Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c109' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4732582 --chroot fedora-rawhide-i386 --detached
Version: 0.61
PID: 5146
Logging PID: 5147
Task:
{'appstream': True,
 'background': False,
 'bootstrap': 'off',
 'build_id': 4732582,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '1301338c7b4476be39b3b5b3487d99444b3406a9',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-5.fc38',
 'project_dirname': 'staging',
 'project_name': 'staging',
 'project_owner': 'jaruga',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jaruga/staging/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository'}],
 'sandbox': 'jaruga/staging--jaruga',
 'source_json': {},
 'source_type': None,
 'submitter': 'jaruga',
 'tags': [],
 'task_id': '4732582-fedora-rawhide-i386',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/mmseq /var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq'...

Running: git checkout 1301338c7b4476be39b3b5b3487d99444b3406a9

cmd: ['git', 'checkout', '1301338c7b4476be39b3b5b3487d99444b3406a9']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq
rc: 0
stdout: 
stderr: Note: switching to '1301338c7b4476be39b3b5b3487d99444b3406a9'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 1301338 automatic import of mmseq

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jaruga/staging/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  24.7M      0 --:--:-- --:--:-- --:--:-- 24.9M
INFO: Reading stdout from command: md5sum 1.0.11.zip

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660558475.626399 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq/mmseq.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1660558475.626399/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 195 kB/s |  18 kB     00:00    
local                                            64 MB/s |  60 MB     00:00    
Dependencies resolved.
================================================================================
 Package                       Arch   Version                       Repo   Size
================================================================================
Installing group/module packages:
 bash                          i686   5.1.16-3.fc37                 local 1.7 M
 bzip2                         i686   1.0.8-12.fc37                 local  53 k
 coreutils                     i686   9.1-6.fc37                    local 1.1 M
 cpio                          i686   2.13-13.fc37                  local 274 k
 diffutils                     i686   3.8-3.fc37                    local 375 k
 fedora-release                noarch 38-0.2                        local  12 k
 findutils                     i686   1:4.9.0-2.fc37                local 492 k
 gawk                          i686   5.1.1-4.fc37                  local 1.0 M
 glibc-minimal-langpack        i686   2.36-1.fc37                   local  81 k
 grep                          i686   3.7-4.fc37                    local 269 k
 gzip                          i686   1.12-2.fc37                   local 157 k
 info                          i686   6.8-4.fc37                    local 229 k
 make                          i686   1:4.3-11.fc37                 local 540 k
 patch                         i686   2.7.6-17.fc37                 local 137 k
 redhat-rpm-config             noarch 227-1.fc37                    local  73 k
 rpm-build                     i686   4.18.0-0.beta1.4.fc37         local  69 k
 sed                           i686   4.8-11.fc37                   local 300 k
 shadow-utils                  i686   2:4.11.1-4.fc37               local 1.1 M
 tar                           i686   2:1.34-3.fc36                 local 893 k
 unzip                         i686   6.0-58.fc37                   local 178 k
 util-linux                    i686   2.38.1-1.fc37                 local 2.3 M
 which                         i686   2.21-35.fc37                  local  42 k
 xz                            i686   5.2.5-10.fc37                 local 219 k
Installing dependencies:
 alternatives                  i686   1.19-3.fc37                   local  37 k
 ansible-srpm-macros           noarch 1-6.fc37                      local 7.5 k
 audit-libs                    i686   3.0.8-3.fc37                  local 122 k
 authselect                    i686   1.4.0-3.fc37                  local 141 k
 authselect-libs               i686   1.4.0-3.fc37                  local 238 k
 basesystem                    noarch 11-14.fc37                    local 7.0 k
 binutils                      i686   2.38-24.fc38                  local 5.6 M
 binutils-gold                 i686   2.38-24.fc38                  local 841 k
 bzip2-libs                    i686   1.0.8-12.fc37                 local  41 k
 ca-certificates               noarch 2022.2.54-5.fc37              local 829 k
 coreutils-common              i686   9.1-6.fc37                    local 2.0 M
 cracklib                      i686   2.9.6-28.fc36                 local  82 k
 crypto-policies               noarch 20220815-1.gite4ed860.fc38    local  60 k
 curl                          i686   7.84.0-2.fc37                 local 315 k
 cyrus-sasl-lib                i686   2.1.28-7.fc37                 local 857 k
 debugedit                     i686   5.0-5.fc37                    local  78 k
 dwz                           i686   0.14-7.fc37                   local 133 k
 ed                            i686   1.18-2.fc37                   local  78 k
 efi-srpm-macros               noarch 5-6.fc37                      local  22 k
 elfutils                      i686   0.187-6.fc37                  local 539 k
 elfutils-debuginfod-client    i686   0.187-6.fc37                  local  40 k
 elfutils-default-yama-scope   noarch 0.187-6.fc37                  local  17 k
 elfutils-libelf               i686   0.187-6.fc37                  local 203 k
 elfutils-libs                 i686   0.187-6.fc37                  local 287 k
 fedora-gpg-keys               noarch 38-0.2                        local 115 k
 fedora-release-common         noarch 38-0.2                        local  22 k
 fedora-release-identity-basic noarch 38-0.2                        local  12 k
 fedora-repos                  noarch 38-0.2                        local  10 k
 fedora-repos-rawhide          noarch 38-0.2                        local 9.6 k
 file                          i686   5.42-4.fc37                   local  49 k
 file-libs                     i686   5.42-4.fc37                   local 684 k
 filesystem                    i686   3.18-2.fc37                   local 1.1 M
 fonts-srpm-macros             noarch 1:2.0.5-8.fc37                local  26 k
 fpc-srpm-macros               noarch 1.3-6.fc37                    local 7.7 k
 gc                            i686   8.0.6-4.fc37                  local 105 k
 gdb-minimal                   i686   12.1-4.fc37                   local 4.2 M
 gdbm-libs                     i686   1:1.23-2.fc37                 local  60 k
 ghc-srpm-macros               noarch 1.5.0-7.fc37                  local 7.8 k
 glibc                         i686   2.36-1.fc37                   local 1.9 M
 glibc-common                  i686   2.36-1.fc37                   local 367 k
 glibc-gconv-extra             i686   2.36-1.fc37                   local 1.6 M
 gmp                           i686   1:6.2.1-3.fc37                local 305 k
 gnat-srpm-macros              noarch 4-16.fc37                     local 8.3 k
 go-srpm-macros                noarch 3.1.0-4.fc37                  local  27 k
 guile22                       i686   2.2.7-6.fc37                  local 6.5 M
 jansson                       i686   2.13.1-5.fc37                 local  46 k
 kernel-srpm-macros            noarch 1.0-15.fc37                   local 9.4 k
 keyutils-libs                 i686   1.6.1-5.fc37                  local  32 k
 krb5-libs                     i686   1.19.2-11.fc37.1              local 768 k
 libacl                        i686   2.3.1-4.fc37                  local  25 k
 libarchive                    i686   3.6.1-2.fc37                  local 443 k
 libattr                       i686   2.5.1-5.fc37                  local  18 k
 libblkid                      i686   2.38.1-1.fc37                 local 117 k
 libbrotli                     i686   1.0.9-9.fc37                  local 317 k
 libcap                        i686   2.48-5.fc37                   local  68 k
 libcap-ng                     i686   0.8.3-3.fc37                  local  33 k
 libcom_err                    i686   1.46.5-3.fc37                 local  26 k
 libcurl                       i686   7.84.0-2.fc37                 local 332 k
 libdb                         i686   5.3.28-53.fc37                local 824 k
 libeconf                      i686   0.4.0-4.fc37                  local  29 k
 libevent                      i686   2.1.12-7.fc37                 local 279 k
 libfdisk                      i686   2.38.1-1.fc37                 local 174 k
 libffi                        i686   3.4.2-9.fc37                  local  36 k
 libgcc                        i686   12.1.1-4.fc38                 local 116 k
 libgomp                       i686   12.1.1-4.fc38                 local 300 k
 libidn2                       i686   2.3.3-2.fc37                  local 108 k
 libmount                      i686   2.38.1-1.fc37                 local 141 k
 libnghttp2                    i686   1.48.0-2.fc37                 local  80 k
 libnsl2                       i686   2.0.0-4.fc37                  local  31 k
 libpkgconf                    i686   1.8.0-3.fc37                  local  38 k
 libpsl                        i686   0.21.1-6.fc37                 local  64 k
 libpwquality                  i686   1.4.4-11.fc37                 local 106 k
 libselinux                    i686   3.4-5.fc37                    local  91 k
 libsemanage                   i686   3.4-5.fc37                    local 129 k
 libsepol                      i686   3.4-3.fc37                    local 335 k
 libsigsegv                    i686   2.14-3.fc37                   local  27 k
 libsmartcols                  i686   2.38.1-1.fc37                 local  66 k
 libssh                        i686   0.9.6-5.fc37                  local 216 k
 libssh-config                 noarch 0.9.6-5.fc37                  local 7.8 k
 libstdc++                     i686   12.1.1-4.fc38                 local 850 k
 libtasn1                      i686   4.18.0-3.fc37                 local  76 k
 libtirpc                      i686   1.3.3-0.fc37                  local 101 k
 libtool-ltdl                  i686   2.4.7-2.fc37                  local  39 k
 libunistring                  i686   1.0-2.fc37                    local 551 k
 libutempter                   i686   1.2.1-7.fc37                  local  26 k
 libuuid                       i686   2.38.1-1.fc37                 local  29 k
 libverto                      i686   0.3.2-4.fc37                  local  21 k
 libxcrypt                     i686   4.4.28-3.fc38                 local 123 k
 libxml2                       i686   2.9.14-3.fc37                 local 787 k
 libzstd                       i686   1.5.2-3.fc37                  local 274 k
 lua-libs                      i686   5.4.4-4.fc37                  local 243 k
 lua-srpm-macros               noarch 1-7.fc37                      local 8.8 k
 lz4-libs                      i686   1.9.3-5.fc37                  local  72 k
 mpfr                          i686   4.1.0-10.fc37                 local 371 k
 ncurses-base                  noarch 6.3-3.20220501.fc37           local  61 k
 ncurses-libs                  i686   6.3-3.20220501.fc37           local 347 k
 nim-srpm-macros               noarch 3-7.fc37                      local 8.4 k
 ocaml-srpm-macros             noarch 7-2.fc37                      local  13 k
 openblas-srpm-macros          noarch 2-12.fc37                     local 7.5 k
 openldap                      i686   2.6.2-5.fc38                  local 273 k
 openssl-libs                  i686   1:3.0.5-2.fc37                local 2.1 M
 p11-kit                       i686   0.24.1-3.fc37                 local 337 k
 p11-kit-trust                 i686   0.24.1-3.fc37                 local 138 k
 package-notes-srpm-macros     noarch 0.4-16.fc37                   local  11 k
 pam                           i686   1.5.2-14.fc37                 local 536 k
 pam-libs                      i686   1.5.2-14.fc37                 local  61 k
 pcre                          i686   8.45-1.fc37.2                 local 199 k
 pcre2                         i686   10.40-1.fc37.1                local 234 k
 pcre2-syntax                  noarch 10.40-1.fc37.1                local 142 k
 perl-srpm-macros              noarch 1-46.fc37                     local 8.3 k
 pkgconf                       i686   1.8.0-3.fc37                  local  42 k
 pkgconf-m4                    noarch 1.8.0-3.fc37                  local  14 k
 pkgconf-pkg-config            i686   1.8.0-3.fc37                  local  10 k
 popt                          i686   1.19~rc1-3.fc37               local  61 k
 publicsuffix-list-dafsa       noarch 20210518-5.fc37               local  58 k
 python-srpm-macros            noarch 3.11-4.fc37                   local  25 k
 qt5-srpm-macros               noarch 5.15.5-2.fc37                 local 8.1 k
 readline                      i686   8.1-7.fc37                    local 217 k
 rpm                           i686   4.18.0-0.beta1.4.fc37         local 541 k
 rpm-build-libs                i686   4.18.0-0.beta1.4.fc37         local 101 k
 rpm-libs                      i686   4.18.0-0.beta1.4.fc37         local 350 k
 rpmautospec-rpm-macros        noarch 0.3.0-1.fc37                  local 8.8 k
 rust-srpm-macros              noarch 22-1.fc37                     local 9.5 k
 setup                         noarch 2.14.1-2.fc37                 local 143 k
 sqlite-libs                   i686   3.39.2-2.fc37                 local 702 k
 systemd-libs                  i686   251.4-51.fc37                 local 650 k
 tzdata                        noarch 2022b-1.fc38                  local 432 k
 util-linux-core               i686   2.38.1-1.fc37                 local 468 k
 xxhash-libs                   i686   0.8.1-3.fc37                  local  59 k
 xz-libs                       i686   5.2.5-10.fc37                 local  99 k
 zip                           i686   3.0-33.fc37                   local 264 k
 zlib                          i686   1.2.12-4.fc37                 local  92 k
 zstd                          i686   1.5.2-3.fc37                  local 418 k
Installing Groups:
 build                                                                         

Transaction Summary
================================================================================
Install  156 Packages

Total download size: 59 M
Installed size: 217 M
Downloading Packages:
(1/156): ansible-srpm-macros-1-6.fc37.noarch.rp 163 kB/s | 7.5 kB     00:00    
(2/156): alternatives-1.19-3.fc37.i686.rpm      714 kB/s |  37 kB     00:00    
(3/156): authselect-1.4.0-3.fc37.i686.rpm       4.4 MB/s | 141 kB     00:00    
(4/156): audit-libs-3.0.8-3.fc37.i686.rpm       1.5 MB/s | 122 kB     00:00    
(5/156): authselect-libs-1.4.0-3.fc37.i686.rpm  7.5 MB/s | 238 kB     00:00    
(6/156): basesystem-11-14.fc37.noarch.rpm       629 kB/s | 7.0 kB     00:00    
(7/156): binutils-gold-2.38-24.fc38.i686.rpm     17 MB/s | 841 kB     00:00    
(8/156): bash-5.1.16-3.fc37.i686.rpm             24 MB/s | 1.7 MB     00:00    
(9/156): bzip2-1.0.8-12.fc37.i686.rpm           2.8 MB/s |  53 kB     00:00    
(10/156): bzip2-libs-1.0.8-12.fc37.i686.rpm     2.5 MB/s |  41 kB     00:00    
(11/156): ca-certificates-2022.2.54-5.fc37.noar  30 MB/s | 829 kB     00:00    
(12/156): binutils-2.38-24.fc38.i686.rpm         48 MB/s | 5.6 MB     00:00    
(13/156): coreutils-9.1-6.fc37.i686.rpm          27 MB/s | 1.1 MB     00:00    
(14/156): cpio-2.13-13.fc37.i686.rpm             16 MB/s | 274 kB     00:00    
(15/156): cracklib-2.9.6-28.fc36.i686.rpm       6.0 MB/s |  82 kB     00:00    
(16/156): crypto-policies-20220815-1.gite4ed860 4.7 MB/s |  60 kB     00:00    
(17/156): coreutils-common-9.1-6.fc37.i686.rpm   41 MB/s | 2.0 MB     00:00    
(18/156): curl-7.84.0-2.fc37.i686.rpm            19 MB/s | 315 kB     00:00    
(19/156): debugedit-5.0-5.fc37.i686.rpm         6.3 MB/s |  78 kB     00:00    
(20/156): cyrus-sasl-lib-2.1.28-7.fc37.i686.rpm  36 MB/s | 857 kB     00:00    
(21/156): diffutils-3.8-3.fc37.i686.rpm          22 MB/s | 375 kB     00:00    
(22/156): dwz-0.14-7.fc37.i686.rpm               10 MB/s | 133 kB     00:00    
(23/156): ed-1.18-2.fc37.i686.rpm               6.2 MB/s |  78 kB     00:00    
(24/156): efi-srpm-macros-5-6.fc37.noarch.rpm   2.0 MB/s |  22 kB     00:00    
(25/156): elfutils-0.187-6.fc37.i686.rpm         29 MB/s | 539 kB     00:00    
(26/156): elfutils-default-yama-scope-0.187-6.f 1.4 MB/s |  17 kB     00:00    
(27/156): elfutils-debuginfod-client-0.187-6.fc 2.5 MB/s |  40 kB     00:00    
(28/156): elfutils-libelf-0.187-6.fc37.i686.rpm  14 MB/s | 203 kB     00:00    
(29/156): fedora-gpg-keys-38-0.2.noarch.rpm     8.4 MB/s | 115 kB     00:00    
(30/156): elfutils-libs-0.187-6.fc37.i686.rpm    17 MB/s | 287 kB     00:00    
(31/156): fedora-release-38-0.2.noarch.rpm      1.0 MB/s |  12 kB     00:00    
(32/156): fedora-release-common-38-0.2.noarch.r 1.9 MB/s |  22 kB     00:00    
(33/156): fedora-release-identity-basic-38-0.2. 965 kB/s |  12 kB     00:00    
(34/156): fedora-repos-38-0.2.noarch.rpm        937 kB/s |  10 kB     00:00    
(35/156): fedora-repos-rawhide-38-0.2.noarch.rp 886 kB/s | 9.6 kB     00:00    
(36/156): file-5.42-4.fc37.i686.rpm             4.2 MB/s |  49 kB     00:00    
(37/156): file-libs-5.42-4.fc37.i686.rpm         28 MB/s | 684 kB     00:00    
(38/156): findutils-4.9.0-2.fc37.i686.rpm        18 MB/s | 492 kB     00:00    
(39/156): filesystem-3.18-2.fc37.i686.rpm        33 MB/s | 1.1 MB     00:00    
(40/156): fonts-srpm-macros-2.0.5-8.fc37.noarch 2.1 MB/s |  26 kB     00:00    
(41/156): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 699 kB/s | 7.7 kB     00:00    
(42/156): gc-8.0.6-4.fc37.i686.rpm              8.1 MB/s | 105 kB     00:00    
(43/156): gawk-5.1.1-4.fc37.i686.rpm             39 MB/s | 1.0 MB     00:00    
(44/156): gdbm-libs-1.23-2.fc37.i686.rpm        2.6 MB/s |  60 kB     00:00    
(45/156): ghc-srpm-macros-1.5.0-7.fc37.noarch.r 623 kB/s | 7.8 kB     00:00    
(46/156): glibc-common-2.36-1.fc37.i686.rpm      18 MB/s | 367 kB     00:00    
(47/156): glibc-2.36-1.fc37.i686.rpm             39 MB/s | 1.9 MB     00:00    
(48/156): gdb-minimal-12.1-4.fc37.i686.rpm       48 MB/s | 4.2 MB     00:00    
(49/156): glibc-minimal-langpack-2.36-1.fc37.i6 5.2 MB/s |  81 kB     00:00    
(50/156): glibc-gconv-extra-2.36-1.fc37.i686.rp  33 MB/s | 1.6 MB     00:00    
(51/156): gmp-6.2.1-3.fc37.i686.rpm              19 MB/s | 305 kB     00:00    
(52/156): gnat-srpm-macros-4-16.fc37.noarch.rpm 775 kB/s | 8.3 kB     00:00    
(53/156): go-srpm-macros-3.1.0-4.fc37.noarch.rp 2.3 MB/s |  27 kB     00:00    
(54/156): grep-3.7-4.fc37.i686.rpm               17 MB/s | 269 kB     00:00    
(55/156): gzip-1.12-2.fc37.i686.rpm              11 MB/s | 157 kB     00:00    
(56/156): info-6.8-4.fc37.i686.rpm               14 MB/s | 229 kB     00:00    
(57/156): jansson-2.13.1-5.fc37.i686.rpm        3.2 MB/s |  46 kB     00:00    
(58/156): kernel-srpm-macros-1.0-15.fc37.noarch 847 kB/s | 9.4 kB     00:00    
(59/156): keyutils-libs-1.6.1-5.fc37.i686.rpm   2.5 MB/s |  32 kB     00:00    
(60/156): libacl-2.3.1-4.fc37.i686.rpm          1.9 MB/s |  25 kB     00:00    
(61/156): krb5-libs-1.19.2-11.fc37.1.i686.rpm    34 MB/s | 768 kB     00:00    
(62/156): libarchive-3.6.1-2.fc37.i686.rpm       20 MB/s | 443 kB     00:00    
(63/156): libattr-2.5.1-5.fc37.i686.rpm         1.1 MB/s |  18 kB     00:00    
(64/156): libblkid-2.38.1-1.fc37.i686.rpm       6.9 MB/s | 117 kB     00:00    
(65/156): guile22-2.2.7-6.fc37.i686.rpm          60 MB/s | 6.5 MB     00:00    
(66/156): libbrotli-1.0.9-9.fc37.i686.rpm        12 MB/s | 317 kB     00:00    
(67/156): libcap-2.48-5.fc37.i686.rpm           5.8 MB/s |  68 kB     00:00    
(68/156): libcap-ng-0.8.3-3.fc37.i686.rpm       2.9 MB/s |  33 kB     00:00    
(69/156): libcom_err-1.46.5-3.fc37.i686.rpm     2.1 MB/s |  26 kB     00:00    
(70/156): libcurl-7.84.0-2.fc37.i686.rpm         21 MB/s | 332 kB     00:00    
(71/156): libeconf-0.4.0-4.fc37.i686.rpm        2.5 MB/s |  29 kB     00:00    
(72/156): libdb-5.3.28-53.fc37.i686.rpm          36 MB/s | 824 kB     00:00    
(73/156): libevent-2.1.12-7.fc37.i686.rpm        16 MB/s | 279 kB     00:00    
(74/156): libfdisk-2.38.1-1.fc37.i686.rpm        13 MB/s | 174 kB     00:00    
(75/156): libffi-3.4.2-9.fc37.i686.rpm          3.1 MB/s |  36 kB     00:00    
(76/156): libgcc-12.1.1-4.fc38.i686.rpm         9.1 MB/s | 116 kB     00:00    
(77/156): libgomp-12.1.1-4.fc38.i686.rpm         21 MB/s | 300 kB     00:00    
(78/156): libidn2-2.3.3-2.fc37.i686.rpm         8.6 MB/s | 108 kB     00:00    
(79/156): libmount-2.38.1-1.fc37.i686.rpm        11 MB/s | 141 kB     00:00    
(80/156): libnghttp2-1.48.0-2.fc37.i686.rpm     6.5 MB/s |  80 kB     00:00    
(81/156): libnsl2-2.0.0-4.fc37.i686.rpm         2.7 MB/s |  31 kB     00:00    
(82/156): libpkgconf-1.8.0-3.fc37.i686.rpm      3.3 MB/s |  38 kB     00:00    
(83/156): libpsl-0.21.1-6.fc37.i686.rpm         5.4 MB/s |  64 kB     00:00    
(84/156): libpwquality-1.4.4-11.fc37.i686.rpm   8.6 MB/s | 106 kB     00:00    
(85/156): libselinux-3.4-5.fc37.i686.rpm        7.6 MB/s |  91 kB     00:00    
(86/156): libsemanage-3.4-5.fc37.i686.rpm        11 MB/s | 129 kB     00:00    
(87/156): libsigsegv-2.14-3.fc37.i686.rpm       2.3 MB/s |  27 kB     00:00    
(88/156): libsepol-3.4-3.fc37.i686.rpm           21 MB/s | 335 kB     00:00    
(89/156): libsmartcols-2.38.1-1.fc37.i686.rpm   5.5 MB/s |  66 kB     00:00    
(90/156): libssh-config-0.9.6-5.fc37.noarch.rpm 719 kB/s | 7.8 kB     00:00    
(91/156): libssh-0.9.6-5.fc37.i686.rpm           14 MB/s | 216 kB     00:00    
(92/156): libtasn1-4.18.0-3.fc37.i686.rpm       5.9 MB/s |  76 kB     00:00    
(93/156): libstdc++-12.1.1-4.fc38.i686.rpm       38 MB/s | 850 kB     00:00    
(94/156): libtirpc-1.3.3-0.fc37.i686.rpm        8.1 MB/s | 101 kB     00:00    
(95/156): libutempter-1.2.1-7.fc37.i686.rpm     2.3 MB/s |  26 kB     00:00    
(96/156): libtool-ltdl-2.4.7-2.fc37.i686.rpm    2.2 MB/s |  39 kB     00:00    
(97/156): libunistring-1.0-2.fc37.i686.rpm       30 MB/s | 551 kB     00:00    
(98/156): libuuid-2.38.1-1.fc37.i686.rpm        2.5 MB/s |  29 kB     00:00    
(99/156): libverto-0.3.2-4.fc37.i686.rpm        1.8 MB/s |  21 kB     00:00    
(100/156): libxcrypt-4.4.28-3.fc38.i686.rpm     9.9 MB/s | 123 kB     00:00    
(101/156): libzstd-1.5.2-3.fc37.i686.rpm         15 MB/s | 274 kB     00:00    
(102/156): lua-libs-5.4.4-4.fc37.i686.rpm        13 MB/s | 243 kB     00:00    
(103/156): libxml2-2.9.14-3.fc37.i686.rpm        30 MB/s | 787 kB     00:00    
(104/156): lua-srpm-macros-1-7.fc37.noarch.rpm  702 kB/s | 8.8 kB     00:00    
(105/156): lz4-libs-1.9.3-5.fc37.i686.rpm       6.0 MB/s |  72 kB     00:00    
(106/156): make-4.3-11.fc37.i686.rpm             30 MB/s | 540 kB     00:00    
(107/156): ncurses-base-6.3-3.20220501.fc37.noa 5.1 MB/s |  61 kB     00:00    
(108/156): mpfr-4.1.0-10.fc37.i686.rpm           23 MB/s | 371 kB     00:00    
(109/156): nim-srpm-macros-3-7.fc37.noarch.rpm  762 kB/s | 8.4 kB     00:00    
(110/156): ncurses-libs-6.3-3.20220501.fc37.i68  21 MB/s | 347 kB     00:00    
(111/156): ocaml-srpm-macros-7-2.fc37.noarch.rp 1.2 MB/s |  13 kB     00:00    
(112/156): openblas-srpm-macros-2-12.fc37.noarc 695 kB/s | 7.5 kB     00:00    
(113/156): openldap-2.6.2-5.fc38.i686.rpm        17 MB/s | 273 kB     00:00    
(114/156): p11-kit-0.24.1-3.fc37.i686.rpm        19 MB/s | 337 kB     00:00    
(115/156): p11-kit-trust-0.24.1-3.fc37.i686.rpm 9.1 MB/s | 138 kB     00:00    
(116/156): package-notes-srpm-macros-0.4-16.fc3 871 kB/s |  11 kB     00:00    
(117/156): openssl-libs-3.0.5-2.fc37.i686.rpm    52 MB/s | 2.1 MB     00:00    
(118/156): pam-1.5.2-14.fc37.i686.rpm            28 MB/s | 536 kB     00:00    
(119/156): pam-libs-1.5.2-14.fc37.i686.rpm      5.0 MB/s |  61 kB     00:00    
(120/156): patch-2.7.6-17.fc37.i686.rpm         8.4 MB/s | 137 kB     00:00    
(121/156): pcre-8.45-1.fc37.2.i686.rpm           13 MB/s | 199 kB     00:00    
(122/156): pcre2-10.40-1.fc37.1.i686.rpm         16 MB/s | 234 kB     00:00    
(123/156): pcre2-syntax-10.40-1.fc37.1.noarch.r  11 MB/s | 142 kB     00:00    
(124/156): perl-srpm-macros-1-46.fc37.noarch.rp 759 kB/s | 8.3 kB     00:00    
(125/156): pkgconf-1.8.0-3.fc37.i686.rpm        3.7 MB/s |  42 kB     00:00    
(126/156): pkgconf-m4-1.8.0-3.fc37.noarch.rpm   1.3 MB/s |  14 kB     00:00    
(127/156): pkgconf-pkg-config-1.8.0-3.fc37.i686 896 kB/s |  10 kB     00:00    
(128/156): popt-1.19~rc1-3.fc37.i686.rpm        4.6 MB/s |  61 kB     00:00    
(129/156): publicsuffix-list-dafsa-20210518-5.f 4.9 MB/s |  58 kB     00:00    
(130/156): python-srpm-macros-3.11-4.fc37.noarc 2.2 MB/s |  25 kB     00:00    
(131/156): qt5-srpm-macros-5.15.5-2.fc37.noarch 733 kB/s | 8.1 kB     00:00    
(132/156): readline-8.1-7.fc37.i686.rpm          15 MB/s | 217 kB     00:00    
(133/156): redhat-rpm-config-227-1.fc37.noarch. 5.9 MB/s |  73 kB     00:00    
(134/156): rpm-4.18.0-0.beta1.4.fc37.i686.rpm    30 MB/s | 541 kB     00:00    
(135/156): rpm-build-4.18.0-0.beta1.4.fc37.i686 5.2 MB/s |  69 kB     00:00    
(136/156): rpm-build-libs-4.18.0-0.beta1.4.fc37 8.3 MB/s | 101 kB     00:00    
(137/156): rpmautospec-rpm-macros-0.3.0-1.fc37. 817 kB/s | 8.8 kB     00:00    
(138/156): rust-srpm-macros-22-1.fc37.noarch.rp 854 kB/s | 9.5 kB     00:00    
(139/156): rpm-libs-4.18.0-0.beta1.4.fc37.i686.  22 MB/s | 350 kB     00:00    
(140/156): setup-2.14.1-2.fc37.noarch.rpm        10 MB/s | 143 kB     00:00    
(141/156): sed-4.8-11.fc37.i686.rpm              18 MB/s | 300 kB     00:00    
(142/156): shadow-utils-4.11.1-4.fc37.i686.rpm   44 MB/s | 1.1 MB     00:00    
(143/156): sqlite-libs-3.39.2-2.fc37.i686.rpm    28 MB/s | 702 kB     00:00    
(144/156): systemd-libs-251.4-51.fc37.i686.rpm   26 MB/s | 650 kB     00:00    
(145/156): tar-1.34-3.fc36.i686.rpm              38 MB/s | 893 kB     00:00    
(146/156): unzip-6.0-58.fc37.i686.rpm            11 MB/s | 178 kB     00:00    
(147/156): tzdata-2022b-1.fc38.noarch.rpm        21 MB/s | 432 kB     00:00    
(148/156): which-2.21-35.fc37.i686.rpm          2.8 MB/s |  42 kB     00:00    
(149/156): util-linux-core-2.38.1-1.fc37.i686.r  23 MB/s | 468 kB     00:00    
(150/156): xxhash-libs-0.8.1-3.fc37.i686.rpm    4.6 MB/s |  59 kB     00:00    
(151/156): xz-5.2.5-10.fc37.i686.rpm             13 MB/s | 219 kB     00:00    
(152/156): xz-libs-5.2.5-10.fc37.i686.rpm       6.6 MB/s |  99 kB     00:00    
(153/156): util-linux-2.38.1-1.fc37.i686.rpm     41 MB/s | 2.3 MB     00:00    
(154/156): zip-3.0-33.fc37.i686.rpm              16 MB/s | 264 kB     00:00    
(155/156): zlib-1.2.12-4.fc37.i686.rpm          7.6 MB/s |  92 kB     00:00    
(156/156): zstd-1.5.2-3.fc37.i686.rpm            26 MB/s | 418 kB     00:00    
--------------------------------------------------------------------------------
Total                                            56 MB/s |  59 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.i686                            1/1 
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  Installing       : libssh-config-0.9.6-5.fc37.noarch                   14/156 
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  Installing       : gnat-srpm-macros-4-16.fc37.noarch                   16/156 
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  Installing       : fpc-srpm-macros-1.3-6.fc37.noarch                   18/156 
  Installing       : fedora-gpg-keys-38-0.2.noarch                       19/156 
  Installing       : fedora-release-38-0.2.noarch                        20/156 
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  Installing       : setup-2.14.1-2.fc37.noarch                          24/156 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.1-2.fc37.noarch                          24/156 
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  Installing       : basesystem-11-14.fc37.noarch                        26/156 
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  Installing       : bash-5.1.16-3.fc37.i686                             35/156 
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  Installing       : zlib-1.2.12-4.fc37.i686                             36/156 
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  Installing       : elfutils-libelf-0.187-6.fc37.i686                   39/156 
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  Installing       : readline-8.1-7.fc37.i686                            41/156 
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  Installing       : libuuid-2.38.1-1.fc37.i686                          43/156 
  Installing       : libxcrypt-4.4.28-3.fc38.i686                        44/156 
  Installing       : libzstd-1.5.2-3.fc37.i686                           45/156 
  Installing       : popt-1.19~rc1-3.fc37.i686                           46/156 
  Installing       : libblkid-2.38.1-1.fc37.i686                         47/156 
  Installing       : libattr-2.5.1-5.fc37.i686                           48/156 
  Installing       : libacl-2.3.1-4.fc37.i686                            49/156 
  Installing       : libcap-2.48-5.fc37.i686                             50/156 
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  Installing       : systemd-libs-251.4-51.fc37.i686                     53/156 
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  Installing       : mpfr-4.1.0-10.fc37.i686                             55/156 
  Installing       : dwz-0.14-7.fc37.i686                                56/156 
  Installing       : unzip-6.0-58.fc37.i686                              57/156 
  Installing       : file-libs-5.42-4.fc37.i686                          58/156 
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  Installing       : sqlite-libs-3.39.2-2.fc37.i686                      60/156 
  Installing       : alternatives-1.19-3.fc37.i686                       61/156 
  Installing       : libcap-ng-0.8.3-3.fc37.i686                         62/156 
  Installing       : audit-libs-3.0.8-3.fc37.i686                        63/156 
  Installing       : libcom_err-1.46.5-3.fc37.i686                       64/156 
  Installing       : libeconf-0.4.0-4.fc37.i686                          65/156 
  Installing       : pam-libs-1.5.2-14.fc37.i686                         66/156 
  Installing       : libffi-3.4.2-9.fc37.i686                            67/156 
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  Installing       : libsepol-3.4-3.fc37.i686                            69/156 
  Installing       : libsmartcols-2.38.1-1.fc37.i686                     70/156 
  Installing       : lua-libs-5.4.4-4.fc37.i686                          71/156 
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  Installing       : zip-3.0-33.fc37.i686                                74/156 
  Installing       : libpsl-0.21.1-6.fc37.i686                           75/156 
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  Installing       : gc-8.0.6-4.fc37.i686                                78/156 
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  Installing       : ed-1.18-2.fc37.i686                                 81/156 
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  Installing       : cyrus-sasl-lib-2.1.28-7.fc37.i686                   85/156 
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  Installing       : libbrotli-1.0.9-9.fc37.i686                         88/156 
  Installing       : libdb-5.3.28-53.fc37.i686                           89/156 
  Installing       : libgomp-12.1.1-4.fc38.i686                          90/156 
  Installing       : libnghttp2-1.48.0-2.fc37.i686                       91/156 
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  Installing       : libsigsegv-2.14-3.fc37.i686                         95/156 
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  Installing       : sed-4.8-11.fc37.i686                               106/156 
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  Installing       : gzip-1.12-2.fc37.i686                              115/156 
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  Installing       : libcurl-7.84.0-2.fc37.i686                         126/156 
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  Installing       : binutils-gold-2.38-24.fc38.i686                    129/156 
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  Running scriptlet: binutils-2.38-24.fc38.i686                         130/156 
  Installing       : elfutils-0.187-6.fc37.i686                         131/156 
  Installing       : curl-7.84.0-2.fc37.i686                            132/156 
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  Installing       : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         137/156 
  Installing       : fonts-srpm-macros-1:2.0.5-8.fc37.noarch            138/156 
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  Installing       : python-srpm-macros-3.11-4.fc37.noarch              140/156 
  Installing       : redhat-rpm-config-227-1.fc37.noarch                141/156 
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  Installing       : libsemanage-3.4-5.fc37.i686                        144/156 
  Installing       : shadow-utils-2:4.11.1-4.fc37.i686                  145/156 
  Running scriptlet: libutempter-1.2.1-7.fc37.i686                      146/156 
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  Installing       : patch-2.7.6-17.fc37.i686                           147/156 
  Installing       : tar-2:1.34-3.fc36.i686                             148/156 
  Installing       : xxhash-libs-0.8.1-3.fc37.i686                      149/156 
  Installing       : gdb-minimal-12.1-4.fc37.i686                       150/156 
  Installing       : debugedit-5.0-5.fc37.i686                          151/156 
  Installing       : rpm-build-4.18.0-0.beta1.4.fc37.i686               152/156 
  Installing       : util-linux-2.38.1-1.fc37.i686                      153/156 
  Installing       : make-1:4.3-11.fc37.i686                            154/156 
  Installing       : which-2.21-35.fc37.i686                            155/156 
  Installing       : info-6.8-4.fc37.i686                               156/156 
  Running scriptlet: filesystem-3.18-2.fc37.i686                        156/156 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            156/156 
  Running scriptlet: authselect-libs-1.4.0-3.fc37.i686                  156/156 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.i686                     156/156 
  Running scriptlet: info-6.8-4.fc37.i686                               156/156 
  Verifying        : alternatives-1.19-3.fc37.i686                        1/156 
  Verifying        : ansible-srpm-macros-1-6.fc37.noarch                  2/156 
  Verifying        : audit-libs-3.0.8-3.fc37.i686                         3/156 
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  Verifying        : basesystem-11-14.fc37.noarch                         6/156 
  Verifying        : bash-5.1.16-3.fc37.i686                              7/156 
  Verifying        : binutils-2.38-24.fc38.i686                           8/156 
  Verifying        : binutils-gold-2.38-24.fc38.i686                      9/156 
  Verifying        : bzip2-1.0.8-12.fc37.i686                            10/156 
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  Verifying        : coreutils-9.1-6.fc37.i686                           13/156 
  Verifying        : coreutils-common-9.1-6.fc37.i686                    14/156 
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  Verifying        : cracklib-2.9.6-28.fc36.i686                         16/156 
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  Verifying        : curl-7.84.0-2.fc37.i686                             18/156 
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  Verifying        : elfutils-0.187-6.fc37.i686                          25/156 
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  Verifying        : elfutils-default-yama-scope-0.187-6.fc37.noarch     27/156 
  Verifying        : elfutils-libelf-0.187-6.fc37.i686                   28/156 
  Verifying        : elfutils-libs-0.187-6.fc37.i686                     29/156 
  Verifying        : fedora-gpg-keys-38-0.2.noarch                       30/156 
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  Verifying        : fedora-release-identity-basic-38-0.2.noarch         33/156 
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  Verifying        : file-5.42-4.fc37.i686                               36/156 
  Verifying        : file-libs-5.42-4.fc37.i686                          37/156 
  Verifying        : filesystem-3.18-2.fc37.i686                         38/156 
  Verifying        : findutils-1:4.9.0-2.fc37.i686                       39/156 
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  Verifying        : fpc-srpm-macros-1.3-6.fc37.noarch                   41/156 
  Verifying        : gawk-5.1.1-4.fc37.i686                              42/156 
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  Verifying        : gdb-minimal-12.1-4.fc37.i686                        44/156 
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  Verifying        : ghc-srpm-macros-1.5.0-7.fc37.noarch                 46/156 
  Verifying        : glibc-2.36-1.fc37.i686                              47/156 
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  Verifying        : glibc-minimal-langpack-2.36-1.fc37.i686             50/156 
  Verifying        : gmp-1:6.2.1-3.fc37.i686                             51/156 
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  Verifying        : grep-3.7-4.fc37.i686                                54/156 
  Verifying        : guile22-2.2.7-6.fc37.i686                           55/156 
  Verifying        : gzip-1.12-2.fc37.i686                               56/156 
  Verifying        : info-6.8-4.fc37.i686                                57/156 
  Verifying        : jansson-2.13.1-5.fc37.i686                          58/156 
  Verifying        : kernel-srpm-macros-1.0-15.fc37.noarch               59/156 
  Verifying        : keyutils-libs-1.6.1-5.fc37.i686                     60/156 
  Verifying        : krb5-libs-1.19.2-11.fc37.1.i686                     61/156 
  Verifying        : libacl-2.3.1-4.fc37.i686                            62/156 
  Verifying        : libarchive-3.6.1-2.fc37.i686                        63/156 
  Verifying        : libattr-2.5.1-5.fc37.i686                           64/156 
  Verifying        : libblkid-2.38.1-1.fc37.i686                         65/156 
  Verifying        : libbrotli-1.0.9-9.fc37.i686                         66/156 
  Verifying        : libcap-2.48-5.fc37.i686                             67/156 
  Verifying        : libcap-ng-0.8.3-3.fc37.i686                         68/156 
  Verifying        : libcom_err-1.46.5-3.fc37.i686                       69/156 
  Verifying        : libcurl-7.84.0-2.fc37.i686                          70/156 
  Verifying        : libdb-5.3.28-53.fc37.i686                           71/156 
  Verifying        : libeconf-0.4.0-4.fc37.i686                          72/156 
  Verifying        : libevent-2.1.12-7.fc37.i686                         73/156 
  Verifying        : libfdisk-2.38.1-1.fc37.i686                         74/156 
  Verifying        : libffi-3.4.2-9.fc37.i686                            75/156 
  Verifying        : libgcc-12.1.1-4.fc38.i686                           76/156 
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  Verifying        : libidn2-2.3.3-2.fc37.i686                           78/156 
  Verifying        : libmount-2.38.1-1.fc37.i686                         79/156 
  Verifying        : libnghttp2-1.48.0-2.fc37.i686                       80/156 
  Verifying        : libnsl2-2.0.0-4.fc37.i686                           81/156 
  Verifying        : libpkgconf-1.8.0-3.fc37.i686                        82/156 
  Verifying        : libpsl-0.21.1-6.fc37.i686                           83/156 
  Verifying        : libpwquality-1.4.4-11.fc37.i686                     84/156 
  Verifying        : libselinux-3.4-5.fc37.i686                          85/156 
  Verifying        : libsemanage-3.4-5.fc37.i686                         86/156 
  Verifying        : libsepol-3.4-3.fc37.i686                            87/156 
  Verifying        : libsigsegv-2.14-3.fc37.i686                         88/156 
  Verifying        : libsmartcols-2.38.1-1.fc37.i686                     89/156 
  Verifying        : libssh-0.9.6-5.fc37.i686                            90/156 
  Verifying        : libssh-config-0.9.6-5.fc37.noarch                   91/156 
  Verifying        : libstdc++-12.1.1-4.fc38.i686                        92/156 
  Verifying        : libtasn1-4.18.0-3.fc37.i686                         93/156 
  Verifying        : libtirpc-1.3.3-0.fc37.i686                          94/156 
  Verifying        : libtool-ltdl-2.4.7-2.fc37.i686                      95/156 
  Verifying        : libunistring-1.0-2.fc37.i686                        96/156 
  Verifying        : libutempter-1.2.1-7.fc37.i686                       97/156 
  Verifying        : libuuid-2.38.1-1.fc37.i686                          98/156 
  Verifying        : libverto-0.3.2-4.fc37.i686                          99/156 
  Verifying        : libxcrypt-4.4.28-3.fc38.i686                       100/156 
  Verifying        : libxml2-2.9.14-3.fc37.i686                         101/156 
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  Verifying        : lua-libs-5.4.4-4.fc37.i686                         103/156 
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  Verifying        : lz4-libs-1.9.3-5.fc37.i686                         105/156 
  Verifying        : make-1:4.3-11.fc37.i686                            106/156 
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  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              112/156 
  Verifying        : openldap-2.6.2-5.fc38.i686                         113/156 
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  Verifying        : p11-kit-0.24.1-3.fc37.i686                         115/156 
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  Verifying        : pam-1.5.2-14.fc37.i686                             118/156 
  Verifying        : pam-libs-1.5.2-14.fc37.i686                        119/156 
  Verifying        : patch-2.7.6-17.fc37.i686                           120/156 
  Verifying        : pcre-8.45-1.fc37.2.i686                            121/156 
  Verifying        : pcre2-10.40-1.fc37.1.i686                          122/156 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 123/156 
  Verifying        : perl-srpm-macros-1-46.fc37.noarch                  124/156 
  Verifying        : pkgconf-1.8.0-3.fc37.i686                          125/156 
  Verifying        : pkgconf-m4-1.8.0-3.fc37.noarch                     126/156 
  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.i686               127/156 
  Verifying        : popt-1.19~rc1-3.fc37.i686                          128/156 
  Verifying        : publicsuffix-list-dafsa-20210518-5.fc37.noarch     129/156 
  Verifying        : python-srpm-macros-3.11-4.fc37.noarch              130/156 
  Verifying        : qt5-srpm-macros-5.15.5-2.fc37.noarch               131/156 
  Verifying        : readline-8.1-7.fc37.i686                           132/156 
  Verifying        : redhat-rpm-config-227-1.fc37.noarch                133/156 
  Verifying        : rpm-4.18.0-0.beta1.4.fc37.i686                     134/156 
  Verifying        : rpm-build-4.18.0-0.beta1.4.fc37.i686               135/156 
  Verifying        : rpm-build-libs-4.18.0-0.beta1.4.fc37.i686          136/156 
  Verifying        : rpm-libs-4.18.0-0.beta1.4.fc37.i686                137/156 
  Verifying        : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         138/156 
  Verifying        : rust-srpm-macros-22-1.fc37.noarch                  139/156 
  Verifying        : sed-4.8-11.fc37.i686                               140/156 
  Verifying        : setup-2.14.1-2.fc37.noarch                         141/156 
  Verifying        : shadow-utils-2:4.11.1-4.fc37.i686                  142/156 
  Verifying        : sqlite-libs-3.39.2-2.fc37.i686                     143/156 
  Verifying        : systemd-libs-251.4-51.fc37.i686                    144/156 
  Verifying        : tar-2:1.34-3.fc36.i686                             145/156 
  Verifying        : tzdata-2022b-1.fc38.noarch                         146/156 
  Verifying        : unzip-6.0-58.fc37.i686                             147/156 
  Verifying        : util-linux-2.38.1-1.fc37.i686                      148/156 
  Verifying        : util-linux-core-2.38.1-1.fc37.i686                 149/156 
  Verifying        : which-2.21-35.fc37.i686                            150/156 
  Verifying        : xxhash-libs-0.8.1-3.fc37.i686                      151/156 
  Verifying        : xz-5.2.5-10.fc37.i686                              152/156 
  Verifying        : xz-libs-5.2.5-10.fc37.i686                         153/156 
  Verifying        : zip-3.0-33.fc37.i686                               154/156 
  Verifying        : zlib-1.2.12-4.fc37.i686                            155/156 
  Verifying        : zstd-1.5.2-3.fc37.i686                             156/156 
Installed products updated.

Installed:
  alternatives-1.19-3.fc37.i686                                                 
  ansible-srpm-macros-1-6.fc37.noarch                                           
  audit-libs-3.0.8-3.fc37.i686                                                  
  authselect-1.4.0-3.fc37.i686                                                  
  authselect-libs-1.4.0-3.fc37.i686                                             
  basesystem-11-14.fc37.noarch                                                  
  bash-5.1.16-3.fc37.i686                                                       
  binutils-2.38-24.fc38.i686                                                    
  binutils-gold-2.38-24.fc38.i686                                               
  bzip2-1.0.8-12.fc37.i686                                                      
  bzip2-libs-1.0.8-12.fc37.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-6.fc37.i686                                                     
  coreutils-common-9.1-6.fc37.i686                                              
  cpio-2.13-13.fc37.i686                                                        
  cracklib-2.9.6-28.fc36.i686                                                   
  crypto-policies-20220815-1.gite4ed860.fc38.noarch                             
  curl-7.84.0-2.fc37.i686                                                       
  cyrus-sasl-lib-2.1.28-7.fc37.i686                                             
  debugedit-5.0-5.fc37.i686                                                     
  diffutils-3.8-3.fc37.i686                                                     
  dwz-0.14-7.fc37.i686                                                          
  ed-1.18-2.fc37.i686                                                           
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.187-6.fc37.i686                                                    
  elfutils-debuginfod-client-0.187-6.fc37.i686                                  
  elfutils-default-yama-scope-0.187-6.fc37.noarch                               
  elfutils-libelf-0.187-6.fc37.i686                                             
  elfutils-libs-0.187-6.fc37.i686                                               
  fedora-gpg-keys-38-0.2.noarch                                                 
  fedora-release-38-0.2.noarch                                                  
  fedora-release-common-38-0.2.noarch                                           
  fedora-release-identity-basic-38-0.2.noarch                                   
  fedora-repos-38-0.2.noarch                                                    
  fedora-repos-rawhide-38-0.2.noarch                                            
  file-5.42-4.fc37.i686                                                         
  file-libs-5.42-4.fc37.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc37.i686                                                 
  fonts-srpm-macros-1:2.0.5-8.fc37.noarch                                       
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.i686                                                        
  gc-8.0.6-4.fc37.i686                                                          
  gdb-minimal-12.1-4.fc37.i686                                                  
  gdbm-libs-1:1.23-2.fc37.i686                                                  
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36-1.fc37.i686                                                        
  glibc-common-2.36-1.fc37.i686                                                 
  glibc-gconv-extra-2.36-1.fc37.i686                                            
  glibc-minimal-langpack-2.36-1.fc37.i686                                       
  gmp-1:6.2.1-3.fc37.i686                                                       
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.1.0-4.fc37.noarch                                            
  grep-3.7-4.fc37.i686                                                          
  guile22-2.2.7-6.fc37.i686                                                     
  gzip-1.12-2.fc37.i686                                                         
  info-6.8-4.fc37.i686                                                          
  jansson-2.13.1-5.fc37.i686                                                    
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.i686                                               
  krb5-libs-1.19.2-11.fc37.1.i686                                               
  libacl-2.3.1-4.fc37.i686                                                      
  libarchive-3.6.1-2.fc37.i686                                                  
  libattr-2.5.1-5.fc37.i686                                                     
  libblkid-2.38.1-1.fc37.i686                                                   
  libbrotli-1.0.9-9.fc37.i686                                                   
  libcap-2.48-5.fc37.i686                                                       
  libcap-ng-0.8.3-3.fc37.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcurl-7.84.0-2.fc37.i686                                                    
  libdb-5.3.28-53.fc37.i686                                                     
  libeconf-0.4.0-4.fc37.i686                                                    
  libevent-2.1.12-7.fc37.i686                                                   
  libfdisk-2.38.1-1.fc37.i686                                                   
  libffi-3.4.2-9.fc37.i686                                                      
  libgcc-12.1.1-4.fc38.i686                                                     
  libgomp-12.1.1-4.fc38.i686                                                    
  libidn2-2.3.3-2.fc37.i686                                                     
  libmount-2.38.1-1.fc37.i686                                                   
  libnghttp2-1.48.0-2.fc37.i686                                                 
  libnsl2-2.0.0-4.fc37.i686                                                     
  libpkgconf-1.8.0-3.fc37.i686                                                  
  libpsl-0.21.1-6.fc37.i686                                                     
  libpwquality-1.4.4-11.fc37.i686                                               
  libselinux-3.4-5.fc37.i686                                                    
  libsemanage-3.4-5.fc37.i686                                                   
  libsepol-3.4-3.fc37.i686                                                      
  libsigsegv-2.14-3.fc37.i686                                                   
  libsmartcols-2.38.1-1.fc37.i686                                               
  libssh-0.9.6-5.fc37.i686                                                      
  libssh-config-0.9.6-5.fc37.noarch                                             
  libstdc++-12.1.1-4.fc38.i686                                                  
  libtasn1-4.18.0-3.fc37.i686                                                   
  libtirpc-1.3.3-0.fc37.i686                                                    
  libtool-ltdl-2.4.7-2.fc37.i686                                                
  libunistring-1.0-2.fc37.i686                                                  
  libutempter-1.2.1-7.fc37.i686                                                 
  libuuid-2.38.1-1.fc37.i686                                                    
  libverto-0.3.2-4.fc37.i686                                                    
  libxcrypt-4.4.28-3.fc38.i686                                                  
  libxml2-2.9.14-3.fc37.i686                                                    
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-4.fc37.i686                                                    
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc37.i686                                                    
  make-1:4.3-11.fc37.i686                                                       
  mpfr-4.1.0-10.fc37.i686                                                       
  ncurses-base-6.3-3.20220501.fc37.noarch                                       
  ncurses-libs-6.3-3.20220501.fc37.i686                                         
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.2-5.fc38.i686                                                    
  openssl-libs-1:3.0.5-2.fc37.i686                                              
  p11-kit-0.24.1-3.fc37.i686                                                    
  p11-kit-trust-0.24.1-3.fc37.i686                                              
  package-notes-srpm-macros-0.4-16.fc37.noarch                                  
  pam-1.5.2-14.fc37.i686                                                        
  pam-libs-1.5.2-14.fc37.i686                                                   
  patch-2.7.6-17.fc37.i686                                                      
  pcre-8.45-1.fc37.2.i686                                                       
  pcre2-10.40-1.fc37.1.i686                                                     
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  perl-srpm-macros-1-46.fc37.noarch                                             
  pkgconf-1.8.0-3.fc37.i686                                                     
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.i686                                          
  popt-1.19~rc1-3.fc37.i686                                                     
  publicsuffix-list-dafsa-20210518-5.fc37.noarch                                
  python-srpm-macros-3.11-4.fc37.noarch                                         
  qt5-srpm-macros-5.15.5-2.fc37.noarch                                          
  readline-8.1-7.fc37.i686                                                      
  redhat-rpm-config-227-1.fc37.noarch                                           
  rpm-4.18.0-0.beta1.4.fc37.i686                                                
  rpm-build-4.18.0-0.beta1.4.fc37.i686                                          
  rpm-build-libs-4.18.0-0.beta1.4.fc37.i686                                     
  rpm-libs-4.18.0-0.beta1.4.fc37.i686                                           
  rpmautospec-rpm-macros-0.3.0-1.fc37.noarch                                    
  rust-srpm-macros-22-1.fc37.noarch                                             
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.1-2.fc37.noarch                                                    
  shadow-utils-2:4.11.1-4.fc37.i686                                             
  sqlite-libs-3.39.2-2.fc37.i686                                                
  systemd-libs-251.4-51.fc37.i686                                               
  tar-2:1.34-3.fc36.i686                                                        
  tzdata-2022b-1.fc38.noarch                                                    
  unzip-6.0-58.fc37.i686                                                        
  util-linux-2.38.1-1.fc37.i686                                                 
  util-linux-core-2.38.1-1.fc37.i686                                            
  which-2.21-35.fc37.i686                                                       
  xxhash-libs-0.8.1-3.fc37.i686                                                 
  xz-5.2.5-10.fc37.i686                                                         
  xz-libs-5.2.5-10.fc37.i686                                                    
  zip-3.0-33.fc37.i686                                                          
  zlib-1.2.12-4.fc37.i686                                                       
  zstd-1.5.2-3.fc37.i686                                                        

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libcurl-7.84.0-2.fc37.i686
glibc-minimal-langpack-2.36-1.fc37.i686
cyrus-sasl-lib-2.1.28-7.fc37.i686
libxcrypt-4.4.28-3.fc38.i686
libselinux-3.4-5.fc37.i686
redhat-rpm-config-227-1.fc37.noarch
glibc-common-2.36-1.fc37.i686
pkgconf-pkg-config-1.8.0-3.fc37.i686
pcre2-syntax-10.40-1.fc37.1.noarch
info-6.8-4.fc37.i686
xz-5.2.5-10.fc37.i686
alternatives-1.19-3.fc37.i686
grep-3.7-4.fc37.i686
package-notes-srpm-macros-0.4-16.fc37.noarch
libutempter-1.2.1-7.fc37.i686
util-linux-core-2.38.1-1.fc37.i686
ncurses-libs-6.3-3.20220501.fc37.i686
libsmartcols-2.38.1-1.fc37.i686
pam-libs-1.5.2-14.fc37.i686
tzdata-2022b-1.fc38.noarch
lz4-libs-1.9.3-5.fc37.i686
zstd-1.5.2-3.fc37.i686
p11-kit-trust-0.24.1-3.fc37.i686
fedora-gpg-keys-38-0.2.noarch
libblkid-2.38.1-1.fc37.i686
rpm-build-libs-4.18.0-0.beta1.4.fc37.i686
zip-3.0-33.fc37.i686
libarchive-3.6.1-2.fc37.i686
patch-2.7.6-17.fc37.i686
bash-5.1.16-3.fc37.i686
jansson-2.13.1-5.fc37.i686
rpmautospec-rpm-macros-0.3.0-1.fc37.noarch
make-4.3-11.fc37.i686
libbrotli-1.0.9-9.fc37.i686
elfutils-libs-0.187-6.fc37.i686
libidn2-2.3.3-2.fc37.i686
qt5-srpm-macros-5.15.5-2.fc37.noarch
openssl-libs-3.0.5-2.fc37.i686
libnsl2-2.0.0-4.fc37.i686
binutils-2.38-24.fc38.i686
fedora-release-identity-basic-38-0.2.noarch
elfutils-default-yama-scope-0.187-6.fc37.noarch
diffutils-3.8-3.fc37.i686
libssh-0.9.6-5.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
krb5-libs-1.19.2-11.fc37.1.i686
ncurses-base-6.3-3.20220501.fc37.noarch
gdbm-libs-1.23-2.fc37.i686
gmp-6.2.1-3.fc37.i686
file-5.42-4.fc37.i686
libeconf-0.4.0-4.fc37.i686
libmount-2.38.1-1.fc37.i686
publicsuffix-list-dafsa-20210518-5.fc37.noarch
gzip-1.12-2.fc37.i686
guile22-2.2.7-6.fc37.i686
xz-libs-5.2.5-10.fc37.i686
mpfr-4.1.0-10.fc37.i686
unzip-6.0-58.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
pcre2-10.40-1.fc37.1.i686
ocaml-srpm-macros-7-2.fc37.noarch
sqlite-libs-3.39.2-2.fc37.i686
elfutils-0.187-6.fc37.i686
rust-srpm-macros-22-1.fc37.noarch
authselect-libs-1.4.0-3.fc37.i686
binutils-gold-2.38-24.fc38.i686
util-linux-2.38.1-1.fc37.i686
p11-kit-0.24.1-3.fc37.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
rpm-build-4.18.0-0.beta1.4.fc37.i686
findutils-4.9.0-2.fc37.i686
pam-1.5.2-14.fc37.i686
dwz-0.14-7.fc37.i686
ed-1.18-2.fc37.i686
libcap-ng-0.8.3-3.fc37.i686
libverto-0.3.2-4.fc37.i686
fonts-srpm-macros-2.0.5-8.fc37.noarch
libnghttp2-1.48.0-2.fc37.i686
libssh-config-0.9.6-5.fc37.noarch
coreutils-9.1-6.fc37.i686
rpm-4.18.0-0.beta1.4.fc37.i686
cpio-2.13-13.fc37.i686
fpc-srpm-macros-1.3-6.fc37.noarch
lua-srpm-macros-1-7.fc37.noarch
pkgconf-m4-1.8.0-3.fc37.noarch
perl-srpm-macros-1-46.fc37.noarch
ansible-srpm-macros-1-6.fc37.noarch
bzip2-libs-1.0.8-12.fc37.i686
libtool-ltdl-2.4.7-2.fc37.i686
libattr-2.5.1-5.fc37.i686
popt-1.19~rc1-3.fc37.i686
libxml2-2.9.14-3.fc37.i686
libuuid-2.38.1-1.fc37.i686
libzstd-1.5.2-3.fc37.i686
cracklib-2.9.6-28.fc36.i686
xxhash-libs-0.8.1-3.fc37.i686
openblas-srpm-macros-2-12.fc37.noarch
pcre-8.45-1.fc37.2.i686
setup-2.14.1-2.fc37.noarch
libacl-2.3.1-4.fc37.i686
sed-4.8-11.fc37.i686
python-srpm-macros-3.11-4.fc37.noarch
rpm-libs-4.18.0-0.beta1.4.fc37.i686
libsigsegv-2.14-3.fc37.i686
bzip2-1.0.8-12.fc37.i686
libgomp-12.1.1-4.fc38.i686
libpwquality-1.4.4-11.fc37.i686
gawk-5.1.1-4.fc37.i686
readline-8.1-7.fc37.i686
libtirpc-1.3.3-0.fc37.i686
libcap-2.48-5.fc37.i686
libevent-2.1.12-7.fc37.i686
audit-libs-3.0.8-3.fc37.i686
nim-srpm-macros-3-7.fc37.noarch
filesystem-3.18-2.fc37.i686
gdb-minimal-12.1-4.fc37.i686
libcom_err-1.46.5-3.fc37.i686
libfdisk-2.38.1-1.fc37.i686
libpsl-0.21.1-6.fc37.i686
libunistring-1.0-2.fc37.i686
debugedit-5.0-5.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
pkgconf-1.8.0-3.fc37.i686
curl-7.84.0-2.fc37.i686
shadow-utils-4.11.1-4.fc37.i686
systemd-libs-251.4-51.fc37.i686
fedora-release-38-0.2.noarch
libsepol-3.4-3.fc37.i686
libpkgconf-1.8.0-3.fc37.i686
fedora-release-common-38-0.2.noarch
basesystem-11-14.fc37.noarch
libffi-3.4.2-9.fc37.i686
gc-8.0.6-4.fc37.i686
tar-1.34-3.fc36.i686
libsemanage-3.4-5.fc37.i686
crypto-policies-20220815-1.gite4ed860.fc38.noarch
authselect-1.4.0-3.fc37.i686
openldap-2.6.2-5.fc38.i686
fedora-repos-38-0.2.noarch
keyutils-libs-1.6.1-5.fc37.i686
kernel-srpm-macros-1.0-15.fc37.noarch
coreutils-common-9.1-6.fc37.i686
libgcc-12.1.1-4.fc38.i686
lua-libs-5.4.4-4.fc37.i686
libtasn1-4.18.0-3.fc37.i686
which-2.21-35.fc37.i686
elfutils-libelf-0.187-6.fc37.i686
file-libs-5.42-4.fc37.i686
glibc-gconv-extra-2.36-1.fc37.i686
go-srpm-macros-3.1.0-4.fc37.noarch
fedora-repos-rawhide-38-0.2.noarch
elfutils-debuginfod-client-0.187-6.fc37.i686
libstdc++-12.1.1-4.fc38.i686
zlib-1.2.12-4.fc37.i686
libdb-5.3.28-53.fc37.i686
glibc-2.36-1.fc37.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1598486400
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-5.fc38.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1660558475.626399/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1660558475.626399/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1660558475.626399/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-9j6cymgo/mmseq/mmseq.spec) Config(child) 0 minutes 31 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/mmseq-1.0.11-5.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660558475.626399 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-5.fc38.src.rpm)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1660558475.626399/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  52 kB/s | 3.3 kB     00:00    
local                                            84 kB/s | 3.8 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for mmseq-1.0.11-5.fc38.src.rpm
Start: build setup for mmseq-1.0.11-5.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1598486400
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-5.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  89 kB/s | 3.3 kB     00:00    
local                                            90 kB/s | 3.8 kB     00:00    
Dependencies resolved.
================================================================================
 Package                     Arch     Version                 Repository   Size
================================================================================
Installing:
 armadillo-devel             i686     10.8.2-2.fc37           local       2.1 M
 boost-devel                 i686     1.78.0-9.fc37           local        11 M
 flexiblas-devel             i686     3.2.1-2.fc37            local       102 k
 gcc-c++                     i686     12.1.1-4.fc38           local        13 M
 gsl-devel                   i686     2.6-7.fc37              local       591 k
 htslib-devel                i686     1.15.1-1.fc38           copr_base   100 k
 perl-generators             noarch   1.13-8.fc37             local        16 k
 zlib-devel                  i686     1.2.12-4.fc37           local        44 k
Installing dependencies:
 SuperLU                     i686     5.3.0-3.fc37            local       198 k
 SuperLU-devel               i686     5.3.0-3.fc37            local        27 k
 annobin-docs                noarch   10.81-1.fc38            local        91 k
 annobin-plugin-gcc          i686     10.81-1.fc38            local       883 k
 armadillo                   i686     10.8.2-2.fc37           local        41 k
 arpack                      i686     3.8.0-5.fc37            local       118 k
 arpack-devel                i686     3.8.0-5.fc37            local        13 k
 autoconf                    noarch   2.71-3.fc37             local       720 k
 automake                    noarch   1.16.5-9.fc37           local       675 k
 boost                       i686     1.78.0-9.fc37           local        14 k
 boost-atomic                i686     1.78.0-9.fc37           local        20 k
 boost-chrono                i686     1.78.0-9.fc37           local        28 k
 boost-container             i686     1.78.0-9.fc37           local        41 k
 boost-context               i686     1.78.0-9.fc37           local        17 k
 boost-contract              i686     1.78.0-9.fc37           local        49 k
 boost-coroutine             i686     1.78.0-9.fc37           local        23 k
 boost-date-time             i686     1.78.0-9.fc37           local        16 k
 boost-fiber                 i686     1.78.0-9.fc37           local        45 k
 boost-filesystem            i686     1.78.0-9.fc37           local        71 k
 boost-graph                 i686     1.78.0-9.fc37           local       157 k
 boost-iostreams             i686     1.78.0-9.fc37           local        45 k
 boost-json                  i686     1.78.0-9.fc37           local       122 k
 boost-locale                i686     1.78.0-9.fc37           local       239 k
 boost-log                   i686     1.78.0-9.fc37           local       523 k
 boost-math                  i686     1.78.0-9.fc37           local       203 k
 boost-nowide                i686     1.78.0-9.fc37           local        22 k
 boost-numpy3                i686     1.78.0-9.fc37           local        31 k
 boost-program-options       i686     1.78.0-9.fc37           local       115 k
 boost-python3               i686     1.78.0-9.fc37           local       103 k
 boost-random                i686     1.78.0-9.fc37           local        27 k
 boost-regex                 i686     1.78.0-9.fc37           local       116 k
 boost-serialization         i686     1.78.0-9.fc37           local       143 k
 boost-stacktrace            i686     1.78.0-9.fc37           local        32 k
 boost-system                i686     1.78.0-9.fc37           local        16 k
 boost-test                  i686     1.78.0-9.fc37           local       252 k
 boost-thread                i686     1.78.0-9.fc37           local        63 k
 boost-timer                 i686     1.78.0-9.fc37           local        27 k
 boost-type_erasure          i686     1.78.0-9.fc37           local        36 k
 boost-wave                  i686     1.78.0-9.fc37           local       210 k
 cmake-filesystem            i686     3.24.0-1.fc38           local        16 k
 cpp                         i686     12.1.1-4.fc38           local        11 M
 emacs-filesystem            noarch   1:28.1-3.fc37           local       9.5 k
 expat                       i686     2.4.8-2.fc37            local       114 k
 flexiblas                   i686     3.2.1-2.fc37            local        33 k
 flexiblas-netlib            i686     3.2.1-2.fc37            local       3.0 M
 flexiblas-openblas-openmp   i686     3.2.1-2.fc37            local        17 k
 gcc                         i686     12.1.1-4.fc38           local        33 M
 gcc-gfortran                i686     12.1.1-4.fc38           local        12 M
 gcc-plugin-annobin          i686     12.1.1-4.fc38           local        51 k
 glibc-devel                 i686     2.36-1.fc37             local        92 k
 glibc-headers-x86           noarch   2.36-1.fc37             local       499 k
 groff-base                  i686     1.22.4-10.fc37          local       1.0 M
 gsl                         i686     2.6-7.fc37              local       1.1 M
 hdf5                        i686     1.12.1-10.fc37          local       2.1 M
 hdf5-devel                  i686     1.12.1-10.fc37          local       1.3 M
 htslib                      i686     1.15.1-1.fc38           copr_base   528 k
 kernel-headers              i686     5.19.0-1.fc37           local       1.3 M
 libaec                      i686     1.0.6-3.fc37            local        44 k
 libaec-devel                i686     1.0.6-3.fc37            local        12 k
 libasan                     i686     12.1.1-4.fc38           local       463 k
 libatomic                   i686     12.1.1-4.fc38           local        38 k
 libb2                       i686     0.98.1-7.fc37           local        35 k
 libgfortran                 i686     12.1.1-4.fc38           local       820 k
 libicu                      i686     71.1-1.fc37             local        10 M
 libicu-devel                i686     71.1-1.fc37             local       843 k
 libmpc                      i686     1.2.1-5.fc37            local        65 k
 libquadmath                 i686     12.1.1-4.fc38           local       246 k
 libquadmath-devel           i686     12.1.1-4.fc38           local        40 k
 libstdc++-devel             i686     12.1.1-4.fc38           local       2.4 M
 libubsan                    i686     12.1.1-4.fc38           local       218 k
 libxcrypt-devel             i686     4.4.28-3.fc38           local        28 k
 m4                          i686     1.4.19-4.fc37           local       300 k
 mpdecimal                   i686     2.5.1-4.fc37            local       106 k
 ncurses                     i686     6.3-3.20220501.fc37     local       406 k
 openblas                    i686     0.3.20-2.fc37           local        34 k
 openblas-openmp             i686     0.3.20-2.fc37           local       3.8 M
 perl-B                      i686     1.83-491.fc37           local       190 k
 perl-Carp                   noarch   1.52-489.fc37           local        29 k
 perl-Class-Struct           noarch   0.66-491.fc37           local        26 k
 perl-Data-Dumper            i686     2.184-490.fc37          local        58 k
 perl-DynaLoader             i686     1.52-491.fc37           local        30 k
 perl-Encode                 i686     4:3.19-491.fc37         local       1.2 M
 perl-Errno                  i686     1.36-491.fc37           local        19 k
 perl-Exporter               noarch   5.77-489.fc37           local        31 k
 perl-Fcntl                  i686     1.15-491.fc37           local        25 k
 perl-Fedora-VSP             noarch   0.001-29.fc37           local        23 k
 perl-File-Basename          noarch   2.85-491.fc37           local        22 k
 perl-File-Compare           noarch   1.100.700-491.fc37      local        18 k
 perl-File-Copy              noarch   2.39-491.fc37           local        24 k
 perl-File-Find              noarch   1.40-491.fc37           local        30 k
 perl-File-Path              noarch   2.18-489.fc37           local        35 k
 perl-File-Temp              noarch   1:0.231.100-489.fc37    local        59 k
 perl-File-stat              noarch   1.12-491.fc37           local        22 k
 perl-Getopt-Long            noarch   1:2.52-489.fc37         local        60 k
 perl-Getopt-Std             noarch   1.13-491.fc37           local        20 k
 perl-HTTP-Tiny              noarch   0.082-1.fc37            local        55 k
 perl-IO                     i686     1.50-491.fc37           local        93 k
 perl-IPC-Open3              noarch   1.22-491.fc37           local        27 k
 perl-MIME-Base64            i686     3.16-489.fc37           local        31 k
 perl-POSIX                  i686     2.03-491.fc37           local       106 k
 perl-PathTools              i686     3.84-489.fc37           local        85 k
 perl-Pod-Escapes            noarch   1:1.07-489.fc37         local        20 k
 perl-Pod-Perldoc            noarch   3.28.01-490.fc37        local        84 k
 perl-Pod-Simple             noarch   1:3.43-490.fc37         local       215 k
 perl-Pod-Usage              noarch   4:2.03-3.fc37           local        40 k
 perl-Scalar-List-Utils      i686     5:1.63-489.fc38         local        76 k
 perl-SelectSaver            noarch   1.02-491.fc37           local        16 k
 perl-Socket                 i686     4:2.035-2.fc37          local        56 k
 perl-Storable               i686     1:3.26-489.fc37         local        99 k
 perl-Symbol                 noarch   1.09-491.fc37           local        19 k
 perl-Term-ANSIColor         noarch   5.01-490.fc37           local        48 k
 perl-Term-Cap               noarch   1.17-489.fc37           local        22 k
 perl-Text-ParseWords        noarch   3.31-489.fc37           local        16 k
 perl-Text-Tabs+Wrap         noarch   2021.0814-489.fc37      local        22 k
 perl-Thread-Queue           noarch   3.14-489.fc37           local        21 k
 perl-Time-Local             noarch   2:1.300-489.fc37        local        33 k
 perl-constant               noarch   1.33-490.fc37           local        23 k
 perl-if                     noarch   0.61.000-491.fc37       local        18 k
 perl-interpreter            i686     4:5.36.0-491.fc37       local        77 k
 perl-libs                   i686     4:5.36.0-491.fc37       local       2.2 M
 perl-macros                 noarch   4:5.36.0-491.fc37       local        16 k
 perl-mro                    i686     1.26-491.fc37           local        34 k
 perl-overload               noarch   1.35-491.fc37           local        50 k
 perl-overloading            noarch   0.02-491.fc37           local        17 k
 perl-parent                 noarch   1:0.238-489.fc37        local        14 k
 perl-podlators              noarch   1:4.14-489.fc37         local       112 k
 perl-subs                   noarch   1.04-491.fc37           local        16 k
 perl-threads                i686     1:2.27-489.fc37         local        59 k
 perl-threads-shared         i686     1.64-489.fc37           local        45 k
 perl-vars                   noarch   1.05-491.fc37           local        17 k
 python-pip-wheel            noarch   22.2-1.fc37             local       1.4 M
 python-setuptools-wheel     noarch   62.6.0-2.fc37           local       712 k
 python3                     i686     3.11.0~rc1-1.fc38       local        27 k
 python3-libs                i686     3.11.0~rc1-1.fc38       local       9.3 M
 python3-numpy               i686     1:1.22.0-7.fc37         local       7.1 M

Transaction Summary
================================================================================
Install  143 Packages

Total download size: 144 M
Installed size: 580 M
Downloading Packages:
(1/143): htslib-devel-1.15.1-1.fc38.i686.rpm    1.7 MB/s | 100 kB     00:00    
(2/143): htslib-1.15.1-1.fc38.i686.rpm          5.8 MB/s | 528 kB     00:00    
(3/143): SuperLU-5.3.0-3.fc37.i686.rpm          1.8 MB/s | 198 kB     00:00    
(4/143): SuperLU-devel-5.3.0-3.fc37.i686.rpm    460 kB/s |  27 kB     00:00    
(5/143): armadillo-10.8.2-2.fc37.i686.rpm       1.4 MB/s |  41 kB     00:00    
(6/143): annobin-plugin-gcc-10.81-1.fc38.i686.r  24 MB/s | 883 kB     00:00    
(7/143): annobin-docs-10.81-1.fc38.noarch.rpm   1.3 MB/s |  91 kB     00:00    
(8/143): arpack-3.8.0-5.fc37.i686.rpm           5.8 MB/s | 118 kB     00:00    
(9/143): arpack-devel-3.8.0-5.fc37.i686.rpm     703 kB/s |  13 kB     00:00    
(10/143): autoconf-2.71-3.fc37.noarch.rpm        23 MB/s | 720 kB     00:00    
(11/143): boost-1.78.0-9.fc37.i686.rpm          955 kB/s |  14 kB     00:00    
(12/143): automake-1.16.5-9.fc37.noarch.rpm      18 MB/s | 675 kB     00:00    
(13/143): boost-atomic-1.78.0-9.fc37.i686.rpm   1.2 MB/s |  20 kB     00:00    
(14/143): boost-chrono-1.78.0-9.fc37.i686.rpm   2.0 MB/s |  28 kB     00:00    
(15/143): boost-context-1.78.0-9.fc37.i686.rpm  1.2 MB/s |  17 kB     00:00    
(16/143): boost-container-1.78.0-9.fc37.i686.rp 1.5 MB/s |  41 kB     00:00    
(17/143): boost-contract-1.78.0-9.fc37.i686.rpm 3.0 MB/s |  49 kB     00:00    
(18/143): boost-coroutine-1.78.0-9.fc37.i686.rp 1.6 MB/s |  23 kB     00:00    
(19/143): boost-date-time-1.78.0-9.fc37.i686.rp 1.2 MB/s |  16 kB     00:00    
(20/143): boost-fiber-1.78.0-9.fc37.i686.rpm    2.3 MB/s |  45 kB     00:00    
(21/143): boost-filesystem-1.78.0-9.fc37.i686.r 4.5 MB/s |  71 kB     00:00    
(22/143): boost-graph-1.78.0-9.fc37.i686.rpm    6.6 MB/s | 157 kB     00:00    
(23/143): boost-iostreams-1.78.0-9.fc37.i686.rp 2.2 MB/s |  45 kB     00:00    
(24/143): armadillo-devel-10.8.2-2.fc37.i686.rp 9.4 MB/s | 2.1 MB     00:00    
(25/143): boost-json-1.78.0-9.fc37.i686.rpm     5.5 MB/s | 122 kB     00:00    
(26/143): boost-log-1.78.0-9.fc37.i686.rpm       17 MB/s | 523 kB     00:00    
(27/143): boost-locale-1.78.0-9.fc37.i686.rpm   4.4 MB/s | 239 kB     00:00    
(28/143): boost-devel-1.78.0-9.fc37.i686.rpm     67 MB/s |  11 MB     00:00    
(29/143): boost-nowide-1.78.0-9.fc37.i686.rpm   1.3 MB/s |  22 kB     00:00    
(30/143): boost-math-1.78.0-9.fc37.i686.rpm     5.9 MB/s | 203 kB     00:00    
(31/143): boost-numpy3-1.78.0-9.fc37.i686.rpm   2.3 MB/s |  31 kB     00:00    
(32/143): boost-program-options-1.78.0-9.fc37.i 7.7 MB/s | 115 kB     00:00    
(33/143): boost-python3-1.78.0-9.fc37.i686.rpm  6.9 MB/s | 103 kB     00:00    
(34/143): boost-random-1.78.0-9.fc37.i686.rpm   1.9 MB/s |  27 kB     00:00    
(35/143): boost-regex-1.78.0-9.fc37.i686.rpm    7.2 MB/s | 116 kB     00:00    
(36/143): boost-serialization-1.78.0-9.fc37.i68 8.8 MB/s | 143 kB     00:00    
(37/143): boost-stacktrace-1.78.0-9.fc37.i686.r 2.4 MB/s |  32 kB     00:00    
(38/143): boost-system-1.78.0-9.fc37.i686.rpm   1.2 MB/s |  16 kB     00:00    
(39/143): boost-test-1.78.0-9.fc37.i686.rpm      15 MB/s | 252 kB     00:00    
(40/143): boost-thread-1.78.0-9.fc37.i686.rpm   4.8 MB/s |  63 kB     00:00    
(41/143): boost-timer-1.78.0-9.fc37.i686.rpm    2.1 MB/s |  27 kB     00:00    
(42/143): boost-type_erasure-1.78.0-9.fc37.i686 2.5 MB/s |  36 kB     00:00    
(43/143): boost-wave-1.78.0-9.fc37.i686.rpm      13 MB/s | 210 kB     00:00    
(44/143): cmake-filesystem-3.24.0-1.fc38.i686.r 991 kB/s |  16 kB     00:00    
(45/143): emacs-filesystem-28.1-3.fc37.noarch.r 876 kB/s | 9.5 kB     00:00    
(46/143): expat-2.4.8-2.fc37.i686.rpm           6.1 MB/s | 114 kB     00:00    
(47/143): flexiblas-3.2.1-2.fc37.i686.rpm       2.3 MB/s |  33 kB     00:00    
(48/143): flexiblas-devel-3.2.1-2.fc37.i686.rpm 4.9 MB/s | 102 kB     00:00    
(49/143): flexiblas-openblas-openmp-3.2.1-2.fc3 662 kB/s |  17 kB     00:00    
(50/143): flexiblas-netlib-3.2.1-2.fc37.i686.rp  48 MB/s | 3.0 MB     00:00    
(51/143): cpp-12.1.1-4.fc38.i686.rpm             39 MB/s |  11 MB     00:00    
(52/143): gcc-c++-12.1.1-4.fc38.i686.rpm         39 MB/s |  13 MB     00:00    
(53/143): gcc-plugin-annobin-12.1.1-4.fc38.i686 2.9 MB/s |  51 kB     00:00    
(54/143): glibc-devel-2.36-1.fc37.i686.rpm      5.0 MB/s |  92 kB     00:00    
(55/143): glibc-headers-x86-2.36-1.fc37.noarch.  22 MB/s | 499 kB     00:00    
(56/143): groff-base-1.22.4-10.fc37.i686.rpm     24 MB/s | 1.0 MB     00:00    
(57/143): gsl-2.6-7.fc37.i686.rpm                29 MB/s | 1.1 MB     00:00    
(58/143): gsl-devel-2.6-7.fc37.i686.rpm          18 MB/s | 591 kB     00:00    
(59/143): gcc-gfortran-12.1.1-4.fc38.i686.rpm    29 MB/s |  12 MB     00:00    
(60/143): hdf5-1.12.1-10.fc37.i686.rpm           13 MB/s | 2.1 MB     00:00    
(61/143): gcc-12.1.1-4.fc38.i686.rpm             45 MB/s |  33 MB     00:00    
(62/143): hdf5-devel-1.12.1-10.fc37.i686.rpm     10 MB/s | 1.3 MB     00:00    
(63/143): kernel-headers-5.19.0-1.fc37.i686.rpm  24 MB/s | 1.3 MB     00:00    
(64/143): libaec-1.0.6-3.fc37.i686.rpm          2.4 MB/s |  44 kB     00:00    
(65/143): libaec-devel-1.0.6-3.fc37.i686.rpm    801 kB/s |  12 kB     00:00    
(66/143): libasan-12.1.1-4.fc38.i686.rpm         25 MB/s | 463 kB     00:00    
(67/143): libatomic-12.1.1-4.fc38.i686.rpm      2.8 MB/s |  38 kB     00:00    
(68/143): libb2-0.98.1-7.fc37.i686.rpm          2.2 MB/s |  35 kB     00:00    
(69/143): libgfortran-12.1.1-4.fc38.i686.rpm     30 MB/s | 820 kB     00:00    
(70/143): libicu-devel-71.1-1.fc37.i686.rpm      25 MB/s | 843 kB     00:00    
(71/143): libmpc-1.2.1-5.fc37.i686.rpm          3.4 MB/s |  65 kB     00:00    
(72/143): libquadmath-12.1.1-4.fc38.i686.rpm     14 MB/s | 246 kB     00:00    
(73/143): libquadmath-devel-12.1.1-4.fc38.i686. 2.0 MB/s |  40 kB     00:00    
(74/143): libubsan-12.1.1-4.fc38.i686.rpm       8.7 MB/s | 218 kB     00:00    
(75/143): libxcrypt-devel-4.4.28-3.fc38.i686.rp 1.2 MB/s |  28 kB     00:00    
(76/143): libstdc++-devel-12.1.1-4.fc38.i686.rp  37 MB/s | 2.4 MB     00:00    
(77/143): m4-1.4.19-4.fc37.i686.rpm              14 MB/s | 300 kB     00:00    
(78/143): mpdecimal-2.5.1-4.fc37.i686.rpm       6.9 MB/s | 106 kB     00:00    
(79/143): openblas-0.3.20-2.fc37.i686.rpm       2.1 MB/s |  34 kB     00:00    
(80/143): ncurses-6.3-3.20220501.fc37.i686.rpm   17 MB/s | 406 kB     00:00    
(81/143): libicu-71.1-1.fc37.i686.rpm            58 MB/s |  10 MB     00:00    
(82/143): perl-B-1.83-491.fc37.i686.rpm         7.9 MB/s | 190 kB     00:00    
(83/143): perl-Carp-1.52-489.fc37.noarch.rpm    1.9 MB/s |  29 kB     00:00    
(84/143): perl-Class-Struct-0.66-491.fc37.noarc 2.0 MB/s |  26 kB     00:00    
(85/143): perl-DynaLoader-1.52-491.fc37.i686.rp 2.0 MB/s |  30 kB     00:00    
(86/143): perl-Data-Dumper-2.184-490.fc37.i686. 3.5 MB/s |  58 kB     00:00    
(87/143): openblas-openmp-0.3.20-2.fc37.i686.rp  56 MB/s | 3.8 MB     00:00    
(88/143): perl-Errno-1.36-491.fc37.i686.rpm     1.6 MB/s |  19 kB     00:00    
(89/143): perl-Exporter-5.77-489.fc37.noarch.rp 2.5 MB/s |  31 kB     00:00    
(90/143): perl-Fcntl-1.15-491.fc37.i686.rpm     1.7 MB/s |  25 kB     00:00    
(91/143): perl-Encode-3.19-491.fc37.i686.rpm     39 MB/s | 1.2 MB     00:00    
(92/143): perl-Fedora-VSP-0.001-29.fc37.noarch. 2.0 MB/s |  23 kB     00:00    
(93/143): perl-File-Basename-2.85-491.fc37.noar 1.9 MB/s |  22 kB     00:00    
(94/143): perl-File-Compare-1.100.700-491.fc37. 1.5 MB/s |  18 kB     00:00    
(95/143): perl-File-Copy-2.39-491.fc37.noarch.r 2.1 MB/s |  24 kB     00:00    
(96/143): perl-File-Find-1.40-491.fc37.noarch.r 2.4 MB/s |  30 kB     00:00    
(97/143): perl-File-Path-2.18-489.fc37.noarch.r 3.1 MB/s |  35 kB     00:00    
(98/143): perl-File-Temp-0.231.100-489.fc37.noa 4.8 MB/s |  59 kB     00:00    
(99/143): perl-File-stat-1.12-491.fc37.noarch.r 1.9 MB/s |  22 kB     00:00    
(100/143): perl-Getopt-Long-2.52-489.fc37.noarc 5.0 MB/s |  60 kB     00:00    
(101/143): perl-Getopt-Std-1.13-491.fc37.noarch 1.7 MB/s |  20 kB     00:00    
(102/143): perl-HTTP-Tiny-0.082-1.fc37.noarch.r 4.6 MB/s |  55 kB     00:00    
(103/143): perl-IO-1.50-491.fc37.i686.rpm       6.5 MB/s |  93 kB     00:00    
(104/143): perl-IPC-Open3-1.22-491.fc37.noarch. 2.3 MB/s |  27 kB     00:00    
(105/143): perl-MIME-Base64-3.16-489.fc37.i686. 1.8 MB/s |  31 kB     00:00    
(106/143): perl-POSIX-2.03-491.fc37.i686.rpm    7.5 MB/s | 106 kB     00:00    
(107/143): perl-PathTools-3.84-489.fc37.i686.rp 5.6 MB/s |  85 kB     00:00    
(108/143): perl-Pod-Escapes-1.07-489.fc37.noarc 1.7 MB/s |  20 kB     00:00    
(109/143): perl-Pod-Perldoc-3.28.01-490.fc37.no 6.7 MB/s |  84 kB     00:00    
(110/143): perl-Pod-Simple-3.43-490.fc37.noarch  14 MB/s | 215 kB     00:00    
(111/143): perl-Pod-Usage-2.03-3.fc37.noarch.rp 3.4 MB/s |  40 kB     00:00    
(112/143): perl-Scalar-List-Utils-1.63-489.fc38 5.0 MB/s |  76 kB     00:00    
(113/143): perl-SelectSaver-1.02-491.fc37.noarc 1.4 MB/s |  16 kB     00:00    
(114/143): perl-Socket-2.035-2.fc37.i686.rpm    3.8 MB/s |  56 kB     00:00    
(115/143): perl-Symbol-1.09-491.fc37.noarch.rpm 1.5 MB/s |  19 kB     00:00    
(116/143): perl-Storable-3.26-489.fc37.i686.rpm 6.9 MB/s |  99 kB     00:00    
(117/143): perl-Term-ANSIColor-5.01-490.fc37.no 3.5 MB/s |  48 kB     00:00    
(118/143): perl-Term-Cap-1.17-489.fc37.noarch.r 1.9 MB/s |  22 kB     00:00    
(119/143): perl-Text-ParseWords-3.31-489.fc37.n 1.4 MB/s |  16 kB     00:00    
(120/143): perl-Text-Tabs+Wrap-2021.0814-489.fc 1.9 MB/s |  22 kB     00:00    
(121/143): perl-Time-Local-1.300-489.fc37.noarc 2.9 MB/s |  33 kB     00:00    
(122/143): perl-Thread-Queue-3.14-489.fc37.noar 1.4 MB/s |  21 kB     00:00    
(123/143): perl-constant-1.33-490.fc37.noarch.r 1.9 MB/s |  23 kB     00:00    
(124/143): perl-generators-1.13-8.fc37.noarch.r 1.3 MB/s |  16 kB     00:00    
(125/143): perl-if-0.61.000-491.fc37.noarch.rpm 1.6 MB/s |  18 kB     00:00    
(126/143): perl-interpreter-5.36.0-491.fc37.i68 4.8 MB/s |  77 kB     00:00    
(127/143): perl-macros-5.36.0-491.fc37.noarch.r 1.3 MB/s |  16 kB     00:00    
(128/143): perl-mro-1.26-491.fc37.i686.rpm      2.3 MB/s |  34 kB     00:00    
(129/143): perl-overload-1.35-491.fc37.noarch.r 3.9 MB/s |  50 kB     00:00    
(130/143): perl-overloading-0.02-491.fc37.noarc 1.4 MB/s |  17 kB     00:00    
(131/143): perl-parent-0.238-489.fc37.noarch.rp 1.2 MB/s |  14 kB     00:00    
(132/143): perl-libs-5.36.0-491.fc37.i686.rpm    53 MB/s | 2.2 MB     00:00    
(133/143): perl-subs-1.04-491.fc37.noarch.rpm   1.4 MB/s |  16 kB     00:00    
(134/143): perl-podlators-4.14-489.fc37.noarch. 8.3 MB/s | 112 kB     00:00    
(135/143): perl-threads-2.27-489.fc37.i686.rpm  3.6 MB/s |  59 kB     00:00    
(136/143): perl-vars-1.05-491.fc37.noarch.rpm   1.5 MB/s |  17 kB     00:00    
(137/143): perl-threads-shared-1.64-489.fc37.i6 3.2 MB/s |  45 kB     00:00    
(138/143): python3-3.11.0~rc1-1.fc38.i686.rpm   2.3 MB/s |  27 kB     00:00    
(139/143): python-pip-wheel-22.2-1.fc37.noarch.  45 MB/s | 1.4 MB     00:00    
(140/143): python-setuptools-wheel-62.6.0-2.fc3  22 MB/s | 712 kB     00:00    
(141/143): zlib-devel-1.2.12-4.fc37.i686.rpm    2.5 MB/s |  44 kB     00:00    
(142/143): python3-numpy-1.22.0-7.fc37.i686.rpm  59 MB/s | 7.1 MB     00:00    
(143/143): python3-libs-3.11.0~rc1-1.fc38.i686.  49 MB/s | 9.3 MB     00:00    
--------------------------------------------------------------------------------
Total                                            72 MB/s | 144 MB     00:02     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : flexiblas-3.2.1-2.fc37.i686                          1/143 
  Installing       : libstdc++-devel-12.1.1-4.fc38.i686                   2/143 
  Installing       : zlib-devel-1.2.12-4.fc37.i686                        3/143 
  Installing       : python-setuptools-wheel-62.6.0-2.fc37.noarch         4/143 
  Installing       : python-pip-wheel-22.2-1.fc37.noarch                  5/143 
  Installing       : openblas-0.3.20-2.fc37.i686                          6/143 
  Installing       : kernel-headers-5.19.0-1.fc37.i686                    7/143 
  Installing       : glibc-headers-x86-2.36-1.fc37.noarch                 8/143 
  Installing       : libxcrypt-devel-4.4.28-3.fc38.i686                   9/143 
  Installing       : glibc-devel-2.36-1.fc37.i686                        10/143 
  Installing       : emacs-filesystem-1:28.1-3.fc37.noarch               11/143 
  Installing       : cmake-filesystem-3.24.0-1.fc38.i686                 12/143 
  Installing       : annobin-docs-10.81-1.fc38.noarch                    13/143 
  Installing       : boost-system-1.78.0-9.fc37.i686                     14/143 
  Installing       : boost-chrono-1.78.0-9.fc37.i686                     15/143 
  Installing       : boost-thread-1.78.0-9.fc37.i686                     16/143 
  Installing       : libquadmath-12.1.1-4.fc38.i686                      17/143 
  Installing       : libgfortran-12.1.1-4.fc38.i686                      18/143 
  Installing       : libicu-71.1-1.fc37.i686                             19/143 
  Installing       : libmpc-1.2.1-5.fc37.i686                            20/143 
  Installing       : boost-regex-1.78.0-9.fc37.i686                      21/143 
  Installing       : boost-context-1.78.0-9.fc37.i686                    22/143 
  Installing       : boost-atomic-1.78.0-9.fc37.i686                     23/143 
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  Installing       : libaec-1.0.6-3.fc37.i686                            25/143 
  Installing       : hdf5-1.12.1-10.fc37.i686                            26/143 
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  Installing       : boost-container-1.78.0-9.fc37.i686                  28/143 
  Installing       : libaec-devel-1.0.6-3.fc37.i686                      29/143 
  Installing       : boost-json-1.78.0-9.fc37.i686                       30/143 
  Installing       : boost-wave-1.78.0-9.fc37.i686                       31/143 
  Installing       : boost-fiber-1.78.0-9.fc37.i686                      32/143 
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  Installing       : boost-graph-1.78.0-9.fc37.i686                      35/143 
  Installing       : cpp-12.1.1-4.fc38.i686                              36/143 
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  Installing       : libicu-devel-71.1-1.fc37.i686                       38/143 
  Installing       : openblas-openmp-0.3.20-2.fc37.i686                  39/143 
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  Installing       : flexiblas-openblas-openmp-3.2.1-2.fc37.i686         41/143 
  Installing       : SuperLU-5.3.0-3.fc37.i686                           42/143 
  Installing       : arpack-3.8.0-5.fc37.i686                            43/143 
  Installing       : arpack-devel-3.8.0-5.fc37.i686                      44/143 
  Installing       : SuperLU-devel-5.3.0-3.fc37.i686                     45/143 
  Installing       : armadillo-10.8.2-2.fc37.i686                        46/143 
  Installing       : flexiblas-devel-3.2.1-2.fc37.i686                   47/143 
  Installing       : boost-type_erasure-1.78.0-9.fc37.i686               48/143 
  Installing       : boost-timer-1.78.0-9.fc37.i686                      49/143 
  Installing       : ncurses-6.3-3.20220501.fc37.i686                    50/143 
  Installing       : mpdecimal-2.5.1-4.fc37.i686                         51/143 
  Installing       : m4-1.4.19-4.fc37.i686                               52/143 
  Installing       : libubsan-12.1.1-4.fc38.i686                         53/143 
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Installed products updated.

Installed:
  SuperLU-5.3.0-3.fc37.i686                                                     
  SuperLU-devel-5.3.0-3.fc37.i686                                               
  annobin-docs-10.81-1.fc38.noarch                                              
  annobin-plugin-gcc-10.81-1.fc38.i686                                          
  armadillo-10.8.2-2.fc37.i686                                                  
  armadillo-devel-10.8.2-2.fc37.i686                                            
  arpack-3.8.0-5.fc37.i686                                                      
  arpack-devel-3.8.0-5.fc37.i686                                                
  autoconf-2.71-3.fc37.noarch                                                   
  automake-1.16.5-9.fc37.noarch                                                 
  boost-1.78.0-9.fc37.i686                                                      
  boost-atomic-1.78.0-9.fc37.i686                                               
  boost-chrono-1.78.0-9.fc37.i686                                               
  boost-container-1.78.0-9.fc37.i686                                            
  boost-context-1.78.0-9.fc37.i686                                              
  boost-contract-1.78.0-9.fc37.i686                                             
  boost-coroutine-1.78.0-9.fc37.i686                                            
  boost-date-time-1.78.0-9.fc37.i686                                            
  boost-devel-1.78.0-9.fc37.i686                                                
  boost-fiber-1.78.0-9.fc37.i686                                                
  boost-filesystem-1.78.0-9.fc37.i686                                           
  boost-graph-1.78.0-9.fc37.i686                                                
  boost-iostreams-1.78.0-9.fc37.i686                                            
  boost-json-1.78.0-9.fc37.i686                                                 
  boost-locale-1.78.0-9.fc37.i686                                               
  boost-log-1.78.0-9.fc37.i686                                                  
  boost-math-1.78.0-9.fc37.i686                                                 
  boost-nowide-1.78.0-9.fc37.i686                                               
  boost-numpy3-1.78.0-9.fc37.i686                                               
  boost-program-options-1.78.0-9.fc37.i686                                      
  boost-python3-1.78.0-9.fc37.i686                                              
  boost-random-1.78.0-9.fc37.i686                                               
  boost-regex-1.78.0-9.fc37.i686                                                
  boost-serialization-1.78.0-9.fc37.i686                                        
  boost-stacktrace-1.78.0-9.fc37.i686                                           
  boost-system-1.78.0-9.fc37.i686                                               
  boost-test-1.78.0-9.fc37.i686                                                 
  boost-thread-1.78.0-9.fc37.i686                                               
  boost-timer-1.78.0-9.fc37.i686                                                
  boost-type_erasure-1.78.0-9.fc37.i686                                         
  boost-wave-1.78.0-9.fc37.i686                                                 
  cmake-filesystem-3.24.0-1.fc38.i686                                           
  cpp-12.1.1-4.fc38.i686                                                        
  emacs-filesystem-1:28.1-3.fc37.noarch                                         
  expat-2.4.8-2.fc37.i686                                                       
  flexiblas-3.2.1-2.fc37.i686                                                   
  flexiblas-devel-3.2.1-2.fc37.i686                                             
  flexiblas-netlib-3.2.1-2.fc37.i686                                            
  flexiblas-openblas-openmp-3.2.1-2.fc37.i686                                   
  gcc-12.1.1-4.fc38.i686                                                        
  gcc-c++-12.1.1-4.fc38.i686                                                    
  gcc-gfortran-12.1.1-4.fc38.i686                                               
  gcc-plugin-annobin-12.1.1-4.fc38.i686                                         
  glibc-devel-2.36-1.fc37.i686                                                  
  glibc-headers-x86-2.36-1.fc37.noarch                                          
  groff-base-1.22.4-10.fc37.i686                                                
  gsl-2.6-7.fc37.i686                                                           
  gsl-devel-2.6-7.fc37.i686                                                     
  hdf5-1.12.1-10.fc37.i686                                                      
  hdf5-devel-1.12.1-10.fc37.i686                                                
  htslib-1.15.1-1.fc38.i686                                                     
  htslib-devel-1.15.1-1.fc38.i686                                               
  kernel-headers-5.19.0-1.fc37.i686                                             
  libaec-1.0.6-3.fc37.i686                                                      
  libaec-devel-1.0.6-3.fc37.i686                                                
  libasan-12.1.1-4.fc38.i686                                                    
  libatomic-12.1.1-4.fc38.i686                                                  
  libb2-0.98.1-7.fc37.i686                                                      
  libgfortran-12.1.1-4.fc38.i686                                                
  libicu-71.1-1.fc37.i686                                                       
  libicu-devel-71.1-1.fc37.i686                                                 
  libmpc-1.2.1-5.fc37.i686                                                      
  libquadmath-12.1.1-4.fc38.i686                                                
  libquadmath-devel-12.1.1-4.fc38.i686                                          
  libstdc++-devel-12.1.1-4.fc38.i686                                            
  libubsan-12.1.1-4.fc38.i686                                                   
  libxcrypt-devel-4.4.28-3.fc38.i686                                            
  m4-1.4.19-4.fc37.i686                                                         
  mpdecimal-2.5.1-4.fc37.i686                                                   
  ncurses-6.3-3.20220501.fc37.i686                                              
  openblas-0.3.20-2.fc37.i686                                                   
  openblas-openmp-0.3.20-2.fc37.i686                                            
  perl-B-1.83-491.fc37.i686                                                     
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-491.fc37.noarch                                        
  perl-Data-Dumper-2.184-490.fc37.i686                                          
  perl-DynaLoader-1.52-491.fc37.i686                                            
  perl-Encode-4:3.19-491.fc37.i686                                              
  perl-Errno-1.36-491.fc37.i686                                                 
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-Fcntl-1.15-491.fc37.i686                                                 
  perl-Fedora-VSP-0.001-29.fc37.noarch                                          
  perl-File-Basename-2.85-491.fc37.noarch                                       
  perl-File-Compare-1.100.700-491.fc37.noarch                                   
  perl-File-Copy-2.39-491.fc37.noarch                                           
  perl-File-Find-1.40-491.fc37.noarch                                           
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-491.fc37.noarch                                           
  perl-Getopt-Long-1:2.52-489.fc37.noarch                                       
  perl-Getopt-Std-1.13-491.fc37.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-491.fc37.i686                                                    
  perl-IPC-Open3-1.22-491.fc37.noarch                                           
  perl-MIME-Base64-3.16-489.fc37.i686                                           
  perl-POSIX-2.03-491.fc37.i686                                                 
  perl-PathTools-3.84-489.fc37.i686                                             
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.i686                                   
  perl-SelectSaver-1.02-491.fc37.noarch                                         
  perl-Socket-4:2.035-2.fc37.i686                                               
  perl-Storable-1:3.26-489.fc37.i686                                            
  perl-Symbol-1.09-491.fc37.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Thread-Queue-3.14-489.fc37.noarch                                        
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-constant-1.33-490.fc37.noarch                                            
  perl-generators-1.13-8.fc37.noarch                                            
  perl-if-0.61.000-491.fc37.noarch                                              
  perl-interpreter-4:5.36.0-491.fc37.i686                                       
  perl-libs-4:5.36.0-491.fc37.i686                                              
  perl-macros-4:5.36.0-491.fc37.noarch                                          
  perl-mro-1.26-491.fc37.i686                                                   
  perl-overload-1.35-491.fc37.noarch                                            
  perl-overloading-0.02-491.fc37.noarch                                         
  perl-parent-1:0.238-489.fc37.noarch                                           
  perl-podlators-1:4.14-489.fc37.noarch                                         
  perl-subs-1.04-491.fc37.noarch                                                
  perl-threads-1:2.27-489.fc37.i686                                             
  perl-threads-shared-1.64-489.fc37.i686                                        
  perl-vars-1.05-491.fc37.noarch                                                
  python-pip-wheel-22.2-1.fc37.noarch                                           
  python-setuptools-wheel-62.6.0-2.fc37.noarch                                  
  python3-3.11.0~rc1-1.fc38.i686                                                
  python3-libs-3.11.0~rc1-1.fc38.i686                                           
  python3-numpy-1:1.22.0-7.fc37.i686                                            
  zlib-devel-1.2.12-4.fc37.i686                                                 

Complete!
Finish: build setup for mmseq-1.0.11-5.fc38.src.rpm
Start: rpmbuild mmseq-1.0.11-5.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1598486400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.BrIqpA
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #2 (mmseq-zlib.patch):'
Patch #2 (mmseq-zlib.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OYFzGz
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mmseq-1.0.11/.package_note-mmseq-1.0.11-5.fc38.i386.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh mmseq 1.0.11-5.fc38 i386
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function 'int main(int, char**)':
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable 'curoff' [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable 'gff_pos' [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro 'WRITE_UINT'
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro 'WRITE_UINT'
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:16: warning: unused variable 'nextStrLen' [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function 'int main(int, char**)':
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function 'void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)':
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)':
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)':
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)':
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function 'void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)':
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'int main(int, char**)':
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable 'isident' [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro 'WRITE_UINT'
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro 'WRITE_UINT'
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:16: warning: unused variable 'nextStrLen' [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)':
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::string)':
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function 'std::vector<double> meanvar(std::vector<double>, double, double)':
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function 'int main(int, char**)':
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable 'threadid' [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable 'buf16384' [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable 'doublehit' set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)':
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::string)':
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
In file included from /usr/include/c++/12/ios:40,
                 from /usr/include/c++/12/ostream:38,
                 from /usr/include/c++/12/iostream:39,
                 from mmseq.cpp:18:
In function 'std::char_traits<char>::copy(char*, char const*, unsigned int)',
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_S_copy(char*, char const*, unsigned int)' at /usr/include/c++/12/bits/basic_string.h:423:21,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' at /usr/include/c++/12/bits/basic_string.tcc:532:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(unsigned int, unsigned int, char const*, unsigned int)' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::insert<char const*, void>(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::write(char const*, int)' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'boost::iostreams::detail::write_device_impl<boost::iostreams::output>::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'boost::iostreams::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'boost::iostreams::basic_gzip_compressor<std::allocator<char> >::write_long<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(long, boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, mpl_::bool_<true>)void [clone .isra.0]' at /usr/include/boost/iostreams/filter/gzip.hpp:282:30:
/usr/include/c++/12/bits/char_traits.h:431:56: warning: 'memcpy' accessing 2147483650 or more bytes at offsets [-1073741822, 3221225470] and [-1073741823, 1073741824] overlaps 2147483653 bytes at offset -3 [-Wrestrict]
  431 |         return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n));
      |                                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In function 'std::char_traits<char>::copy(char*, char const*, unsigned int)',
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_S_copy(char*, char const*, unsigned int)' at /usr/include/c++/12/bits/basic_string.h:423:21,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' at /usr/include/c++/12/bits/basic_string.tcc:532:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(unsigned int, unsigned int, char const*, unsigned int)' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::insert<char const*, void>(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::write(char const*, int)' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'boost::iostreams::detail::write_device_impl<boost::iostreams::output>::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'boost::iostreams::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'boost::iostreams::basic_gzip_compressor<std::allocator<char> >::write_long<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(long, boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, mpl_::bool_<true>)void [clone .isra.0]' at /usr/include/boost/iostreams/filter/gzip.hpp:285:30:
/usr/include/c++/12/bits/char_traits.h:431:56: warning: 'memcpy' accessing 2147483650 or more bytes at offsets [-1073741822, 3221225470] and [-1073741823, 1073741824] overlaps 2147483653 bytes at offset -3 [-Wrestrict]
  431 |         return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n));
      |                                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In function 'move',
    inlined from '_S_move' at /usr/include/c++/12/bits/basic_string.h:433:21,
    inlined from '_M_replace' at /usr/include/c++/12/bits/basic_string.tcc:531:22,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'insert' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'write' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'write_long.constprop' at /usr/include/boost/iostreams/filter/gzip.hpp:284:30:
/usr/include/c++/12/bits/char_traits.h:419:57: warning: '__builtin_memmove' reading 2 or more bytes from a region of size 1 [-Wstringop-overread]
  419 |         return static_cast<char_type*>(__builtin_memmove(__s1, __s2, __n));
      |                                                         ^
/usr/include/boost/iostreams/write.hpp: In function 'write_long.constprop':
/usr/include/boost/iostreams/write.hpp:43:6: note: source object 'c' of size 1
   43 | bool put(T& t, typename char_type_of<T>::type c)
      |      ^
In function 'move',
    inlined from '_S_move' at /usr/include/c++/12/bits/basic_string.h:433:21,
    inlined from '_M_replace' at /usr/include/c++/12/bits/basic_string.tcc:531:22,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'insert' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'write' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'write_long.constprop' at /usr/include/boost/iostreams/filter/gzip.hpp:285:30:
/usr/include/c++/12/bits/char_traits.h:419:57: warning: '__builtin_memmove' reading 2 or more bytes from a region of size 1 [-Wstringop-overread]
  419 |         return static_cast<char_type*>(__builtin_memmove(__s1, __s2, __n));
      |                                                         ^
/usr/include/boost/iostreams/write.hpp: In function 'write_long.constprop':
/usr/include/boost/iostreams/write.hpp:43:6: note: source object 'c' of size 1
   43 | bool put(T& t, typename char_type_of<T>::type c)
      |      ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function 'void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)':
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function 'std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)':
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Alignment>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function 'int main(int, char**)':
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition '(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))' and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function 'int main(int, char**)':
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable 'line' [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function 'void convert(char*, std::string)':
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function 'int main(int, char**)':
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function 'void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)':
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable 'mcse_ind' set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable 'iact_ind' set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function 'void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)':
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)':
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)':
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function 'int main(int, char**)':
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const unsigned int'} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'unsigned int'} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/cciul7lH.ltrans2.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BTQZb7
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mmseq-1.0.11/.package_note-mmseq-1.0.11-5.fc38.i386.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-5.fc38 --unique-debug-suffix -1.0.11-5.fc38.i386 --unique-debug-src-base mmseq-1.0.11-5.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/bam2hits
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/extract_transcripts
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/hitstools
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/mmcollapse
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/mmdiff
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/mmseq
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/offsetGTF
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/bin/t2g_hits
original debug info size: 20788kB, size after compression: 16804kB
/usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
542 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.CiBzEj
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mmseq-1.0.11/.package_note-mmseq-1.0.11-5.fc38.i386.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh mmseq 1.0.11-5.fc38 i386
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-5.fc38.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.t15j2P
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/share/doc/mmseq
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/share/doc/mmseq
+ cp -pr README.md /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/share/doc/mmseq
+ cp -pr COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/share/doc/mmseq
+ cp -pr doc/ /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-5.fc38 mmseq(x86-32) = 1.0.11-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.78.0 libboost_regex.so.1.78.0 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libflexiblas.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libgsl.so.25 libgslcblas.so.0 libhts.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.9) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-5.fc38.i686
Provides: mmseq-debugsource = 1.0.11-5.fc38 mmseq-debugsource(x86-32) = 1.0.11-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-5.fc38.i686
Provides: debuginfo(build-id) = 07da2e375c74beb66b229c1b6cefaeff6c3946e0 debuginfo(build-id) = 56c6fa5a0be17da0327cad6c810aa07dfba36579 debuginfo(build-id) = 84c74c1d769f6f78be8f163e34c2e6b4e8c41379 debuginfo(build-id) = ba753615423326a53d6bc0c57f6290a4a2aaa4ce debuginfo(build-id) = c134a6fae1c9b715c05e5b23080635c9e37ad35c debuginfo(build-id) = c68d39ea97efa00c02d309a0b9b04be66ce9d9d2 debuginfo(build-id) = ec0eb3d07774b32cdf6baf20f9e8237452c422f9 debuginfo(build-id) = f61bd239fb1c345db605f3afcfca889406cb880e mmseq-debuginfo = 1.0.11-5.fc38 mmseq-debuginfo(x86-32) = 1.0.11-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-32) = 1.0.11-5.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386
Wrote: /builddir/build/RPMS/mmseq-1.0.11-5.fc38.i686.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-5.fc38.i686.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-5.fc38.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.eTLsFc
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.IROGJG
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-5.fc38.src.rpm
Finish: build phase for mmseq-1.0.11-5.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1660558475.626399/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1660558475.626399/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1660558475.626399/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-5.fc38.src.rpm) Config(child) 1 minutes 42 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool