Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c193' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4732582 --chroot fedora-rawhide-x86_64 --detached
Version: 0.61
PID: 5341
Logging PID: 5342
Task:
{'appstream': True,
 'background': False,
 'bootstrap': 'off',
 'build_id': 4732582,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '1301338c7b4476be39b3b5b3487d99444b3406a9',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-5.fc38',
 'project_dirname': 'staging',
 'project_name': 'staging',
 'project_owner': 'jaruga',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jaruga/staging/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'}],
 'sandbox': 'jaruga/staging--jaruga',
 'source_json': {},
 'source_type': None,
 'submitter': 'jaruga',
 'tags': [],
 'task_id': '4732582-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/mmseq /var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq'...

Running: git checkout 1301338c7b4476be39b3b5b3487d99444b3406a9

cmd: ['git', 'checkout', '1301338c7b4476be39b3b5b3487d99444b3406a9']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq
rc: 0
stdout: 
stderr: Note: switching to '1301338c7b4476be39b3b5b3487d99444b3406a9'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 1301338 automatic import of mmseq

Running: copr-distgit-client sources

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jaruga/staging/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  23.6M      0 --:--:-- --:--:-- --:--:-- 23.6M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660558474.901174 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq/mmseq.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 248 kB/s |  21 kB     00:00    
fedora                                           36 MB/s |  65 MB     00:01    
Dependencies resolved.
================================================================================
 Package                       Arch   Version                      Repo    Size
================================================================================
Installing group/module packages:
 bash                          x86_64 5.1.16-3.fc37                fedora 1.7 M
 bzip2                         x86_64 1.0.8-12.fc37                fedora  52 k
 coreutils                     x86_64 9.1-6.fc37                   fedora 1.1 M
 cpio                          x86_64 2.13-13.fc37                 fedora 277 k
 diffutils                     x86_64 3.8-3.fc37                   fedora 378 k
 fedora-release-common         noarch 38-0.2                       fedora  22 k
 findutils                     x86_64 1:4.9.0-2.fc37               fedora 492 k
 gawk                          x86_64 5.1.1-4.fc37                 fedora 1.0 M
 glibc-minimal-langpack        x86_64 2.36-1.fc37                  fedora  81 k
 grep                          x86_64 3.7-4.fc37                   fedora 273 k
 gzip                          x86_64 1.12-2.fc37                  fedora 166 k
 info                          x86_64 6.8-4.fc37                   fedora 225 k
 patch                         x86_64 2.7.6-17.fc37                fedora 124 k
 redhat-rpm-config             noarch 227-1.fc37                   fedora  80 k
 rpm-build                     x86_64 4.18.0-0.beta1.4.fc37        fedora  76 k
 sed                           x86_64 4.8-11.fc37                  fedora 306 k
 shadow-utils                  x86_64 2:4.11.1-4.fc37              fedora 1.1 M
 tar                           x86_64 2:1.34-3.fc36                fedora 886 k
 unzip                         x86_64 6.0-58.fc37                  fedora 182 k
 util-linux                    x86_64 2.38.1-1.fc37                fedora 2.3 M
 which                         x86_64 2.21-35.fc37                 fedora  41 k
 xz                            x86_64 5.2.5-10.fc37                fedora 223 k
Installing dependencies:
 alternatives                  x86_64 1.19-3.fc37                  fedora  36 k
 ansible-srpm-macros           noarch 1-6.fc37                     fedora 7.5 k
 audit-libs                    x86_64 3.0.8-3.fc37                 fedora 116 k
 authselect                    x86_64 1.4.0-3.fc37                 fedora 144 k
 authselect-libs               x86_64 1.4.0-3.fc37                 fedora 248 k
 basesystem                    noarch 11-14.fc37                   fedora 7.0 k
 binutils                      x86_64 2.38-24.fc38                 fedora 5.4 M
 binutils-gold                 x86_64 2.38-24.fc38                 fedora 777 k
 bzip2-libs                    x86_64 1.0.8-12.fc37                fedora  41 k
 ca-certificates               noarch 2022.2.54-5.fc37             fedora 829 k
 coreutils-common              x86_64 9.1-6.fc37                   fedora 2.0 M
 cracklib                      x86_64 2.9.6-28.fc36                fedora  92 k
 crypto-policies               noarch 20220802-1.gita99dfd2.fc37   fedora  86 k
 curl                          x86_64 7.84.0-2.fc37                fedora 313 k
 cyrus-sasl-lib                x86_64 2.1.28-7.fc37                fedora 792 k
 debugedit                     x86_64 5.0-5.fc37                   fedora  77 k
 dwz                           x86_64 0.14-7.fc37                  fedora 129 k
 ed                            x86_64 1.18-2.fc37                  fedora  78 k
 efi-srpm-macros               noarch 5-6.fc37                     fedora  22 k
 elfutils                      x86_64 0.187-6.fc37                 fedora 528 k
 elfutils-debuginfod-client    x86_64 0.187-6.fc37                 fedora  39 k
 elfutils-default-yama-scope   noarch 0.187-6.fc37                 fedora  17 k
 elfutils-libelf               x86_64 0.187-6.fc37                 fedora 197 k
 elfutils-libs                 x86_64 0.187-6.fc37                 fedora 257 k
 fedora-gpg-keys               noarch 38-0.2                       fedora 125 k
 fedora-release                noarch 38-0.2                       fedora  12 k
 fedora-release-identity-basic noarch 38-0.2                       fedora  12 k
 fedora-repos                  noarch 38-0.2                       fedora  10 k
 fedora-repos-rawhide          noarch 38-0.2                       fedora 9.6 k
 file                          x86_64 5.42-4.fc37                  fedora  49 k
 file-libs                     x86_64 5.42-4.fc37                  fedora 676 k
 filesystem                    x86_64 3.18-2.fc37                  fedora 1.1 M
 fonts-srpm-macros             noarch 1:2.0.5-8.fc37               fedora  26 k
 fpc-srpm-macros               noarch 1.3-6.fc37                   fedora 7.7 k
 gdb-minimal                   x86_64 12.1-4.fc37                  fedora 3.9 M
 gdbm-libs                     x86_64 1:1.23-2.fc37                fedora  56 k
 ghc-srpm-macros               noarch 1.5.0-7.fc37                 fedora 7.8 k
 glibc                         x86_64 2.36-1.fc37                  fedora 2.1 M
 glibc-common                  x86_64 2.36-1.fc37                  fedora 359 k
 glibc-gconv-extra             x86_64 2.36-1.fc37                  fedora 1.6 M
 gmp                           x86_64 1:6.2.1-3.fc37               fedora 315 k
 gnat-srpm-macros              noarch 4-16.fc37                    fedora 8.3 k
 go-srpm-macros                noarch 3.1.0-4.fc37                 fedora  27 k
 jansson                       x86_64 2.13.1-5.fc37                fedora  44 k
 kernel-srpm-macros            noarch 1.0-15.fc37                  fedora 9.4 k
 keyutils-libs                 x86_64 1.6.1-5.fc37                 fedora  31 k
 krb5-libs                     x86_64 1.19.2-11.fc37.1             fedora 727 k
 libacl                        x86_64 2.3.1-4.fc37                 fedora  23 k
 libarchive                    x86_64 3.6.1-2.fc37                 fedora 397 k
 libattr                       x86_64 2.5.1-5.fc37                 fedora  18 k
 libblkid                      x86_64 2.38.1-1.fc37                fedora 107 k
 libbrotli                     x86_64 1.0.9-9.fc37                 fedora 315 k
 libcap                        x86_64 2.48-5.fc37                  fedora  67 k
 libcap-ng                     x86_64 0.8.3-3.fc37                 fedora  33 k
 libcom_err                    x86_64 1.46.5-3.fc37                fedora  25 k
 libcurl                       x86_64 7.84.0-2.fc37                fedora 306 k
 libdb                         x86_64 5.3.28-53.fc37               fedora 760 k
 libeconf                      x86_64 0.4.0-4.fc37                 fedora  27 k
 libevent                      x86_64 2.1.12-7.fc37                fedora 261 k
 libfdisk                      x86_64 2.38.1-1.fc37                fedora 160 k
 libffi                        x86_64 3.4.2-9.fc37                 fedora  37 k
 libgcc                        x86_64 12.1.1-4.fc38                fedora 106 k
 libgomp                       x86_64 12.1.1-4.fc38                fedora 293 k
 libidn2                       x86_64 2.3.3-2.fc37                 fedora 113 k
 libmount                      x86_64 2.38.1-1.fc37                fedora 135 k
 libnghttp2                    x86_64 1.48.0-2.fc37                fedora  75 k
 libnsl2                       x86_64 2.0.0-4.fc37                 fedora  30 k
 libpkgconf                    x86_64 1.8.0-3.fc37                 fedora  36 k
 libpsl                        x86_64 0.21.1-6.fc37                fedora  63 k
 libpwquality                  x86_64 1.4.4-11.fc37                fedora 116 k
 libselinux                    x86_64 3.4-5.fc37                   fedora  86 k
 libsemanage                   x86_64 3.4-5.fc37                   fedora 120 k
 libsepol                      x86_64 3.4-3.fc37                   fedora 322 k
 libsigsegv                    x86_64 2.14-3.fc37                  fedora  27 k
 libsmartcols                  x86_64 2.38.1-1.fc37                fedora  64 k
 libssh                        x86_64 0.9.6-5.fc37                 fedora 203 k
 libssh-config                 noarch 0.9.6-5.fc37                 fedora 7.8 k
 libstdc++                     x86_64 12.1.1-4.fc38                fedora 798 k
 libtasn1                      x86_64 4.18.0-3.fc37                fedora  75 k
 libtirpc                      x86_64 1.3.3-0.fc37                 fedora  93 k
 libunistring                  x86_64 1.0-2.fc37                   fedora 549 k
 libutempter                   x86_64 1.2.1-7.fc37                 fedora  26 k
 libuuid                       x86_64 2.38.1-1.fc37                fedora  28 k
 libverto                      x86_64 0.3.2-4.fc37                 fedora  21 k
 libxcrypt                     x86_64 4.4.28-3.fc38                fedora 117 k
 libxml2                       x86_64 2.9.14-3.fc37                fedora 752 k
 libzstd                       x86_64 1.5.2-3.fc37                 fedora 294 k
 lua-libs                      x86_64 5.4.4-4.fc37                 fedora 217 k
 lua-srpm-macros               noarch 1-7.fc37                     fedora 8.8 k
 lz4-libs                      x86_64 1.9.3-5.fc37                 fedora  70 k
 mpfr                          x86_64 4.1.0-10.fc37                fedora 331 k
 ncurses-base                  noarch 6.3-3.20220501.fc37          fedora  86 k
 ncurses-libs                  x86_64 6.3-3.20220501.fc37          fedora 329 k
 nim-srpm-macros               noarch 3-7.fc37                     fedora 8.4 k
 ocaml-srpm-macros             noarch 7-2.fc37                     fedora  13 k
 openblas-srpm-macros          noarch 2-12.fc37                    fedora 7.5 k
 openldap                      x86_64 2.6.2-5.fc38                 fedora 254 k
 openssl-libs                  x86_64 1:3.0.5-2.fc37               fedora 2.1 M
 p11-kit                       x86_64 0.24.1-3.fc37                fedora 376 k
 p11-kit-trust                 x86_64 0.24.1-3.fc37                fedora 138 k
 package-notes-srpm-macros     noarch 0.4-16.fc37                  fedora  11 k
 pam                           x86_64 1.5.2-14.fc37                fedora 560 k
 pam-libs                      x86_64 1.5.2-14.fc37                fedora  58 k
 pcre                          x86_64 8.45-1.fc37.2                fedora 202 k
 pcre2                         x86_64 10.40-1.fc37.1               fedora 236 k
 pcre2-syntax                  noarch 10.40-1.fc37.1               fedora 142 k
 perl-srpm-macros              noarch 1-46.fc37                    fedora 8.3 k
 pkgconf                       x86_64 1.8.0-3.fc37                 fedora  41 k
 pkgconf-m4                    noarch 1.8.0-3.fc37                 fedora  14 k
 pkgconf-pkg-config            x86_64 1.8.0-3.fc37                 fedora  10 k
 popt                          x86_64 1.19~rc1-3.fc37              fedora  65 k
 publicsuffix-list-dafsa       noarch 20210518-5.fc37              fedora  58 k
 python-srpm-macros            noarch 3.11-4.fc37                  fedora  25 k
 qt5-srpm-macros               noarch 5.15.5-2.fc37                fedora 8.1 k
 readline                      x86_64 8.1-7.fc37                   fedora 211 k
 rpm                           x86_64 4.18.0-0.beta1.4.fc37        fedora 570 k
 rpm-build-libs                x86_64 4.18.0-0.beta1.4.fc37        fedora  93 k
 rpm-libs                      x86_64 4.18.0-0.beta1.4.fc37        fedora 319 k
 rpmautospec-rpm-macros        noarch 0.3.0-1.fc37                 fedora 8.8 k
 rust-srpm-macros              noarch 22-1.fc37                    fedora 9.5 k
 setup                         noarch 2.14.1-2.fc37                fedora 149 k
 sqlite-libs                   x86_64 3.39.2-2.fc37                fedora 657 k
 systemd-libs                  x86_64 251.4-51.fc37                fedora 620 k
 tzdata                        noarch 2022a-4.fc37                 fedora 719 k
 util-linux-core               x86_64 2.38.1-1.fc37                fedora 470 k
 xxhash-libs                   x86_64 0.8.1-3.fc37                 fedora  41 k
 xz-libs                       x86_64 5.2.5-10.fc37                fedora  92 k
 zip                           x86_64 3.0-33.fc37                  fedora 259 k
 zlib                          x86_64 1.2.12-4.fc37                fedora  94 k
 zstd                          x86_64 1.5.2-3.fc37                 fedora 447 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  152 Packages

Total download size: 51 M
Installed size: 177 M
Downloading Packages:
(1/152): ansible-srpm-macros-1-6.fc37.noarch.rp 216 kB/s | 7.5 kB     00:00    
(2/152): alternatives-1.19-3.fc37.x86_64.rpm    618 kB/s |  36 kB     00:00    
(3/152): audit-libs-3.0.8-3.fc37.x86_64.rpm     1.3 MB/s | 116 kB     00:00    
(4/152): authselect-1.4.0-3.fc37.x86_64.rpm     2.1 MB/s | 144 kB     00:00    
(5/152): basesystem-11-14.fc37.noarch.rpm       404 kB/s | 7.0 kB     00:00    
(6/152): authselect-libs-1.4.0-3.fc37.x86_64.rp 4.3 MB/s | 248 kB     00:00    
(7/152): binutils-gold-2.38-24.fc38.x86_64.rpm   17 MB/s | 777 kB     00:00    
(8/152): bzip2-1.0.8-12.fc37.x86_64.rpm         2.4 MB/s |  52 kB     00:00    
(9/152): bash-5.1.16-3.fc37.x86_64.rpm           21 MB/s | 1.7 MB     00:00    
(10/152): bzip2-libs-1.0.8-12.fc37.x86_64.rpm   2.2 MB/s |  41 kB     00:00    
(11/152): binutils-2.38-24.fc38.x86_64.rpm       36 MB/s | 5.4 MB     00:00    
(12/152): coreutils-9.1-6.fc37.x86_64.rpm        19 MB/s | 1.1 MB     00:00    
(13/152): cpio-2.13-13.fc37.x86_64.rpm           11 MB/s | 277 kB     00:00    
(14/152): coreutils-common-9.1-6.fc37.x86_64.rp  51 MB/s | 2.0 MB     00:00    
(15/152): cracklib-2.9.6-28.fc36.x86_64.rpm     4.8 MB/s |  92 kB     00:00    
(16/152): crypto-policies-20220802-1.gita99dfd2 4.6 MB/s |  86 kB     00:00    
(17/152): curl-7.84.0-2.fc37.x86_64.rpm          13 MB/s | 313 kB     00:00    
(18/152): cyrus-sasl-lib-2.1.28-7.fc37.x86_64.r  31 MB/s | 792 kB     00:00    
(19/152): debugedit-5.0-5.fc37.x86_64.rpm       4.1 MB/s |  77 kB     00:00    
(20/152): diffutils-3.8-3.fc37.x86_64.rpm        17 MB/s | 378 kB     00:00    
(21/152): dwz-0.14-7.fc37.x86_64.rpm            6.2 MB/s | 129 kB     00:00    
(22/152): ed-1.18-2.fc37.x86_64.rpm             3.6 MB/s |  78 kB     00:00    
(23/152): efi-srpm-macros-5-6.fc37.noarch.rpm   1.2 MB/s |  22 kB     00:00    
(24/152): ca-certificates-2022.2.54-5.fc37.noar 4.0 MB/s | 829 kB     00:00    
(25/152): elfutils-debuginfod-client-0.187-6.fc 2.1 MB/s |  39 kB     00:00    
(26/152): elfutils-default-yama-scope-0.187-6.f 909 kB/s |  17 kB     00:00    
(27/152): elfutils-0.187-6.fc37.x86_64.rpm       22 MB/s | 528 kB     00:00    
(28/152): elfutils-libelf-0.187-6.fc37.x86_64.r 8.9 MB/s | 197 kB     00:00    
(29/152): fedora-gpg-keys-38-0.2.noarch.rpm     6.2 MB/s | 125 kB     00:00    
(30/152): elfutils-libs-0.187-6.fc37.x86_64.rpm  12 MB/s | 257 kB     00:00    
(31/152): fedora-release-38-0.2.noarch.rpm      645 kB/s |  12 kB     00:00    
(32/152): fedora-release-common-38-0.2.noarch.r 1.2 MB/s |  22 kB     00:00    
(33/152): fedora-release-identity-basic-38-0.2. 710 kB/s |  12 kB     00:00    
(34/152): fedora-repos-38-0.2.noarch.rpm        577 kB/s |  10 kB     00:00    
(35/152): fedora-repos-rawhide-38-0.2.noarch.rp 539 kB/s | 9.6 kB     00:00    
(36/152): file-5.42-4.fc37.x86_64.rpm           2.6 MB/s |  49 kB     00:00    
(37/152): file-libs-5.42-4.fc37.x86_64.rpm       12 MB/s | 676 kB     00:00    
(38/152): fonts-srpm-macros-2.0.5-8.fc37.noarch 1.4 MB/s |  26 kB     00:00    
(39/152): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 441 kB/s | 7.7 kB     00:00    
(40/152): gawk-5.1.1-4.fc37.x86_64.rpm           15 MB/s | 1.0 MB     00:00    
(41/152): findutils-4.9.0-2.fc37.x86_64.rpm     2.4 MB/s | 492 kB     00:00    
(42/152): filesystem-3.18-2.fc37.x86_64.rpm     5.1 MB/s | 1.1 MB     00:00    
(43/152): gdbm-libs-1.23-2.fc37.x86_64.rpm      3.0 MB/s |  56 kB     00:00    
(44/152): ghc-srpm-macros-1.5.0-7.fc37.noarch.r 454 kB/s | 7.8 kB     00:00    
(45/152): glibc-common-2.36-1.fc37.x86_64.rpm    15 MB/s | 359 kB     00:00    
(46/152): glibc-gconv-extra-2.36-1.fc37.x86_64.  37 MB/s | 1.6 MB     00:00    
(47/152): glibc-2.36-1.fc37.x86_64.rpm           22 MB/s | 2.1 MB     00:00    
(48/152): glibc-minimal-langpack-2.36-1.fc37.x8 4.3 MB/s |  81 kB     00:00    
(49/152): gnat-srpm-macros-4-16.fc37.noarch.rpm 479 kB/s | 8.3 kB     00:00    
(50/152): gmp-6.2.1-3.fc37.x86_64.rpm            12 MB/s | 315 kB     00:00    
(51/152): go-srpm-macros-3.1.0-4.fc37.noarch.rp 1.5 MB/s |  27 kB     00:00    
(52/152): grep-3.7-4.fc37.x86_64.rpm             10 MB/s | 273 kB     00:00    
(53/152): gdb-minimal-12.1-4.fc37.x86_64.rpm     18 MB/s | 3.9 MB     00:00    
(54/152): gzip-1.12-2.fc37.x86_64.rpm           7.9 MB/s | 166 kB     00:00    
(55/152): info-6.8-4.fc37.x86_64.rpm            9.6 MB/s | 225 kB     00:00    
(56/152): jansson-2.13.1-5.fc37.x86_64.rpm      2.4 MB/s |  44 kB     00:00    
(57/152): kernel-srpm-macros-1.0-15.fc37.noarch 531 kB/s | 9.4 kB     00:00    
(58/152): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 1.7 MB/s |  31 kB     00:00    
(59/152): libacl-2.3.1-4.fc37.x86_64.rpm        1.3 MB/s |  23 kB     00:00    
(60/152): libattr-2.5.1-5.fc37.x86_64.rpm       1.0 MB/s |  18 kB     00:00    
(61/152): libarchive-3.6.1-2.fc37.x86_64.rpm     14 MB/s | 397 kB     00:00    
(62/152): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm  14 MB/s | 727 kB     00:00    
(63/152): libblkid-2.38.1-1.fc37.x86_64.rpm     5.7 MB/s | 107 kB     00:00    
(64/152): libbrotli-1.0.9-9.fc37.x86_64.rpm      12 MB/s | 315 kB     00:00    
(65/152): libcap-2.48-5.fc37.x86_64.rpm         3.4 MB/s |  67 kB     00:00    
(66/152): libcap-ng-0.8.3-3.fc37.x86_64.rpm     1.8 MB/s |  33 kB     00:00    
(67/152): libcom_err-1.46.5-3.fc37.x86_64.rpm   1.4 MB/s |  25 kB     00:00    
(68/152): libdb-5.3.28-53.fc37.x86_64.rpm        27 MB/s | 760 kB     00:00    
(69/152): libcurl-7.84.0-2.fc37.x86_64.rpm      9.8 MB/s | 306 kB     00:00    
(70/152): libeconf-0.4.0-4.fc37.x86_64.rpm      1.5 MB/s |  27 kB     00:00    
(71/152): libffi-3.4.2-9.fc37.x86_64.rpm        2.0 MB/s |  37 kB     00:00    
(72/152): libevent-2.1.12-7.fc37.x86_64.rpm      12 MB/s | 261 kB     00:00    
(73/152): libfdisk-2.38.1-1.fc37.x86_64.rpm     6.9 MB/s | 160 kB     00:00    
(74/152): libgcc-12.1.1-4.fc38.x86_64.rpm       5.1 MB/s | 106 kB     00:00    
(75/152): libgomp-12.1.1-4.fc38.x86_64.rpm       14 MB/s | 293 kB     00:00    
(76/152): libidn2-2.3.3-2.fc37.x86_64.rpm       5.4 MB/s | 113 kB     00:00    
(77/152): libnghttp2-1.48.0-2.fc37.x86_64.rpm   3.9 MB/s |  75 kB     00:00    
(78/152): libnsl2-2.0.0-4.fc37.x86_64.rpm       1.6 MB/s |  30 kB     00:00    
(79/152): libmount-2.38.1-1.fc37.x86_64.rpm     6.2 MB/s | 135 kB     00:00    
(80/152): libpkgconf-1.8.0-3.fc37.x86_64.rpm    2.0 MB/s |  36 kB     00:00    
(81/152): libpsl-0.21.1-6.fc37.x86_64.rpm       3.3 MB/s |  63 kB     00:00    
(82/152): libpwquality-1.4.4-11.fc37.x86_64.rpm 5.7 MB/s | 116 kB     00:00    
(83/152): libselinux-3.4-5.fc37.x86_64.rpm      4.6 MB/s |  86 kB     00:00    
(84/152): libsemanage-3.4-5.fc37.x86_64.rpm     5.5 MB/s | 120 kB     00:00    
(85/152): libsepol-3.4-3.fc37.x86_64.rpm         12 MB/s | 322 kB     00:00    
(86/152): libsigsegv-2.14-3.fc37.x86_64.rpm     1.5 MB/s |  27 kB     00:00    
(87/152): libsmartcols-2.38.1-1.fc37.x86_64.rpm 3.3 MB/s |  64 kB     00:00    
(88/152): libssh-0.9.6-5.fc37.x86_64.rpm        8.8 MB/s | 203 kB     00:00    
(89/152): libssh-config-0.9.6-5.fc37.noarch.rpm 452 kB/s | 7.8 kB     00:00    
(90/152): libtasn1-4.18.0-3.fc37.x86_64.rpm     3.9 MB/s |  75 kB     00:00    
(91/152): libtirpc-1.3.3-0.fc37.x86_64.rpm      5.0 MB/s |  93 kB     00:00    
(92/152): libutempter-1.2.1-7.fc37.x86_64.rpm   1.4 MB/s |  26 kB     00:00    
(93/152): libstdc++-12.1.1-4.fc38.x86_64.rpm     15 MB/s | 798 kB     00:00    
(94/152): libunistring-1.0-2.fc37.x86_64.rpm     15 MB/s | 549 kB     00:00    
(95/152): libuuid-2.38.1-1.fc37.x86_64.rpm      1.5 MB/s |  28 kB     00:00    
(96/152): libverto-0.3.2-4.fc37.x86_64.rpm      1.2 MB/s |  21 kB     00:00    
(97/152): libxcrypt-4.4.28-3.fc38.x86_64.rpm    5.6 MB/s | 117 kB     00:00    
(98/152): libxml2-2.9.14-3.fc37.x86_64.rpm       27 MB/s | 752 kB     00:00    
(99/152): libzstd-1.5.2-3.fc37.x86_64.rpm        10 MB/s | 294 kB     00:00    
(100/152): lua-libs-5.4.4-4.fc37.x86_64.rpm     9.3 MB/s | 217 kB     00:00    
(101/152): lua-srpm-macros-1-7.fc37.noarch.rpm  509 kB/s | 8.8 kB     00:00    
(102/152): lz4-libs-1.9.3-5.fc37.x86_64.rpm     3.6 MB/s |  70 kB     00:00    
(103/152): ncurses-base-6.3-3.20220501.fc37.noa 4.6 MB/s |  86 kB     00:00    
(104/152): mpfr-4.1.0-10.fc37.x86_64.rpm         12 MB/s | 331 kB     00:00    
(105/152): ncurses-libs-6.3-3.20220501.fc37.x86  11 MB/s | 329 kB     00:00    
(106/152): nim-srpm-macros-3-7.fc37.noarch.rpm  472 kB/s | 8.4 kB     00:00    
(107/152): ocaml-srpm-macros-7-2.fc37.noarch.rp 769 kB/s |  13 kB     00:00    
(108/152): openblas-srpm-macros-2-12.fc37.noarc 426 kB/s | 7.5 kB     00:00    
(109/152): openldap-2.6.2-5.fc38.x86_64.rpm      12 MB/s | 254 kB     00:00    
(110/152): p11-kit-trust-0.24.1-3.fc37.x86_64.r 7.0 MB/s | 138 kB     00:00    
(111/152): p11-kit-0.24.1-3.fc37.x86_64.rpm      11 MB/s | 376 kB     00:00    
(112/152): package-notes-srpm-macros-0.4-16.fc3 646 kB/s |  11 kB     00:00    
(113/152): pam-libs-1.5.2-14.fc37.x86_64.rpm    3.1 MB/s |  58 kB     00:00    
(114/152): pam-1.5.2-14.fc37.x86_64.rpm          13 MB/s | 560 kB     00:00    
(115/152): patch-2.7.6-17.fc37.x86_64.rpm       6.4 MB/s | 124 kB     00:00    
(116/152): openssl-libs-3.0.5-2.fc37.x86_64.rpm  23 MB/s | 2.1 MB     00:00    
(117/152): pcre2-10.40-1.fc37.1.x86_64.rpm       11 MB/s | 236 kB     00:00    
(118/152): pcre-8.45-1.fc37.2.x86_64.rpm        8.2 MB/s | 202 kB     00:00    
(119/152): pcre2-syntax-10.40-1.fc37.1.noarch.r 6.7 MB/s | 142 kB     00:00    
(120/152): perl-srpm-macros-1-46.fc37.noarch.rp 475 kB/s | 8.3 kB     00:00    
(121/152): pkgconf-1.8.0-3.fc37.x86_64.rpm      2.3 MB/s |  41 kB     00:00    
(122/152): pkgconf-m4-1.8.0-3.fc37.noarch.rpm   825 kB/s |  14 kB     00:00    
(123/152): pkgconf-pkg-config-1.8.0-3.fc37.x86_ 581 kB/s |  10 kB     00:00    
(124/152): publicsuffix-list-dafsa-20210518-5.f 3.1 MB/s |  58 kB     00:00    
(125/152): popt-1.19~rc1-3.fc37.x86_64.rpm      3.3 MB/s |  65 kB     00:00    
(126/152): python-srpm-macros-3.11-4.fc37.noarc 1.4 MB/s |  25 kB     00:00    
(127/152): qt5-srpm-macros-5.15.5-2.fc37.noarch 468 kB/s | 8.1 kB     00:00    
(128/152): readline-8.1-7.fc37.x86_64.rpm       8.5 MB/s | 211 kB     00:00    
(129/152): redhat-rpm-config-227-1.fc37.noarch. 4.3 MB/s |  80 kB     00:00    
(130/152): rpm-build-4.18.0-0.beta1.4.fc37.x86_ 3.9 MB/s |  76 kB     00:00    
(131/152): rpm-build-libs-4.18.0-0.beta1.4.fc37 4.9 MB/s |  93 kB     00:00    
(132/152): rpm-4.18.0-0.beta1.4.fc37.x86_64.rpm  15 MB/s | 570 kB     00:00    
(133/152): rpmautospec-rpm-macros-0.3.0-1.fc37. 506 kB/s | 8.8 kB     00:00    
(134/152): rust-srpm-macros-22-1.fc37.noarch.rp 547 kB/s | 9.5 kB     00:00    
(135/152): rpm-libs-4.18.0-0.beta1.4.fc37.x86_6  11 MB/s | 319 kB     00:00    
(136/152): sed-4.8-11.fc37.x86_64.rpm            14 MB/s | 306 kB     00:00    
(137/152): setup-2.14.1-2.fc37.noarch.rpm       6.7 MB/s | 149 kB     00:00    
(138/152): sqlite-libs-3.39.2-2.fc37.x86_64.rpm  23 MB/s | 657 kB     00:00    
(139/152): systemd-libs-251.4-51.fc37.x86_64.rp  15 MB/s | 620 kB     00:00    
(140/152): shadow-utils-4.11.1-4.fc37.x86_64.rp  16 MB/s | 1.1 MB     00:00    
(141/152): tar-1.34-3.fc36.x86_64.rpm            28 MB/s | 886 kB     00:00    
(142/152): unzip-6.0-58.fc37.x86_64.rpm         7.5 MB/s | 182 kB     00:00    
(143/152): tzdata-2022a-4.fc37.noarch.rpm        17 MB/s | 719 kB     00:00    
(144/152): which-2.21-35.fc37.x86_64.rpm        2.2 MB/s |  41 kB     00:00    
(145/152): util-linux-2.38.1-1.fc37.x86_64.rpm   41 MB/s | 2.3 MB     00:00    
(146/152): util-linux-core-2.38.1-1.fc37.x86_64  12 MB/s | 470 kB     00:00    
(147/152): xxhash-libs-0.8.1-3.fc37.x86_64.rpm  2.2 MB/s |  41 kB     00:00    
(148/152): xz-5.2.5-10.fc37.x86_64.rpm           11 MB/s | 223 kB     00:00    
(149/152): xz-libs-5.2.5-10.fc37.x86_64.rpm     4.4 MB/s |  92 kB     00:00    
(150/152): zip-3.0-33.fc37.x86_64.rpm            11 MB/s | 259 kB     00:00    
(151/152): zlib-1.2.12-4.fc37.x86_64.rpm        5.0 MB/s |  94 kB     00:00    
(152/152): zstd-1.5.2-3.fc37.x86_64.rpm          12 MB/s | 447 kB     00:00    
--------------------------------------------------------------------------------
Total                                            30 MB/s |  51 MB     00:01     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                          1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-12.1.1-4.fc38.x86_64                          1/152 
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  Installing       : crypto-policies-20220802-1.gita99dfd2.fc37.noarc     2/152 
  Running scriptlet: crypto-policies-20220802-1.gita99dfd2.fc37.noarc     2/152 
  Installing       : fedora-release-identity-basic-38-0.2.noarch          3/152 
  Installing       : tzdata-2022a-4.fc37.noarch                           4/152 
  Installing       : rust-srpm-macros-22-1.fc37.noarch                    5/152 
  Installing       : qt5-srpm-macros-5.15.5-2.fc37.noarch                 6/152 
  Installing       : publicsuffix-list-dafsa-20210518-5.fc37.noarch       7/152 
  Installing       : pkgconf-m4-1.8.0-3.fc37.noarch                       8/152 
  Installing       : perl-srpm-macros-1-46.fc37.noarch                    9/152 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                  10/152 
  Installing       : openblas-srpm-macros-2-12.fc37.noarch               11/152 
  Installing       : ocaml-srpm-macros-7-2.fc37.noarch                   12/152 
  Installing       : nim-srpm-macros-3-7.fc37.noarch                     13/152 
  Installing       : ncurses-base-6.3-3.20220501.fc37.noarch             14/152 
  Installing       : libssh-config-0.9.6-5.fc37.noarch                   15/152 
  Installing       : kernel-srpm-macros-1.0-15.fc37.noarch               16/152 
  Installing       : gnat-srpm-macros-4-16.fc37.noarch                   17/152 
  Installing       : ghc-srpm-macros-1.5.0-7.fc37.noarch                 18/152 
  Installing       : fpc-srpm-macros-1.3-6.fc37.noarch                   19/152 
  Installing       : fedora-gpg-keys-38-0.2.noarch                       20/152 
  Installing       : fedora-release-38-0.2.noarch                        21/152 
  Installing       : fedora-release-common-38-0.2.noarch                 22/152 
  Installing       : fedora-repos-rawhide-38-0.2.noarch                  23/152 
  Installing       : fedora-repos-38-0.2.noarch                          24/152 
  Installing       : setup-2.14.1-2.fc37.noarch                          25/152 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.1-2.fc37.noarch                          25/152 
  Installing       : filesystem-3.18-2.fc37.x86_64                       26/152 
  Installing       : basesystem-11-14.fc37.noarch                        27/152 
  Installing       : glibc-gconv-extra-2.36-1.fc37.x86_64                28/152 
  Running scriptlet: glibc-gconv-extra-2.36-1.fc37.x86_64                28/152 
  Installing       : glibc-minimal-langpack-2.36-1.fc37.x86_64           29/152 
  Installing       : glibc-common-2.36-1.fc37.x86_64                     30/152 
  Running scriptlet: glibc-2.36-1.fc37.x86_64                            31/152 
  Installing       : glibc-2.36-1.fc37.x86_64                            31/152 
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  Installing       : ncurses-libs-6.3-3.20220501.fc37.x86_64             32/152 
  Installing       : bash-5.1.16-3.fc37.x86_64                           33/152 
  Running scriptlet: bash-5.1.16-3.fc37.x86_64                           33/152 
  Installing       : zlib-1.2.12-4.fc37.x86_64                           34/152 
  Installing       : xz-libs-5.2.5-10.fc37.x86_64                        35/152 
  Installing       : bzip2-libs-1.0.8-12.fc37.x86_64                     36/152 
  Installing       : elfutils-libelf-0.187-6.fc37.x86_64                 37/152 
  Installing       : libstdc++-12.1.1-4.fc38.x86_64                      38/152 
  Installing       : libuuid-2.38.1-1.fc37.x86_64                        39/152 
  Installing       : libzstd-1.5.2-3.fc37.x86_64                         40/152 
  Installing       : popt-1.19~rc1-3.fc37.x86_64                         41/152 
  Installing       : libblkid-2.38.1-1.fc37.x86_64                       42/152 
  Installing       : readline-8.1-7.fc37.x86_64                          43/152 
  Installing       : gmp-1:6.2.1-3.fc37.x86_64                           44/152 
  Installing       : libattr-2.5.1-5.fc37.x86_64                         45/152 
  Installing       : libacl-2.3.1-4.fc37.x86_64                          46/152 
  Installing       : libcap-2.48-5.fc37.x86_64                           47/152 
  Installing       : libxcrypt-4.4.28-3.fc38.x86_64                      48/152 
  Installing       : lz4-libs-1.9.3-5.fc37.x86_64                        49/152 
  Installing       : systemd-libs-251.4-51.fc37.x86_64                   50/152 
  Installing       : mpfr-4.1.0-10.fc37.x86_64                           51/152 
  Installing       : dwz-0.14-7.fc37.x86_64                              52/152 
  Installing       : unzip-6.0-58.fc37.x86_64                            53/152 
  Installing       : file-libs-5.42-4.fc37.x86_64                        54/152 
  Installing       : file-5.42-4.fc37.x86_64                             55/152 
  Installing       : sqlite-libs-3.39.2-2.fc37.x86_64                    56/152 
  Installing       : alternatives-1.19-3.fc37.x86_64                     57/152 
  Installing       : libcap-ng-0.8.3-3.fc37.x86_64                       58/152 
  Installing       : audit-libs-3.0.8-3.fc37.x86_64                      59/152 
  Installing       : libcom_err-1.46.5-3.fc37.x86_64                     60/152 
  Installing       : libeconf-0.4.0-4.fc37.x86_64                        61/152 
  Installing       : pam-libs-1.5.2-14.fc37.x86_64                       62/152 
  Installing       : libsepol-3.4-3.fc37.x86_64                          63/152 
  Installing       : libsmartcols-2.38.1-1.fc37.x86_64                   64/152 
  Installing       : libunistring-1.0-2.fc37.x86_64                      65/152 
  Installing       : libidn2-2.3.3-2.fc37.x86_64                         66/152 
  Installing       : lua-libs-5.4.4-4.fc37.x86_64                        67/152 
  Installing       : libpsl-0.21.1-6.fc37.x86_64                         68/152 
  Installing       : zip-3.0-33.fc37.x86_64                              69/152 
  Installing       : zstd-1.5.2-3.fc37.x86_64                            70/152 
  Installing       : libfdisk-2.38.1-1.fc37.x86_64                       71/152 
  Installing       : bzip2-1.0.8-12.fc37.x86_64                          72/152 
  Installing       : libxml2-2.9.14-3.fc37.x86_64                        73/152 
  Installing       : ed-1.18-2.fc37.x86_64                               74/152 
  Installing       : elfutils-default-yama-scope-0.187-6.fc37.noarch     75/152 
  Running scriptlet: elfutils-default-yama-scope-0.187-6.fc37.noarch     75/152 
  Installing       : package-notes-srpm-macros-0.4-16.fc37.noarch        76/152 
  Installing       : cpio-2.13-13.fc37.x86_64                            77/152 
  Installing       : diffutils-3.8-3.fc37.x86_64                         78/152 
  Installing       : gdbm-libs-1:1.23-2.fc37.x86_64                      79/152 
  Installing       : cyrus-sasl-lib-2.1.28-7.fc37.x86_64                 80/152 
  Installing       : jansson-2.13.1-5.fc37.x86_64                        81/152 
  Installing       : keyutils-libs-1.6.1-5.fc37.x86_64                   82/152 
  Installing       : libbrotli-1.0.9-9.fc37.x86_64                       83/152 
  Installing       : libdb-5.3.28-53.fc37.x86_64                         84/152 
  Installing       : libffi-3.4.2-9.fc37.x86_64                          85/152 
  Installing       : p11-kit-0.24.1-3.fc37.x86_64                        86/152 
  Installing       : libgomp-12.1.1-4.fc38.x86_64                        87/152 
  Installing       : libnghttp2-1.48.0-2.fc37.x86_64                     88/152 
  Installing       : libpkgconf-1.8.0-3.fc37.x86_64                      89/152 
  Installing       : pkgconf-1.8.0-3.fc37.x86_64                         90/152 
  Installing       : pkgconf-pkg-config-1.8.0-3.fc37.x86_64              91/152 
  Installing       : libsigsegv-2.14-3.fc37.x86_64                       92/152 
  Installing       : gawk-5.1.1-4.fc37.x86_64                            93/152 
  Installing       : libtasn1-4.18.0-3.fc37.x86_64                       94/152 
  Installing       : p11-kit-trust-0.24.1-3.fc37.x86_64                  95/152 
  Running scriptlet: p11-kit-trust-0.24.1-3.fc37.x86_64                  95/152 
  Installing       : libverto-0.3.2-4.fc37.x86_64                        96/152 
  Installing       : pcre-8.45-1.fc37.2.x86_64                           97/152 
  Installing       : grep-3.7-4.fc37.x86_64                              98/152 
  Installing       : xz-5.2.5-10.fc37.x86_64                             99/152 
  Installing       : pcre2-10.40-1.fc37.1.x86_64                        100/152 
  Installing       : libselinux-3.4-5.fc37.x86_64                       101/152 
  Installing       : sed-4.8-11.fc37.x86_64                             102/152 
  Installing       : findutils-1:4.9.0-2.fc37.x86_64                    103/152 
  Installing       : libmount-2.38.1-1.fc37.x86_64                      104/152 
  Installing       : util-linux-core-2.38.1-1.fc37.x86_64               105/152 
  Installing       : libsemanage-3.4-5.fc37.x86_64                      106/152 
  Installing       : shadow-utils-2:4.11.1-4.fc37.x86_64                107/152 
  Running scriptlet: libutempter-1.2.1-7.fc37.x86_64                    108/152 
  Installing       : libutempter-1.2.1-7.fc37.x86_64                    108/152 
  Installing       : patch-2.7.6-17.fc37.x86_64                         109/152 
  Installing       : tar-2:1.34-3.fc36.x86_64                           110/152 
  Installing       : xxhash-libs-0.8.1-3.fc37.x86_64                    111/152 
  Installing       : coreutils-common-9.1-6.fc37.x86_64                 112/152 
  Installing       : openssl-libs-1:3.0.5-2.fc37.x86_64                 113/152 
  Installing       : coreutils-9.1-6.fc37.x86_64                        114/152 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            115/152 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch            115/152 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            115/152 
  Installing       : krb5-libs-1.19.2-11.fc37.1.x86_64                  116/152 
  Installing       : libtirpc-1.3.3-0.fc37.x86_64                       117/152 
  Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64                118/152 
  Installing       : authselect-libs-1.4.0-3.fc37.x86_64                118/152 
  Installing       : gzip-1.12-2.fc37.x86_64                            119/152 
  Installing       : cracklib-2.9.6-28.fc36.x86_64                      120/152 
  Installing       : libpwquality-1.4.4-11.fc37.x86_64                  121/152 
  Installing       : authselect-1.4.0-3.fc37.x86_64                     122/152 
  Installing       : libnsl2-2.0.0-4.fc37.x86_64                        123/152 
  Installing       : pam-1.5.2-14.fc37.x86_64                           124/152 
  Installing       : libssh-0.9.6-5.fc37.x86_64                         125/152 
  Installing       : libarchive-3.6.1-2.fc37.x86_64                     126/152 
  Installing       : libevent-2.1.12-7.fc37.x86_64                      127/152 
  Installing       : openldap-2.6.2-5.fc38.x86_64                       128/152 
  Installing       : libcurl-7.84.0-2.fc37.x86_64                       129/152 
  Installing       : elfutils-libs-0.187-6.fc37.x86_64                  130/152 
  Installing       : elfutils-debuginfod-client-0.187-6.fc37.x86_64     131/152 
  Installing       : binutils-gold-2.38-24.fc38.x86_64                  132/152 
  Installing       : binutils-2.38-24.fc38.x86_64                       133/152 
  Running scriptlet: binutils-2.38-24.fc38.x86_64                       133/152 
  Installing       : elfutils-0.187-6.fc37.x86_64                       134/152 
  Installing       : gdb-minimal-12.1-4.fc37.x86_64                     135/152 
  Installing       : debugedit-5.0-5.fc37.x86_64                        136/152 
  Installing       : curl-7.84.0-2.fc37.x86_64                          137/152 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64                   138/152 
  Installing       : rpm-4.18.0-0.beta1.4.fc37.x86_64                   138/152 
  Installing       : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64              139/152 
  Installing       : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64        140/152 
  Installing       : efi-srpm-macros-5-6.fc37.noarch                    141/152 
  Installing       : lua-srpm-macros-1-7.fc37.noarch                    142/152 
  Installing       : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         143/152 
  Installing       : ansible-srpm-macros-1-6.fc37.noarch                144/152 
  Installing       : fonts-srpm-macros-1:2.0.5-8.fc37.noarch            145/152 
  Installing       : go-srpm-macros-3.1.0-4.fc37.noarch                 146/152 
  Installing       : python-srpm-macros-3.11-4.fc37.noarch              147/152 
  Installing       : redhat-rpm-config-227-1.fc37.noarch                148/152 
  Installing       : rpm-build-4.18.0-0.beta1.4.fc37.x86_64             149/152 
  Installing       : util-linux-2.38.1-1.fc37.x86_64                    150/152 
  Installing       : which-2.21-35.fc37.x86_64                          151/152 
  Installing       : info-6.8-4.fc37.x86_64                             152/152 
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                      152/152 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            152/152 
  Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64                152/152 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64                   152/152 
  Running scriptlet: info-6.8-4.fc37.x86_64                             152/152 
  Verifying        : alternatives-1.19-3.fc37.x86_64                      1/152 
  Verifying        : ansible-srpm-macros-1-6.fc37.noarch                  2/152 
  Verifying        : audit-libs-3.0.8-3.fc37.x86_64                       3/152 
  Verifying        : authselect-1.4.0-3.fc37.x86_64                       4/152 
  Verifying        : authselect-libs-1.4.0-3.fc37.x86_64                  5/152 
  Verifying        : basesystem-11-14.fc37.noarch                         6/152 
  Verifying        : bash-5.1.16-3.fc37.x86_64                            7/152 
  Verifying        : binutils-2.38-24.fc38.x86_64                         8/152 
  Verifying        : binutils-gold-2.38-24.fc38.x86_64                    9/152 
  Verifying        : bzip2-1.0.8-12.fc37.x86_64                          10/152 
  Verifying        : bzip2-libs-1.0.8-12.fc37.x86_64                     11/152 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             12/152 
  Verifying        : coreutils-9.1-6.fc37.x86_64                         13/152 
  Verifying        : coreutils-common-9.1-6.fc37.x86_64                  14/152 
  Verifying        : cpio-2.13-13.fc37.x86_64                            15/152 
  Verifying        : cracklib-2.9.6-28.fc36.x86_64                       16/152 
  Verifying        : crypto-policies-20220802-1.gita99dfd2.fc37.noarc    17/152 
  Verifying        : curl-7.84.0-2.fc37.x86_64                           18/152 
  Verifying        : cyrus-sasl-lib-2.1.28-7.fc37.x86_64                 19/152 
  Verifying        : debugedit-5.0-5.fc37.x86_64                         20/152 
  Verifying        : diffutils-3.8-3.fc37.x86_64                         21/152 
  Verifying        : dwz-0.14-7.fc37.x86_64                              22/152 
  Verifying        : ed-1.18-2.fc37.x86_64                               23/152 
  Verifying        : efi-srpm-macros-5-6.fc37.noarch                     24/152 
  Verifying        : elfutils-0.187-6.fc37.x86_64                        25/152 
  Verifying        : elfutils-debuginfod-client-0.187-6.fc37.x86_64      26/152 
  Verifying        : elfutils-default-yama-scope-0.187-6.fc37.noarch     27/152 
  Verifying        : elfutils-libelf-0.187-6.fc37.x86_64                 28/152 
  Verifying        : elfutils-libs-0.187-6.fc37.x86_64                   29/152 
  Verifying        : fedora-gpg-keys-38-0.2.noarch                       30/152 
  Verifying        : fedora-release-38-0.2.noarch                        31/152 
  Verifying        : fedora-release-common-38-0.2.noarch                 32/152 
  Verifying        : fedora-release-identity-basic-38-0.2.noarch         33/152 
  Verifying        : fedora-repos-38-0.2.noarch                          34/152 
  Verifying        : fedora-repos-rawhide-38-0.2.noarch                  35/152 
  Verifying        : file-5.42-4.fc37.x86_64                             36/152 
  Verifying        : file-libs-5.42-4.fc37.x86_64                        37/152 
  Verifying        : filesystem-3.18-2.fc37.x86_64                       38/152 
  Verifying        : findutils-1:4.9.0-2.fc37.x86_64                     39/152 
  Verifying        : fonts-srpm-macros-1:2.0.5-8.fc37.noarch             40/152 
  Verifying        : fpc-srpm-macros-1.3-6.fc37.noarch                   41/152 
  Verifying        : gawk-5.1.1-4.fc37.x86_64                            42/152 
  Verifying        : gdb-minimal-12.1-4.fc37.x86_64                      43/152 
  Verifying        : gdbm-libs-1:1.23-2.fc37.x86_64                      44/152 
  Verifying        : ghc-srpm-macros-1.5.0-7.fc37.noarch                 45/152 
  Verifying        : glibc-2.36-1.fc37.x86_64                            46/152 
  Verifying        : glibc-common-2.36-1.fc37.x86_64                     47/152 
  Verifying        : glibc-gconv-extra-2.36-1.fc37.x86_64                48/152 
  Verifying        : glibc-minimal-langpack-2.36-1.fc37.x86_64           49/152 
  Verifying        : gmp-1:6.2.1-3.fc37.x86_64                           50/152 
  Verifying        : gnat-srpm-macros-4-16.fc37.noarch                   51/152 
  Verifying        : go-srpm-macros-3.1.0-4.fc37.noarch                  52/152 
  Verifying        : grep-3.7-4.fc37.x86_64                              53/152 
  Verifying        : gzip-1.12-2.fc37.x86_64                             54/152 
  Verifying        : info-6.8-4.fc37.x86_64                              55/152 
  Verifying        : jansson-2.13.1-5.fc37.x86_64                        56/152 
  Verifying        : kernel-srpm-macros-1.0-15.fc37.noarch               57/152 
  Verifying        : keyutils-libs-1.6.1-5.fc37.x86_64                   58/152 
  Verifying        : krb5-libs-1.19.2-11.fc37.1.x86_64                   59/152 
  Verifying        : libacl-2.3.1-4.fc37.x86_64                          60/152 
  Verifying        : libarchive-3.6.1-2.fc37.x86_64                      61/152 
  Verifying        : libattr-2.5.1-5.fc37.x86_64                         62/152 
  Verifying        : libblkid-2.38.1-1.fc37.x86_64                       63/152 
  Verifying        : libbrotli-1.0.9-9.fc37.x86_64                       64/152 
  Verifying        : libcap-2.48-5.fc37.x86_64                           65/152 
  Verifying        : libcap-ng-0.8.3-3.fc37.x86_64                       66/152 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     67/152 
  Verifying        : libcurl-7.84.0-2.fc37.x86_64                        68/152 
  Verifying        : libdb-5.3.28-53.fc37.x86_64                         69/152 
  Verifying        : libeconf-0.4.0-4.fc37.x86_64                        70/152 
  Verifying        : libevent-2.1.12-7.fc37.x86_64                       71/152 
  Verifying        : libfdisk-2.38.1-1.fc37.x86_64                       72/152 
  Verifying        : libffi-3.4.2-9.fc37.x86_64                          73/152 
  Verifying        : libgcc-12.1.1-4.fc38.x86_64                         74/152 
  Verifying        : libgomp-12.1.1-4.fc38.x86_64                        75/152 
  Verifying        : libidn2-2.3.3-2.fc37.x86_64                         76/152 
  Verifying        : libmount-2.38.1-1.fc37.x86_64                       77/152 
  Verifying        : libnghttp2-1.48.0-2.fc37.x86_64                     78/152 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         79/152 
  Verifying        : libpkgconf-1.8.0-3.fc37.x86_64                      80/152 
  Verifying        : libpsl-0.21.1-6.fc37.x86_64                         81/152 
  Verifying        : libpwquality-1.4.4-11.fc37.x86_64                   82/152 
  Verifying        : libselinux-3.4-5.fc37.x86_64                        83/152 
  Verifying        : libsemanage-3.4-5.fc37.x86_64                       84/152 
  Verifying        : libsepol-3.4-3.fc37.x86_64                          85/152 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       86/152 
  Verifying        : libsmartcols-2.38.1-1.fc37.x86_64                   87/152 
  Verifying        : libssh-0.9.6-5.fc37.x86_64                          88/152 
  Verifying        : libssh-config-0.9.6-5.fc37.noarch                   89/152 
  Verifying        : libstdc++-12.1.1-4.fc38.x86_64                      90/152 
  Verifying        : libtasn1-4.18.0-3.fc37.x86_64                       91/152 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        92/152 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      93/152 
  Verifying        : libutempter-1.2.1-7.fc37.x86_64                     94/152 
  Verifying        : libuuid-2.38.1-1.fc37.x86_64                        95/152 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        96/152 
  Verifying        : libxcrypt-4.4.28-3.fc38.x86_64                      97/152 
  Verifying        : libxml2-2.9.14-3.fc37.x86_64                        98/152 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         99/152 
  Verifying        : lua-libs-5.4.4-4.fc37.x86_64                       100/152 
  Verifying        : lua-srpm-macros-1-7.fc37.noarch                    101/152 
  Verifying        : lz4-libs-1.9.3-5.fc37.x86_64                       102/152 
  Verifying        : mpfr-4.1.0-10.fc37.x86_64                          103/152 
  Verifying        : ncurses-base-6.3-3.20220501.fc37.noarch            104/152 
  Verifying        : ncurses-libs-6.3-3.20220501.fc37.x86_64            105/152 
  Verifying        : nim-srpm-macros-3-7.fc37.noarch                    106/152 
  Verifying        : ocaml-srpm-macros-7-2.fc37.noarch                  107/152 
  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              108/152 
  Verifying        : openldap-2.6.2-5.fc38.x86_64                       109/152 
  Verifying        : openssl-libs-1:3.0.5-2.fc37.x86_64                 110/152 
  Verifying        : p11-kit-0.24.1-3.fc37.x86_64                       111/152 
  Verifying        : p11-kit-trust-0.24.1-3.fc37.x86_64                 112/152 
  Verifying        : package-notes-srpm-macros-0.4-16.fc37.noarch       113/152 
  Verifying        : pam-1.5.2-14.fc37.x86_64                           114/152 
  Verifying        : pam-libs-1.5.2-14.fc37.x86_64                      115/152 
  Verifying        : patch-2.7.6-17.fc37.x86_64                         116/152 
  Verifying        : pcre-8.45-1.fc37.2.x86_64                          117/152 
  Verifying        : pcre2-10.40-1.fc37.1.x86_64                        118/152 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 119/152 
  Verifying        : perl-srpm-macros-1-46.fc37.noarch                  120/152 
  Verifying        : pkgconf-1.8.0-3.fc37.x86_64                        121/152 
  Verifying        : pkgconf-m4-1.8.0-3.fc37.noarch                     122/152 
  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.x86_64             123/152 
  Verifying        : popt-1.19~rc1-3.fc37.x86_64                        124/152 
  Verifying        : publicsuffix-list-dafsa-20210518-5.fc37.noarch     125/152 
  Verifying        : python-srpm-macros-3.11-4.fc37.noarch              126/152 
  Verifying        : qt5-srpm-macros-5.15.5-2.fc37.noarch               127/152 
  Verifying        : readline-8.1-7.fc37.x86_64                         128/152 
  Verifying        : redhat-rpm-config-227-1.fc37.noarch                129/152 
  Verifying        : rpm-4.18.0-0.beta1.4.fc37.x86_64                   130/152 
  Verifying        : rpm-build-4.18.0-0.beta1.4.fc37.x86_64             131/152 
  Verifying        : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64        132/152 
  Verifying        : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64              133/152 
  Verifying        : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         134/152 
  Verifying        : rust-srpm-macros-22-1.fc37.noarch                  135/152 
  Verifying        : sed-4.8-11.fc37.x86_64                             136/152 
  Verifying        : setup-2.14.1-2.fc37.noarch                         137/152 
  Verifying        : shadow-utils-2:4.11.1-4.fc37.x86_64                138/152 
  Verifying        : sqlite-libs-3.39.2-2.fc37.x86_64                   139/152 
  Verifying        : systemd-libs-251.4-51.fc37.x86_64                  140/152 
  Verifying        : tar-2:1.34-3.fc36.x86_64                           141/152 
  Verifying        : tzdata-2022a-4.fc37.noarch                         142/152 
  Verifying        : unzip-6.0-58.fc37.x86_64                           143/152 
  Verifying        : util-linux-2.38.1-1.fc37.x86_64                    144/152 
  Verifying        : util-linux-core-2.38.1-1.fc37.x86_64               145/152 
  Verifying        : which-2.21-35.fc37.x86_64                          146/152 
  Verifying        : xxhash-libs-0.8.1-3.fc37.x86_64                    147/152 
  Verifying        : xz-5.2.5-10.fc37.x86_64                            148/152 
  Verifying        : xz-libs-5.2.5-10.fc37.x86_64                       149/152 
  Verifying        : zip-3.0-33.fc37.x86_64                             150/152 
  Verifying        : zlib-1.2.12-4.fc37.x86_64                          151/152 
  Verifying        : zstd-1.5.2-3.fc37.x86_64                           152/152 
Installed products updated.

Installed:
  alternatives-1.19-3.fc37.x86_64                                               
  ansible-srpm-macros-1-6.fc37.noarch                                           
  audit-libs-3.0.8-3.fc37.x86_64                                                
  authselect-1.4.0-3.fc37.x86_64                                                
  authselect-libs-1.4.0-3.fc37.x86_64                                           
  basesystem-11-14.fc37.noarch                                                  
  bash-5.1.16-3.fc37.x86_64                                                     
  binutils-2.38-24.fc38.x86_64                                                  
  binutils-gold-2.38-24.fc38.x86_64                                             
  bzip2-1.0.8-12.fc37.x86_64                                                    
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-6.fc37.x86_64                                                   
  coreutils-common-9.1-6.fc37.x86_64                                            
  cpio-2.13-13.fc37.x86_64                                                      
  cracklib-2.9.6-28.fc36.x86_64                                                 
  crypto-policies-20220802-1.gita99dfd2.fc37.noarch                             
  curl-7.84.0-2.fc37.x86_64                                                     
  cyrus-sasl-lib-2.1.28-7.fc37.x86_64                                           
  debugedit-5.0-5.fc37.x86_64                                                   
  diffutils-3.8-3.fc37.x86_64                                                   
  dwz-0.14-7.fc37.x86_64                                                        
  ed-1.18-2.fc37.x86_64                                                         
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.187-6.fc37.x86_64                                                  
  elfutils-debuginfod-client-0.187-6.fc37.x86_64                                
  elfutils-default-yama-scope-0.187-6.fc37.noarch                               
  elfutils-libelf-0.187-6.fc37.x86_64                                           
  elfutils-libs-0.187-6.fc37.x86_64                                             
  fedora-gpg-keys-38-0.2.noarch                                                 
  fedora-release-38-0.2.noarch                                                  
  fedora-release-common-38-0.2.noarch                                           
  fedora-release-identity-basic-38-0.2.noarch                                   
  fedora-repos-38-0.2.noarch                                                    
  fedora-repos-rawhide-38-0.2.noarch                                            
  file-5.42-4.fc37.x86_64                                                       
  file-libs-5.42-4.fc37.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  fonts-srpm-macros-1:2.0.5-8.fc37.noarch                                       
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdb-minimal-12.1-4.fc37.x86_64                                                
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36-1.fc37.x86_64                                                      
  glibc-common-2.36-1.fc37.x86_64                                               
  glibc-gconv-extra-2.36-1.fc37.x86_64                                          
  glibc-minimal-langpack-2.36-1.fc37.x86_64                                     
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.1.0-4.fc37.noarch                                            
  grep-3.7-4.fc37.x86_64                                                        
  gzip-1.12-2.fc37.x86_64                                                       
  info-6.8-4.fc37.x86_64                                                        
  jansson-2.13.1-5.fc37.x86_64                                                  
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.19.2-11.fc37.1.x86_64                                             
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-2.fc37.x86_64                                                
  libattr-2.5.1-5.fc37.x86_64                                                   
  libblkid-2.38.1-1.fc37.x86_64                                                 
  libbrotli-1.0.9-9.fc37.x86_64                                                 
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-3.fc37.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcurl-7.84.0-2.fc37.x86_64                                                  
  libdb-5.3.28-53.fc37.x86_64                                                   
  libeconf-0.4.0-4.fc37.x86_64                                                  
  libevent-2.1.12-7.fc37.x86_64                                                 
  libfdisk-2.38.1-1.fc37.x86_64                                                 
  libffi-3.4.2-9.fc37.x86_64                                                    
  libgcc-12.1.1-4.fc38.x86_64                                                   
  libgomp-12.1.1-4.fc38.x86_64                                                  
  libidn2-2.3.3-2.fc37.x86_64                                                   
  libmount-2.38.1-1.fc37.x86_64                                                 
  libnghttp2-1.48.0-2.fc37.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpkgconf-1.8.0-3.fc37.x86_64                                                
  libpsl-0.21.1-6.fc37.x86_64                                                   
  libpwquality-1.4.4-11.fc37.x86_64                                             
  libselinux-3.4-5.fc37.x86_64                                                  
  libsemanage-3.4-5.fc37.x86_64                                                 
  libsepol-3.4-3.fc37.x86_64                                                    
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-1.fc37.x86_64                                             
  libssh-0.9.6-5.fc37.x86_64                                                    
  libssh-config-0.9.6-5.fc37.noarch                                             
  libstdc++-12.1.1-4.fc38.x86_64                                                
  libtasn1-4.18.0-3.fc37.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libutempter-1.2.1-7.fc37.x86_64                                               
  libuuid-2.38.1-1.fc37.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.28-3.fc38.x86_64                                                
  libxml2-2.9.14-3.fc37.x86_64                                                  
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-4.fc37.x86_64                                                  
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc37.x86_64                                                  
  mpfr-4.1.0-10.fc37.x86_64                                                     
  ncurses-base-6.3-3.20220501.fc37.noarch                                       
  ncurses-libs-6.3-3.20220501.fc37.x86_64                                       
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.2-5.fc38.x86_64                                                  
  openssl-libs-1:3.0.5-2.fc37.x86_64                                            
  p11-kit-0.24.1-3.fc37.x86_64                                                  
  p11-kit-trust-0.24.1-3.fc37.x86_64                                            
  package-notes-srpm-macros-0.4-16.fc37.noarch                                  
  pam-1.5.2-14.fc37.x86_64                                                      
  pam-libs-1.5.2-14.fc37.x86_64                                                 
  patch-2.7.6-17.fc37.x86_64                                                    
  pcre-8.45-1.fc37.2.x86_64                                                     
  pcre2-10.40-1.fc37.1.x86_64                                                   
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  perl-srpm-macros-1-46.fc37.noarch                                             
  pkgconf-1.8.0-3.fc37.x86_64                                                   
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.x86_64                                        
  popt-1.19~rc1-3.fc37.x86_64                                                   
  publicsuffix-list-dafsa-20210518-5.fc37.noarch                                
  python-srpm-macros-3.11-4.fc37.noarch                                         
  qt5-srpm-macros-5.15.5-2.fc37.noarch                                          
  readline-8.1-7.fc37.x86_64                                                    
  redhat-rpm-config-227-1.fc37.noarch                                           
  rpm-4.18.0-0.beta1.4.fc37.x86_64                                              
  rpm-build-4.18.0-0.beta1.4.fc37.x86_64                                        
  rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64                                   
  rpm-libs-4.18.0-0.beta1.4.fc37.x86_64                                         
  rpmautospec-rpm-macros-0.3.0-1.fc37.noarch                                    
  rust-srpm-macros-22-1.fc37.noarch                                             
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.1-2.fc37.noarch                                                    
  shadow-utils-2:4.11.1-4.fc37.x86_64                                           
  sqlite-libs-3.39.2-2.fc37.x86_64                                              
  systemd-libs-251.4-51.fc37.x86_64                                             
  tar-2:1.34-3.fc36.x86_64                                                      
  tzdata-2022a-4.fc37.noarch                                                    
  unzip-6.0-58.fc37.x86_64                                                      
  util-linux-2.38.1-1.fc37.x86_64                                               
  util-linux-core-2.38.1-1.fc37.x86_64                                          
  which-2.21-35.fc37.x86_64                                                     
  xxhash-libs-0.8.1-3.fc37.x86_64                                               
  xz-5.2.5-10.fc37.x86_64                                                       
  xz-libs-5.2.5-10.fc37.x86_64                                                  
  zip-3.0-33.fc37.x86_64                                                        
  zlib-1.2.12-4.fc37.x86_64                                                     
  zstd-1.5.2-3.fc37.x86_64                                                      

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libmount-2.38.1-1.fc37.x86_64
libsepol-3.4-3.fc37.x86_64
go-srpm-macros-3.1.0-4.fc37.noarch
tzdata-2022a-4.fc37.noarch
libverto-0.3.2-4.fc37.x86_64
rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64
libgomp-12.1.1-4.fc38.x86_64
libselinux-3.4-5.fc37.x86_64
rpm-libs-4.18.0-0.beta1.4.fc37.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
efi-srpm-macros-5-6.fc37.noarch
cracklib-2.9.6-28.fc36.x86_64
libattr-2.5.1-5.fc37.x86_64
rpm-build-4.18.0-0.beta1.4.fc37.x86_64
libuuid-2.38.1-1.fc37.x86_64
p11-kit-0.24.1-3.fc37.x86_64
coreutils-common-9.1-6.fc37.x86_64
libacl-2.3.1-4.fc37.x86_64
which-2.21-35.fc37.x86_64
pam-libs-1.5.2-14.fc37.x86_64
fedora-gpg-keys-38-0.2.noarch
libidn2-2.3.3-2.fc37.x86_64
bash-5.1.16-3.fc37.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
dwz-0.14-7.fc37.x86_64
libzstd-1.5.2-3.fc37.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
publicsuffix-list-dafsa-20210518-5.fc37.noarch
bzip2-1.0.8-12.fc37.x86_64
lua-libs-5.4.4-4.fc37.x86_64
binutils-gold-2.38-24.fc38.x86_64
libpkgconf-1.8.0-3.fc37.x86_64
findutils-4.9.0-2.fc37.x86_64
systemd-libs-251.4-51.fc37.x86_64
libtasn1-4.18.0-3.fc37.x86_64
libfdisk-2.38.1-1.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
libxml2-2.9.14-3.fc37.x86_64
rpmautospec-rpm-macros-0.3.0-1.fc37.noarch
fonts-srpm-macros-2.0.5-8.fc37.noarch
pcre2-syntax-10.40-1.fc37.1.noarch
libbrotli-1.0.9-9.fc37.x86_64
pkgconf-1.8.0-3.fc37.x86_64
krb5-libs-1.19.2-11.fc37.1.x86_64
xz-5.2.5-10.fc37.x86_64
libutempter-1.2.1-7.fc37.x86_64
libsemanage-3.4-5.fc37.x86_64
gmp-6.2.1-3.fc37.x86_64
zstd-1.5.2-3.fc37.x86_64
mpfr-4.1.0-10.fc37.x86_64
gdb-minimal-12.1-4.fc37.x86_64
debugedit-5.0-5.fc37.x86_64
grep-3.7-4.fc37.x86_64
ocaml-srpm-macros-7-2.fc37.noarch
elfutils-libelf-0.187-6.fc37.x86_64
libcap-2.48-5.fc37.x86_64
libpsl-0.21.1-6.fc37.x86_64
fedora-release-common-38-0.2.noarch
filesystem-3.18-2.fc37.x86_64
file-libs-5.42-4.fc37.x86_64
libnghttp2-1.48.0-2.fc37.x86_64
libsigsegv-2.14-3.fc37.x86_64
libtirpc-1.3.3-0.fc37.x86_64
elfutils-debuginfod-client-0.187-6.fc37.x86_64
xz-libs-5.2.5-10.fc37.x86_64
libblkid-2.38.1-1.fc37.x86_64
gpg-pubkey-eb10b464-6202d9c6
patch-2.7.6-17.fc37.x86_64
tar-1.34-3.fc36.x86_64
glibc-gconv-extra-2.36-1.fc37.x86_64
libnsl2-2.0.0-4.fc37.x86_64
unzip-6.0-58.fc37.x86_64
fpc-srpm-macros-1.3-6.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
setup-2.14.1-2.fc37.noarch
libpwquality-1.4.4-11.fc37.x86_64
libevent-2.1.12-7.fc37.x86_64
fedora-release-38-0.2.noarch
readline-8.1-7.fc37.x86_64
rpm-4.18.0-0.beta1.4.fc37.x86_64
ncurses-libs-6.3-3.20220501.fc37.x86_64
gpg-pubkey-5323552a-6112bcdc
shadow-utils-4.11.1-4.fc37.x86_64
elfutils-libs-0.187-6.fc37.x86_64
zlib-1.2.12-4.fc37.x86_64
util-linux-2.38.1-1.fc37.x86_64
rust-srpm-macros-22-1.fc37.noarch
python-srpm-macros-3.11-4.fc37.noarch
openssl-libs-3.0.5-2.fc37.x86_64
popt-1.19~rc1-3.fc37.x86_64
libsmartcols-2.38.1-1.fc37.x86_64
libssh-0.9.6-5.fc37.x86_64
glibc-2.36-1.fc37.x86_64
libstdc++-12.1.1-4.fc38.x86_64
util-linux-core-2.38.1-1.fc37.x86_64
fedora-repos-38-0.2.noarch
zip-3.0-33.fc37.x86_64
ed-1.18-2.fc37.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
gdbm-libs-1.23-2.fc37.x86_64
qt5-srpm-macros-5.15.5-2.fc37.noarch
libssh-config-0.9.6-5.fc37.noarch
crypto-policies-20220802-1.gita99dfd2.fc37.noarch
cyrus-sasl-lib-2.1.28-7.fc37.x86_64
authselect-libs-1.4.0-3.fc37.x86_64
libcom_err-1.46.5-3.fc37.x86_64
libxcrypt-4.4.28-3.fc38.x86_64
binutils-2.38-24.fc38.x86_64
perl-srpm-macros-1-46.fc37.noarch
redhat-rpm-config-227-1.fc37.noarch
info-6.8-4.fc37.x86_64
gzip-1.12-2.fc37.x86_64
ansible-srpm-macros-1-6.fc37.noarch
pam-1.5.2-14.fc37.x86_64
libeconf-0.4.0-4.fc37.x86_64
libcurl-7.84.0-2.fc37.x86_64
glibc-minimal-langpack-2.36-1.fc37.x86_64
basesystem-11-14.fc37.noarch
libffi-3.4.2-9.fc37.x86_64
authselect-1.4.0-3.fc37.x86_64
elfutils-default-yama-scope-0.187-6.fc37.noarch
glibc-common-2.36-1.fc37.x86_64
lua-srpm-macros-1-7.fc37.noarch
sqlite-libs-3.39.2-2.fc37.x86_64
cpio-2.13-13.fc37.x86_64
ncurses-base-6.3-3.20220501.fc37.noarch
alternatives-1.19-3.fc37.x86_64
sed-4.8-11.fc37.x86_64
p11-kit-trust-0.24.1-3.fc37.x86_64
fedora-repos-rawhide-38-0.2.noarch
libdb-5.3.28-53.fc37.x86_64
gawk-5.1.1-4.fc37.x86_64
pcre2-10.40-1.fc37.1.x86_64
openldap-2.6.2-5.fc38.x86_64
libgcc-12.1.1-4.fc38.x86_64
libcap-ng-0.8.3-3.fc37.x86_64
elfutils-0.187-6.fc37.x86_64
package-notes-srpm-macros-0.4-16.fc37.noarch
coreutils-9.1-6.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
fedora-release-identity-basic-38-0.2.noarch
diffutils-3.8-3.fc37.x86_64
jansson-2.13.1-5.fc37.x86_64
libarchive-3.6.1-2.fc37.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
curl-7.84.0-2.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
gnat-srpm-macros-4-16.fc37.noarch
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
file-5.42-4.fc37.x86_64
lz4-libs-1.9.3-5.fc37.x86_64
audit-libs-3.0.8-3.fc37.x86_64
pcre-8.45-1.fc37.2.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1598486400
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-5.fc38.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-k7gkwedb/mmseq/mmseq.spec) Config(child) 0 minutes 35 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/mmseq-1.0.11-5.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660558474.901174 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-5.fc38.src.rpm)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  55 kB/s | 3.3 kB     00:00    
fedora                                          714 kB/s |  17 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for mmseq-1.0.11-5.fc38.src.rpm
Start: build setup for mmseq-1.0.11-5.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1598486400
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-5.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  90 kB/s | 3.3 kB     00:00    
fedora                                          617 kB/s |  17 kB     00:00    
Dependencies resolved.
================================================================================
 Package                      Arch    Version                  Repository  Size
================================================================================
Installing:
 armadillo-devel              x86_64  10.8.2-2.fc37            fedora     2.2 M
 boost-devel                  x86_64  1.78.0-9.fc37            fedora      13 M
 flexiblas-devel              x86_64  3.2.1-2.fc37             fedora     116 k
 gcc-c++                      x86_64  12.1.1-4.fc38            fedora      13 M
 gsl-devel                    x86_64  2.6-7.fc37               fedora     634 k
 htslib-devel                 x86_64  1.15.1-1.fc38            copr_base  100 k
 perl-generators              noarch  1.13-8.fc37              fedora      16 k
 zlib-devel                   x86_64  1.2.12-4.fc37            fedora      44 k
Installing dependencies:
 SuperLU                      x86_64  5.3.0-3.fc37             fedora     187 k
 SuperLU-devel                x86_64  5.3.0-3.fc37             fedora      27 k
 annobin-docs                 noarch  10.81-1.fc38             fedora      91 k
 annobin-plugin-gcc           x86_64  10.81-1.fc38             fedora     882 k
 armadillo                    x86_64  10.8.2-2.fc37            fedora      35 k
 arpack                       x86_64  3.8.0-5.fc37             fedora     208 k
 arpack-devel                 x86_64  3.8.0-5.fc37             fedora      14 k
 autoconf                     noarch  2.71-3.fc37              fedora     733 k
 automake                     noarch  1.16.5-9.fc37            fedora     696 k
 boost                        x86_64  1.78.0-9.fc37            fedora      14 k
 boost-atomic                 x86_64  1.78.0-9.fc37            fedora      20 k
 boost-chrono                 x86_64  1.78.0-9.fc37            fedora      27 k
 boost-container              x86_64  1.78.0-9.fc37            fedora      40 k
 boost-context                x86_64  1.78.0-9.fc37            fedora      17 k
 boost-contract               x86_64  1.78.0-9.fc37            fedora      47 k
 boost-coroutine              x86_64  1.78.0-9.fc37            fedora      22 k
 boost-date-time              x86_64  1.78.0-9.fc37            fedora      16 k
 boost-fiber                  x86_64  1.78.0-9.fc37            fedora      42 k
 boost-filesystem             x86_64  1.78.0-9.fc37            fedora      66 k
 boost-graph                  x86_64  1.78.0-9.fc37            fedora     149 k
 boost-iostreams              x86_64  1.78.0-9.fc37            fedora      42 k
 boost-json                   x86_64  1.78.0-9.fc37            fedora     111 k
 boost-locale                 x86_64  1.78.0-9.fc37            fedora     218 k
 boost-log                    x86_64  1.78.0-9.fc37            fedora     483 k
 boost-math                   x86_64  1.78.0-9.fc37            fedora     204 k
 boost-nowide                 x86_64  1.78.0-9.fc37            fedora      21 k
 boost-numpy3                 x86_64  1.78.0-9.fc37            fedora      30 k
 boost-program-options        x86_64  1.78.0-9.fc37            fedora     107 k
 boost-python3                x86_64  1.78.0-9.fc37            fedora      96 k
 boost-random                 x86_64  1.78.0-9.fc37            fedora      26 k
 boost-regex                  x86_64  1.78.0-9.fc37            fedora     113 k
 boost-serialization          x86_64  1.78.0-9.fc37            fedora     134 k
 boost-stacktrace             x86_64  1.78.0-9.fc37            fedora      30 k
 boost-system                 x86_64  1.78.0-9.fc37            fedora      16 k
 boost-test                   x86_64  1.78.0-9.fc37            fedora     234 k
 boost-thread                 x86_64  1.78.0-9.fc37            fedora      59 k
 boost-timer                  x86_64  1.78.0-9.fc37            fedora      26 k
 boost-type_erasure           x86_64  1.78.0-9.fc37            fedora      35 k
 boost-wave                   x86_64  1.78.0-9.fc37            fedora     204 k
 cmake-filesystem             x86_64  3.24.0-1.fc38            fedora      16 k
 cpp                          x86_64  12.1.1-4.fc38            fedora      11 M
 emacs-filesystem             noarch  1:28.1-3.fc37            fedora     9.5 k
 expat                        x86_64  2.4.8-2.fc37             fedora     110 k
 flexiblas                    x86_64  3.2.1-2.fc37             fedora      33 k
 flexiblas-netlib             x86_64  3.2.1-2.fc37             fedora     3.1 M
 flexiblas-netlib64           x86_64  3.2.1-2.fc37             fedora     3.0 M
 flexiblas-openblas-openmp    x86_64  3.2.1-2.fc37             fedora      17 k
 flexiblas-openblas-openmp64  x86_64  3.2.1-2.fc37             fedora      17 k
 gc                           x86_64  8.0.6-4.fc37             fedora     103 k
 gcc                          x86_64  12.1.1-4.fc38            fedora      33 M
 gcc-gfortran                 x86_64  12.1.1-4.fc38            fedora      12 M
 gcc-plugin-annobin           x86_64  12.1.1-4.fc38            fedora      50 k
 glibc-devel                  x86_64  2.36-1.fc37              fedora      96 k
 glibc-headers-x86            noarch  2.36-1.fc37              fedora     574 k
 groff-base                   x86_64  1.22.4-10.fc37           fedora     1.1 M
 gsl                          x86_64  2.6-7.fc37               fedora     1.1 M
 guile22                      x86_64  2.2.7-6.fc37             fedora     6.5 M
 hdf5                         x86_64  1.12.1-10.fc37           fedora     2.3 M
 hdf5-devel                   x86_64  1.12.1-10.fc37           fedora     1.3 M
 htslib                       x86_64  1.15.1-1.fc38            copr_base  487 k
 kernel-headers               x86_64  5.19.0-1.fc37            fedora     1.5 M
 libaec                       x86_64  1.0.6-3.fc37             fedora      41 k
 libaec-devel                 x86_64  1.0.6-3.fc37             fedora      12 k
 libb2                        x86_64  0.98.1-7.fc37            fedora      25 k
 libgfortran                  x86_64  12.1.1-4.fc38            fedora     898 k
 libicu                       x86_64  71.1-1.fc37              fedora      10 M
 libicu-devel                 x86_64  71.1-1.fc37              fedora     916 k
 libmpc                       x86_64  1.2.1-5.fc37             fedora      61 k
 libquadmath                  x86_64  12.1.1-4.fc38            fedora     199 k
 libquadmath-devel            x86_64  12.1.1-4.fc38            fedora      40 k
 libstdc++-devel              x86_64  12.1.1-4.fc38            fedora     2.5 M
 libtool-ltdl                 x86_64  2.4.7-2.fc37             fedora      37 k
 libxcrypt-devel              x86_64  4.4.28-3.fc38            fedora      28 k
 m4                           x86_64  1.4.19-4.fc37            fedora     303 k
 make                         x86_64  1:4.3-11.fc37            fedora     542 k
 mpdecimal                    x86_64  2.5.1-4.fc37             fedora     102 k
 ncurses                      x86_64  6.3-3.20220501.fc37      fedora     409 k
 openblas                     x86_64  0.3.20-2.fc37            fedora      34 k
 openblas-openmp              x86_64  0.3.20-2.fc37            fedora     5.1 M
 openblas-openmp64            x86_64  0.3.20-2.fc37            fedora     4.9 M
 perl-B                       x86_64  1.83-491.fc37            fedora     186 k
 perl-Carp                    noarch  1.52-489.fc37            fedora      29 k
 perl-Class-Struct            noarch  0.66-491.fc37            fedora      26 k
 perl-Data-Dumper             x86_64  2.184-490.fc37           fedora      56 k
 perl-DynaLoader              x86_64  1.52-491.fc37            fedora      30 k
 perl-Encode                  x86_64  4:3.19-491.fc37          fedora     1.7 M
 perl-Errno                   x86_64  1.36-491.fc37            fedora      19 k
 perl-Exporter                noarch  5.77-489.fc37            fedora      31 k
 perl-Fcntl                   x86_64  1.15-491.fc37            fedora      25 k
 perl-Fedora-VSP              noarch  0.001-29.fc37            fedora      23 k
 perl-File-Basename           noarch  2.85-491.fc37            fedora      22 k
 perl-File-Compare            noarch  1.100.700-491.fc37       fedora      18 k
 perl-File-Copy               noarch  2.39-491.fc37            fedora      24 k
 perl-File-Find               noarch  1.40-491.fc37            fedora      30 k
 perl-File-Path               noarch  2.18-489.fc37            fedora      35 k
 perl-File-Temp               noarch  1:0.231.100-489.fc37     fedora      59 k
 perl-File-stat               noarch  1.12-491.fc37            fedora      22 k
 perl-Getopt-Long             noarch  1:2.52-489.fc37          fedora      60 k
 perl-Getopt-Std              noarch  1.13-491.fc37            fedora      20 k
 perl-HTTP-Tiny               noarch  0.082-1.fc37             fedora      55 k
 perl-IO                      x86_64  1.50-491.fc37            fedora      96 k
 perl-IPC-Open3               noarch  1.22-491.fc37            fedora      27 k
 perl-MIME-Base64             x86_64  3.16-489.fc37            fedora      30 k
 perl-POSIX                   x86_64  2.03-491.fc37            fedora     102 k
 perl-PathTools               x86_64  3.84-489.fc37            fedora      89 k
 perl-Pod-Escapes             noarch  1:1.07-489.fc37          fedora      20 k
 perl-Pod-Perldoc             noarch  3.28.01-490.fc37         fedora      90 k
 perl-Pod-Simple              noarch  1:3.43-490.fc37          fedora     225 k
 perl-Pod-Usage               noarch  4:2.03-3.fc37            fedora      40 k
 perl-Scalar-List-Utils       x86_64  5:1.63-489.fc38          fedora      72 k
 perl-SelectSaver             noarch  1.02-491.fc37            fedora      16 k
 perl-Socket                  x86_64  4:2.035-2.fc37           fedora      55 k
 perl-Storable                x86_64  1:3.26-489.fc37          fedora      97 k
 perl-Symbol                  noarch  1.09-491.fc37            fedora      19 k
 perl-Term-ANSIColor          noarch  5.01-490.fc37            fedora      48 k
 perl-Term-Cap                noarch  1.17-489.fc37            fedora      22 k
 perl-Text-ParseWords         noarch  3.31-489.fc37            fedora      16 k
 perl-Text-Tabs+Wrap          noarch  2021.0814-489.fc37       fedora      22 k
 perl-Thread-Queue            noarch  3.14-489.fc37            fedora      21 k
 perl-Time-Local              noarch  2:1.300-489.fc37         fedora      33 k
 perl-constant                noarch  1.33-490.fc37            fedora      23 k
 perl-if                      noarch  0.61.000-491.fc37        fedora      18 k
 perl-interpreter             x86_64  4:5.36.0-491.fc37        fedora      76 k
 perl-libs                    x86_64  4:5.36.0-491.fc37        fedora     2.2 M
 perl-macros                  noarch  4:5.36.0-491.fc37        fedora      16 k
 perl-mro                     x86_64  1.26-491.fc37            fedora      33 k
 perl-overload                noarch  1.35-491.fc37            fedora      50 k
 perl-overloading             noarch  0.02-491.fc37            fedora      17 k
 perl-parent                  noarch  1:0.238-489.fc37         fedora      14 k
 perl-podlators               noarch  1:4.14-489.fc37          fedora     116 k
 perl-subs                    noarch  1.04-491.fc37            fedora      16 k
 perl-threads                 x86_64  1:2.27-489.fc37          fedora      57 k
 perl-threads-shared          x86_64  1.64-489.fc37            fedora      44 k
 perl-vars                    noarch  1.05-491.fc37            fedora      17 k
 python-pip-wheel             noarch  22.2-1.fc37              fedora     1.4 M
 python-setuptools-wheel      noarch  62.6.0-2.fc37            fedora     712 k
 python3                      x86_64  3.11.0~rc1-1.fc38        fedora      27 k
 python3-libs                 x86_64  3.11.0~rc1-1.fc38        fedora     9.6 M
 python3-numpy                x86_64  1:1.22.0-7.fc37          fedora     7.3 M

Transaction Summary
================================================================================
Install  147 Packages

Total download size: 163 M
Installed size: 695 M
Downloading Packages:
(1/147): htslib-devel-1.15.1-1.fc38.x86_64.rpm  1.6 MB/s | 100 kB     00:00    
(2/147): htslib-1.15.1-1.fc38.x86_64.rpm        5.4 MB/s | 487 kB     00:00    
(3/147): SuperLU-devel-5.3.0-3.fc37.x86_64.rpm   84 kB/s |  27 kB     00:00    
(4/147): annobin-docs-10.81-1.fc38.noarch.rpm   231 kB/s |  91 kB     00:00    
(5/147): SuperLU-5.3.0-3.fc37.x86_64.rpm        380 kB/s | 187 kB     00:00    
(6/147): armadillo-10.8.2-2.fc37.x86_64.rpm      98 kB/s |  35 kB     00:00    
(7/147): annobin-plugin-gcc-10.81-1.fc38.x86_64 1.2 MB/s | 882 kB     00:00    
(8/147): arpack-devel-3.8.0-5.fc37.x86_64.rpm   166 kB/s |  14 kB     00:00    
(9/147): arpack-3.8.0-5.fc37.x86_64.rpm         438 kB/s | 208 kB     00:00    
(10/147): armadillo-devel-10.8.2-2.fc37.x86_64. 2.6 MB/s | 2.2 MB     00:00    
(11/147): boost-1.78.0-9.fc37.x86_64.rpm        113 kB/s |  14 kB     00:00    
(12/147): autoconf-2.71-3.fc37.noarch.rpm       2.0 MB/s | 733 kB     00:00    
(13/147): boost-atomic-1.78.0-9.fc37.x86_64.rpm 176 kB/s |  20 kB     00:00    
(14/147): boost-chrono-1.78.0-9.fc37.x86_64.rpm 220 kB/s |  27 kB     00:00    
(15/147): automake-1.16.5-9.fc37.noarch.rpm     1.9 MB/s | 696 kB     00:00    
(16/147): boost-container-1.78.0-9.fc37.x86_64. 274 kB/s |  40 kB     00:00    
(17/147): boost-context-1.78.0-9.fc37.x86_64.rp 162 kB/s |  17 kB     00:00    
(18/147): boost-coroutine-1.78.0-9.fc37.x86_64. 227 kB/s |  22 kB     00:00    
(19/147): boost-contract-1.78.0-9.fc37.x86_64.r 311 kB/s |  47 kB     00:00    
(20/147): boost-date-time-1.78.0-9.fc37.x86_64. 118 kB/s |  16 kB     00:00    
(21/147): boost-fiber-1.78.0-9.fc37.x86_64.rpm  124 kB/s |  42 kB     00:00    
(22/147): boost-filesystem-1.78.0-9.fc37.x86_64 175 kB/s |  66 kB     00:00    
(23/147): boost-graph-1.78.0-9.fc37.x86_64.rpm  349 kB/s | 149 kB     00:00    
(24/147): boost-iostreams-1.78.0-9.fc37.x86_64. 127 kB/s |  42 kB     00:00    
(25/147): boost-json-1.78.0-9.fc37.x86_64.rpm   281 kB/s | 111 kB     00:00    
(26/147): boost-locale-1.78.0-9.fc37.x86_64.rpm 488 kB/s | 218 kB     00:00    
(27/147): boost-devel-1.78.0-9.fc37.x86_64.rpm   11 MB/s |  13 MB     00:01    
(28/147): boost-nowide-1.78.0-9.fc37.x86_64.rpm  57 kB/s |  21 kB     00:00    
(29/147): boost-log-1.78.0-9.fc37.x86_64.rpm    859 kB/s | 483 kB     00:00    
(30/147): boost-math-1.78.0-9.fc37.x86_64.rpm   404 kB/s | 204 kB     00:00    
(31/147): boost-numpy3-1.78.0-9.fc37.x86_64.rpm  78 kB/s |  30 kB     00:00    
(32/147): boost-program-options-1.78.0-9.fc37.x 232 kB/s | 107 kB     00:00    
(33/147): boost-python3-1.78.0-9.fc37.x86_64.rp 215 kB/s |  96 kB     00:00    
(34/147): boost-random-1.78.0-9.fc37.x86_64.rpm  86 kB/s |  26 kB     00:00    
(35/147): boost-regex-1.78.0-9.fc37.x86_64.rpm  249 kB/s | 113 kB     00:00    
(36/147): boost-serialization-1.78.0-9.fc37.x86 258 kB/s | 134 kB     00:00    
(37/147): boost-stacktrace-1.78.0-9.fc37.x86_64  74 kB/s |  30 kB     00:00    
(38/147): boost-system-1.78.0-9.fc37.x86_64.rpm  41 kB/s |  16 kB     00:00    
(39/147): boost-test-1.78.0-9.fc37.x86_64.rpm   330 kB/s | 234 kB     00:00    
(40/147): boost-timer-1.78.0-9.fc37.x86_64.rpm   65 kB/s |  26 kB     00:00    
(41/147): boost-thread-1.78.0-9.fc37.x86_64.rpm  84 kB/s |  59 kB     00:00    
(42/147): cmake-filesystem-3.24.0-1.fc38.x86_64  43 kB/s |  16 kB     00:00    
(43/147): boost-type_erasure-1.78.0-9.fc37.x86_  86 kB/s |  35 kB     00:00    
(44/147): boost-wave-1.78.0-9.fc37.x86_64.rpm   426 kB/s | 204 kB     00:00    
(45/147): emacs-filesystem-28.1-3.fc37.noarch.r  35 kB/s | 9.5 kB     00:00    
(46/147): expat-2.4.8-2.fc37.x86_64.rpm         272 kB/s | 110 kB     00:00    
(47/147): flexiblas-3.2.1-2.fc37.x86_64.rpm      92 kB/s |  33 kB     00:00    
(48/147): flexiblas-devel-3.2.1-2.fc37.x86_64.r 229 kB/s | 116 kB     00:00    
(49/147): cpp-12.1.1-4.fc38.x86_64.rpm          9.6 MB/s |  11 MB     00:01    
(50/147): flexiblas-openblas-openmp-3.2.1-2.fc3  38 kB/s |  17 kB     00:00    
(51/147): flexiblas-openblas-openmp64-3.2.1-2.f  50 kB/s |  17 kB     00:00    
(52/147): gc-8.0.6-4.fc37.x86_64.rpm            260 kB/s | 103 kB     00:00    
(53/147): gcc-12.1.1-4.fc38.x86_64.rpm           25 MB/s |  33 MB     00:01    
(54/147): gcc-c++-12.1.1-4.fc38.x86_64.rpm       12 MB/s |  13 MB     00:01    
(55/147): gcc-gfortran-12.1.1-4.fc38.x86_64.rpm  11 MB/s |  12 MB     00:01    
(56/147): flexiblas-netlib-3.2.1-2.fc37.x86_64. 604 kB/s | 3.1 MB     00:05    
(57/147): gcc-plugin-annobin-12.1.1-4.fc38.x86_ 358 kB/s |  50 kB     00:00    
(58/147): glibc-devel-2.36-1.fc37.x86_64.rpm    490 kB/s |  96 kB     00:00    
(59/147): flexiblas-netlib64-3.2.1-2.fc37.x86_6 574 kB/s | 3.0 MB     00:05    
(60/147): glibc-headers-x86-2.36-1.fc37.noarch. 988 kB/s | 574 kB     00:00    
(61/147): groff-base-1.22.4-10.fc37.x86_64.rpm  1.3 MB/s | 1.1 MB     00:00    
(62/147): gsl-devel-2.6-7.fc37.x86_64.rpm       892 kB/s | 634 kB     00:00    
(63/147): gsl-2.6-7.fc37.x86_64.rpm             1.0 MB/s | 1.1 MB     00:01    
(64/147): hdf5-devel-1.12.1-10.fc37.x86_64.rpm  1.1 MB/s | 1.3 MB     00:01    
(65/147): hdf5-1.12.1-10.fc37.x86_64.rpm        1.4 MB/s | 2.3 MB     00:01    
(66/147): libaec-1.0.6-3.fc37.x86_64.rpm        295 kB/s |  41 kB     00:00    
(67/147): guile22-2.2.7-6.fc37.x86_64.rpm       3.1 MB/s | 6.5 MB     00:02    
(68/147): libaec-devel-1.0.6-3.fc37.x86_64.rpm   43 kB/s |  12 kB     00:00    
(69/147): libb2-0.98.1-7.fc37.x86_64.rpm         83 kB/s |  25 kB     00:00    
(70/147): kernel-headers-5.19.0-1.fc37.x86_64.r 1.9 MB/s | 1.5 MB     00:00    
(71/147): libgfortran-12.1.1-4.fc38.x86_64.rpm  1.0 MB/s | 898 kB     00:00    
(72/147): libicu-devel-71.1-1.fc37.x86_64.rpm   1.1 MB/s | 916 kB     00:00    
(73/147): libmpc-1.2.1-5.fc37.x86_64.rpm        160 kB/s |  61 kB     00:00    
(74/147): libquadmath-12.1.1-4.fc38.x86_64.rpm  400 kB/s | 199 kB     00:00    
(75/147): libquadmath-devel-12.1.1-4.fc38.x86_6 114 kB/s |  40 kB     00:00    
(76/147): libtool-ltdl-2.4.7-2.fc37.x86_64.rpm  107 kB/s |  37 kB     00:00    
(77/147): libxcrypt-devel-4.4.28-3.fc38.x86_64.  92 kB/s |  28 kB     00:00    
(78/147): libicu-71.1-1.fc37.x86_64.rpm         4.6 MB/s |  10 MB     00:02    
(79/147): libstdc++-devel-12.1.1-4.fc38.x86_64. 2.1 MB/s | 2.5 MB     00:01    
(80/147): m4-1.4.19-4.fc37.x86_64.rpm           569 kB/s | 303 kB     00:00    
(81/147): make-4.3-11.fc37.x86_64.rpm           951 kB/s | 542 kB     00:00    
(82/147): mpdecimal-2.5.1-4.fc37.x86_64.rpm     244 kB/s | 102 kB     00:00    
(83/147): openblas-0.3.20-2.fc37.x86_64.rpm     100 kB/s |  34 kB     00:00    
(84/147): ncurses-6.3-3.20220501.fc37.x86_64.rp 770 kB/s | 409 kB     00:00    
(85/147): perl-B-1.83-491.fc37.x86_64.rpm       334 kB/s | 186 kB     00:00    
(86/147): perl-Carp-1.52-489.fc37.noarch.rpm     86 kB/s |  29 kB     00:00    
(87/147): openblas-openmp-0.3.20-2.fc37.x86_64. 4.1 MB/s | 5.1 MB     00:01    
(88/147): openblas-openmp64-0.3.20-2.fc37.x86_6 4.2 MB/s | 4.9 MB     00:01    
(89/147): perl-Class-Struct-0.66-491.fc37.noarc  87 kB/s |  26 kB     00:00    
(90/147): perl-Data-Dumper-2.184-490.fc37.x86_6 154 kB/s |  56 kB     00:00    
(91/147): perl-DynaLoader-1.52-491.fc37.x86_64.  92 kB/s |  30 kB     00:00    
(92/147): perl-Errno-1.36-491.fc37.x86_64.rpm    50 kB/s |  19 kB     00:00    
(93/147): perl-Exporter-5.77-489.fc37.noarch.rp  69 kB/s |  31 kB     00:00    
(94/147): perl-Fcntl-1.15-491.fc37.x86_64.rpm    80 kB/s |  25 kB     00:00    
(95/147): perl-Fedora-VSP-0.001-29.fc37.noarch.  69 kB/s |  23 kB     00:00    
(96/147): perl-Encode-3.19-491.fc37.x86_64.rpm  1.4 MB/s | 1.7 MB     00:01    
(97/147): perl-File-Basename-2.85-491.fc37.noar  72 kB/s |  22 kB     00:00    
(98/147): perl-File-Compare-1.100.700-491.fc37.  59 kB/s |  18 kB     00:00    
(99/147): perl-File-Copy-2.39-491.fc37.noarch.r  74 kB/s |  24 kB     00:00    
(100/147): perl-File-Find-1.40-491.fc37.noarch.  81 kB/s |  30 kB     00:00    
(101/147): perl-File-Path-2.18-489.fc37.noarch. 102 kB/s |  35 kB     00:00    
(102/147): perl-File-stat-1.12-491.fc37.noarch.  70 kB/s |  22 kB     00:00    
(103/147): perl-File-Temp-0.231.100-489.fc37.no 157 kB/s |  59 kB     00:00    
(104/147): perl-Getopt-Long-2.52-489.fc37.noarc 158 kB/s |  60 kB     00:00    
(105/147): perl-Getopt-Std-1.13-491.fc37.noarch  63 kB/s |  20 kB     00:00    
(106/147): perl-HTTP-Tiny-0.082-1.fc37.noarch.r 159 kB/s |  55 kB     00:00    
(107/147): perl-IO-1.50-491.fc37.x86_64.rpm     533 kB/s |  96 kB     00:00    
(108/147): perl-IPC-Open3-1.22-491.fc37.noarch. 276 kB/s |  27 kB     00:00    
(109/147): perl-MIME-Base64-3.16-489.fc37.x86_6 277 kB/s |  30 kB     00:00    
(110/147): perl-Pod-Escapes-1.07-489.fc37.noarc 162 kB/s |  20 kB     00:00    
(111/147): perl-PathTools-3.84-489.fc37.x86_64. 471 kB/s |  89 kB     00:00    
(112/147): perl-POSIX-2.03-491.fc37.x86_64.rpm  447 kB/s | 102 kB     00:00    
(113/147): perl-Pod-Usage-2.03-3.fc37.noarch.rp 207 kB/s |  40 kB     00:00    
(114/147): perl-Pod-Perldoc-3.28.01-490.fc37.no 327 kB/s |  90 kB     00:00    
(115/147): perl-Pod-Simple-3.43-490.fc37.noarch 655 kB/s | 225 kB     00:00    
(116/147): perl-SelectSaver-1.02-491.fc37.noarc 159 kB/s |  16 kB     00:00    
(117/147): perl-Scalar-List-Utils-1.63-489.fc38 392 kB/s |  72 kB     00:00    
(118/147): perl-Socket-2.035-2.fc37.x86_64.rpm  314 kB/s |  55 kB     00:00    
(119/147): perl-Symbol-1.09-491.fc37.noarch.rpm  62 kB/s |  19 kB     00:00    
(120/147): perl-Storable-3.26-489.fc37.x86_64.r 244 kB/s |  97 kB     00:00    
(121/147): perl-Term-ANSIColor-5.01-490.fc37.no 140 kB/s |  48 kB     00:00    
(122/147): perl-Term-Cap-1.17-489.fc37.noarch.r  71 kB/s |  22 kB     00:00    
(123/147): perl-Text-ParseWords-3.31-489.fc37.n  54 kB/s |  16 kB     00:00    
(124/147): perl-Text-Tabs+Wrap-2021.0814-489.fc  72 kB/s |  22 kB     00:00    
(125/147): perl-Thread-Queue-3.14-489.fc37.noar  72 kB/s |  21 kB     00:00    
(126/147): perl-Time-Local-1.300-489.fc37.noarc 101 kB/s |  33 kB     00:00    
(127/147): perl-constant-1.33-490.fc37.noarch.r  76 kB/s |  23 kB     00:00    
(128/147): perl-generators-1.13-8.fc37.noarch.r  46 kB/s |  16 kB     00:00    
(129/147): perl-if-0.61.000-491.fc37.noarch.rpm  56 kB/s |  18 kB     00:00    
(130/147): perl-interpreter-5.36.0-491.fc37.x86 173 kB/s |  76 kB     00:00    
(131/147): perl-macros-5.36.0-491.fc37.noarch.r  50 kB/s |  16 kB     00:00    
(132/147): perl-mro-1.26-491.fc37.x86_64.rpm    111 kB/s |  33 kB     00:00    
(133/147): perl-overload-1.35-491.fc37.noarch.r 139 kB/s |  50 kB     00:00    
(134/147): perl-libs-5.36.0-491.fc37.x86_64.rpm 2.5 MB/s | 2.2 MB     00:00    
(135/147): perl-overloading-0.02-491.fc37.noarc  53 kB/s |  17 kB     00:00    
(136/147): perl-parent-0.238-489.fc37.noarch.rp  52 kB/s |  14 kB     00:00    
(137/147): perl-subs-1.04-491.fc37.noarch.rpm    52 kB/s |  16 kB     00:00    
(138/147): perl-podlators-4.14-489.fc37.noarch. 283 kB/s | 116 kB     00:00    
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  Verifying        : perl-File-Path-2.18-489.fc37.noarch                101/147 
  Verifying        : perl-File-Temp-1:0.231.100-489.fc37.noarch         102/147 
  Verifying        : perl-File-stat-1.12-491.fc37.noarch                103/147 
  Verifying        : perl-Getopt-Long-1:2.52-489.fc37.noarch            104/147 
  Verifying        : perl-Getopt-Std-1.13-491.fc37.noarch               105/147 
  Verifying        : perl-HTTP-Tiny-0.082-1.fc37.noarch                 106/147 
  Verifying        : perl-IO-1.50-491.fc37.x86_64                       107/147 
  Verifying        : perl-IPC-Open3-1.22-491.fc37.noarch                108/147 
  Verifying        : perl-MIME-Base64-3.16-489.fc37.x86_64              109/147 
  Verifying        : perl-POSIX-2.03-491.fc37.x86_64                    110/147 
  Verifying        : perl-PathTools-3.84-489.fc37.x86_64                111/147 
  Verifying        : perl-Pod-Escapes-1:1.07-489.fc37.noarch            112/147 
  Verifying        : perl-Pod-Perldoc-3.28.01-490.fc37.noarch           113/147 
  Verifying        : perl-Pod-Simple-1:3.43-490.fc37.noarch             114/147 
  Verifying        : perl-Pod-Usage-4:2.03-3.fc37.noarch                115/147 
  Verifying        : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64      116/147 
  Verifying        : perl-SelectSaver-1.02-491.fc37.noarch              117/147 
  Verifying        : perl-Socket-4:2.035-2.fc37.x86_64                  118/147 
  Verifying        : perl-Storable-1:3.26-489.fc37.x86_64               119/147 
  Verifying        : perl-Symbol-1.09-491.fc37.noarch                   120/147 
  Verifying        : perl-Term-ANSIColor-5.01-490.fc37.noarch           121/147 
  Verifying        : perl-Term-Cap-1.17-489.fc37.noarch                 122/147 
  Verifying        : perl-Text-ParseWords-3.31-489.fc37.noarch          123/147 
  Verifying        : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch      124/147 
  Verifying        : perl-Thread-Queue-3.14-489.fc37.noarch             125/147 
  Verifying        : perl-Time-Local-2:1.300-489.fc37.noarch            126/147 
  Verifying        : perl-constant-1.33-490.fc37.noarch                 127/147 
  Verifying        : perl-generators-1.13-8.fc37.noarch                 128/147 
  Verifying        : perl-if-0.61.000-491.fc37.noarch                   129/147 
  Verifying        : perl-interpreter-4:5.36.0-491.fc37.x86_64          130/147 
  Verifying        : perl-libs-4:5.36.0-491.fc37.x86_64                 131/147 
  Verifying        : perl-macros-4:5.36.0-491.fc37.noarch               132/147 
  Verifying        : perl-mro-1.26-491.fc37.x86_64                      133/147 
  Verifying        : perl-overload-1.35-491.fc37.noarch                 134/147 
  Verifying        : perl-overloading-0.02-491.fc37.noarch              135/147 
  Verifying        : perl-parent-1:0.238-489.fc37.noarch                136/147 
  Verifying        : perl-podlators-1:4.14-489.fc37.noarch              137/147 
  Verifying        : perl-subs-1.04-491.fc37.noarch                     138/147 
  Verifying        : perl-threads-1:2.27-489.fc37.x86_64                139/147 
  Verifying        : perl-threads-shared-1.64-489.fc37.x86_64           140/147 
  Verifying        : perl-vars-1.05-491.fc37.noarch                     141/147 
  Verifying        : python-pip-wheel-22.2-1.fc37.noarch                142/147 
  Verifying        : python-setuptools-wheel-62.6.0-2.fc37.noarch       143/147 
  Verifying        : python3-3.11.0~rc1-1.fc38.x86_64                   144/147 
  Verifying        : python3-libs-3.11.0~rc1-1.fc38.x86_64              145/147 
  Verifying        : python3-numpy-1:1.22.0-7.fc37.x86_64               146/147 
  Verifying        : zlib-devel-1.2.12-4.fc37.x86_64                    147/147 
Installed products updated.

Installed:
  SuperLU-5.3.0-3.fc37.x86_64                                                   
  SuperLU-devel-5.3.0-3.fc37.x86_64                                             
  annobin-docs-10.81-1.fc38.noarch                                              
  annobin-plugin-gcc-10.81-1.fc38.x86_64                                        
  armadillo-10.8.2-2.fc37.x86_64                                                
  armadillo-devel-10.8.2-2.fc37.x86_64                                          
  arpack-3.8.0-5.fc37.x86_64                                                    
  arpack-devel-3.8.0-5.fc37.x86_64                                              
  autoconf-2.71-3.fc37.noarch                                                   
  automake-1.16.5-9.fc37.noarch                                                 
  boost-1.78.0-9.fc37.x86_64                                                    
  boost-atomic-1.78.0-9.fc37.x86_64                                             
  boost-chrono-1.78.0-9.fc37.x86_64                                             
  boost-container-1.78.0-9.fc37.x86_64                                          
  boost-context-1.78.0-9.fc37.x86_64                                            
  boost-contract-1.78.0-9.fc37.x86_64                                           
  boost-coroutine-1.78.0-9.fc37.x86_64                                          
  boost-date-time-1.78.0-9.fc37.x86_64                                          
  boost-devel-1.78.0-9.fc37.x86_64                                              
  boost-fiber-1.78.0-9.fc37.x86_64                                              
  boost-filesystem-1.78.0-9.fc37.x86_64                                         
  boost-graph-1.78.0-9.fc37.x86_64                                              
  boost-iostreams-1.78.0-9.fc37.x86_64                                          
  boost-json-1.78.0-9.fc37.x86_64                                               
  boost-locale-1.78.0-9.fc37.x86_64                                             
  boost-log-1.78.0-9.fc37.x86_64                                                
  boost-math-1.78.0-9.fc37.x86_64                                               
  boost-nowide-1.78.0-9.fc37.x86_64                                             
  boost-numpy3-1.78.0-9.fc37.x86_64                                             
  boost-program-options-1.78.0-9.fc37.x86_64                                    
  boost-python3-1.78.0-9.fc37.x86_64                                            
  boost-random-1.78.0-9.fc37.x86_64                                             
  boost-regex-1.78.0-9.fc37.x86_64                                              
  boost-serialization-1.78.0-9.fc37.x86_64                                      
  boost-stacktrace-1.78.0-9.fc37.x86_64                                         
  boost-system-1.78.0-9.fc37.x86_64                                             
  boost-test-1.78.0-9.fc37.x86_64                                               
  boost-thread-1.78.0-9.fc37.x86_64                                             
  boost-timer-1.78.0-9.fc37.x86_64                                              
  boost-type_erasure-1.78.0-9.fc37.x86_64                                       
  boost-wave-1.78.0-9.fc37.x86_64                                               
  cmake-filesystem-3.24.0-1.fc38.x86_64                                         
  cpp-12.1.1-4.fc38.x86_64                                                      
  emacs-filesystem-1:28.1-3.fc37.noarch                                         
  expat-2.4.8-2.fc37.x86_64                                                     
  flexiblas-3.2.1-2.fc37.x86_64                                                 
  flexiblas-devel-3.2.1-2.fc37.x86_64                                           
  flexiblas-netlib-3.2.1-2.fc37.x86_64                                          
  flexiblas-netlib64-3.2.1-2.fc37.x86_64                                        
  flexiblas-openblas-openmp-3.2.1-2.fc37.x86_64                                 
  flexiblas-openblas-openmp64-3.2.1-2.fc37.x86_64                               
  gc-8.0.6-4.fc37.x86_64                                                        
  gcc-12.1.1-4.fc38.x86_64                                                      
  gcc-c++-12.1.1-4.fc38.x86_64                                                  
  gcc-gfortran-12.1.1-4.fc38.x86_64                                             
  gcc-plugin-annobin-12.1.1-4.fc38.x86_64                                       
  glibc-devel-2.36-1.fc37.x86_64                                                
  glibc-headers-x86-2.36-1.fc37.noarch                                          
  groff-base-1.22.4-10.fc37.x86_64                                              
  gsl-2.6-7.fc37.x86_64                                                         
  gsl-devel-2.6-7.fc37.x86_64                                                   
  guile22-2.2.7-6.fc37.x86_64                                                   
  hdf5-1.12.1-10.fc37.x86_64                                                    
  hdf5-devel-1.12.1-10.fc37.x86_64                                              
  htslib-1.15.1-1.fc38.x86_64                                                   
  htslib-devel-1.15.1-1.fc38.x86_64                                             
  kernel-headers-5.19.0-1.fc37.x86_64                                           
  libaec-1.0.6-3.fc37.x86_64                                                    
  libaec-devel-1.0.6-3.fc37.x86_64                                              
  libb2-0.98.1-7.fc37.x86_64                                                    
  libgfortran-12.1.1-4.fc38.x86_64                                              
  libicu-71.1-1.fc37.x86_64                                                     
  libicu-devel-71.1-1.fc37.x86_64                                               
  libmpc-1.2.1-5.fc37.x86_64                                                    
  libquadmath-12.1.1-4.fc38.x86_64                                              
  libquadmath-devel-12.1.1-4.fc38.x86_64                                        
  libstdc++-devel-12.1.1-4.fc38.x86_64                                          
  libtool-ltdl-2.4.7-2.fc37.x86_64                                              
  libxcrypt-devel-4.4.28-3.fc38.x86_64                                          
  m4-1.4.19-4.fc37.x86_64                                                       
  make-1:4.3-11.fc37.x86_64                                                     
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  ncurses-6.3-3.20220501.fc37.x86_64                                            
  openblas-0.3.20-2.fc37.x86_64                                                 
  openblas-openmp-0.3.20-2.fc37.x86_64                                          
  openblas-openmp64-0.3.20-2.fc37.x86_64                                        
  perl-B-1.83-491.fc37.x86_64                                                   
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-491.fc37.noarch                                        
  perl-Data-Dumper-2.184-490.fc37.x86_64                                        
  perl-DynaLoader-1.52-491.fc37.x86_64                                          
  perl-Encode-4:3.19-491.fc37.x86_64                                            
  perl-Errno-1.36-491.fc37.x86_64                                               
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-Fcntl-1.15-491.fc37.x86_64                                               
  perl-Fedora-VSP-0.001-29.fc37.noarch                                          
  perl-File-Basename-2.85-491.fc37.noarch                                       
  perl-File-Compare-1.100.700-491.fc37.noarch                                   
  perl-File-Copy-2.39-491.fc37.noarch                                           
  perl-File-Find-1.40-491.fc37.noarch                                           
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-491.fc37.noarch                                           
  perl-Getopt-Long-1:2.52-489.fc37.noarch                                       
  perl-Getopt-Std-1.13-491.fc37.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-491.fc37.x86_64                                                  
  perl-IPC-Open3-1.22-491.fc37.noarch                                           
  perl-MIME-Base64-3.16-489.fc37.x86_64                                         
  perl-POSIX-2.03-491.fc37.x86_64                                               
  perl-PathTools-3.84-489.fc37.x86_64                                           
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64                                 
  perl-SelectSaver-1.02-491.fc37.noarch                                         
  perl-Socket-4:2.035-2.fc37.x86_64                                             
  perl-Storable-1:3.26-489.fc37.x86_64                                          
  perl-Symbol-1.09-491.fc37.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Thread-Queue-3.14-489.fc37.noarch                                        
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-constant-1.33-490.fc37.noarch                                            
  perl-generators-1.13-8.fc37.noarch                                            
  perl-if-0.61.000-491.fc37.noarch                                              
  perl-interpreter-4:5.36.0-491.fc37.x86_64                                     
  perl-libs-4:5.36.0-491.fc37.x86_64                                            
  perl-macros-4:5.36.0-491.fc37.noarch                                          
  perl-mro-1.26-491.fc37.x86_64                                                 
  perl-overload-1.35-491.fc37.noarch                                            
  perl-overloading-0.02-491.fc37.noarch                                         
  perl-parent-1:0.238-489.fc37.noarch                                           
  perl-podlators-1:4.14-489.fc37.noarch                                         
  perl-subs-1.04-491.fc37.noarch                                                
  perl-threads-1:2.27-489.fc37.x86_64                                           
  perl-threads-shared-1.64-489.fc37.x86_64                                      
  perl-vars-1.05-491.fc37.noarch                                                
  python-pip-wheel-22.2-1.fc37.noarch                                           
  python-setuptools-wheel-62.6.0-2.fc37.noarch                                  
  python3-3.11.0~rc1-1.fc38.x86_64                                              
  python3-libs-3.11.0~rc1-1.fc38.x86_64                                         
  python3-numpy-1:1.22.0-7.fc37.x86_64                                          
  zlib-devel-1.2.12-4.fc37.x86_64                                               

Complete!
Finish: build setup for mmseq-1.0.11-5.fc38.src.rpm
Start: rpmbuild mmseq-1.0.11-5.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1598486400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Vox46t
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.emFy5u
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mmseq-1.0.11/.package_note-mmseq-1.0.11-5.fc38.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh mmseq 1.0.11-5.fc38 x86_64
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function 'int main(int, char**)':
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable 'curoff' [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable 'gff_pos' [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro 'WRITE_UINT'
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro 'WRITE_UINT'
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:16: warning: unused variable 'nextStrLen' [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function 'int main(int, char**)':
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function 'void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)':
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)':
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)':
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)':
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'long long unsigned int'} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function 'void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)':
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'int main(int, char**)':
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable 'isident' [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro 'WRITE_UINT'
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro 'WRITE_UINT'
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:16: warning: unused variable 'nextStrLen' [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)':
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::string)':
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function 'std::vector<double> meanvar(std::vector<double>, double, double)':
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function 'int main(int, char**)':
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: 'boost::numeric::ublas::compressed_matrix<bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable 'threadid' [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable 'buf16384' [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable 'doublehit' set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
In file included from /usr/include/c++/12/ios:40,
                 from /usr/include/c++/12/ostream:38,
                 from /usr/include/c++/12/iostream:39,
                 from mmseq.cpp:18:
In function 'std::char_traits<char>::copy(char*, char const*, unsigned long)',
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_S_copy(char*, char const*, unsigned long)' at /usr/include/c++/12/bits/basic_string.h:423:21,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)' at /usr/include/c++/12/bits/basic_string.tcc:532:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(unsigned long, unsigned long, char const*, unsigned long)' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::insert<char const*, void>(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::write(char const*, long)' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'boost::iostreams::detail::write_device_impl<boost::iostreams::output>::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'boost::iostreams::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'boost::iostreams::basic_gzip_compressor<std::allocator<char> >::write_long<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(long, boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, mpl_::bool_<true>)void [clone .isra.0]' at /usr/include/boost/iostreams/filter/gzip.hpp:284:30:
/usr/include/c++/12/bits/char_traits.h:431:56: warning: 'memcpy' accessing 9223372036854775810 or more bytes at offsets -4611686018427387902 and [-4611686018427387903, 4611686018427387904] may overlap up to 9223372036854775813 bytes at offset -3 [-Wrestrict]
  431 |         return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n));
      |                                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In function 'std::char_traits<char>::copy(char*, char const*, unsigned long)',
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_S_copy(char*, char const*, unsigned long)' at /usr/include/c++/12/bits/basic_string.h:423:21,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)' at /usr/include/c++/12/bits/basic_string.tcc:532:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(unsigned long, unsigned long, char const*, unsigned long)' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::insert<char const*, void>(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char const*, char const*)__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::write(char const*, long)' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'boost::iostreams::detail::write_device_impl<boost::iostreams::output>::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'boost::iostreams::put<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, boost::iostreams::char_type_of<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::type)bool' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'boost::iostreams::basic_gzip_compressor<std::allocator<char> >::write_long<boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >(long, boost::iostreams::back_insert_device<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, mpl_::bool_<true>)void [clone .isra.0]' at /usr/include/boost/iostreams/filter/gzip.hpp:285:30:
/usr/include/c++/12/bits/char_traits.h:431:56: warning: 'memcpy' accessing 9223372036854775810 or more bytes at offsets -4611686018427387902 and [-4611686018427387903, 4611686018427387904] may overlap up to 9223372036854775813 bytes at offset -3 [-Wrestrict]
  431 |         return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n));
      |                                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)':
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::string)':
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
In function 'move',
    inlined from '_S_move' at /usr/include/c++/12/bits/basic_string.h:433:21,
    inlined from '_M_replace' at /usr/include/c++/12/bits/basic_string.tcc:531:22,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'insert' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'write' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'write_long.constprop' at /usr/include/boost/iostreams/filter/gzip.hpp:282:30:
/usr/include/c++/12/bits/char_traits.h:419:57: warning: '__builtin_memmove' reading 2 or more bytes from a region of size 1 [-Wstringop-overread]
  419 |         return static_cast<char_type*>(__builtin_memmove(__s1, __s2, __n));
      |                                                         ^
/usr/include/boost/iostreams/write.hpp: In function 'write_long.constprop':
/usr/include/boost/iostreams/write.hpp:43:6: note: source object 'c' of size 1
   43 | bool put(T& t, typename char_type_of<T>::type c)
      |      ^
In function 'move',
    inlined from '_S_move' at /usr/include/c++/12/bits/basic_string.h:433:21,
    inlined from '_M_replace' at /usr/include/c++/12/bits/basic_string.tcc:531:22,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2171:19,
    inlined from 'replace' at /usr/include/c++/12/bits/basic_string.h:2380:22,
    inlined from 'insert' at /usr/include/c++/12/bits/basic_string.h:1798:17,
    inlined from 'write' at /usr/include/boost/iostreams/device/back_inserter.hpp:28:26,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:112:21,
    inlined from 'put' at /usr/include/boost/iostreams/write.hpp:44:43,
    inlined from 'write_long.constprop' at /usr/include/boost/iostreams/filter/gzip.hpp:285:30:
/usr/include/c++/12/bits/char_traits.h:419:57: warning: '__builtin_memmove' reading 2 or more bytes from a region of size 1 [-Wstringop-overread]
  419 |         return static_cast<char_type*>(__builtin_memmove(__s1, __s2, __n));
      |                                                         ^
/usr/include/boost/iostreams/write.hpp: In function 'write_long.constprop':
/usr/include/boost/iostreams/write.hpp:43:6: note: source object 'c' of size 1
   43 | bool put(T& t, typename char_type_of<T>::type c)
      |      ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function 'void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)':
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function 'std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)':
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Alignment>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function 'int main(int, char**)':
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<FastaRecord>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition '(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))' and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function 'int main(int, char**)':
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable 'line' [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function 'void convert(char*, std::string)':
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function 'int main(int, char**)':
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function 'void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)':
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable 'mcse_ind' set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable 'iact_ind' set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function 'void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)':
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)':
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)':
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function 'int main(int, char**)':
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccDKEb7K.ltrans1.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5QkHcE
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mmseq-1.0.11/.package_note-mmseq-1.0.11-5.fc38.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-5.fc38 --unique-debug-suffix -1.0.11-5.fc38.x86_64 --unique-debug-src-base mmseq-1.0.11-5.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/bam2hits
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/extract_transcripts
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/hitstools
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/mmcollapse
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/mmdiff
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/mmseq
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/offsetGTF
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/bin/t2g_hits
original debug info size: 22160kB, size after compression: 17996kB
/usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
542 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.k7wEKx
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mmseq-1.0.11/.package_note-mmseq-1.0.11-5.fc38.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh mmseq 1.0.11-5.fc38 x86_64
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-5.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.T3DZwD
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/share/doc/mmseq
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/share/doc/mmseq
+ cp -pr README.md /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/share/doc/mmseq
+ cp -pr COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/share/doc/mmseq
+ cp -pr doc/ /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-5.fc38 mmseq(x86-64) = 1.0.11-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.78.0()(64bit) libboost_regex.so.1.78.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.25()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-5.fc38.x86_64
Provides: mmseq-debugsource = 1.0.11-5.fc38 mmseq-debugsource(x86-64) = 1.0.11-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-5.fc38.x86_64
Provides: debuginfo(build-id) = 30cc1acc8f5720ad5581359925d3c61fd1c5e327 debuginfo(build-id) = 6f3c7d4fa9ecd4a882c1e5a0e264c8be101c90fa debuginfo(build-id) = 868903f57a0b5cbf1ae1d8a7293fce251ccd8223 debuginfo(build-id) = 86d93355b8b947aeb89fd74d5ba3be84087c6c96 debuginfo(build-id) = 94883463f0a916c4a9a829e991d28e0bfbd349f3 debuginfo(build-id) = ac827b5a2e8e7b440c17468d1ad9201bdf5c10cb debuginfo(build-id) = ae5eb826b0908a6680e92c1180767d1c99ce266e debuginfo(build-id) = dde1a075de44b1e447f4a7e0120c590b2887ac73 mmseq-debuginfo = 1.0.11-5.fc38 mmseq-debuginfo(x86-64) = 1.0.11-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-64) = 1.0.11-5.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64
Wrote: /builddir/build/RPMS/mmseq-1.0.11-5.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-5.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-5.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.jIgMLe
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-5.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.rdKggo
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-5.fc38.src.rpm
Finish: build phase for mmseq-1.0.11-5.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1660558474.901174/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-5.fc38.src.rpm) Config(child) 2 minutes 16 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool