Topics

Here is a list of all topics with brief descriptions:

dependencies
Vcsm class	A charge-simplex map for evaluating integrals of delta functions in a finite element setting
Vfetk class	FEtk master class (interface between FEtk and APBS)
Vpee class	This class provides some functionality for error esimation in parallel
APOLparm class	Parameter structure for APOL-specific variables from input files
BEMparm class	Parameter which holds useful parameters for generic multigrid calculations
FEMparm class	Parameter structure for FEM-specific variables from input files
GEOFLOWparm class	Parameter which holds useful parameters for GEOFLOWeric multigrid calculations
MGparm class	Parameter which holds useful parameters for generic multigrid calculations
NOsh class	Class for parsing for fixed format input files
PBAMparm class	Parameter which holds useful parameters for Poisson-boltzmann analytical method calculations
PBEparm class	Parameter structure for PBE variables independent of solver
PBSAMparm class	Parameter which holds useful parameters for Poisson-boltzmann analytical method calculations
Vacc class	Solvent- and ion-accessibility oracle
Valist class	Container class for list of atom objects
Vatom class	Atom class for interfacing APBS with PDB files
Vcap class	Collection of routines which cap certain exponential and hyperbolic functions
Vclist class	Atom cell list
Vgreen class	Provides capabilities for pointwise evaluation of free space Green's function for point charges in a uniform dielectric
Vhal class	A "class" which consists solely of macro definitions which are used by several other classes
Matrix wrapper class	A header for including data wrapping matrices
Vparam class	Reads and assigns charge/radii parameters
Vpbe class	The Poisson-Boltzmann master class
Vstring class	Provides a collection of useful non-ANSI string functions
Vunit class	Collection of constants and conversion factors
Vgrid class	Oracle for Cartesian mesh data
Vmgrid class	Oracle for Cartesian mesh data
Vopot class	Potential oracle for Cartesian mesh data
Vpmg class	A wrapper for Mike Holst's PMG multigrid code
Vpmgp class	Parameter structure for Mike Holst's PMGP code
C translation of Holst group PMG code	C translation of Holst group PMG code
High-level front-end routines