Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/smoldyn.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1672332333.752206/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f70ea41f4d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.09jfbp1v:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.09jfbp1v:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9621695d6d3644589430413ca010c8bd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1672332333.752206/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.09jfbp1v:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/smoldyn.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658534400
Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-3.fc38.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/smoldyn.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1672332333.752206/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f70ea41f4d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.09jfbp1v:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.09jfbp1v:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd53af05a706f4309b6da55563753c511', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1672332333.752206/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.09jfbp1v:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/smoldyn.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658534400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dnumg2
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf Smoldyn-2.67.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd Smoldyn-2.67.3
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (smoldyn-fix_libpaths.patch):'
Patch #0 (smoldyn-fix_libpaths.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 253 (offset 44 lines).
Hunk #2 succeeded at 269 (offset 44 lines).
Hunk #3 succeeded at 433 (offset 44 lines).
Hunk #4 succeeded at 510 (offset 47 lines).
Patch #1 (smoldyn-freeglut.patch):
+ echo 'Patch #1 (smoldyn-freeglut.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 365 (offset 39 lines).
+ echo 'Patch #2 (smoldyn-create_soname.patch):'
Patch #2 (smoldyn-create_soname.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0
patching file CMakeLists.txt
Hunk #2 succeeded at 517 (offset 47 lines).
+ echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):'
Patch #3 (smoldyn-avoid_automatic_wheel.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0
patching file source/python/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -3 lines).
Patch #4 (smoldyn-bug121.patch):
+ echo 'Patch #4 (smoldyn-bug121.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0
patching file tests/test_api.py
Patch #5 (smoldyn-bug123.patch):
+ echo 'Patch #5 (smoldyn-bug123.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0
patching file tests/test_api.py
+ rm -rf source/MSVClibs
+ rm -rf source/pybind11
+ rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake
+ rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen
+ rm -rf source/NextSubVolume/boost_include
+ rm -f 'source/vtk/*'
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.c' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';'
+ sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
+ cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt
+ cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt
+ find -name '*.pyc' -delete
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BeLlPe
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.67.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF
-- The CXX compiler identification is GNU 13.0.0
-- The C compiler identification is GNU 13.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Smoldyn version is set to: '2.67.3'
-- Compiling for Smoldyn: ON
-- Compiling for Libsmoldyn: ON
-- Option to compile Smoldyn for VCell: OFF
-- Option to cross-compile for Windows using MinGW: OFF
-- Option to include NextSubvolume: ON
-- Option to include VTK: OFF
-- Option to compile with static libraries: OFF
-- Option to include OpenGL support: ON
-- Option to include LibTiff: ON
-- Option to include Zlib: ON
-- Option to incude Python module: ON
-- Option to run Libsmoldyn examples: OFF
-- Option to build documentation: OFF
-- Performing Test C_FLAG_EXISTS
-- Performing Test C_FLAG_EXISTS - Success
-- Performing Test CXX_FLAG_EXISTS
-- Performing Test CXX_FLAG_EXISTS - Success
-- [COMPILER] Adding -Wno-unused-parameter
-- Build type: Release
-- Compiling on a Linux computer
-- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
-- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' 
-- Found OpenGL: /usr/lib64/libOpenGL.so   
-- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so'
-- Found GLUT: /usr/lib64/libglut.so  
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0")  
-- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so'
-- Found Zlib: '/usr/include', '/usr/lib64/libz.so'
-- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include'
-- Found Python3: /usr/bin/python3.11 (found version "3.11.1") found components: Interpreter Development Development.Module Development.Embed 
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.10.1")
-- [TEST] Found 15 test scripts
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0
make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks
make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f CMakeFiles/Makefile2 all
/usr/bin/make  -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend
/usr/bin/make  -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 29%] Built target Steve
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp
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/usr/bin/make  -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color=
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[ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17,
                 from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 33%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17,
                 from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17,
                 from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c
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[ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c
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[ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c
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[ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c
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[ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c
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[ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c
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/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o  /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so 
/usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr]
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv'
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod'
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
  137 | class NextSubvolumeMethod
      |       ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color=
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/usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG   -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c
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[ 85%] Linking CXX executable smoldyn
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn  libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so 
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 86%] Built target smoldyn
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[ 87%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 88%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 86%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu++14 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15,
                 from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27:
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes]
   20 | class CallbackFunc
      |       ^~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes]
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 90%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu++14 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15,
                 from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15:
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes]
   20 | class CallbackFunc
      |       ^~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes]
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 91%] Linking CXX static library lib_pysmoldyn.a
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1
/usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
/usr/bin/ranlib lib_pysmoldyn.a
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[ 91%] Built target _pysmoldyn
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared  -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o  lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so 
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr]
 1044 | typedef struct simstruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit
 1044 | typedef struct simstruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks'
 1104 |     CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback.
      |                   ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit
 1044 | typedef struct simstruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr]
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv'
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod'
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
  137 | class NextSubvolumeMethod
      |       ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 97%] Built target _smoldyn
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
/usr/bin/make  -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 98%] Copying python source tree to binary directory
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Built target copy_python_tree
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-311
creating build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn
creating build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn
running build_ext
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn
creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn
running install_egg_info
running egg_info
creating smoldyn.egg-info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL
creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.67.3.dist-info/METADATA'
adding 'smoldyn-2.67.3.dist-info/WHEEL'
adding 'smoldyn-2.67.3.dist-info/top_level.txt'
adding 'smoldyn-2.67.3.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Built target wheel
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0
make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.rFy4Rp
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.67.3
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 19%] Built target Steve
/usr/bin/make  -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 29%] Built target nsv
/usr/bin/make  -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 49%] Built target smoldyn_static
/usr/bin/make  -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 69%] Built target smoldyn_shared
/usr/bin/make  -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 71%] Built target smoldyn
/usr/bin/make  -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 91%] Built target _pysmoldyn
/usr/bin/make  -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 97%] Built target _smoldyn
/usr/bin/make  -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 98%] Copying python source tree to binary directory
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 98%] Built target copy_python_tree
/usr/bin/make  -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make  -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build
running bdist_wheel
running build
running build_py
copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn
running build_ext
/usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn
creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
running install_egg_info
running egg_info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL
creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.67.3.dist-info/METADATA'
adding 'smoldyn-2.67.3.dist-info/WHEEL'
adding 'smoldyn-2.67.3.dist-info/top_level.txt'
adding 'smoldyn-2.67.3.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Built target wheel
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/bin/smoldyn
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_static.a
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/libsmoldyn.h
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/smoldyn.h
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/smoldynconfigure.h
make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
+ pushd build/py
~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3
+ mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages
+ cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages/
+ popd
~/build/BUILD/Smoldyn-2.67.3
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-3.fc38 --unique-debug-suffix -2.67.3-3.fc38.x86_64 --unique-debug-src-base smoldyn-2.67.3-3.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3
extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3
extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/bin/smoldyn
original debug info size: 4988kB, size after compression: 4584kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
3516 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.25nIJg
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.67.3
+ cd build
+ export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64
+ export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages
+ xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:420 Here: 420
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:705 UpdateCTestConfiguration  from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:432 Here: 432
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:3014 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:3019 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:3039 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:705 UpdateCTestConfiguration  from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:402 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:1782 Constructing a list of tests
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_actions
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_api
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_biosimulators
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_concurrent_simulation
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_connect_func
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_connect_var
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_data_in_array
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_data_outputfile
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_getters
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_issue_118
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_libsmoldyn
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_multiple_iterations
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_prd_placement
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_sanity
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_sim_from_file
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:1833 Done constructing a list of tests
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:977 Updating test list for fixtures
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:1200 Added 0 tests to meet fixture requirements
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestMultiProcessHandler.cxx:1412 Checking test dependency graph...
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestMultiProcessHandler.cxx:1441 Checking test dependency graph end
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 2
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:518     Start  2: test_api
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:687 
2: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py"
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:708 2:  PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:708 2:  SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:777 2: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:949 1/3 Test  #2: test_api .........................
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:952 Testing test_api ... 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:255    Passed    0.19 sec
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 3
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:518     Start  3: test_biosimulators
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:687 
3: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py"
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:708 3:  PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:708 3:  SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:777 3: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 3: ssssssssssssssssssssssss
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 3: ----------------------------------------------------------------------
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 3: Ran 24 tests in 0.000s
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 3: 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 3: OK (skipped=24)
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:949 2/3 Test  #3: test_biosimulators ...............
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:952 Testing test_biosimulators ... 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:255    Passed    0.21 sec
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 14
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:518     Start 14: test_sanity
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:687 
14: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py"
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:708 14:  PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:708 14:  SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:777 14: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 14: test_newcursim
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 14: <smoldyn._smoldyn.simstruct object at 0x7fa6992c22b0>
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 14: Testing test_get_err
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:42 14: (<ErrorCode.ok: 0>, '')
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:949 3/3 Test #14: test_sanity ......................
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:952 Testing test_sanity ... 
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestRunTest.cxx:255    Passed    0.16 sec
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/cmCTest.cxx:306    Current_Time: Dec 29 16:49 UTC
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:441 
The following tests passed:
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:446 	test_api
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:446 	test_biosimulators
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:446 	test_sanity
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:606 
100% tests passed, 0 tests failed out of 3
/builddir/build/BUILD/cmake-3.25.1/Source/CTest/cmCTestTestHandler.cxx:622 
Total Test time (real) =   0.56 sec
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: smoldyn-2.67.3-3.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lnzDmp
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn
+ cp -pr Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn
+ cp -pr README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-3.fc38 smoldyn(x86-64) = 2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-doc-2.67.3-3.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.F4NvA7
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr docs/BioNetGen docs/CMakeLists.txt docs/Doxyfile.in docs/README.md docs/SmolCrowd docs/SmolEmulate docs/Smoldyn docs/_static docs/build_doxygen docs/conf.py docs/doxygen docs/examples docs/index.rst docs/libSteve docs/python docs/requirements.txt docs/tikz docs/user docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: smoldyn-doc = 2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-libs-2.67.3-3.fc38.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.DhvWZ5
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs
+ cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs
+ cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs
+ cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-3.fc38 smoldyn-libs(x86-64) = 2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-libs-devel-2.67.3-3.fc38.x86_64
Provides: smoldyn-libs-devel = 2.67.3-3.fc38 smoldyn-libs-devel(x86-64) = 2.67.3-3.fc38 smoldyn-libs-static = 0:2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsmoldyn_shared.so.2()(64bit)
Processing files: python3-smoldyn-2.67.3-3.fc38.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.uOFEf3
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn
+ cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn
+ cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn
+ cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-smoldyn = 2.67.3-3.fc38 python3-smoldyn = 2.67.3-3.fc38 python3-smoldyn(x86-64) = 2.67.3-3.fc38 python3.11-smoldyn = 2.67.3-3.fc38 python3.11dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Obsoletes: python-smoldyn < 2.67.3-3.fc38
Processing files: smoldyn-debugsource-2.67.3-3.fc38.x86_64
Provides: smoldyn-debugsource = 2.67.3-3.fc38 smoldyn-debugsource(x86-64) = 2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-debuginfo-2.67.3-3.fc38.x86_64
Provides: debuginfo(build-id) = ab6e201c1205d66b7078569e50533710cb359362 smoldyn-debuginfo = 2.67.3-3.fc38 smoldyn-debuginfo(x86-64) = 2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.67.3-3.fc38
Processing files: smoldyn-libs-debuginfo-2.67.3-3.fc38.x86_64
Provides: debuginfo(build-id) = 1e9b34fc9609c565bfcf0de9382335b9ac38c80a libsmoldyn_shared.so.2.67.3-2.67.3-3.fc38.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-3.fc38 smoldyn-libs-debuginfo(x86-64) = 2.67.3-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.67.3-3.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64
Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-2.67.3-3.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-3.fc38.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.McF9AT
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.DboGYF
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0