0-1.fc38 fedora 2.7 M
xz-devel s390x 5.2.9-1.fc38 fedora 58 k
zlib-devel s390x 1.2.13-1.fc38 fedora 45 k
Installing dependencies:
annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k
annobin-plugin-gcc s390x 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 888 k
cpp s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 8.9 M
expat s390x 2.5.0-1.fc38 copr_base 114 k
gc s390x 8.2.2-1.fc38 copr_base 114 k
gcc-plugin-annobin s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 28 k
glibc-devel s390x 2.36.9000-19.fc38 fedora 55 k
glibc-headers-s390 noarch 2.36.9000-19.fc38 fedora 516 k
guile22 s390x 2.2.7-6.fc38 copr_base 6.4 M
kernel-headers s390x 6.1.0-1.fc38 fedora 1.5 M
libasan s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 492 k
libatomic s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 18 k
libb2 s390x 0.98.1-7.fc38 copr_base 27 k
libmpc s390x 1.2.1-5.fc38 copr_base 65 k
libtool-ltdl s390x 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 38 k
libubsan s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 203 k
libxcrypt-devel s390x 4.4.33-5.fc38 copr_base 31 k
make s390x 1:4.3-11.fc38 copr_base 550 k
mpdecimal s390x 2.5.1-4.fc38 copr_base 115 k
pyproject-rpm-macros noarch 1.5.0-1.fc38 fedora 40 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-rpm-macros noarch 3.11-6.fc38 fedora 19 k
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 s390x 3.11.1-1.fc38 fedora 27 k
python3-babel noarch 2.10.3-3.fc37 fedora 6.5 M
python3-charset-normalizer noarch 2.1.0-2.fc37 fedora 102 k
python3-docutils noarch 0.19-1.fc38 fedora 1.1 M
python3-idna noarch 3.4-1.fc38 fedora 110 k
python3-imagesize noarch 1.4.1-1.fc38 fedora 22 k
python3-jinja2 noarch 3.0.3-6.fc38 fedora 630 k
python3-libs s390x 3.11.1-1.fc38 fedora 9.5 M
python3-markupsafe s390x 2.1.1-3.fc38 copr_base 31 k
python3-packaging noarch 21.3-7.fc38 fedora 98 k
python3-pygments noarch 2.13.0-1.fc38 fedora 2.4 M
python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k
python3-pysocks noarch 1.7.1-15.fc37 fedora 40 k
python3-pytz noarch 2022.7-1.fc38 fedora 65 k
python3-requests noarch 2.28.1-3.fc38 fedora 155 k
python3-rpm-generators noarch 13-2.fc37 fedora 30 k
python3-rpm-macros noarch 3.11-6.fc38 fedora 15 k
python3-six noarch 1.16.0-8.fc37 fedora 42 k
python3-snowballstemmer noarch 2.2.0-4.fc38 fedora 260 k
python3-sphinx-theme-alabaster noarch 0.7.12-16.fc37 fedora 29 k
python3-sphinxcontrib-applehelp noarch 1.0.2-10.fc37 fedora 48 k
python3-sphinxcontrib-devhelp noarch 1.0.2-10.fc37 fedora 42 k
python3-sphinxcontrib-htmlhelp noarch 2.0.0-7.fc37 fedora 55 k
python3-sphinxcontrib-jsmath noarch 1.0.1-18.fc37 fedora 17 k
python3-sphinxcontrib-qthelp noarch 1.0.3-11.fc37 fedora 48 k
python3-sphinxcontrib-serializinghtml noarch 1.1.5-6.fc37 fedora 48 k
python3-urllib3 noarch 1.26.12-1.fc38 fedora 253 k
Transaction Summary
========================================================================================================================
Install 58 Packages
Total download size: 80 M
Installed size: 284 M
Downloading Packages:
(1/58): expat-2.5.0-1.fc38.s390x.rpm 2.9 MB/s | 114 kB 00:00
(2/58): bzip2-devel-1.0.8-12.fc38.s390x.rpm 5.1 MB/s | 214 kB 00:00
(3/58): libb2-0.98.1-7.fc38.s390x.rpm 8.4 MB/s | 27 kB 00:00
(4/58): gc-8.2.2-1.fc38.s390x.rpm 2.5 MB/s | 114 kB 00:00
(5/58): libxcrypt-devel-4.4.33-5.fc38.s390x.rpm 12 MB/s | 31 kB 00:00
(6/58): libmpc-1.2.1-5.fc38.s390x.rpm 14 MB/s | 65 kB 00:00
(7/58): make-4.3-11.fc38.s390x.rpm 58 MB/s | 550 kB 00:00
(8/58): mpdecimal-2.5.1-4.fc38.s390x.rpm 7.3 MB/s | 115 kB 00:00
(9/58): python3-markupsafe-2.1.1-3.fc38.s390x.r 10 MB/s | 31 kB 00:00
(10/58): python3-Cython-0.29.32-2.fc38.s390x.rp 65 MB/s | 2.5 MB 00:00
(11/58): guile22-2.2.7-6.fc38.s390x.rpm 45 MB/s | 6.4 MB 00:00
(12/58): annobin-docs-10.99-1.0.1.fc38.noarch.r 81 kB/s | 93 kB 00:01
(13/58): annobin-plugin-gcc-10.99-1.0.1.fc38.s3 550 kB/s | 888 kB 00:01
(14/58): gcc-plugin-annobin-13.0.0-0.4.fc38.s39 179 kB/s | 28 kB 00:00
(15/58): libasan-13.0.0-0.4.fc38.s390x.rpm 3.0 MB/s | 492 kB 00:00
(16/58): libatomic-13.0.0-0.4.fc38.s390x.rpm 110 kB/s | 18 kB 00:00
(17/58): libtool-ltdl-2.4.7-3.0.1.fc38.s390x.rp 236 kB/s | 38 kB 00:00
(18/58): cpp-13.0.0-0.4.fc38.s390x.rpm 4.0 MB/s | 8.9 MB 00:02
(19/58): libubsan-13.0.0-0.4.fc38.s390x.rpm 1.2 MB/s | 203 kB 00:00
(20/58): gcc-13.0.0-0.4.fc38.s390x.rpm 13 MB/s | 28 MB 00:02
(21/58): glibc-devel-2.36.9000-19.fc38.s390x.rp 53 kB/s | 55 kB 00:01
(22/58): pyproject-rpm-macros-1.5.0-1.fc38.noar 255 kB/s | 40 kB 00:00
(23/58): glibc-headers-s390-2.36.9000-19.fc38.n 366 kB/s | 516 kB 00:01
(24/58): python-rpm-macros-3.11-6.fc38.noarch.r 122 kB/s | 19 kB 00:00
(25/58): python-pip-wheel-22.3.1-1.fc38.noarch. 1.8 MB/s | 1.4 MB 00:00
(26/58): python-setuptools-wheel-65.5.1-1.fc38. 2.2 MB/s | 715 kB 00:00
(27/58): python3-3.11.1-1.fc38.s390x.rpm 171 kB/s | 27 kB 00:00
(28/58): kernel-headers-6.1.0-1.fc38.s390x.rpm 1.2 MB/s | 1.5 MB 00:01
(29/58): python3-charset-normalizer-2.1.0-2.fc3 598 kB/s | 102 kB 00:00
(30/58): python3-devel-3.11.1-1.fc38.s390x.rpm 1.6 MB/s | 269 kB 00:00
(31/58): python3-docutils-0.19-1.fc38.noarch.rp 5.6 MB/s | 1.1 MB 00:00
(32/58): python3-idna-3.4-1.fc38.noarch.rpm 609 kB/s | 110 kB 00:00
(33/58): python3-babel-2.10.3-3.fc37.noarch.rpm 9.9 MB/s | 6.5 MB 00:00
(34/58): python3-imagesize-1.4.1-1.fc38.noarch. 135 kB/s | 22 kB 00:00
(35/58): python3-jinja2-3.0.3-6.fc38.noarch.rpm 3.4 MB/s | 630 kB 00:00
(36/58): python3-packaging-21.3-7.fc38.noarch.r 618 kB/s | 98 kB 00:00
(37/58): python3-pyparsing-3.0.9-2.fc37.noarch. 1.6 MB/s | 262 kB 00:00
(38/58): python3-pygments-2.13.0-1.fc38.noarch. 6.7 MB/s | 2.4 MB 00:00
(39/58): python3-pysocks-1.7.1-15.fc37.noarch.r 246 kB/s | 40 kB 00:00
(40/58): python3-libs-3.11.1-1.fc38.s390x.rpm 15 MB/s | 9.5 MB 00:00
(41/58): python3-pytz-2022.7-1.fc38.noarch.rpm 375 kB/s | 65 kB 00:00
(42/58): python3-requests-2.28.1-3.fc38.noarch. 843 kB/s | 155 kB 00:00
(43/58): python3-rpm-generators-13-2.fc37.noarc 190 kB/s | 30 kB 00:00
(44/58): python3-rpm-macros-3.11-6.fc38.noarch. 92 kB/s | 15 kB 00:00
(45/58): python3-setuptools-65.5.1-1.fc38.noarc 10 MB/s | 1.7 MB 00:00
(46/58): python3-six-1.16.0-8.fc37.noarch.rpm 265 kB/s | 42 kB 00:00
(47/58): python3-snowballstemmer-2.2.0-4.fc38.n 1.4 MB/s | 260 kB 00:00
(48/58): python3-sphinx-5.3.0-1.fc38.noarch.rpm 15 MB/s | 2.7 MB 00:00
(49/58): python3-sphinx-theme-alabaster-0.7.12- 176 kB/s | 29 kB 00:00
(50/58): python3-sphinxcontrib-applehelp-1.0.2- 285 kB/s | 48 kB 00:00
(51/58): python3-sphinxcontrib-devhelp-1.0.2-10 251 kB/s | 42 kB 00:00
(52/58): python3-sphinxcontrib-htmlhelp-2.0.0-7 342 kB/s | 55 kB 00:00
(53/58): python3-sphinxcontrib-jsmath-1.0.1-18. 109 kB/s | 17 kB 00:00
(54/58): python3-sphinxcontrib-qthelp-1.0.3-11. 267 kB/s | 48 kB 00:00
(55/58): python3-sphinxcontrib-serializinghtml- 301 kB/s | 48 kB 00:00
(56/58): python3-urllib3-1.26.12-1.fc38.noarch. 1.4 MB/s | 253 kB 00:00
(57/58): xz-devel-5.2.9-1.fc38.s390x.rpm 283 kB/s | 58 kB 00:00
(58/58): zlib-devel-1.2.13-1.fc38.s390x.rpm 238 kB/s | 45 kB 00:00
--------------------------------------------------------------------------------
Total 6.5 MB/s | 80 MB 00:12
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python-rpm-macros-3.11-6.fc38.noarch 1/58
Installing : python3-rpm-macros-3.11-6.fc38.noarch 2/58
Installing : libmpc-1.2.1-5.fc38.s390x 3/58
Installing : cpp-13.0.0-0.4.fc38.s390x 4/58
Installing : pyproject-rpm-macros-1.5.0-1.fc38.noarch 5/58
Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 6/58
Installing : python-pip-wheel-22.3.1-1.fc38.noarch 7/58
Installing : kernel-headers-6.1.0-1.fc38.s390x 8/58
Installing : glibc-headers-s390-2.36.9000-19.fc38.noarch 9/58
Installing : glibc-devel-2.36.9000-19.fc38.s390x 10/58
Installing : libxcrypt-devel-4.4.33-5.fc38.s390x 11/58
Installing : libubsan-13.0.0-0.4.fc38.s390x 12/58
Installing : libtool-ltdl-2.4.7-3.0.1.fc38.s390x 13/58
Installing : libatomic-13.0.0-0.4.fc38.s390x 14/58
Installing : libasan-13.0.0-0.4.fc38.s390x 15/58
Installing : annobin-docs-10.99-1.0.1.fc38.noarch 16/58
Installing : mpdecimal-2.5.1-4.fc38.s390x 17/58
Installing : libb2-0.98.1-7.fc38.s390x 18/58
Installing : gc-8.2.2-1.fc38.s390x 19/58
Installing : guile22-2.2.7-6.fc38.s390x 20/58
Installing : make-1:4.3-11.fc38.s390x 21/58
Installing : gcc-13.0.0-0.4.fc38.s390x 22/58
Running scriptlet: gcc-13.0.0-0.4.fc38.s390x 22/58
Installing : expat-2.5.0-1.fc38.s390x 23/58
Installing : python3-3.11.1-1.fc38.s390x 24/58
Installing : python3-libs-3.11.1-1.fc38.s390x 25/58
Installing : python3-idna-3.4-1.fc38.noarch 26/58
Installing : python3-markupsafe-2.1.1-3.fc38.s390x 27/58
Installing : python3-jinja2-3.0.3-6.fc38.noarch 28/58
Installing : python3-charset-normalizer-2.1.0-2.fc37.noarch 29/58
Installing : python3-docutils-0.19-1.fc38.noarch 30/58
Installing : python3-imagesize-1.4.1-1.fc38.noarch 31/58
Installing : python3-pygments-2.13.0-1.fc38.noarch 32/58
Installing : python3-pyparsing-3.0.9-2.fc37.noarch 33/58
Installing : python3-packaging-21.3-7.fc38.noarch 34/58
Installing : python3-rpm-generators-13-2.fc37.noarch 35/58
Installing : python3-pysocks-1.7.1-15.fc37.noarch 36/58
Installing : python3-pytz-2022.7-1.fc38.noarch 37/58
Installing : python3-setuptools-65.5.1-1.fc38.noarch 38/58
Installing : python3-babel-2.10.3-3.fc37.noarch 39/58
Installing : python3-six-1.16.0-8.fc37.noarch 40/58
Installing : python3-urllib3-1.26.12-1.fc38.noarch 41/58
Installing : python3-requests-2.28.1-3.fc38.noarch 42/58
Installing : python3-snowballstemmer-2.2.0-4.fc38.noarch 43/58
Installing : python3-sphinx-theme-alabaster-0.7.12-16.fc37.noar 44/58
Installing : python3-sphinxcontrib-applehelp-1.0.2-10.fc37.noar 45/58
Installing : python3-sphinxcontrib-devhelp-1.0.2-10.fc37.noarch 46/58
Installing : python3-sphinxcontrib-htmlhelp-2.0.0-7.fc37.noarch 47/58
Installing : python3-sphinxcontrib-jsmath-1.0.1-18.fc37.noarch 48/58
Installing : python3-sphinxcontrib-qthelp-1.0.3-11.fc37.noarch 49/58
Installing : python3-sphinxcontrib-serializinghtml-1.1.5-6.fc37 50/58
Installing : python3-sphinx-1:5.3.0-1.fc38.noarch 51/58
Installing : python3-devel-3.11.1-1.fc38.s390x 52/58
Installing : python3-Cython-0.29.32-2.fc38.s390x 53/58
Installing : annobin-plugin-gcc-10.99-1.0.1.fc38.s390x 54/58
Running scriptlet: annobin-plugin-gcc-10.99-1.0.1.fc38.s390x 54/58
Installing : gcc-plugin-annobin-13.0.0-0.4.fc38.s390x 55/58
Installing : zlib-devel-1.2.13-1.fc38.s390x 56/58
Installing : xz-devel-5.2.9-1.fc38.s390x 57/58
Installing : bzip2-devel-1.0.8-12.fc38.s390x 58/58
Running scriptlet: bzip2-devel-1.0.8-12.fc38.s390x 58/58
Verifying : bzip2-devel-1.0.8-12.fc38.s390x 1/58
Verifying : expat-2.5.0-1.fc38.s390x 2/58
Verifying : gc-8.2.2-1.fc38.s390x 3/58
Verifying : guile22-2.2.7-6.fc38.s390x 4/58
Verifying : libb2-0.98.1-7.fc38.s390x 5/58
Verifying : libmpc-1.2.1-5.fc38.s390x 6/58
Verifying : libxcrypt-devel-4.4.33-5.fc38.s390x 7/58
Verifying : make-1:4.3-11.fc38.s390x 8/58
Verifying : mpdecimal-2.5.1-4.fc38.s390x 9/58
Verifying : python3-Cython-0.29.32-2.fc38.s390x 10/58
Verifying : python3-markupsafe-2.1.1-3.fc38.s390x 11/58
Verifying : annobin-docs-10.99-1.0.1.fc38.noarch 12/58
Verifying : annobin-plugin-gcc-10.99-1.0.1.fc38.s390x 13/58
Verifying : cpp-13.0.0-0.4.fc38.s390x 14/58
Verifying : gcc-13.0.0-0.4.fc38.s390x 15/58
Verifying : gcc-plugin-annobin-13.0.0-0.4.fc38.s390x 16/58
Verifying : libasan-13.0.0-0.4.fc38.s390x 17/58
Verifying : libatomic-13.0.0-0.4.fc38.s390x 18/58
Verifying : libtool-ltdl-2.4.7-3.0.1.fc38.s390x 19/58
Verifying : libubsan-13.0.0-0.4.fc38.s390x 20/58
Verifying : glibc-devel-2.36.9000-19.fc38.s390x 21/58
Verifying : glibc-headers-s390-2.36.9000-19.fc38.noarch 22/58
Verifying : kernel-headers-6.1.0-1.fc38.s390x 23/58
Verifying : pyproject-rpm-macros-1.5.0-1.fc38.noarch 24/58
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 25/58
Verifying : python-rpm-macros-3.11-6.fc38.noarch 26/58
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 27/58
Verifying : python3-3.11.1-1.fc38.s390x 28/58
Verifying : python3-babel-2.10.3-3.fc37.noarch 29/58
Verifying : python3-charset-normalizer-2.1.0-2.fc37.noarch 30/58
Verifying : python3-devel-3.11.1-1.fc38.s390x 31/58
Verifying : python3-docutils-0.19-1.fc38.noarch 32/58
Verifying : python3-idna-3.4-1.fc38.noarch 33/58
Verifying : python3-imagesize-1.4.1-1.fc38.noarch 34/58
Verifying : python3-jinja2-3.0.3-6.fc38.noarch 35/58
Verifying : python3-libs-3.11.1-1.fc38.s390x 36/58
Verifying : python3-packaging-21.3-7.fc38.noarch 37/58
Verifying : python3-pygments-2.13.0-1.fc38.noarch 38/58
Verifying : python3-pyparsing-3.0.9-2.fc37.noarch 39/58
Verifying : python3-pysocks-1.7.1-15.fc37.noarch 40/58
Verifying : python3-pytz-2022.7-1.fc38.noarch 41/58
Verifying : python3-requests-2.28.1-3.fc38.noarch 42/58
Verifying : python3-rpm-generators-13-2.fc37.noarch 43/58
Verifying : python3-rpm-macros-3.11-6.fc38.noarch 44/58
Verifying : python3-setuptools-65.5.1-1.fc38.noarch 45/58
Verifying : python3-six-1.16.0-8.fc37.noarch 46/58
Verifying : python3-snowballstemmer-2.2.0-4.fc38.noarch 47/58
Verifying : python3-sphinx-1:5.3.0-1.fc38.noarch 48/58
Verifying : python3-sphinx-theme-alabaster-0.7.12-16.fc37.noar 49/58
Verifying : python3-sphinxcontrib-applehelp-1.0.2-10.fc37.noar 50/58
Verifying : python3-sphinxcontrib-devhelp-1.0.2-10.fc37.noarch 51/58
Verifying : python3-sphinxcontrib-htmlhelp-2.0.0-7.fc37.noarch 52/58
Verifying : python3-sphinxcontrib-jsmath-1.0.1-18.fc37.noarch 53/58
Verifying : python3-sphinxcontrib-qthelp-1.0.3-11.fc37.noarch 54/58
Verifying : python3-sphinxcontrib-serializinghtml-1.1.5-6.fc37 55/58
Verifying : python3-urllib3-1.26.12-1.fc38.noarch 56/58
Verifying : xz-devel-5.2.9-1.fc38.s390x 57/58
Verifying : zlib-devel-1.2.13-1.fc38.s390x 58/58
Installed:
annobin-docs-10.99-1.0.1.fc38.noarch
annobin-plugin-gcc-10.99-1.0.1.fc38.s390x
bzip2-devel-1.0.8-12.fc38.s390x
cpp-13.0.0-0.4.fc38.s390x
expat-2.5.0-1.fc38.s390x
gc-8.2.2-1.fc38.s390x
gcc-13.0.0-0.4.fc38.s390x
gcc-plugin-annobin-13.0.0-0.4.fc38.s390x
glibc-devel-2.36.9000-19.fc38.s390x
glibc-headers-s390-2.36.9000-19.fc38.noarch
guile22-2.2.7-6.fc38.s390x
kernel-headers-6.1.0-1.fc38.s390x
libasan-13.0.0-0.4.fc38.s390x
libatomic-13.0.0-0.4.fc38.s390x
libb2-0.98.1-7.fc38.s390x
libmpc-1.2.1-5.fc38.s390x
libtool-ltdl-2.4.7-3.0.1.fc38.s390x
libubsan-13.0.0-0.4.fc38.s390x
libxcrypt-devel-4.4.33-5.fc38.s390x
make-1:4.3-11.fc38.s390x
mpdecimal-2.5.1-4.fc38.s390x
pyproject-rpm-macros-1.5.0-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-rpm-macros-3.11-6.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.s390x
python3-Cython-0.29.32-2.fc38.s390x
python3-babel-2.10.3-3.fc37.noarch
python3-charset-normalizer-2.1.0-2.fc37.noarch
python3-devel-3.11.1-1.fc38.s390x
python3-docutils-0.19-1.fc38.noarch
python3-idna-3.4-1.fc38.noarch
python3-imagesize-1.4.1-1.fc38.noarch
python3-jinja2-3.0.3-6.fc38.noarch
python3-libs-3.11.1-1.fc38.s390x
python3-markupsafe-2.1.1-3.fc38.s390x
python3-packaging-21.3-7.fc38.noarch
python3-pygments-2.13.0-1.fc38.noarch
python3-pyparsing-3.0.9-2.fc37.noarch
python3-pysocks-1.7.1-15.fc37.noarch
python3-pytz-2022.7-1.fc38.noarch
python3-requests-2.28.1-3.fc38.noarch
python3-rpm-generators-13-2.fc37.noarch
python3-rpm-macros-3.11-6.fc38.noarch
python3-setuptools-65.5.1-1.fc38.noarch
python3-six-1.16.0-8.fc37.noarch
python3-snowballstemmer-2.2.0-4.fc38.noarch
python3-sphinx-1:5.3.0-1.fc38.noarch
python3-sphinx-theme-alabaster-0.7.12-16.fc37.noarch
python3-sphinxcontrib-applehelp-1.0.2-10.fc37.noarch
python3-sphinxcontrib-devhelp-1.0.2-10.fc37.noarch
python3-sphinxcontrib-htmlhelp-2.0.0-7.fc37.noarch
python3-sphinxcontrib-jsmath-1.0.1-18.fc37.noarch
python3-sphinxcontrib-qthelp-1.0.3-11.fc37.noarch
python3-sphinxcontrib-serializinghtml-1.1.5-6.fc37.noarch
python3-urllib3-1.26.12-1.fc38.noarch
xz-devel-5.2.9-1.fc38.s390x
zlib-devel-1.2.13-1.fc38.s390x
Complete!
Finish: build setup for python-pysam-0.19.1-3.fc38.src.rpm
Start: rpmbuild python-pysam-0.19.1-3.fc38.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1661817600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.CfCM08
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pysam-0.19.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysam-0.19.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pysam-0.19.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -rf pysam.egg-info
++ grep -rl '/\* Generated by Cython'
+ rm pysam/libcvcf.c pysam/libcutils.c pysam/libctabixproxies.c pysam/libctabix.c pysam/libcsamtools.c pysam/libcsamfile.c pysam/libchtslib.c pysam/libcfaidx.c pysam/libcbgzf.c pysam/libcbcftools.c pysam/libcbcf.c pysam/libcalignmentfile.c pysam/libcalignedsegment.c
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Fjt1dv
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysam-0.19.1
+ FORCE_CYTHON=1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
# pysam: (env) CC=gcc
# pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection
# pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
checking for curl/curl.h... no
checking for curl_easy_pause in -lcurl... no
checking for curl_easy_init in -lcurl... no
configure: error: libcurl library not found
Support for HTTPS and other SSL-based URLs requires routines from the libcurl
library <http://curl.se/libcurl/>. Building HTSlib with libcurl enabled
requires libcurl development files to be installed on the build machine; you
may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on
Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions
or Cygwin) is installed.
Either configure with --disable-libcurl or resolve this error to build HTSlib.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
configure: WARNING: GCS support not enabled: requires libcurl support
configure: WARNING: S3 support not enabled: requires libcurl support
checking for library containing regcomp... none required
checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: linking htscodecs_bundled.mk to htscodecs.mk
# pysam: htslib configure options: --disable-libcurl
# pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o
# pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm
# pysam: htslib_config PLATFORM=default
# pysam: config_option: ENABLE_GCS=0
# pysam: config_option: ENABLE_PLUGINS=0
# pysam: config_option: ENABLE_S3=0
# pysam: config_option: HAVE_COMMONCRYPTO=0
# pysam: config_option: HAVE_HMAC=0
# pysam: config_option: HAVE_LIBBZ2=1
# pysam: config_option: HAVE_LIBCURL=0
# pysam: config_option: HAVE_LIBDEFLATE=0
# pysam: config_option: HAVE_LIBLZMA=1
# pysam: config_option: HAVE_MMAP=1
running build
running build_py
creating build
creating build/lib.linux-s390x-cpython-311
creating build/lib.linux-s390x-cpython-311/pysam
copying pysam/config.py -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/version.py -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/utils.py -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/samtools.py -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/bcftools.py -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/__init__.py -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/Pileup.py -> build/lib.linux-s390x-cpython-311/pysam
creating build/lib.linux-s390x-cpython-311/pysam/include
copying pysam/include/__init__.py -> build/lib.linux-s390x-cpython-311/pysam/include
copying pysam/libcvcf.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcutils.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libctabixproxies.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libctabix.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcsamtools.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcsamfile.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libchtslib.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcfaidx.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcbcftools.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcbcf.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcalignmentfile.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcalignedsegment.pxd -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/version.h -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/pysam_util.h -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/pysam_stream.h -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/htslib_util.h -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/csamtools_util.h -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/cbcftools_util.h -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/py.typed -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/version.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcvcf.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcutils.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libctabixproxies.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libctabix.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcsamtools.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcsamfile.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libchtslib.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcfaidx.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcbgzf.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcbcftools.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcbcf.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcalignmentfile.pyi -> build/lib.linux-s390x-cpython-311/pysam
copying pysam/libcalignedsegment.pyi -> build/lib.linux-s390x-cpython-311/pysam
creating build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/config.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/tmp_file.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/stats_isize.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/splaysort.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/samtools.pysam.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/samtools.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/sample.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/sam_opts.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/consensus_pileup.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/bedidx.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/bam_plbuf.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/bam_lpileup.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/bam_ampliconclip.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
copying samtools/bam.h -> build/lib.linux-s390x-cpython-311/pysam/include/samtools
creating build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/config.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/vcmp.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/vcfbuf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/variantkey.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/utlist.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/tsv2vcf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/str_finder.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/smpl_ilist.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/regidx.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/rbuf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/prob1.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/ploidy.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/mw.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/kmin.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/kheap.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/khash_str2str.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/hex.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/hclust.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/gvcf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/filter.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/extsort.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/dist.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/dbuf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/convert.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/cols.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/call.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/bin.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/bcftools.pysam.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/bcftools.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/bam_sample.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/bam2bcf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/abuf.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
copying bcftools/HMM.h -> build/lib.linux-s390x-cpython-311/pysam/include/bcftools
creating build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/config.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/thread_pool_internal.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/textutils_internal.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/sam_internal.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/hts_internal.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/hfile_internal.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/header.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
copying htslib/bcf_sr_sort.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib
creating build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/vcfutils.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/vcf_sweep.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/vcf.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/thread_pool.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/tbx.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/sam.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/regidx.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kstring.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/ksort.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kseq.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kroundup.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/knetfile.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/klist.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/khash_str2int.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/khash.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kfunc.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kbitset.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_os.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_log.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_expr.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_endian.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_defs.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hfile.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/faidx.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/cram.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/bgzf.h -> build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib
running build_ext
cythoning pysam/libchtslib.pyx to pysam/libchtslib.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libchtslib.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcsamtools.pyx to pysam/libcsamtools.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcsamtools.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcbcftools.pyx to pysam/libcbcftools.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcbcftools.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcutils.pyx to pysam/libcutils.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcutils.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcalignmentfile.pyx to pysam/libcalignmentfile.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcalignmentfile.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: pysam/libcalignmentfile.pyx:2573:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2578:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2583:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2622:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2627:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2632:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
cythoning pysam/libcsamfile.pyx to pysam/libcsamfile.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcsamfile.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcalignedsegment.pyx to pysam/libcalignedsegment.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcalignedsegment.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libctabix.pyx to pysam/libctabix.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libctabix.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcfaidx.pyx to pysam/libcfaidx.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcfaidx.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcbcf.pyx to pysam/libcbcf.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcbcf.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcbgzf.pyx to pysam/libcbgzf.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcbgzf.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libctabixproxies.pyx to pysam/libctabixproxies.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libctabixproxies.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcvcf.pyx to pysam/libcvcf.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcvcf.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: pysam/libcvcf.pyx:1083:27: Unreachable code
creating htslib/config_vars.h for 'pysam.libchtslib' extension
building 'pysam.libchtslib' extension
creating build/temp.linux-s390x-cpython-311
creating build/temp.linux-s390x-cpython-311/htslib
creating build/temp.linux-s390x-cpython-311/htslib/cram
creating build/temp.linux-s390x-cpython-311/htslib/htscodecs
creating build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs
creating build/temp.linux-s390x-cpython-311/pysam
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/bcf_sr_sort.c -o build/temp.linux-s390x-cpython-311/htslib/bcf_sr_sort.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/bgzf.c -o build/temp.linux-s390x-cpython-311/htslib/bgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_codecs.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_codecs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_decode.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_decode.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_encode.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_encode.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_external.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_external.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_index.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_index.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_io.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_io.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_stats.c -o build/temp.linux-s390x-cpython-311/htslib/cram/cram_stats.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/mFILE.c -o build/temp.linux-s390x-cpython-311/htslib/cram/mFILE.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/open_trace_file.c -o build/temp.linux-s390x-cpython-311/htslib/cram/open_trace_file.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/pooled_alloc.c -o build/temp.linux-s390x-cpython-311/htslib/cram/pooled_alloc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/string_alloc.c -o build/temp.linux-s390x-cpython-311/htslib/cram/string_alloc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/errmod.c -o build/temp.linux-s390x-cpython-311/htslib/errmod.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/faidx.c -o build/temp.linux-s390x-cpython-311/htslib/faidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/header.c -o build/temp.linux-s390x-cpython-311/htslib/header.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hfile.c -o build/temp.linux-s390x-cpython-311/htslib/hfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hts.c -o build/temp.linux-s390x-cpython-311/htslib/hts.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hts_expr.c -o build/temp.linux-s390x-cpython-311/htslib/hts_expr.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hts_os.c -o build/temp.linux-s390x-cpython-311/htslib/hts_os.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/arith_dynamic.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/arith_dynamic.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/fqzcomp_qual.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/fqzcomp_qual.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/htscodecs.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/htscodecs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/pack.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/pack.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/rANS_static.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/rANS_static.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/rANS_static4x16pr.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/rANS_static4x16pr.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/rle.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/rle.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/tokenise_name3.c -o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/tokenise_name3.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/kfunc.c -o build/temp.linux-s390x-cpython-311/htslib/kfunc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/kstring.c -o build/temp.linux-s390x-cpython-311/htslib/kstring.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/md5.c -o build/temp.linux-s390x-cpython-311/htslib/md5.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/multipart.c -o build/temp.linux-s390x-cpython-311/htslib/multipart.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/probaln.c -o build/temp.linux-s390x-cpython-311/htslib/probaln.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/realn.c -o build/temp.linux-s390x-cpython-311/htslib/realn.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/regidx.c -o build/temp.linux-s390x-cpython-311/htslib/regidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/region.c -o build/temp.linux-s390x-cpython-311/htslib/region.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/sam.c -o build/temp.linux-s390x-cpython-311/htslib/sam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/synced_bcf_reader.c -o build/temp.linux-s390x-cpython-311/htslib/synced_bcf_reader.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/tbx.c -o build/temp.linux-s390x-cpython-311/htslib/tbx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/textutils.c -o build/temp.linux-s390x-cpython-311/htslib/textutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/thread_pool.c -o build/temp.linux-s390x-cpython-311/htslib/thread_pool.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/vcf.c -o build/temp.linux-s390x-cpython-311/htslib/vcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/vcf_sweep.c -o build/temp.linux-s390x-cpython-311/htslib/vcf_sweep.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/vcfutils.c -o build/temp.linux-s390x-cpython-311/htslib/vcfutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/htslib_util.c -o build/temp.linux-s390x-cpython-311/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libchtslib.c -o build/temp.linux-s390x-cpython-311/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/htslib/bcf_sr_sort.o build/temp.linux-s390x-cpython-311/htslib/bgzf.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_codecs.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_decode.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_encode.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_external.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_index.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_io.o build/temp.linux-s390x-cpython-311/htslib/cram/cram_stats.o build/temp.linux-s390x-cpython-311/htslib/cram/mFILE.o build/temp.linux-s390x-cpython-311/htslib/cram/open_trace_file.o build/temp.linux-s390x-cpython-311/htslib/cram/pooled_alloc.o build/temp.linux-s390x-cpython-311/htslib/cram/string_alloc.o build/temp.linux-s390x-cpython-311/htslib/errmod.o build/temp.linux-s390x-cpython-311/htslib/faidx.o build/temp.linux-s390x-cpython-311/htslib/header.o build/temp.linux-s390x-cpython-311/htslib/hfile.o build/temp.linux-s390x-cpython-311/htslib/hts.o build/temp.linux-s390x-cpython-311/htslib/hts_expr.o build/temp.linux-s390x-cpython-311/htslib/hts_os.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/arith_dynamic.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/fqzcomp_qual.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/htscodecs.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/pack.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/rANS_static.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/rANS_static4x16pr.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/rle.o build/temp.linux-s390x-cpython-311/htslib/htscodecs/htscodecs/tokenise_name3.o build/temp.linux-s390x-cpython-311/htslib/kfunc.o build/temp.linux-s390x-cpython-311/htslib/kstring.o build/temp.linux-s390x-cpython-311/htslib/md5.o build/temp.linux-s390x-cpython-311/htslib/multipart.o build/temp.linux-s390x-cpython-311/htslib/probaln.o build/temp.linux-s390x-cpython-311/htslib/realn.o build/temp.linux-s390x-cpython-311/htslib/regidx.o build/temp.linux-s390x-cpython-311/htslib/region.o build/temp.linux-s390x-cpython-311/htslib/sam.o build/temp.linux-s390x-cpython-311/htslib/synced_bcf_reader.o build/temp.linux-s390x-cpython-311/htslib/tbx.o build/temp.linux-s390x-cpython-311/htslib/textutils.o build/temp.linux-s390x-cpython-311/htslib/thread_pool.o build/temp.linux-s390x-cpython-311/htslib/vcf.o build/temp.linux-s390x-cpython-311/htslib/vcf_sweep.o build/temp.linux-s390x-cpython-311/htslib/vcfutils.o build/temp.linux-s390x-cpython-311/pysam/htslib_util.o build/temp.linux-s390x-cpython-311/pysam/libchtslib.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -o build/lib.linux-s390x-cpython-311/pysam/libchtslib.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
building 'pysam.libcsamtools' extension
creating build/temp.linux-s390x-cpython-311/samtools
creating build/temp.linux-s390x-cpython-311/samtools/lz4
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcsamtools.c -o build/temp.linux-s390x-cpython-311/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_color.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_import.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_index.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_md.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
samtools/bam_sort.c.pysam.c: In function ‘reverse_complement.isra.0’:
samtools/bam_sort.c.pysam.c:2232:16: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
2232 | seq[j] = comp[tmp];
| ~~~~~~~^~~~~~~~~~~
samtools/bam_sort.c.pysam.c:2219:10: note: at offset 2147483647 into destination object ‘seq_’ of size 10000
2219 | char seq_[10000], *seq = seq_;
| ^~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_split.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bamtk.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bedcov.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bedidx.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/coverage.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/cut_target.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/dict.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/faidx.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/lz4/lz4.c -o build/temp.linux-s390x-cpython-311/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/padding.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/phase.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sam_view.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sample.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/samtools.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/stats.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-s390x-cpython-311/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcsamtools.o build/temp.linux-s390x-cpython-311/samtools/amplicon_stats.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam2depth.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_addrprg.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_aux.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_cat.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_color.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_consensus.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_fastq.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_flags.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_import.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_index.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_lpileup.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_markdup.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_mate.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_md.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_plbuf.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_plcmd.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_quickcheck.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_reheader.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_rmdup.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_rmdupse.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_samples.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_sort.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_split.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bam_stat.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bamshuf.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bamtk.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bedcov.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/bedidx.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/consensus_pileup.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/coverage.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/cut_target.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/dict.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/faidx.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/lz4/lz4.o build/temp.linux-s390x-cpython-311/samtools/padding.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/phase.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/sam_opts.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/sam_utils.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/sam_view.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/sample.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/samtools.pysam.o build/temp.linux-s390x-cpython-311/samtools/stats.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/stats_isize.c.pysam.o build/temp.linux-s390x-cpython-311/samtools/tmp_file.c.pysam.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcsamtools.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
samtools/bam_sort.c.pysam.c: In function ‘reverse_complement.isra’:
samtools/bam_sort.c.pysam.c:2232:16: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
2232 | seq[j] = comp[tmp];
| ^
samtools/bam_sort.c.pysam.c:2219:10: note: at offset 2147483647 into destination object ‘seq_’ of size 10000
2219 | char seq_[10000], *seq = seq_;
| ^
building 'pysam.libcbcftools' extension
creating build/temp.linux-s390x-cpython-311/bcftools
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/HMM.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/abuf.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bcftools.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bin.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/ccall.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/cols.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/consensus.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/convert.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/csq.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/dist.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/em.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/extsort.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/filter.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/hclust.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/kmin.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/main.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/mcall.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/prob1.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/regidx.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/reheader.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/tabix.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’:
bcftools/vcfmerge.c.pysam.c:749:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
749 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pysam-0.19.1/htslib/htslib/kstring.h:30,
from /builddir/build/BUILD/pysam-0.19.1/htslib/htslib/hts.h:37,
from /builddir/build/BUILD/pysam-0.19.1/htslib/htslib/vcf.h:39,
from bcftools/vcfmerge.c.pysam.c:35:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/version.c.pysam.c -o build/temp.linux-s390x-cpython-311/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcbcftools.c -o build/temp.linux-s390x-cpython-311/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/bcftools/HMM.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/abuf.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/bam2bcf.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/bam_sample.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/bcftools.pysam.o build/temp.linux-s390x-cpython-311/bcftools/bin.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/ccall.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/cols.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/consensus.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/convert.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/csq.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/dist.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/em.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/extsort.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/filter.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/gvcf.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/hclust.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/kmin.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/main.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/mcall.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/mpileup.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/ploidy.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/prob1.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/regidx.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/reheader.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/smpl_ilist.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/str_finder.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/tabix.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/tsv2vcf.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfannotate.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfbuf.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfcall.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfcnv.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfconcat.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfconvert.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcffilter.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfhead.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfindex.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfisec.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfmerge.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfnorm.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfplugin.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfquery.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfroh.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfsom.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfsort.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfstats.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcfview.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/vcmp.c.pysam.o build/temp.linux-s390x-cpython-311/bcftools/version.c.pysam.o build/temp.linux-s390x-cpython-311/pysam/libcbcftools.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcbcftools.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’:
bcftools/vcfmerge.c.pysam.c:749:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
749 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n
| ^
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
building 'pysam.libcutils' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcutils.c -o build/temp.linux-s390x-cpython-311/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/pysam_util.c -o build/temp.linux-s390x-cpython-311/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcutils.o build/temp.linux-s390x-cpython-311/pysam/pysam_util.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcsamtools.cpython-311-s390x-linux-gnu -lcbcftools.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcutils.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcalignmentfile' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcalignmentfile.c -o build/temp.linux-s390x-cpython-311/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’:
pysam/libcalignmentfile.c:28511:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
28511 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’:
pysam/libcalignmentfile.c:14228:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
14228 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcalignmentfile.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcalignmentfile.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcsamfile' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcsamfile.c -o build/temp.linux-s390x-cpython-311/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcsamfile.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcsamfile.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcalignedsegment' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcalignedsegment.c -o build/temp.linux-s390x-cpython-311/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignedsegment.c: In function ‘__pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_18fromstring’:
pysam/libcalignedsegment.c:14652:10: warning: ignoring return value of ‘sam_parse1’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
14652 | (void)(sam_parse1((&__pyx_v_line), __pyx_v_dest->header->ptr, __pyx_v_dest->_delegate));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcalignedsegment.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcalignedsegment.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libctabix' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libctabix.c -o build/temp.linux-s390x-cpython-311/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libctabix.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libctabix.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcfaidx' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcfaidx.c -o build/temp.linux-s390x-cpython-311/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcfaidx.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcfaidx.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcbcf' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcbcf.c -o build/temp.linux-s390x-cpython-311/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’:
pysam/libcbcf.c:67612:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67612 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’:
pysam/libcbcf.c:67337:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67337 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’:
pysam/libcbcf.c:72455:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72455 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’:
pysam/libcbcf.c:35431:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
35431 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c:35457:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
35457 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcbcf.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcbcf.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcbgzf' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcbgzf.c -o build/temp.linux-s390x-cpython-311/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcbgzf.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcbgzf.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libctabixproxies' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libctabixproxies.c -o build/temp.linux-s390x-cpython-311/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libctabixproxies.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libctabixproxies.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcvcf' extension
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcvcf.c -o build/temp.linux-s390x-cpython-311/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.isra.0’:
pysam/libcvcf.c:25229:16: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized]
25229 | __pyx_t_12 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 873, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcvcf.c:19949:10: note: ‘__pyx_v_qual’ was declared here
19949 | double __pyx_v_qual;
| ^~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-311/pysam/libcvcf.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-3.11/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -Lbuild/lib.linux-s390x-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-s390x-linux-gnu -lcutils.cpython-311-s390x-linux-gnu -o build/lib.linux-s390x-cpython-311/pysam/libcvcf.cpython-311-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN
++ echo /builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-cpython-311
+ PYTHONPATH=/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-s390x-cpython-311
+ sphinx-build-3 doc html
Running Sphinx v5.3.0
making output directory... done
[autosummary] generating autosummary for: api.rst, benchmarking.rst, developer.rst, faq.rst, glossary.rst, index.rst, installation.rst, release.rst, usage.rst
loading intersphinx inventory from https://docs.python.org/3.11/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.python.org/3.11/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.11/objects.inv (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x3ff8928fd90>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
reading sources... [ 11%] api
reading sources... [ 22%] benchmarking
reading sources... [ 33%] developer
reading sources... [ 44%] faq
reading sources... [ 55%] glossary
reading sources... [ 66%] index
reading sources... [ 77%] installation
reading sources... [ 88%] release
reading sources... [100%] usage
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 11%] api
writing output... [ 22%] benchmarking
writing output... [ 33%] developer
writing output... [ 44%] faq
writing output... [ 55%] glossary
writing output... [ 66%] index
writing output... [ 77%] installation
writing output... [ 88%] release
writing output... [100%] usage
generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.
The HTML pages are in html.
+ rm -rf html/.doctrees html/.buildinfo
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MsW5Nn
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x
++ dirname /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysam-0.19.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x --prefix /usr
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
# pysam: (env) CC=gcc
# pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection
# pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
checking for curl/curl.h... no
checking for curl_easy_pause in -lcurl... no
checking for curl_easy_init in -lcurl... no
configure: error: libcurl library not found
Support for HTTPS and other SSL-based URLs requires routines from the libcurl
library <http://curl.se/libcurl/>. Building HTSlib with libcurl enabled
requires libcurl development files to be installed on the build machine; you
may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on
Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions
or Cygwin) is installed.
Either configure with --disable-libcurl or resolve this error to build HTSlib.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
configure: WARNING: GCS support not enabled: requires libcurl support
configure: WARNING: S3 support not enabled: requires libcurl support
checking for library containing regcomp... none required
checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: config.h is unchanged
config.status: linking htscodecs_bundled.mk to htscodecs.mk
# pysam: htslib configure options: --disable-libcurl
# pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o
# pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm
# pysam: htslib_config PLATFORM=default
# pysam: config_option: ENABLE_GCS=0
# pysam: config_option: ENABLE_PLUGINS=0
# pysam: config_option: ENABLE_S3=0
# pysam: config_option: HAVE_COMMONCRYPTO=0
# pysam: config_option: HAVE_HMAC=0
# pysam: config_option: HAVE_LIBBZ2=1
# pysam: config_option: HAVE_LIBCURL=0
# pysam: config_option: HAVE_LIBDEFLATE=0
# pysam: config_option: HAVE_LIBLZMA=1
# pysam: config_option: HAVE_MMAP=1
running install
/usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running install_lib
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/__pycache__/version.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/__pycache__/config.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/__pycache__/samtools.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/__pycache__/Pileup.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/__pycache__/utils.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/__pycache__/__init__.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-s390x-cpython-311/pysam/libcvcf.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libctabixproxies.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbgzf.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbcf.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcfaidx.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libctabix.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcalignedsegment.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcsamfile.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcalignmentfile.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcutils.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbcftools.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcsamtools.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libchtslib.cpython-311-s390x-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcalignedsegment.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcalignmentfile.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbcf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbcftools.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbgzf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcfaidx.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libchtslib.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcsamfile.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcsamtools.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libctabix.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libctabixproxies.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcutils.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcvcf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/version.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/py.typed -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/cbcftools_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/csamtools_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/htslib_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/pysam_stream.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/pysam_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/version.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcalignedsegment.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcalignmentfile.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbcf.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcbcftools.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcfaidx.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libchtslib.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcsamfile.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcsamtools.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libctabix.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libctabixproxies.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcutils.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/libcvcf.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/bgzf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/cram.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/faidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hfile.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hts.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hts_defs.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hts_endian.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hts_expr.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hts_log.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/hts_os.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/kbitset.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/kfunc.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/khash.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/khash_str2int.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/klist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/knetfile.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/kroundup.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/kseq.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/ksort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/kstring.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/regidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/sam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/synced_bcf_reader.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/tbx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/thread_pool.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/vcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/vcf_sweep.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/htslib/vcfutils.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/bcf_sr_sort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/header.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/hfile_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/hts_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/sam_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/textutils_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/thread_pool_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-s390x-cpython-311/pysam/include/htslib/config.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/htslib
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/HMM.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/abuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/bam2bcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/bam_sample.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/bcftools.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/bcftools.pysam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/bin.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/call.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/cols.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/convert.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/dbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/dist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/extsort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/filter.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/gvcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/hclust.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/hex.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/khash_str2str.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/kheap.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/kmin.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/mw.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/ploidy.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/prob1.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/rbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/regidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/smpl_ilist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/str_finder.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/tsv2vcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/utlist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/variantkey.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/vcfbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/vcmp.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-s390x-cpython-311/pysam/include/bcftools/config.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/bcftools
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/bam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/bam_ampliconclip.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/bam_lpileup.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/bam_plbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/bedidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/consensus_pileup.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/sam_opts.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/sample.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/samtools.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/samtools.pysam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/splaysort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/stats_isize.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/tmp_file.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/samtools/config.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-s390x-cpython-311/pysam/include/__init__.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include
copying build/lib.linux-s390x-cpython-311/pysam/Pileup.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/__init__.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/bcftools.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/samtools.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/utils.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/version.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-s390x-cpython-311/pysam/config.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam
byte-compiling /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/include/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/bcftools.py to bcftools.cpython-311.pyc
writing byte-compilation script '/tmp/tmpwuzsana2.py'
/usr/bin/python3 /tmp/tmpwuzsana2.py
removing /tmp/tmpwuzsana2.py
running install_egg_info
running egg_info
creating pysam.egg-info
writing pysam.egg-info/PKG-INFO
writing dependency_links to pysam.egg-info/dependency_links.txt
writing top-level names to pysam.egg-info/top_level.txt
writing manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
no previously-included directories found matching 'tests/'
adding license file 'COPYING'
adding license file 'AUTHORS'
writing manifest file 'pysam.egg-info/SOURCES.txt'
Copying pysam.egg-info to /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam-0.19.1-py3.11.egg-info
running install_scripts
+ rm -rfv /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/bin/__pycache__
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.19.1-3.fc38 --unique-debug-suffix -0.19.1-3.fc38.s390x --unique-debug-src-base python-pysam-0.19.1-3.fc38.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/pysam-0.19.1
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcalignedsegment.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcalignmentfile.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcbcf.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcbcftools.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcbgzf.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcfaidx.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libchtslib.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcsamfile.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcsamtools.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libctabix.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libctabixproxies.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcutils.cpython-311-s390x-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11/site-packages/pysam/libcvcf.cpython-311-s390x-linux-gnu.so
original debug info size: 25524kB, size after compression: 24212kB
/usr/bin/sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match.
41871 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: python3-pysam-0.19.1-3.fc38.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.gL6ISa
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ DOCDIR=/builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/doc/python3-pysam
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/doc/python3-pysam
+ cp -pr README.rst /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/doc/python3-pysam
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.fltI6O
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ LICENSEDIR=/builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/licenses/python3-pysam
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/licenses/python3-pysam
+ cp -pr COPYING /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/licenses/python3-pysam
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(bcftools) = 1.15.1 bundled(htslib) = 1.15.1 bundled(samtools) = 1.15.1 libcalignedsegment.cpython-311-s390x-linux-gnu.so()(64bit) libcalignmentfile.cpython-311-s390x-linux-gnu.so()(64bit) libcbcf.cpython-311-s390x-linux-gnu.so()(64bit) libcbcftools.cpython-311-s390x-linux-gnu.so()(64bit) libcbgzf.cpython-311-s390x-linux-gnu.so()(64bit) libcfaidx.cpython-311-s390x-linux-gnu.so()(64bit) libchtslib.cpython-311-s390x-linux-gnu.so()(64bit) libcsamfile.cpython-311-s390x-linux-gnu.so()(64bit) libcsamtools.cpython-311-s390x-linux-gnu.so()(64bit) libctabix.cpython-311-s390x-linux-gnu.so()(64bit) libctabixproxies.cpython-311-s390x-linux-gnu.so()(64bit) libcutils.cpython-311-s390x-linux-gnu.so()(64bit) libcvcf.cpython-311-s390x-linux-gnu.so()(64bit) python-pysam = 0.19.1-3.fc38 python3-pysam = 0.19.1-3.fc38 python3-pysam(s390-64) = 0.19.1-3.fc38 python3.11-pysam = 0.19.1-3.fc38 python3.11dist(pysam) = 0.19.1 python3dist(pysam) = 0.19.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcbcftools.cpython-311-s390x-linux-gnu.so()(64bit) libchtslib.cpython-311-s390x-linux-gnu.so()(64bit) libcsamtools.cpython-311-s390x-linux-gnu.so()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.4)(64bit) libz.so.1()(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Obsoletes: python-pysam < 0.19.1-3.fc38
Processing files: python3-pysam-devel-0.19.1-3.fc38.s390x
Provides: python-pysam-devel = 0.19.1-3.fc38 python3-pysam-devel = 0.19.1-3.fc38 python3-pysam-devel(s390-64) = 0.19.1-3.fc38 python3.11-pysam-devel = 0.19.1-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11
Processing files: python-pysam-doc-0.19.1-3.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.eYHJHW
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ DOCDIR=/builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/doc/python-pysam-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/doc/python-pysam-doc
+ cp -pr html /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x/usr/share/doc/python-pysam-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-pysam-doc = 0.19.1-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python-pysam-debugsource-0.19.1-3.fc38.s390x
Provides: python-pysam-debugsource = 0.19.1-3.fc38 python-pysam-debugsource(s390-64) = 0.19.1-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-pysam-debuginfo-0.19.1-3.fc38.s390x
Provides: debuginfo(build-id) = 06c741edfa1a01b93b70beb7fb0c7e063b39b009 debuginfo(build-id) = 200e4a135e7dfa533e87c8fb52e90d5f3fbb5a39 debuginfo(build-id) = 330fc791a1dca14122703593ddbd8b01aa76ea2a debuginfo(build-id) = 3933cb29f43d04492d1bac75555d143ba221f533 debuginfo(build-id) = 597e4900f6ba1a4fe321aedc5d60ede0cf0049d1 debuginfo(build-id) = 87365c5c733e8c30933dd175275ea4df7f62e9a3 debuginfo(build-id) = 917afdd2f41fea78f6e044e7dff8e2ecf19fdba9 debuginfo(build-id) = adf302a13b62620c355d4a7f26b4d779bff7f0be debuginfo(build-id) = b38d6e5ac9090c10321ed195449382bd5661a512 debuginfo(build-id) = bb96d816755ca1af006a962b5a23e87537efff4f debuginfo(build-id) = d95f8485eb00e8e487181c8eaa78bee133b2f62a debuginfo(build-id) = d9a0499c4dc54a3abce9e377e818f0b1e35546ed debuginfo(build-id) = f9612417d32486c469028720019cf0125b98e900 libcalignedsegment.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcalignmentfile.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcbcf.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcbcftools.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcbgzf.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcfaidx.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libchtslib.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcsamfile.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcsamtools.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libctabix.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libctabixproxies.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcutils.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) libcvcf.cpython-311-s390x-linux-gnu.so-0.19.1-3.fc38.s390x.debug()(64bit) python-pysam-debuginfo = 0.19.1-3.fc38 python3-pysam-debuginfo = 0.19.1-3.fc38 python3-pysam-debuginfo(s390-64) = 0.19.1-3.fc38 python3.11-pysam-debuginfo = 0.19.1-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-pysam-debugsource(s390-64) = 0.19.1-3.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x
Wrote: /builddir/build/RPMS/python3-pysam-debuginfo-0.19.1-3.fc38.s390x.rpm
Wrote: /builddir/build/RPMS/python-pysam-debugsource-0.19.1-3.fc38.s390x.rpm
Wrote: /builddir/build/RPMS/python3-pysam-0.19.1-3.fc38.s390x.rpm
Wrote: /builddir/build/RPMS/python3-pysam-devel-0.19.1-3.fc38.s390x.rpm
Wrote: /builddir/build/RPMS/python-pysam-doc-0.19.1-3.fc38.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.KV45Z3
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc38.s390x
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Jg2tLh
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pysam-0.19.1 pysam-0.19.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild python-pysam-0.19.1-3.fc38.src.rpm
Finish: build phase for python-pysam-0.19.1-3.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1672095339.867032/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/python-pysam-0.19.1-3.fc38.src.rpm) Config(child) 5 minutes 58 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool