Warning: Permanently added '54.162.78.86' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 1546271 --chroot fedora-rawhide-x86_64 --detached Version: 0.39 Task: {'build_id': 1546271, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fetch_sources_only': True, 'git_hash': 'b34df59ee45621b9411b5940ed03446b10cd6c6d', 'git_repo': 'jvanek/java11/rdkit', 'memory_reqs': 2048, 'package_name': 'rdkit', 'package_version': '2019.03.3-9.fc31', 'project_dirname': 'java11', 'project_name': 'java11', 'project_owner': 'jvanek', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jvanek/java11/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'jvanek/java11--https://src.fedoraproject.org/user/jvanek', 'source_json': {'clone_url': 'https://copr-dist-git.fedorainfracloud.org/git/jvanek/java11/rdkit.git', 'committish': 'b34df59ee45621b9411b5940ed03446b10cd6c6d'}, 'source_type': 8, 'submitter': 'https://src.fedoraproject.org/user/jvanek', 'task_id': '1546271-fedora-rawhide-x86_64', 'timeout': 108000, 'use_bootstrap_container': False, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jvanek/java11/rdkit.git /tmp/copr-rpmbuild-brj9vpfp/obtain-sources/rdkit --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jvanek/java11/rdkit.git', '/tmp/copr-rpmbuild-brj9vpfp/obtain-sources/rdkit', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/copr-rpmbuild-brj9vpfp/obtain-sources/rdkit'... Running: git checkout b34df59ee45621b9411b5940ed03446b10cd6c6d cmd: ['git', 'checkout', 'b34df59ee45621b9411b5940ed03446b10cd6c6d'] cwd: /tmp/copr-rpmbuild-brj9vpfp/obtain-sources/rdkit rc: 0 stdout: stderr: Note: switching to 'b34df59ee45621b9411b5940ed03446b10cd6c6d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b34df59 automatic import of rdkit Running: cp -r . /tmp/copr-rpmbuild-brj9vpfp cmd: ['cp', '-r', '.', '/tmp/copr-rpmbuild-brj9vpfp'] cwd: /tmp/copr-rpmbuild-brj9vpfp/obtain-sources/rdkit rc: 0 stdout: stderr: Generated rpkg config: [rpkg] preprocess_spec = True # auto-packing is deprecated: auto_pack = True [git] lookaside = https://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(name)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = https://copr-dist-git.fedorainfracloud.org/git/%(module)s Writing config into /tmp/copr-rpmbuild-brj9vpfp/obtain-sources/.config/rpkg.conf Running: rpkg -C /tmp/copr-rpmbuild-brj9vpfp/obtain-sources/.config/rpkg.conf sources --outdir /tmp/copr-rpmbuild-brj9vpfp cmd: ['rpkg', '-C', '/tmp/copr-rpmbuild-brj9vpfp/obtain-sources/.config/rpkg.conf', 'sources', '--outdir', '/tmp/copr-rpmbuild-brj9vpfp'] cwd: /tmp/copr-rpmbuild-brj9vpfp/obtain-sources/rdkit rc: 0 stdout: Downloading Release_2019_03_3.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org stderr: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=108000): unbuffer mock --buildsrpm --spec /tmp/copr-rpmbuild-brj9vpfp/rdkit.spec --sources /tmp/copr-rpmbuild-brj9vpfp --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1594438765.474299 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.3 starting (python version = 3.7.6)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/tmp/copr-rpmbuild-brj9vpfp/rdkit.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1594438765.474299/root. INFO: calling preinit hooks INFO: enabled root cache INFO: /var/lib/copr-rpmbuild/results/configs/child.cfg newer than root cache; cache will be rebuilt INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.3 INFO: Mock Version: 2.3 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk Copr repository 81 kB/s | 3.0 kB 00:00 Copr repository 27 MB/s | 8.3 MB 00:00 fedora 236 kB/s | 13 kB 00:00 Dependencies resolved. ========================================================================================== Package Arch Version Repo Size ========================================================================================== Installing group/module packages: bash  x86_64 5.0.17-1.fc33 fedora 1.6 M bzip2  x86_64 1.0.8-2.fc32 fedora 52 k coreutils  x86_64 8.32-7.fc33 fedora 1.2 M cpio  x86_64 2.13-5.1.fc33 fedora 283 k diffutils  x86_64 3.7-4.fc32 fedora 397 k fedora-release-common  noarch 33-0.9 fedora 21 k findutils  x86_64 1:4.7.0-4.fc33 fedora 552 k gawk  x86_64 5.0.1-7.fc32 fedora 1.2 M glibc-minimal-langpack  x86_64 2.31.9000-17.fc33 fedora 72 k grep  x86_64 3.4-1.fc33 fedora 258 k gzip  x86_64 1.10-2.fc32 fedora 155 k info  x86_64 6.7-7.fc33 fedora 228 k make  x86_64 1:4.3-1.fc33 fedora 536 k patch  x86_64 2.7.6-12.fc32 fedora 135 k redhat-rpm-config  noarch 161-2.fc33 fedora 65 k rpm-build  x86_64 4.16.0-0.beta3.2.fc33 fedora 97 k sed  x86_64 4.8-1.fc33 fedora 303 k shadow-utils  x86_64 2:4.8.1-3.fc33 fedora 1.2 M tar  x86_64 2:1.32-4.fc32 fedora 887 k unzip  x86_64 6.0-47.fc32 fedora 179 k util-linux  x86_64 2.35.2-2.fc33 fedora 2.7 M which  x86_64 2.21-19.fc33 fedora 42 k xz  x86_64 5.2.5-2.fc33 fedora 218 k Installing dependencies: alternatives  x86_64 1.11-6.fc32 fedora 35 k audit-libs  x86_64 3.0-0.20.20191104git1c2f876.fc33 fedora 115 k basesystem  noarch 11-9.fc32 fedora 6.8 k binutils  x86_64 2.34.0-8.fc33 fedora 5.4 M binutils-gold  x86_64 2.34.0-8.fc33 fedora 856 k bzip2-libs  x86_64 1.0.8-2.fc32 fedora 40 k ca-certificates  noarch 2020.2.41-3.fc33 fedora 351 k coreutils-common  x86_64 8.32-7.fc33 fedora 2.0 M cracklib  x86_64 2.9.6-22.fc32 fedora 83 k crypto-policies  noarch 20200625-1.gitb298a9e.fc33 fedora 55 k curl  x86_64 7.71.1-2.fc33 fedora 302 k cyrus-sasl-lib  x86_64 2.1.27-5.fc33 fedora 101 k dwz  x86_64 0.13-2.fc32 fedora 109 k efi-srpm-macros  noarch 4-4.fc32 fedora 22 k elfutils  x86_64 0.180-3.fc33 fedora 530 k elfutils-debuginfod-client  x86_64 0.180-3.fc33 fedora 32 k elfutils-default-yama-scope  noarch 0.180-3.fc33 fedora 17 k elfutils-libelf  x86_64 0.180-3.fc33 fedora 193 k elfutils-libs  x86_64 0.180-3.fc33 fedora 264 k expat  x86_64 2.2.8-2.fc32 fedora 103 k fedora-gpg-keys  noarch 33-0.8 fedora 103 k fedora-release  noarch 33-0.9 fedora 12 k fedora-release-identity-basic  noarch 33-0.9 fedora 13 k fedora-repos  noarch 33-0.8 fedora 10 k fedora-repos-rawhide  noarch 33-0.8 fedora 9.4 k file  x86_64 5.39-2.fc33 fedora 52 k file-libs  x86_64 5.39-2.fc33 fedora 591 k filesystem  x86_64 3.14-2.fc32 fedora 1.1 M fonts-srpm-macros  noarch 1:2.0.5-3.fc33 fedora 26 k fpc-srpm-macros  noarch 1.3-1.fc32 fedora 7.6 k gc  x86_64 8.0.4-3.fc32 fedora 113 k gdb-minimal  x86_64 9.2-2.fc33 fedora 3.5 M ghc-srpm-macros  noarch 1.5.0-2.fc32 fedora 7.7 k glibc  x86_64 2.31.9000-17.fc33 fedora 3.5 M glibc-common  x86_64 2.31.9000-17.fc33 fedora 2.0 M gmp  x86_64 1:6.2.0-1.fc33 fedora 322 k gnat-srpm-macros  noarch 4-11.fc32 fedora 8.2 k go-srpm-macros  noarch 3.0.8-5.fc32 fedora 25 k guile22  x86_64 2.2.6-4.fc32 fedora 6.6 M keyutils-libs  x86_64 1.6-4.fc32 fedora 31 k krb5-libs  x86_64 1.18.2-10.fc33 fedora 757 k libacl  x86_64 2.2.53-6.fc33 fedora 25 k libarchive  x86_64 3.4.3-1.fc33 fedora 389 k libattr  x86_64 2.4.48-9.fc33 fedora 18 k libblkid  x86_64 2.35.2-2.fc33 fedora 153 k libbrotli  x86_64 1.0.7-11.fc33 fedora 323 k libcap  x86_64 2.26-7.fc32 fedora 52 k libcap-ng  x86_64 0.7.10-3.fc33 fedora 28 k libcom_err  x86_64 1.45.6-2.fc33 fedora 28 k libcurl  x86_64 7.71.1-2.fc33 fedora 273 k libdb  x86_64 5.3.28-40.fc32 fedora 761 k libeconf  x86_64 0.3.5-1.fc32 fedora 24 k libfdisk  x86_64 2.35.2-2.fc33 fedora 205 k libffi  x86_64 3.1-25.fc33 fedora 33 k libgcc  x86_64 10.1.1-2.fc33 fedora 93 k libgcrypt  x86_64 1.8.5-7.fc33 fedora 471 k libgomp  x86_64 10.1.1-2.fc33 fedora 252 k libgpg-error  x86_64 1.37-1.fc33 fedora 205 k libidn2  x86_64 2.3.0-2.fc32 fedora 104 k libmetalink  x86_64 0.1.3-10.fc32 fedora 31 k libmount  x86_64 2.35.2-2.fc33 fedora 181 k libnghttp2  x86_64 1.41.0-1.fc33 fedora 79 k libnsl2  x86_64 1.2.0-6.20180605git4a062cf.fc32 fedora 59 k libpkgconf  x86_64 1.7.0-1.fc33 fedora 35 k libpsl  x86_64 0.21.0-4.fc32 fedora 61 k libpwquality  x86_64 1.4.2-3.fc33 fedora 101 k libselinux  x86_64 3.0-5.fc33 fedora 85 k libsemanage  x86_64 3.0-4.fc33 fedora 122 k libsepol  x86_64 3.0-3.fc32 fedora 299 k libsigsegv  x86_64 2.11-10.fc32 fedora 26 k libsmartcols  x86_64 2.35.2-2.fc33 fedora 121 k libssh  x86_64 0.9.4-3.fc33 fedora 215 k libssh-config  noarch 0.9.4-3.fc33 fedora 11 k libstdc++  x86_64 10.1.1-2.fc33 fedora 611 k libtasn1  x86_64 4.16.0-1.fc32 fedora 73 k libtirpc  x86_64 1.2.6-0.fc33 fedora 98 k libtool-ltdl  x86_64 2.4.6-34.fc33 fedora 36 k libunistring  x86_64 0.9.10-7.fc32 fedora 512 k libutempter  x86_64 1.2.1-1.fc33 fedora 26 k libuuid  x86_64 2.35.2-2.fc33 fedora 28 k libverto  x86_64 0.3.0-9.fc32 fedora 22 k libxcrypt  x86_64 4.4.16-5.fc33 fedora 124 k libxml2  x86_64 2.9.10-5.fc33 fedora 703 k libzstd  x86_64 1.4.5-3.fc33 fedora 338 k lua-libs  x86_64 5.4.0-2.fc33 fedora 208 k lz4-libs  x86_64 1.9.1-2.fc32 fedora 65 k mpfr  x86_64 4.0.2-5.fc33 fedora 256 k ncurses-base  noarch 6.2-2.20200222.fc33 fedora 60 k ncurses-libs  x86_64 6.2-2.20200222.fc33 fedora 327 k nim-srpm-macros  noarch 3-2.fc32 fedora 8.3 k ocaml-srpm-macros  noarch 6-2.fc32 fedora 7.7 k openblas-srpm-macros  noarch 2-7.fc32 fedora 7.2 k openldap  x86_64 2.4.50-2.fc33 fedora 306 k openssl-libs  x86_64 1:1.1.1g-11.fc33 fedora 1.4 M p11-kit  x86_64 0.23.20-1.fc32 fedora 347 k p11-kit-trust  x86_64 0.23.20-1.fc32 fedora 142 k pam  x86_64 1.4.0-2.fc33 fedora 560 k pcre  x86_64 8.44-1.fc33 fedora 198 k pcre2  x86_64 10.35-3.fc33 fedora 233 k pcre2-syntax  noarch 10.35-3.fc33 fedora 142 k perl-srpm-macros  noarch 1-37.fc33 fedora 8.4 k pkgconf  x86_64 1.7.0-1.fc33 fedora 41 k pkgconf-m4  noarch 1.7.0-1.fc33 fedora 14 k pkgconf-pkg-config  x86_64 1.7.0-1.fc33 fedora 9.5 k popt  x86_64 1.18-1.fc33 fedora 58 k publicsuffix-list-dafsa  noarch 20190417-3.fc32 fedora 56 k python-srpm-macros  noarch 3.9-4.fc33 fedora 20 k qt5-srpm-macros  noarch 5.14.2-3.fc33 fedora 8.8 k readline  x86_64 8.0-4.fc32 fedora 207 k rpm  x86_64 4.16.0-0.beta3.2.fc33 fedora 504 k rpm-build-libs  x86_64 4.16.0-0.beta3.2.fc33 fedora 100 k rpm-libs  x86_64 4.16.0-0.beta3.2.fc33 fedora 335 k rust-srpm-macros  noarch 15-1.fc33 fedora 9.7 k setup  noarch 2.13.7-1.fc33 fedora 142 k sqlite-libs  x86_64 3.32.3-1.fc33 fedora 614 k systemd-libs  x86_64 245.6-2.fc33 fedora 558 k tzdata  noarch 2020a-2.fc33 copr_base 430 k xxhash-libs  x86_64 0.7.4-1.fc33 fedora 41 k xz-libs  x86_64 5.2.5-2.fc33 fedora 90 k zip  x86_64 3.0-26.fc32 fedora 260 k zlib  x86_64 1.2.11-21.fc32 fedora 93 k zstd  x86_64 1.4.5-3.fc33 fedora 601 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================== Install 145 Packages Total size: 57 M Installed size: 230 M Downloading Packages: [SKIPPED] tzdata-2020a-2.fc33.noarch.rpm: Already downloaded [SKIPPED] alternatives-1.11-6.fc32.x86_64.rpm: Already downloaded [SKIPPED] audit-libs-3.0-0.20.20191104git1c2f876.fc33.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-9.fc32.noarch.rpm: Already downloaded [SKIPPED] bash-5.0.17-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.34.0-8.fc33.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.34.0-8.fc33.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2020.2.41-3.fc33.noarch.rpm: Already downloaded [SKIPPED] coreutils-8.32-7.fc33.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-8.32-7.fc33.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-5.1.fc33.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.6-22.fc32.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20200625-1.gitb298a9e.fc33.noarch.rpm: Already downloaded [SKIPPED] curl-7.71.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.27-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.7-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.13-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-4-4.fc32.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.180-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.180-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.180-3.fc33.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.180-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.180-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] expat-2.2.8-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-33-0.8.noarch.rpm: Already downloaded [SKIPPED] fedora-release-33-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-33-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-33-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-33-0.8.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-33-0.8.noarch.rpm: Already downloaded [SKIPPED] file-5.39-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.39-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.14-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.7.0-4.fc33.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-3.fc33.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-1.fc32.noarch.rpm: Already downloaded [SKIPPED] gawk-5.0.1-7.fc32.x86_64.rpm: Already downloaded [SKIPPED] gc-8.0.4-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-9.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-2.fc32.noarch.rpm: Already downloaded [SKIPPED] glibc-2.31.9000-17.fc33.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.31.9000-17.fc33.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.31.9000-17.fc33.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-11.fc32.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.0.8-5.fc32.noarch.rpm: Already downloaded [SKIPPED] grep-3.4-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.6-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.10-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] info-6.7-7.fc33.x86_64.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.18.2-10.fc33.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.2.53-6.fc33.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.4.3-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.4.48-9.fc33.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.7-11.fc33.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.26-7.fc32.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.7.10-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.45.6-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.71.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-40.fc32.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.3.5-1.fc32.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.1-25.fc33.x86_64.rpm: Already downloaded [SKIPPED] libgcc-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libgcrypt-1.8.5-7.fc33.x86_64.rpm: Already downloaded [SKIPPED] libgomp-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libgpg-error-1.37-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.0-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] libmetalink-0.1.3-10.fc32.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.41.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-1.2.0-6.20180605git4a062cf.fc32.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.7.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.0-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.2-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.0-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.0-4.fc33.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.0-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.11-10.fc32.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.9.4-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.9.4-3.fc33.noarch.rpm: Already downloaded [SKIPPED] libstdc++-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.16.0-1.fc32.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.2.6-0.fc33.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.6-34.fc33.x86_64.rpm: Already downloaded [SKIPPED] libunistring-0.9.10-7.fc32.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.0-9.fc32.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.16-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.9.10-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.4.5-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.0-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.1-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] make-4.3-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.0.2-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.2-2.20200222.fc33.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.2-2.20200222.fc33.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-2.fc32.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-6-2.fc32.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-7.fc32.noarch.rpm: Already downloaded [SKIPPED] openldap-2.4.50-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-1.1.1g-11.fc33.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.23.20-1.fc32.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.23.20-1.fc32.x86_64.rpm: Already downloaded [SKIPPED] pam-1.4.0-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-12.fc32.x86_64.rpm: Already downloaded [SKIPPED] pcre-8.44-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.35-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.35-3.fc33.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-37.fc33.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.7.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.7.0-1.fc33.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.7.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] popt-1.18-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20190417-3.fc32.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.9-4.fc33.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.14.2-3.fc33.noarch.rpm: Already downloaded [SKIPPED] readline-8.0-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-161-2.fc33.noarch.rpm: Already downloaded [SKIPPED] rpm-4.16.0-0.beta3.2.fc33.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.16.0-0.beta3.2.fc33.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.16.0-0.beta3.2.fc33.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.16.0-0.beta3.2.fc33.x86_64.rpm: Already downloaded [SKIPPED] rust-srpm-macros-15-1.fc33.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] setup-2.13.7-1.fc33.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.8.1-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.32.3-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-245.6-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] tar-1.32-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] unzip-6.0-47.fc32.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-19.fc33.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.7.4-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.5-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.5-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-26.fc32.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.11-21.fc32.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.4.5-3.fc33.x86_64.rpm: Already downloaded warning: Generating 18 missing index(es), please wait... warning: /var/lib/mock/fedora-rawhide-x86_64-1594438765.474299/root/var/cache/dnf/fedora-2d95c80a1fa0a67d/packages/alternatives-1.11-6.fc32.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID 9570ff31: NOKEY fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x9570FF31: Userid : "Fedora (33) " Fingerprint: 963A 2BEB 0200 9608 FE67 EA42 49FD 7749 9570 FF31 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-33-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-33-primary (0x9570FF31) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x12C944D0: Userid : "Fedora (32) " Fingerprint: 97A1 AE57 C3A2 372C CA3A 4ABA 6C13 026D 12C9 44D0 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-32-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-2.fc32.x86_64 1/1 Preparing : 1/1 Installing : libgcc-10.1.1-2.fc33.x86_64 1/145 Running scriptlet: libgcc-10.1.1-2.fc33.x86_64 1/145 Installing : crypto-policies-20200625-1.gitb298a9e.fc33.noarc 2/145 Running scriptlet: crypto-policies-20200625-1.gitb298a9e.fc33.noarc 2/145 Installing : fedora-release-identity-basic-33-0.9.noarch 3/145 Installing : rust-srpm-macros-15-1.fc33.noarch 4/145 Installing : qt5-srpm-macros-5.14.2-3.fc33.noarch 5/145 Installing : publicsuffix-list-dafsa-20190417-3.fc32.noarch 6/145 Installing : pkgconf-m4-1.7.0-1.fc33.noarch 7/145 Installing : perl-srpm-macros-1-37.fc33.noarch 8/145 Installing : pcre2-syntax-10.35-3.fc33.noarch 9/145 Installing : openblas-srpm-macros-2-7.fc32.noarch 10/145 Installing : ocaml-srpm-macros-6-2.fc32.noarch 11/145 Installing : nim-srpm-macros-3-2.fc32.noarch 12/145 Installing : ncurses-base-6.2-2.20200222.fc33.noarch 13/145 Installing : libssh-config-0.9.4-3.fc33.noarch 14/145 Installing : gnat-srpm-macros-4-11.fc32.noarch 15/145 Installing : ghc-srpm-macros-1.5.0-2.fc32.noarch 16/145 Installing : fpc-srpm-macros-1.3-1.fc32.noarch 17/145 Installing : fedora-gpg-keys-33-0.8.noarch 18/145 Installing : fedora-release-33-0.9.noarch 19/145 Installing : fedora-release-common-33-0.9.noarch 20/145 Installing : fedora-repos-rawhide-33-0.8.noarch 21/145 Installing : fedora-repos-33-0.8.noarch 22/145 Installing : setup-2.13.7-1.fc33.noarch 23/145 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-1.fc33.noarch 23/145 Installing : filesystem-3.14-2.fc32.x86_64 24/145 Installing : basesystem-11-9.fc32.noarch 25/145 Installing : coreutils-common-8.32-7.fc33.x86_64 26/145 Installing : tzdata-2020a-2.fc33.noarch 27/145 Installing : bash-5.0.17-1.fc33.x86_64 28/145 Running scriptlet: bash-5.0.17-1.fc33.x86_64 28/145 Installing : ncurses-libs-6.2-2.20200222.fc33.x86_64 29/145 Running scriptlet: glibc-2.31.9000-17.fc33.x86_64 30/145 Installing : glibc-2.31.9000-17.fc33.x86_64 30/145 Running scriptlet: glibc-2.31.9000-17.fc33.x86_64 30/145 Installing : glibc-common-2.31.9000-17.fc33.x86_64 31/145 Installing : glibc-minimal-langpack-2.31.9000-17.fc33.x86_64 32/145 Installing : zlib-1.2.11-21.fc32.x86_64 33/145 Installing : bzip2-libs-1.0.8-2.fc32.x86_64 34/145 Installing : xz-libs-5.2.5-2.fc33.x86_64 35/145 Installing : elfutils-libelf-0.180-3.fc33.x86_64 36/145 Installing : libstdc++-10.1.1-2.fc33.x86_64 37/145 Installing : libxcrypt-4.4.16-5.fc33.x86_64 38/145 Installing : libattr-2.4.48-9.fc33.x86_64 39/145 Installing : libacl-2.2.53-6.fc33.x86_64 40/145 Installing : libcom_err-1.45.6-2.fc33.x86_64 41/145 Installing : libdb-5.3.28-40.fc32.x86_64 42/145 Installing : libuuid-2.35.2-2.fc33.x86_64 43/145 Installing : popt-1.18-1.fc33.x86_64 44/145 Installing : readline-8.0-4.fc32.x86_64 45/145 Installing : libcap-2.26-7.fc32.x86_64 46/145 Installing : libunistring-0.9.10-7.fc32.x86_64 47/145 Installing : libzstd-1.4.5-3.fc33.x86_64 48/145 Installing : libidn2-2.3.0-2.fc32.x86_64 49/145 Installing : unzip-6.0-47.fc32.x86_64 50/145 Installing : file-libs-5.39-2.fc33.x86_64 51/145 Installing : file-5.39-2.fc33.x86_64 52/145 Installing : sqlite-libs-3.32.3-1.fc33.x86_64 53/145 Installing : alternatives-1.11-6.fc32.x86_64 54/145 Installing : libcap-ng-0.7.10-3.fc33.x86_64 55/145 Installing : audit-libs-3.0-0.20.20191104git1c2f876.fc33.x86_ 56/145 Installing : libffi-3.1-25.fc33.x86_64 57/145 Installing : p11-kit-0.23.20-1.fc32.x86_64 58/145 Installing : libsepol-3.0-3.fc32.x86_64 59/145 Running scriptlet: libsepol-3.0-3.fc32.x86_64 59/145 Installing : lua-libs-5.4.0-2.fc33.x86_64 60/145 Installing : lz4-libs-1.9.1-2.fc32.x86_64 61/145 Installing : pcre2-10.35-3.fc33.x86_64 62/145 Installing : libselinux-3.0-5.fc33.x86_64 63/145 Installing : sed-4.8-1.fc33.x86_64 64/145 Installing : findutils-1:4.7.0-4.fc33.x86_64 65/145 Installing : libsemanage-3.0-4.fc33.x86_64 66/145 Installing : shadow-utils-2:4.8.1-3.fc33.x86_64 67/145 Running scriptlet: libutempter-1.2.1-1.fc33.x86_64 68/145 Installing : libutempter-1.2.1-1.fc33.x86_64 68/145 Installing : patch-2.7.6-12.fc32.x86_64 69/145 Installing : tar-2:1.32-4.fc32.x86_64 70/145 Installing : zip-3.0-26.fc32.x86_64 71/145 Installing : libpsl-0.21.0-4.fc32.x86_64 72/145 Installing : gc-8.0.4-3.fc32.x86_64 73/145 Installing : zstd-1.4.5-3.fc33.x86_64 74/145 Installing : dwz-0.13-2.fc32.x86_64 75/145 Installing : libxml2-2.9.10-5.fc33.x86_64 76/145 Installing : bzip2-1.0.8-2.fc32.x86_64 77/145 Installing : cpio-2.13-5.1.fc33.x86_64 78/145 Installing : diffutils-3.7-4.fc32.x86_64 79/145 Installing : expat-2.2.8-2.fc32.x86_64 80/145 Installing : libmetalink-0.1.3-10.fc32.x86_64 81/145 Installing : keyutils-libs-1.6-4.fc32.x86_64 82/145 Installing : libbrotli-1.0.7-11.fc33.x86_64 83/145 Installing : libeconf-0.3.5-1.fc32.x86_64 84/145 Installing : libgomp-10.1.1-2.fc33.x86_64 85/145 Installing : libgpg-error-1.37-1.fc33.x86_64 86/145 Installing : libgcrypt-1.8.5-7.fc33.x86_64 87/145 Installing : libnghttp2-1.41.0-1.fc33.x86_64 88/145 Installing : libpkgconf-1.7.0-1.fc33.x86_64 89/145 Installing : pkgconf-1.7.0-1.fc33.x86_64 90/145 Installing : pkgconf-pkg-config-1.7.0-1.fc33.x86_64 91/145 Installing : gmp-1:6.2.0-1.fc33.x86_64 92/145 Installing : mpfr-4.0.2-5.fc33.x86_64 93/145 Installing : libsigsegv-2.11-10.fc32.x86_64 94/145 Installing : gawk-5.0.1-7.fc32.x86_64 95/145 Installing : libsmartcols-2.35.2-2.fc33.x86_64 96/145 Installing : libtasn1-4.16.0-1.fc32.x86_64 97/145 Installing : p11-kit-trust-0.23.20-1.fc32.x86_64 98/145 Running scriptlet: p11-kit-trust-0.23.20-1.fc32.x86_64 98/145 Installing : libtool-ltdl-2.4.6-34.fc33.x86_64 99/145 Installing : libverto-0.3.0-9.fc32.x86_64 100/145 Installing : pcre-8.44-1.fc33.x86_64 101/145 Installing : grep-3.4-1.fc33.x86_64 102/145 Installing : openssl-libs-1:1.1.1g-11.fc33.x86_64 103/145 Installing : coreutils-8.32-7.fc33.x86_64 104/145 Running scriptlet: ca-certificates-2020.2.41-3.fc33.noarch 105/145 Installing : ca-certificates-2020.2.41-3.fc33.noarch 105/145 Running scriptlet: ca-certificates-2020.2.41-3.fc33.noarch 105/145 Installing : krb5-libs-1.18.2-10.fc33.x86_64 106/145 Installing : libblkid-2.35.2-2.fc33.x86_64 107/145 Running scriptlet: libblkid-2.35.2-2.fc33.x86_64 107/145 Installing : libtirpc-1.2.6-0.fc33.x86_64 108/145 Installing : binutils-gold-2.34.0-8.fc33.x86_64 109/145 Installing : binutils-2.34.0-8.fc33.x86_64 110/145 Running scriptlet: binutils-2.34.0-8.fc33.x86_64 110/145 Installing : gzip-1.10-2.fc32.x86_64 111/145 Installing : cracklib-2.9.6-22.fc32.x86_64 112/145 Installing : libnsl2-1.2.0-6.20180605git4a062cf.fc32.x86_64 113/145 Installing : libpwquality-1.4.2-3.fc33.x86_64 114/145 Installing : pam-1.4.0-2.fc33.x86_64 115/145 Installing : libfdisk-2.35.2-2.fc33.x86_64 116/145 Installing : libmount-2.35.2-2.fc33.x86_64 117/145 Installing : cyrus-sasl-lib-2.1.27-5.fc33.x86_64 118/145 Installing : openldap-2.4.50-2.fc33.x86_64 119/145 Installing : libssh-0.9.4-3.fc33.x86_64 120/145 Installing : libcurl-7.71.1-2.fc33.x86_64 121/145 Installing : curl-7.71.1-2.fc33.x86_64 122/145 Installing : guile22-2.2.6-4.fc32.x86_64 123/145 Running scriptlet: guile22-2.2.6-4.fc32.x86_64 123/145 Installing : systemd-libs-245.6-2.fc33.x86_64 124/145 Running scriptlet: systemd-libs-245.6-2.fc33.x86_64 124/145 Installing : libarchive-3.4.3-1.fc33.x86_64 125/145 Installing : rpm-4.16.0-0.beta3.2.fc33.x86_64 126/145 Installing : rpm-libs-4.16.0-0.beta3.2.fc33.x86_64 127/145 Installing : efi-srpm-macros-4-4.fc32.noarch 128/145 Installing : fonts-srpm-macros-1:2.0.5-3.fc33.noarch 129/145 Installing : go-srpm-macros-3.0.8-5.fc32.noarch 130/145 Installing : python-srpm-macros-3.9-4.fc33.noarch 131/145 Installing : redhat-rpm-config-161-2.fc33.noarch 132/145 Installing : xz-5.2.5-2.fc33.x86_64 133/145 Installing : xxhash-libs-0.7.4-1.fc33.x86_64 134/145 Installing : elfutils-default-yama-scope-0.180-3.fc33.noarch 135/145 Running scriptlet: elfutils-default-yama-scope-0.180-3.fc33.noarch 135/145 Installing : elfutils-libs-0.180-3.fc33.x86_64 136/145 Installing : elfutils-debuginfod-client-0.180-3.fc33.x86_64 137/145 Installing : elfutils-0.180-3.fc33.x86_64 138/145 Installing : gdb-minimal-9.2-2.fc33.x86_64 139/145 Installing : rpm-build-libs-4.16.0-0.beta3.2.fc33.x86_64 140/145 Installing : rpm-build-4.16.0-0.beta3.2.fc33.x86_64 141/145 Installing : util-linux-2.35.2-2.fc33.x86_64 142/145 Running scriptlet: util-linux-2.35.2-2.fc33.x86_64 142/145 Installing : make-1:4.3-1.fc33.x86_64 143/145 Installing : info-6.7-7.fc33.x86_64 144/145 Installing : which-2.21-19.fc33.x86_64 145/145 Running scriptlet: filesystem-3.14-2.fc32.x86_64 145/145 Running scriptlet: ca-certificates-2020.2.41-3.fc33.noarch 145/145 Running scriptlet: rpm-4.16.0-0.beta3.2.fc33.x86_64 145/145 Running scriptlet: which-2.21-19.fc33.x86_64 145/145 Verifying : tzdata-2020a-2.fc33.noarch 1/145 Verifying : alternatives-1.11-6.fc32.x86_64 2/145 Verifying : audit-libs-3.0-0.20.20191104git1c2f876.fc33.x86_ 3/145 Verifying : basesystem-11-9.fc32.noarch 4/145 Verifying : bash-5.0.17-1.fc33.x86_64 5/145 Verifying : binutils-2.34.0-8.fc33.x86_64 6/145 Verifying : binutils-gold-2.34.0-8.fc33.x86_64 7/145 Verifying : bzip2-1.0.8-2.fc32.x86_64 8/145 Verifying : bzip2-libs-1.0.8-2.fc32.x86_64 9/145 Verifying : ca-certificates-2020.2.41-3.fc33.noarch 10/145 Verifying : coreutils-8.32-7.fc33.x86_64 11/145 Verifying : coreutils-common-8.32-7.fc33.x86_64 12/145 Verifying : cpio-2.13-5.1.fc33.x86_64 13/145 Verifying : cracklib-2.9.6-22.fc32.x86_64 14/145 Verifying : crypto-policies-20200625-1.gitb298a9e.fc33.noarc 15/145 Verifying : curl-7.71.1-2.fc33.x86_64 16/145 Verifying : cyrus-sasl-lib-2.1.27-5.fc33.x86_64 17/145 Verifying : diffutils-3.7-4.fc32.x86_64 18/145 Verifying : dwz-0.13-2.fc32.x86_64 19/145 Verifying : efi-srpm-macros-4-4.fc32.noarch 20/145 Verifying : elfutils-0.180-3.fc33.x86_64 21/145 Verifying : elfutils-debuginfod-client-0.180-3.fc33.x86_64 22/145 Verifying : elfutils-default-yama-scope-0.180-3.fc33.noarch 23/145 Verifying : elfutils-libelf-0.180-3.fc33.x86_64 24/145 Verifying : elfutils-libs-0.180-3.fc33.x86_64 25/145 Verifying : expat-2.2.8-2.fc32.x86_64 26/145 Verifying : fedora-gpg-keys-33-0.8.noarch 27/145 Verifying : fedora-release-33-0.9.noarch 28/145 Verifying : fedora-release-common-33-0.9.noarch 29/145 Verifying : fedora-release-identity-basic-33-0.9.noarch 30/145 Verifying : fedora-repos-33-0.8.noarch 31/145 Verifying : fedora-repos-rawhide-33-0.8.noarch 32/145 Verifying : file-5.39-2.fc33.x86_64 33/145 Verifying : file-libs-5.39-2.fc33.x86_64 34/145 Verifying : filesystem-3.14-2.fc32.x86_64 35/145 Verifying : findutils-1:4.7.0-4.fc33.x86_64 36/145 Verifying : fonts-srpm-macros-1:2.0.5-3.fc33.noarch 37/145 Verifying : fpc-srpm-macros-1.3-1.fc32.noarch 38/145 Verifying : gawk-5.0.1-7.fc32.x86_64 39/145 Verifying : gc-8.0.4-3.fc32.x86_64 40/145 Verifying : gdb-minimal-9.2-2.fc33.x86_64 41/145 Verifying : ghc-srpm-macros-1.5.0-2.fc32.noarch 42/145 Verifying : glibc-2.31.9000-17.fc33.x86_64 43/145 Verifying : glibc-common-2.31.9000-17.fc33.x86_64 44/145 Verifying : glibc-minimal-langpack-2.31.9000-17.fc33.x86_64 45/145 Verifying : gmp-1:6.2.0-1.fc33.x86_64 46/145 Verifying : gnat-srpm-macros-4-11.fc32.noarch 47/145 Verifying : go-srpm-macros-3.0.8-5.fc32.noarch 48/145 Verifying : grep-3.4-1.fc33.x86_64 49/145 Verifying : guile22-2.2.6-4.fc32.x86_64 50/145 Verifying : gzip-1.10-2.fc32.x86_64 51/145 Verifying : info-6.7-7.fc33.x86_64 52/145 Verifying : keyutils-libs-1.6-4.fc32.x86_64 53/145 Verifying : krb5-libs-1.18.2-10.fc33.x86_64 54/145 Verifying : libacl-2.2.53-6.fc33.x86_64 55/145 Verifying : libarchive-3.4.3-1.fc33.x86_64 56/145 Verifying : libattr-2.4.48-9.fc33.x86_64 57/145 Verifying : libblkid-2.35.2-2.fc33.x86_64 58/145 Verifying : libbrotli-1.0.7-11.fc33.x86_64 59/145 Verifying : libcap-2.26-7.fc32.x86_64 60/145 Verifying : libcap-ng-0.7.10-3.fc33.x86_64 61/145 Verifying : libcom_err-1.45.6-2.fc33.x86_64 62/145 Verifying : libcurl-7.71.1-2.fc33.x86_64 63/145 Verifying : libdb-5.3.28-40.fc32.x86_64 64/145 Verifying : libeconf-0.3.5-1.fc32.x86_64 65/145 Verifying : libfdisk-2.35.2-2.fc33.x86_64 66/145 Verifying : libffi-3.1-25.fc33.x86_64 67/145 Verifying : libgcc-10.1.1-2.fc33.x86_64 68/145 Verifying : libgcrypt-1.8.5-7.fc33.x86_64 69/145 Verifying : libgomp-10.1.1-2.fc33.x86_64 70/145 Verifying : libgpg-error-1.37-1.fc33.x86_64 71/145 Verifying : libidn2-2.3.0-2.fc32.x86_64 72/145 Verifying : libmetalink-0.1.3-10.fc32.x86_64 73/145 Verifying : libmount-2.35.2-2.fc33.x86_64 74/145 Verifying : libnghttp2-1.41.0-1.fc33.x86_64 75/145 Verifying : libnsl2-1.2.0-6.20180605git4a062cf.fc32.x86_64 76/145 Verifying : libpkgconf-1.7.0-1.fc33.x86_64 77/145 Verifying : libpsl-0.21.0-4.fc32.x86_64 78/145 Verifying : libpwquality-1.4.2-3.fc33.x86_64 79/145 Verifying : libselinux-3.0-5.fc33.x86_64 80/145 Verifying : libsemanage-3.0-4.fc33.x86_64 81/145 Verifying : libsepol-3.0-3.fc32.x86_64 82/145 Verifying : libsigsegv-2.11-10.fc32.x86_64 83/145 Verifying : libsmartcols-2.35.2-2.fc33.x86_64 84/145 Verifying : libssh-0.9.4-3.fc33.x86_64 85/145 Verifying : libssh-config-0.9.4-3.fc33.noarch 86/145 Verifying : libstdc++-10.1.1-2.fc33.x86_64 87/145 Verifying : libtasn1-4.16.0-1.fc32.x86_64 88/145 Verifying : libtirpc-1.2.6-0.fc33.x86_64 89/145 Verifying : libtool-ltdl-2.4.6-34.fc33.x86_64 90/145 Verifying : libunistring-0.9.10-7.fc32.x86_64 91/145 Verifying : libutempter-1.2.1-1.fc33.x86_64 92/145 Verifying : libuuid-2.35.2-2.fc33.x86_64 93/145 Verifying : libverto-0.3.0-9.fc32.x86_64 94/145 Verifying : libxcrypt-4.4.16-5.fc33.x86_64 95/145 Verifying : libxml2-2.9.10-5.fc33.x86_64 96/145 Verifying : libzstd-1.4.5-3.fc33.x86_64 97/145 Verifying : lua-libs-5.4.0-2.fc33.x86_64 98/145 Verifying : lz4-libs-1.9.1-2.fc32.x86_64 99/145 Verifying : make-1:4.3-1.fc33.x86_64 100/145 Verifying : mpfr-4.0.2-5.fc33.x86_64 101/145 Verifying : ncurses-base-6.2-2.20200222.fc33.noarch 102/145 Verifying : ncurses-libs-6.2-2.20200222.fc33.x86_64 103/145 Verifying : nim-srpm-macros-3-2.fc32.noarch 104/145 Verifying : ocaml-srpm-macros-6-2.fc32.noarch 105/145 Verifying : openblas-srpm-macros-2-7.fc32.noarch 106/145 Verifying : openldap-2.4.50-2.fc33.x86_64 107/145 Verifying : openssl-libs-1:1.1.1g-11.fc33.x86_64 108/145 Verifying : p11-kit-0.23.20-1.fc32.x86_64 109/145 Verifying : p11-kit-trust-0.23.20-1.fc32.x86_64 110/145 Verifying : pam-1.4.0-2.fc33.x86_64 111/145 Verifying : patch-2.7.6-12.fc32.x86_64 112/145 Verifying : pcre-8.44-1.fc33.x86_64 113/145 Verifying : pcre2-10.35-3.fc33.x86_64 114/145 Verifying : pcre2-syntax-10.35-3.fc33.noarch 115/145 Verifying : perl-srpm-macros-1-37.fc33.noarch 116/145 Verifying : pkgconf-1.7.0-1.fc33.x86_64 117/145 Verifying : pkgconf-m4-1.7.0-1.fc33.noarch 118/145 Verifying : pkgconf-pkg-config-1.7.0-1.fc33.x86_64 119/145 Verifying : popt-1.18-1.fc33.x86_64 120/145 Verifying : publicsuffix-list-dafsa-20190417-3.fc32.noarch 121/145 Verifying : python-srpm-macros-3.9-4.fc33.noarch 122/145 Verifying : qt5-srpm-macros-5.14.2-3.fc33.noarch 123/145 Verifying : readline-8.0-4.fc32.x86_64 124/145 Verifying : redhat-rpm-config-161-2.fc33.noarch 125/145 Verifying : rpm-4.16.0-0.beta3.2.fc33.x86_64 126/145 Verifying : rpm-build-4.16.0-0.beta3.2.fc33.x86_64 127/145 Verifying : rpm-build-libs-4.16.0-0.beta3.2.fc33.x86_64 128/145 Verifying : rpm-libs-4.16.0-0.beta3.2.fc33.x86_64 129/145 Verifying : rust-srpm-macros-15-1.fc33.noarch 130/145 Verifying : sed-4.8-1.fc33.x86_64 131/145 Verifying : setup-2.13.7-1.fc33.noarch 132/145 Verifying : shadow-utils-2:4.8.1-3.fc33.x86_64 133/145 Verifying : sqlite-libs-3.32.3-1.fc33.x86_64 134/145 Verifying : systemd-libs-245.6-2.fc33.x86_64 135/145 Verifying : tar-2:1.32-4.fc32.x86_64 136/145 Verifying : unzip-6.0-47.fc32.x86_64 137/145 Verifying : util-linux-2.35.2-2.fc33.x86_64 138/145 Verifying : which-2.21-19.fc33.x86_64 139/145 Verifying : xxhash-libs-0.7.4-1.fc33.x86_64 140/145 Verifying : xz-5.2.5-2.fc33.x86_64 141/145 Verifying : xz-libs-5.2.5-2.fc33.x86_64 142/145 Verifying : zip-3.0-26.fc32.x86_64 143/145 Verifying : zlib-1.2.11-21.fc32.x86_64 144/145 Verifying : zstd-1.4.5-3.fc33.x86_64 145/145 Installed: alternatives-1.11-6.fc32.x86_64 audit-libs-3.0-0.20.20191104git1c2f876.fc33.x86_64 basesystem-11-9.fc32.noarch bash-5.0.17-1.fc33.x86_64 binutils-2.34.0-8.fc33.x86_64 binutils-gold-2.34.0-8.fc33.x86_64 bzip2-1.0.8-2.fc32.x86_64 bzip2-libs-1.0.8-2.fc32.x86_64 ca-certificates-2020.2.41-3.fc33.noarch coreutils-8.32-7.fc33.x86_64 coreutils-common-8.32-7.fc33.x86_64 cpio-2.13-5.1.fc33.x86_64 cracklib-2.9.6-22.fc32.x86_64 crypto-policies-20200625-1.gitb298a9e.fc33.noarch curl-7.71.1-2.fc33.x86_64 cyrus-sasl-lib-2.1.27-5.fc33.x86_64 diffutils-3.7-4.fc32.x86_64 dwz-0.13-2.fc32.x86_64 efi-srpm-macros-4-4.fc32.noarch elfutils-0.180-3.fc33.x86_64 elfutils-debuginfod-client-0.180-3.fc33.x86_64 elfutils-default-yama-scope-0.180-3.fc33.noarch elfutils-libelf-0.180-3.fc33.x86_64 elfutils-libs-0.180-3.fc33.x86_64 expat-2.2.8-2.fc32.x86_64 fedora-gpg-keys-33-0.8.noarch fedora-release-33-0.9.noarch fedora-release-common-33-0.9.noarch fedora-release-identity-basic-33-0.9.noarch fedora-repos-33-0.8.noarch fedora-repos-rawhide-33-0.8.noarch file-5.39-2.fc33.x86_64 file-libs-5.39-2.fc33.x86_64 filesystem-3.14-2.fc32.x86_64 findutils-1:4.7.0-4.fc33.x86_64 fonts-srpm-macros-1:2.0.5-3.fc33.noarch fpc-srpm-macros-1.3-1.fc32.noarch gawk-5.0.1-7.fc32.x86_64 gc-8.0.4-3.fc32.x86_64 gdb-minimal-9.2-2.fc33.x86_64 ghc-srpm-macros-1.5.0-2.fc32.noarch glibc-2.31.9000-17.fc33.x86_64 glibc-common-2.31.9000-17.fc33.x86_64 glibc-minimal-langpack-2.31.9000-17.fc33.x86_64 gmp-1:6.2.0-1.fc33.x86_64 gnat-srpm-macros-4-11.fc32.noarch go-srpm-macros-3.0.8-5.fc32.noarch grep-3.4-1.fc33.x86_64 guile22-2.2.6-4.fc32.x86_64 gzip-1.10-2.fc32.x86_64 info-6.7-7.fc33.x86_64 keyutils-libs-1.6-4.fc32.x86_64 krb5-libs-1.18.2-10.fc33.x86_64 libacl-2.2.53-6.fc33.x86_64 libarchive-3.4.3-1.fc33.x86_64 libattr-2.4.48-9.fc33.x86_64 libblkid-2.35.2-2.fc33.x86_64 libbrotli-1.0.7-11.fc33.x86_64 libcap-2.26-7.fc32.x86_64 libcap-ng-0.7.10-3.fc33.x86_64 libcom_err-1.45.6-2.fc33.x86_64 libcurl-7.71.1-2.fc33.x86_64 libdb-5.3.28-40.fc32.x86_64 libeconf-0.3.5-1.fc32.x86_64 libfdisk-2.35.2-2.fc33.x86_64 libffi-3.1-25.fc33.x86_64 libgcc-10.1.1-2.fc33.x86_64 libgcrypt-1.8.5-7.fc33.x86_64 libgomp-10.1.1-2.fc33.x86_64 libgpg-error-1.37-1.fc33.x86_64 libidn2-2.3.0-2.fc32.x86_64 libmetalink-0.1.3-10.fc32.x86_64 libmount-2.35.2-2.fc33.x86_64 libnghttp2-1.41.0-1.fc33.x86_64 libnsl2-1.2.0-6.20180605git4a062cf.fc32.x86_64 libpkgconf-1.7.0-1.fc33.x86_64 libpsl-0.21.0-4.fc32.x86_64 libpwquality-1.4.2-3.fc33.x86_64 libselinux-3.0-5.fc33.x86_64 libsemanage-3.0-4.fc33.x86_64 libsepol-3.0-3.fc32.x86_64 libsigsegv-2.11-10.fc32.x86_64 libsmartcols-2.35.2-2.fc33.x86_64 libssh-0.9.4-3.fc33.x86_64 libssh-config-0.9.4-3.fc33.noarch libstdc++-10.1.1-2.fc33.x86_64 libtasn1-4.16.0-1.fc32.x86_64 libtirpc-1.2.6-0.fc33.x86_64 libtool-ltdl-2.4.6-34.fc33.x86_64 libunistring-0.9.10-7.fc32.x86_64 libutempter-1.2.1-1.fc33.x86_64 libuuid-2.35.2-2.fc33.x86_64 libverto-0.3.0-9.fc32.x86_64 libxcrypt-4.4.16-5.fc33.x86_64 libxml2-2.9.10-5.fc33.x86_64 libzstd-1.4.5-3.fc33.x86_64 lua-libs-5.4.0-2.fc33.x86_64 lz4-libs-1.9.1-2.fc32.x86_64 make-1:4.3-1.fc33.x86_64 mpfr-4.0.2-5.fc33.x86_64 ncurses-base-6.2-2.20200222.fc33.noarch ncurses-libs-6.2-2.20200222.fc33.x86_64 nim-srpm-macros-3-2.fc32.noarch ocaml-srpm-macros-6-2.fc32.noarch openblas-srpm-macros-2-7.fc32.noarch openldap-2.4.50-2.fc33.x86_64 openssl-libs-1:1.1.1g-11.fc33.x86_64 p11-kit-0.23.20-1.fc32.x86_64 p11-kit-trust-0.23.20-1.fc32.x86_64 pam-1.4.0-2.fc33.x86_64 patch-2.7.6-12.fc32.x86_64 pcre-8.44-1.fc33.x86_64 pcre2-10.35-3.fc33.x86_64 pcre2-syntax-10.35-3.fc33.noarch perl-srpm-macros-1-37.fc33.noarch pkgconf-1.7.0-1.fc33.x86_64 pkgconf-m4-1.7.0-1.fc33.noarch pkgconf-pkg-config-1.7.0-1.fc33.x86_64 popt-1.18-1.fc33.x86_64 publicsuffix-list-dafsa-20190417-3.fc32.noarch python-srpm-macros-3.9-4.fc33.noarch qt5-srpm-macros-5.14.2-3.fc33.noarch readline-8.0-4.fc32.x86_64 redhat-rpm-config-161-2.fc33.noarch rpm-4.16.0-0.beta3.2.fc33.x86_64 rpm-build-4.16.0-0.beta3.2.fc33.x86_64 rpm-build-libs-4.16.0-0.beta3.2.fc33.x86_64 rpm-libs-4.16.0-0.beta3.2.fc33.x86_64 rust-srpm-macros-15-1.fc33.noarch sed-4.8-1.fc33.x86_64 setup-2.13.7-1.fc33.noarch shadow-utils-2:4.8.1-3.fc33.x86_64 sqlite-libs-3.32.3-1.fc33.x86_64 systemd-libs-245.6-2.fc33.x86_64 tar-2:1.32-4.fc32.x86_64 tzdata-2020a-2.fc33.noarch unzip-6.0-47.fc32.x86_64 util-linux-2.35.2-2.fc33.x86_64 which-2.21-19.fc33.x86_64 xxhash-libs-0.7.4-1.fc33.x86_64 xz-5.2.5-2.fc33.x86_64 xz-libs-5.2.5-2.fc33.x86_64 zip-3.0-26.fc32.x86_64 zlib-1.2.11-21.fc32.x86_64 zstd-1.4.5-3.fc33.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: gc-8.0.4-3.fc32.x86_64 ncurses-base-6.2-2.20200222.fc33.noarch libzstd-1.4.5-3.fc33.x86_64 openldap-2.4.50-2.fc33.x86_64 rpm-libs-4.16.0-0.beta3.2.fc33.x86_64 pkgconf-m4-1.7.0-1.fc33.noarch libidn2-2.3.0-2.fc32.x86_64 elfutils-libelf-0.180-3.fc33.x86_64 ocaml-srpm-macros-6-2.fc32.noarch libsepol-3.0-3.fc32.x86_64 libpwquality-1.4.2-3.fc33.x86_64 file-5.39-2.fc33.x86_64 glibc-2.31.9000-17.fc33.x86_64 libdb-5.3.28-40.fc32.x86_64 cpio-2.13-5.1.fc33.x86_64 xxhash-libs-0.7.4-1.fc33.x86_64 libbrotli-1.0.7-11.fc33.x86_64 alternatives-1.11-6.fc32.x86_64 xz-libs-5.2.5-2.fc33.x86_64 make-4.3-1.fc33.x86_64 pkgconf-1.7.0-1.fc33.x86_64 perl-srpm-macros-1-37.fc33.noarch rpm-build-4.16.0-0.beta3.2.fc33.x86_64 libxcrypt-4.4.16-5.fc33.x86_64 rust-srpm-macros-15-1.fc33.noarch rpm-4.16.0-0.beta3.2.fc33.x86_64 qt5-srpm-macros-5.14.2-3.fc33.noarch libarchive-3.4.3-1.fc33.x86_64 gnat-srpm-macros-4-11.fc32.noarch bzip2-libs-1.0.8-2.fc32.x86_64 libnsl2-1.2.0-6.20180605git4a062cf.fc32.x86_64 fedora-release-33-0.9.noarch libssh-0.9.4-3.fc33.x86_64 openssl-libs-1.1.1g-11.fc33.x86_64 libpsl-0.21.0-4.fc32.x86_64 libgpg-error-1.37-1.fc33.x86_64 cracklib-2.9.6-22.fc32.x86_64 ncurses-libs-6.2-2.20200222.fc33.x86_64 gpg-pubkey-12c944d0-5d5156ab elfutils-default-yama-scope-0.180-3.fc33.noarch libtirpc-1.2.6-0.fc33.x86_64 openblas-srpm-macros-2-7.fc32.noarch zip-3.0-26.fc32.x86_64 mpfr-4.0.2-5.fc33.x86_64 ca-certificates-2020.2.41-3.fc33.noarch libeconf-0.3.5-1.fc32.x86_64 sqlite-libs-3.32.3-1.fc33.x86_64 libverto-0.3.0-9.fc32.x86_64 diffutils-3.7-4.fc32.x86_64 util-linux-2.35.2-2.fc33.x86_64 libpkgconf-1.7.0-1.fc33.x86_64 sed-4.8-1.fc33.x86_64 tar-1.32-4.fc32.x86_64 libsigsegv-2.11-10.fc32.x86_64 libuuid-2.35.2-2.fc33.x86_64 pam-1.4.0-2.fc33.x86_64 fedora-repos-rawhide-33-0.8.noarch fonts-srpm-macros-2.0.5-3.fc33.noarch python-srpm-macros-3.9-4.fc33.noarch zlib-1.2.11-21.fc32.x86_64 redhat-rpm-config-161-2.fc33.noarch libstdc++-10.1.1-2.fc33.x86_64 elfutils-debuginfod-client-0.180-3.fc33.x86_64 p11-kit-0.23.20-1.fc32.x86_64 grep-3.4-1.fc33.x86_64 gpg-pubkey-9570ff31-5e3006fb ghc-srpm-macros-1.5.0-2.fc32.noarch rpm-build-libs-4.16.0-0.beta3.2.fc33.x86_64 libunistring-0.9.10-7.fc32.x86_64 libfdisk-2.35.2-2.fc33.x86_64 setup-2.13.7-1.fc33.noarch elfutils-libs-0.180-3.fc33.x86_64 findutils-4.7.0-4.fc33.x86_64 bzip2-1.0.8-2.fc32.x86_64 gmp-6.2.0-1.fc33.x86_64 systemd-libs-245.6-2.fc33.x86_64 tzdata-2020a-2.fc33.noarch libxml2-2.9.10-5.fc33.x86_64 fedora-release-common-33-0.9.noarch binutils-gold-2.34.0-8.fc33.x86_64 libnghttp2-1.41.0-1.fc33.x86_64 libblkid-2.35.2-2.fc33.x86_64 which-2.21-19.fc33.x86_64 glibc-minimal-langpack-2.31.9000-17.fc33.x86_64 libattr-2.4.48-9.fc33.x86_64 libgomp-10.1.1-2.fc33.x86_64 gdb-minimal-9.2-2.fc33.x86_64 fedora-release-identity-basic-33-0.9.noarch curl-7.71.1-2.fc33.x86_64 glibc-common-2.31.9000-17.fc33.x86_64 coreutils-common-8.32-7.fc33.x86_64 xz-5.2.5-2.fc33.x86_64 libutempter-1.2.1-1.fc33.x86_64 pcre2-syntax-10.35-3.fc33.noarch pcre2-10.35-3.fc33.x86_64 gzip-1.10-2.fc32.x86_64 basesystem-11-9.fc32.noarch crypto-policies-20200625-1.gitb298a9e.fc33.noarch cyrus-sasl-lib-2.1.27-5.fc33.x86_64 go-srpm-macros-3.0.8-5.fc32.noarch libgcc-10.1.1-2.fc33.x86_64 lua-libs-5.4.0-2.fc33.x86_64 libacl-2.2.53-6.fc33.x86_64 pcre-8.44-1.fc33.x86_64 gawk-5.0.1-7.fc32.x86_64 dwz-0.13-2.fc32.x86_64 libcom_err-1.45.6-2.fc33.x86_64 p11-kit-trust-0.23.20-1.fc32.x86_64 libcurl-7.71.1-2.fc33.x86_64 libmount-2.35.2-2.fc33.x86_64 binutils-2.34.0-8.fc33.x86_64 nim-srpm-macros-3-2.fc32.noarch libselinux-3.0-5.fc33.x86_64 fedora-repos-33-0.8.noarch keyutils-libs-1.6-4.fc32.x86_64 shadow-utils-4.8.1-3.fc33.x86_64 libgcrypt-1.8.5-7.fc33.x86_64 fedora-gpg-keys-33-0.8.noarch zstd-1.4.5-3.fc33.x86_64 libtool-ltdl-2.4.6-34.fc33.x86_64 filesystem-3.14-2.fc32.x86_64 publicsuffix-list-dafsa-20190417-3.fc32.noarch unzip-6.0-47.fc32.x86_64 krb5-libs-1.18.2-10.fc33.x86_64 libsmartcols-2.35.2-2.fc33.x86_64 libsemanage-3.0-4.fc33.x86_64 efi-srpm-macros-4-4.fc32.noarch pkgconf-pkg-config-1.7.0-1.fc33.x86_64 popt-1.18-1.fc33.x86_64 expat-2.2.8-2.fc32.x86_64 libcap-ng-0.7.10-3.fc33.x86_64 elfutils-0.180-3.fc33.x86_64 fpc-srpm-macros-1.3-1.fc32.noarch libmetalink-0.1.3-10.fc32.x86_64 guile22-2.2.6-4.fc32.x86_64 libcap-2.26-7.fc32.x86_64 readline-8.0-4.fc32.x86_64 file-libs-5.39-2.fc33.x86_64 lz4-libs-1.9.1-2.fc32.x86_64 libtasn1-4.16.0-1.fc32.x86_64 libssh-config-0.9.4-3.fc33.noarch bash-5.0.17-1.fc33.x86_64 info-6.7-7.fc33.x86_64 audit-libs-3.0-0.20.20191104git1c2f876.fc33.x86_64 libffi-3.1-25.fc33.x86_64 coreutils-8.32-7.fc33.x86_64 patch-2.7.6-12.fc32.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1594425600 Wrote: /builddir/build/SRPMS/rdkit-2019.03.3-9.fc33.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1594438765.474299/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1594438765.474299/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1594438765.474299/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/copr-rpmbuild-brj9vpfp/rdkit.spec) Config(child) 0 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/rdkit-2019.03.3-9.fc33.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1594438793.858846 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.3 starting (python version = 3.7.6)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/rdkit-2019.03.3-9.fc33.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1594438793.858846/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.3 INFO: Mock Version: 2.3 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk Copr repository 96 kB/s | 3.7 kB 00:00 Copr repository 53 MB/s | 8.3 MB 00:00 fedora 201 kB/s | 13 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for rdkit-2019.03.3-9.fc33.src.rpm Start: build setup for rdkit-2019.03.3-9.fc33.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1594425600 Wrote: /builddir/build/SRPMS/rdkit-2019.03.3-9.fc33.src.rpm No matches found for the following disable plugin patterns: local, spacewalk Copr repository 178 kB/s | 3.7 kB 00:00 fedora 169 kB/s | 13 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: bison  x86_64 3.5-2.fc32 fedora 818 k boost-devel  x86_64 1.73.0-5.fc33 fedora 11 M cairo-devel  x86_64 1.16.0-8.fc33 fedora 240 k catch-devel  x86_64 2.11.0-2.fc32 fedora 188 k chrpath  x86_64 0.16-12.fc32 fedora 30 k cmake  x86_64 3.18.0-0.8.rc3.fc33 fedora 6.1 M eigen3-devel  noarch 3.3.7-3.fc31 fedora 883 k flex  x86_64 2.6.4-4.fc32 fedora 318 k gcc-c++  x86_64 10.1.1-2.fc33 fedora 11 M inchi-devel  x86_64 1.0.5-9.fc32 fedora 23 k java-11-openjdk-devel  x86_64 1:11.0.7.10-1.fc33 copr_base 3.3 M junit  noarch 1:4.13-1.fc33 copr_base 342 k libpq-devel  x86_64 12.3-1.fc33 fedora 98 k postgresql-server-devel  x86_64 12.3-4.fc33 fedora 1.0 M python3-devel  x86_64 3.9.0~b4-1.fc33 fedora 204 k python3-numpy  x86_64 1:1.19.0-1.fc33 fedora 4.3 M swig  x86_64 4.0.2-1.fc33 fedora 1.4 M Installing dependencies: alsa-lib  x86_64 1.2.3.1-1.fc33 fedora 474 k annobin  x86_64 9.23-1.fc33 fedora 100 k avahi-libs  x86_64 0.8-2.fc33 fedora 67 k boost  x86_64 1.73.0-5.fc33 fedora 13 k boost-atomic  x86_64 1.73.0-5.fc33 fedora 15 k boost-chrono  x86_64 1.73.0-5.fc33 fedora 28 k boost-container  x86_64 1.73.0-5.fc33 fedora 45 k boost-context  x86_64 1.73.0-5.fc33 fedora 17 k boost-contract  x86_64 1.73.0-5.fc33 fedora 50 k boost-coroutine  x86_64 1.73.0-5.fc33 fedora 34 k boost-date-time  x86_64 1.73.0-5.fc33 fedora 15 k boost-fiber  x86_64 1.73.0-5.fc33 fedora 42 k boost-filesystem  x86_64 1.73.0-5.fc33 fedora 61 k boost-graph  x86_64 1.73.0-5.fc33 fedora 114 k boost-iostreams  x86_64 1.73.0-5.fc33 fedora 39 k boost-locale  x86_64 1.73.0-5.fc33 fedora 264 k boost-log  x86_64 1.73.0-5.fc33 fedora 456 k boost-math  x86_64 1.73.0-5.fc33 fedora 302 k boost-nowide  x86_64 1.73.0-5.fc33 fedora 17 k boost-numpy3  x86_64 1.73.0-5.fc33 fedora 29 k boost-program-options  x86_64 1.73.0-5.fc33 fedora 141 k boost-python3  x86_64 1.73.0-5.fc33 fedora 101 k boost-random  x86_64 1.73.0-5.fc33 fedora 26 k boost-regex  x86_64 1.73.0-5.fc33 fedora 297 k boost-serialization  x86_64 1.73.0-5.fc33 fedora 137 k boost-stacktrace  x86_64 1.73.0-5.fc33 fedora 30 k boost-system  x86_64 1.73.0-5.fc33 fedora 15 k boost-test  x86_64 1.73.0-5.fc33 fedora 260 k boost-thread  x86_64 1.73.0-5.fc33 fedora 63 k boost-timer  x86_64 1.73.0-5.fc33 fedora 26 k boost-type_erasure  x86_64 1.73.0-5.fc33 fedora 34 k boost-wave  x86_64 1.73.0-5.fc33 fedora 225 k bzip2-devel  x86_64 1.0.8-2.fc32 fedora 214 k cairo  x86_64 1.16.0-8.fc33 fedora 712 k clang  x86_64 10.0.0-6.fc33 fedora 87 k clang-devel  x86_64 10.0.0-6.fc33 fedora 1.7 M clang-libs  x86_64 10.0.0-6.fc33 fedora 24 M clang-tools-extra  x86_64 10.0.0-6.fc33 fedora 13 M cmake-data  noarch 3.18.0-0.8.rc3.fc33 fedora 1.5 M cmake-filesystem  x86_64 3.18.0-0.8.rc3.fc33 fedora 15 k cmake-rpm-macros  noarch 3.18.0-0.8.rc3.fc33 fedora 14 k copy-jdk-configs  noarch 3.7-6.fc33 fedora 24 k cpp  x86_64 10.1.1-2.fc33 fedora 9.3 M cups-libs  x86_64 1:2.3.3-6.fc33 fedora 273 k dbus-libs  x86_64 1:1.12.20-1.fc33 fedora 162 k dejavu-sans-fonts  noarch 2.37-12.fc33 fedora 1.3 M emacs-filesystem  noarch 1:26.3-3.fc33 fedora 8.3 k fontconfig  x86_64 2.13.92-11.fc33 fedora 265 k fontconfig-devel  x86_64 2.13.92-11.fc33 fedora 129 k fonts-filesystem  noarch 1:2.0.5-3.fc33 fedora 8.5 k freetype  x86_64 2.10.1-2.fc32 fedora 384 k freetype-devel  x86_64 2.10.1-2.fc32 fedora 1.1 M gcc  x86_64 10.1.1-2.fc33 fedora 30 M gdbm-libs  x86_64 1:1.18.1-3.fc32 fedora 54 k gettext  x86_64 0.20.2-1.fc33 fedora 1.1 M gettext-libs  x86_64 0.20.2-1.fc33 fedora 287 k giflib  x86_64 5.2.1-5.fc33 fedora 49 k glib2  x86_64 2.65.0-2.fc33 fedora 2.7 M glib2-devel  x86_64 2.65.0-2.fc33 fedora 465 k glibc-devel  x86_64 2.31.9000-17.fc33 fedora 1.0 M glibc-headers-x86  noarch 2.31.9000-17.fc33 fedora 472 k gnutls  x86_64 3.6.14-2.fc33 fedora 924 k hamcrest-core  noarch 1.3-29.fc33 copr_base 51 k inchi-libs  x86_64 1.0.5-9.fc32 fedora 555 k isl  x86_64 0.16.1-10.fc32 fedora 872 k java-11-openjdk  x86_64 1:11.0.7.10-1.fc33 copr_base 253 k java-11-openjdk-headless  x86_64 1:11.0.7.10-1.fc33 copr_base 38 M javapackages-filesystem  noarch 5.3.0-11.fc33 copr_base 11 k jsoncpp  x86_64 1.9.3-1.fc33 fedora 101 k kernel-headers  x86_64 5.8.0-0.rc4.git0.1.fc33 fedora 1.2 M keyutils-libs-devel  x86_64 1.6-4.fc32 fedora 49 k krb5-devel  x86_64 1.18.2-10.fc33 fedora 141 k langpacks-core-font-en  noarch 3.0-3.fc33 fedora 9.4 k lcms2  x86_64 2.11-1.fc33 fedora 168 k libX11  x86_64 1.6.9-3.fc32 fedora 660 k libX11-common  noarch 1.6.9-3.fc32 fedora 153 k libX11-devel  x86_64 1.6.9-3.fc32 fedora 938 k libX11-xcb  x86_64 1.6.9-3.fc32 fedora 11 k libXau  x86_64 1.0.9-3.fc32 fedora 31 k libXau-devel  x86_64 1.0.9-3.fc32 fedora 14 k libXcomposite  x86_64 0.4.5-2.fc32 fedora 23 k libXext  x86_64 1.3.4-3.fc32 fedora 39 k libXext-devel  x86_64 1.3.4-3.fc32 fedora 73 k libXi  x86_64 1.7.10-3.fc32 fedora 38 k libXrender  x86_64 0.9.10-11.fc32 fedora 27 k libXrender-devel  x86_64 0.9.10-11.fc32 fedora 16 k libXtst  x86_64 1.2.3-11.fc32 fedora 20 k libblkid-devel  x86_64 2.35.2-2.fc33 fedora 17 k libcom_err-devel  x86_64 1.45.6-2.fc33 fedora 17 k libcroco  x86_64 0.6.13-3.fc32 fedora 111 k libedit  x86_64 3.1-32.20191231cvs.fc32 fedora 106 k libedit-devel  x86_64 3.1-32.20191231cvs.fc32 fedora 41 k libevent  x86_64 2.1.8-8.fc32 fedora 254 k libffi-devel  x86_64 3.1-25.fc33 fedora 24 k libfontenc  x86_64 1.1.3-12.fc32 fedora 31 k libgfortran  x86_64 10.1.1-2.fc33 fedora 819 k libicu  x86_64 67.1-1.fc33 fedora 9.7 M libicu-devel  x86_64 67.1-1.fc33 fedora 830 k libjpeg-turbo  x86_64 2.0.5-1.fc33 fedora 169 k libkadm5  x86_64 1.18.2-10.fc33 fedora 85 k libmount-devel  x86_64 2.35.2-2.fc33 fedora 18 k libmpc  x86_64 1.1.0-8.fc32 fedora 59 k libpng  x86_64 2:1.6.37-3.fc32 fedora 116 k libpng-devel  x86_64 2:1.6.37-3.fc32 fedora 291 k libpq  x86_64 12.3-1.fc33 fedora 211 k libquadmath  x86_64 10.1.1-2.fc33 fedora 198 k libquadmath-devel  x86_64 10.1.1-2.fc33 fedora 36 k libselinux-devel  x86_64 3.0-5.fc33 fedora 116 k libsepol-devel  x86_64 3.0-3.fc32 fedora 41 k libstdc++-devel  x86_64 10.1.1-2.fc33 fedora 2.0 M libtextstyle  x86_64 0.20.2-1.fc33 fedora 57 k libuv  x86_64 1:1.38.0-2.fc33 fedora 150 k libverto-devel  x86_64 0.3.0-9.fc32 fedora 14 k libxcb  x86_64 1.13.1-4.fc32 fedora 231 k libxcb-devel  x86_64 1.13.1-4.fc32 fedora 1.0 M libxcrypt-devel  x86_64 4.4.16-5.fc33 fedora 31 k libxml2-devel  x86_64 2.9.10-5.fc33 fedora 852 k lksctp-tools  x86_64 1.0.18-4.fc32 fedora 96 k llvm  x86_64 10.0.0-4.fc33 fedora 4.3 M llvm-devel  x86_64 10.0.0-4.fc33 fedora 2.7 M llvm-libs  x86_64 10.0.0-4.fc33 fedora 20 M lua  x86_64 5.4.0-2.fc33 fedora 203 k lua-posix  x86_64 34.1.1-2.fc33 fedora 132 k m4  x86_64 1.4.18-12.fc32 fedora 218 k ncurses-c++-libs  x86_64 6.2-2.20200222.fc33 fedora 38 k ncurses-devel  x86_64 6.2-2.20200222.fc33 fedora 510 k nettle  x86_64 3.6-1.fc33 fedora 416 k openblas  x86_64 0.3.9-3.fc33 fedora 30 k openblas-threads  x86_64 0.3.9-3.fc33 fedora 4.5 M pcre-cpp  x86_64 8.44-1.fc33 fedora 27 k pcre-devel  x86_64 8.44-1.fc33 fedora 472 k pcre-utf16  x86_64 8.44-1.fc33 fedora 186 k pcre-utf32  x86_64 8.44-1.fc33 fedora 176 k pcre2-devel  x86_64 10.35-3.fc33 fedora 474 k pcre2-utf16  x86_64 10.35-3.fc33 fedora 212 k pcre2-utf32  x86_64 10.35-3.fc33 fedora 200 k pixman  x86_64 0.40.0-1.fc33 fedora 270 k pixman-devel  x86_64 0.40.0-1.fc33 fedora 17 k python-pip-wheel  noarch 20.1.1-5.fc33 fedora 1.2 M python-rpm-macros  noarch 3.9-4.fc33 fedora 14 k python-setuptools-wheel  noarch 47.3.1-1.fc33 fedora 294 k python3  x86_64 3.9.0~b4-1.fc33 fedora 26 k python3-libs  x86_64 3.9.0~b4-1.fc33 fedora 7.5 M python3-rpm-generators  noarch 11-8.fc33 fedora 27 k python3-rpm-macros  noarch 3.9-4.fc33 fedora 13 k python3-setuptools  noarch 47.3.1-1.fc33 fedora 598 k rhash  x86_64 1.3.8-3.fc32 fedora 180 k ttmkfdir  x86_64 3.0.9-61.fc33 fedora 58 k tzdata-java  noarch 2020a-2.fc33 copr_base 157 k vim-filesystem  noarch 2:8.2.1081-1.fc33 fedora 22 k xml-common  noarch 0.6.3-54.fc32 fedora 31 k xorg-x11-font-utils  x86_64 1:7.5-44.fc32 fedora 104 k xorg-x11-fonts-Type1  noarch 7.5-24.fc32 fedora 500 k xorg-x11-proto-devel  noarch 2019.1-3.fc32 fedora 262 k xz-devel  x86_64 5.2.5-2.fc33 fedora 52 k zlib-devel  x86_64 1.2.11-21.fc32 fedora 45 k Transaction Summary ================================================================================ Install 173 Packages Total size: 243 M Total download size: 30 M Installed size: 1.0 G Downloading Packages: [SKIPPED] hamcrest-core-1.3-29.fc33.noarch.rpm: Already downloaded [SKIPPED] java-11-openjdk-11.0.7.10-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] java-11-openjdk-devel-11.0.7.10-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] java-11-openjdk-headless-11.0.7.10-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] javapackages-filesystem-5.3.0-11.fc33.noarch.rpm: Already downloaded [SKIPPED] junit-4.13-1.fc33.noarch.rpm: Already downloaded [SKIPPED] tzdata-java-2020a-2.fc33.noarch.rpm: Already downloaded [SKIPPED] alsa-lib-1.2.3.1-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] annobin-9.23-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.16.0-8.fc33.x86_64.rpm: Already downloaded [SKIPPED] cairo-devel-1.16.0-8.fc33.x86_64.rpm: Already downloaded [SKIPPED] clang-10.0.0-6.fc33.x86_64.rpm: Already downloaded [SKIPPED] clang-devel-10.0.0-6.fc33.x86_64.rpm: Already downloaded [SKIPPED] clang-libs-10.0.0-6.fc33.x86_64.rpm: Already downloaded [SKIPPED] clang-tools-extra-10.0.0-6.fc33.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.18.0-0.8.rc3.fc33.x86_64.rpm: Already downloaded [SKIPPED] copy-jdk-configs-3.7-6.fc33.noarch.rpm: Already downloaded [SKIPPED] cpp-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] cups-libs-2.3.3-6.fc33.x86_64.rpm: Already downloaded [SKIPPED] dbus-libs-1.12.20-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] dejavu-sans-fonts-2.37-12.fc33.noarch.rpm: Already downloaded [SKIPPED] emacs-filesystem-26.3-3.fc33.noarch.rpm: Already downloaded [SKIPPED] flex-2.6.4-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.13.92-11.fc33.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-devel-2.13.92-11.fc33.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-3.fc33.noarch.rpm: Already downloaded [SKIPPED] freetype-2.10.1-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] freetype-devel-2.10.1-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] gcc-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.18.1-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] gettext-0.20.2-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] gettext-libs-0.20.2-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] giflib-5.2.1-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] glib2-2.65.0-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] glib2-devel-2.65.0-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.31.9000-17.fc33.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.31.9000-17.fc33.noarch.rpm: Already downloaded [SKIPPED] gnutls-3.6.14-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] isl-0.16.1-10.fc32.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-5.8.0-0.rc4.git0.1.fc33.x86_64.rpm: Already downloaded [SKIPPED] keyutils-libs-devel-1.6-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] krb5-devel-1.18.2-10.fc33.x86_64.rpm: Already downloaded [SKIPPED] langpacks-core-font-en-3.0-3.fc33.noarch.rpm: Already downloaded [SKIPPED] lcms2-2.11-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.6.9-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.6.9-3.fc32.noarch.rpm: Already downloaded [SKIPPED] libX11-devel-1.6.9-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libX11-xcb-1.6.9-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXau-1.0.9-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXau-devel-1.0.9-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXcomposite-0.4.5-2.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXext-1.3.4-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXext-devel-1.3.4-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXi-1.7.10-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXrender-0.9.10-11.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXrender-devel-0.9.10-11.fc32.x86_64.rpm: Already downloaded [SKIPPED] libXtst-1.2.3-11.fc32.x86_64.rpm: Already downloaded [SKIPPED] libblkid-devel-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-devel-1.45.6-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libcroco-0.6.13-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libedit-3.1-32.20191231cvs.fc32.x86_64.rpm: Already downloaded [SKIPPED] libedit-devel-3.1-32.20191231cvs.fc32.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.8-8.fc32.x86_64.rpm: Already downloaded [SKIPPED] libffi-devel-3.1-25.fc33.x86_64.rpm: Already downloaded [SKIPPED] libfontenc-1.1.3-12.fc32.x86_64.rpm: Already downloaded [SKIPPED] libgfortran-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libicu-67.1-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libicu-devel-67.1-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libjpeg-turbo-2.0.5-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libkadm5-1.18.2-10.fc33.x86_64.rpm: Already downloaded [SKIPPED] libmount-devel-2.35.2-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.1.0-8.fc32.x86_64.rpm: Already downloaded [SKIPPED] libpng-1.6.37-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libpng-devel-1.6.37-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libpq-12.3-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libpq-devel-12.3-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libselinux-devel-3.0-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] libsepol-devel-3.0-3.fc32.x86_64.rpm: Already downloaded [SKIPPED] libstdc++-devel-10.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] libtextstyle-0.20.2-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] libverto-devel-0.3.0-9.fc32.x86_64.rpm: Already downloaded [SKIPPED] libxcb-1.13.1-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] libxcb-devel-1.13.1-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.16-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] libxml2-devel-2.9.10-5.fc33.x86_64.rpm: Already downloaded [SKIPPED] lksctp-tools-1.0.18-4.fc32.x86_64.rpm: Already downloaded [SKIPPED] llvm-10.0.0-4.fc33.x86_64.rpm: Already downloaded [SKIPPED] llvm-devel-10.0.0-4.fc33.x86_64.rpm: Already downloaded [SKIPPED] llvm-libs-10.0.0-4.fc33.x86_64.rpm: Already downloaded [SKIPPED] lua-5.4.0-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] lua-posix-34.1.1-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] m4-1.4.18-12.fc32.x86_64.rpm: Already downloaded [SKIPPED] ncurses-c++-libs-6.2-2.20200222.fc33.x86_64.rpm: Already downloaded [SKIPPED] ncurses-devel-6.2-2.20200222.fc33.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.6-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] openblas-0.3.9-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] openblas-threads-0.3.9-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre-cpp-8.44-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre-devel-8.44-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre-utf16-8.44-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre-utf32-8.44-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre2-devel-10.35-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre2-utf16-10.35-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] pcre2-utf32-10.35-3.fc33.x86_64.rpm: Already downloaded [SKIPPED] pixman-0.40.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] pixman-devel-0.40.0-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] postgresql-server-devel-12.3-4.fc33.x86_64.rpm: Already downloaded [SKIPPED] python-pip-wheel-20.1.1-5.fc33.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.9-4.fc33.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-47.3.1-1.fc33.noarch.rpm: Already downloaded [SKIPPED] python3-3.9.0~b4-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] python3-devel-3.9.0~b4-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.9.0~b4-1.fc33.x86_64.rpm: Already downloaded [SKIPPED] python3-rpm-generators-11-8.fc33.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.9-4.fc33.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-47.3.1-1.fc33.noarch.rpm: Already downloaded [SKIPPED] ttmkfdir-3.0.9-61.fc33.x86_64.rpm: Already downloaded [SKIPPED] xml-common-0.6.3-54.fc32.noarch.rpm: Already downloaded [SKIPPED] xorg-x11-font-utils-7.5-44.fc32.x86_64.rpm: Already downloaded [SKIPPED] xorg-x11-fonts-Type1-7.5-24.fc32.noarch.rpm: Already downloaded [SKIPPED] xorg-x11-proto-devel-2019.1-3.fc32.noarch.rpm: Already downloaded [SKIPPED] xz-devel-5.2.5-2.fc33.x86_64.rpm: Already downloaded [SKIPPED] zlib-devel-1.2.11-21.fc32.x86_64.rpm: Already downloaded (128/173): boost-atomic-1.73.0-5.fc33.x86_64.rp 460 kB/s | 15 kB 00:00 (129/173): bison-3.5-2.fc32.x86_64.rpm 19 MB/s | 818 kB 00:00 (130/173): boost-chrono-1.73.0-5.fc33.x86_64.rp 3.0 MB/s | 28 kB 00:00 (131/173): boost-context-1.73.0-5.fc33.x86_64.r 3.5 MB/s | 17 kB 00:00 (132/173): boost-container-1.73.0-5.fc33.x86_64 6.4 MB/s | 45 kB 00:00 (133/173): boost-1.73.0-5.fc33.x86_64.rpm 262 kB/s | 13 kB 00:00 (134/173): boost-contract-1.73.0-5.fc33.x86_64. 12 MB/s | 50 kB 00:00 (135/173): boost-coroutine-1.73.0-5.fc33.x86_64 7.8 MB/s | 34 kB 00:00 (136/173): boost-date-time-1.73.0-5.fc33.x86_64 3.6 MB/s | 15 kB 00:00 (137/173): boost-fiber-1.73.0-5.fc33.x86_64.rpm 11 MB/s | 42 kB 00:00 (138/173): boost-filesystem-1.73.0-5.fc33.x86_6 10 MB/s | 61 kB 00:00 (139/173): boost-graph-1.73.0-5.fc33.x86_64.rpm 19 MB/s | 114 kB 00:00 (140/173): boost-iostreams-1.73.0-5.fc33.x86_64 7.3 MB/s | 39 kB 00:00 (141/173): boost-log-1.73.0-5.fc33.x86_64.rpm 37 MB/s | 456 kB 00:00 (142/173): boost-locale-1.73.0-5.fc33.x86_64.rp 15 MB/s | 264 kB 00:00 (143/173): boost-math-1.73.0-5.fc33.x86_64.rpm 17 MB/s | 302 kB 00:00 (144/173): boost-nowide-1.73.0-5.fc33.x86_64.rp 1.3 MB/s | 17 kB 00:00 (145/173): boost-numpy3-1.73.0-5.fc33.x86_64.rp 6.6 MB/s | 29 kB 00:00 (146/173): boost-program-options-1.73.0-5.fc33. 22 MB/s | 141 kB 00:00 (147/173): boost-python3-1.73.0-5.fc33.x86_64.r 15 MB/s | 101 kB 00:00 (148/173): boost-random-1.73.0-5.fc33.x86_64.rp 4.9 MB/s | 26 kB 00:00 (149/173): boost-serialization-1.73.0-5.fc33.x8 21 MB/s | 137 kB 00:00 (150/173): boost-regex-1.73.0-5.fc33.x86_64.rpm 26 MB/s | 297 kB 00:00 (151/173): boost-stacktrace-1.73.0-5.fc33.x86_6 7.6 MB/s | 30 kB 00:00 (152/173): boost-test-1.73.0-5.fc33.x86_64.rpm 22 MB/s | 260 kB 00:00 (153/173): boost-system-1.73.0-5.fc33.x86_64.rp 1.0 MB/s | 15 kB 00:00 (154/173): boost-thread-1.73.0-5.fc33.x86_64.rp 3.5 MB/s | 63 kB 00:00 (155/173): boost-timer-1.73.0-5.fc33.x86_64.rpm 1.5 MB/s | 26 kB 00:00 (156/173): boost-type_erasure-1.73.0-5.fc33.x86 3.7 MB/s | 34 kB 00:00 (157/173): boost-wave-1.73.0-5.fc33.x86_64.rpm 20 MB/s | 225 kB 00:00 (158/173): chrpath-0.16-12.fc32.x86_64.rpm 10 MB/s | 30 kB 00:00 (159/173): boost-devel-1.73.0-5.fc33.x86_64.rpm 63 MB/s | 11 MB 00:00 (160/173): cmake-3.18.0-0.8.rc3.fc33.x86_64.rpm 67 MB/s | 6.1 MB 00:00 (161/173): cmake-data-3.18.0-0.8.rc3.fc33.noarc 32 MB/s | 1.5 MB 00:00 (162/173): cmake-rpm-macros-3.18.0-0.8.rc3.fc33 5.0 MB/s | 14 kB 00:00 (163/173): eigen3-devel-3.3.7-3.fc31.noarch.rpm 49 MB/s | 883 kB 00:00 (164/173): catch-devel-2.11.0-2.fc32.x86_64.rpm 1.4 MB/s | 188 kB 00:00 (165/173): jsoncpp-1.9.3-1.fc33.x86_64.rpm 18 MB/s | 101 kB 00:00 (166/173): libquadmath-devel-10.1.1-2.fc33.x86_ 14 MB/s | 36 kB 00:00 (167/173): libuv-1.38.0-2.fc33.x86_64.rpm 43 MB/s | 150 kB 00:00 (168/173): python3-numpy-1.19.0-1.fc33.x86_64.r 129 MB/s | 4.3 MB 00:00 (169/173): inchi-devel-1.0.5-9.fc32.x86_64.rpm 337 kB/s | 23 kB 00:00 (170/173): rhash-1.3.8-3.fc32.x86_64.rpm 49 MB/s | 180 kB 00:00 (171/173): inchi-libs-1.0.5-9.fc32.x86_64.rpm 8.9 MB/s | 555 kB 00:00 (172/173): vim-filesystem-8.2.1081-1.fc33.noarc 3.0 MB/s | 22 kB 00:00 (173/173): swig-4.0.2-1.fc33.x86_64.rpm 42 MB/s | 1.4 MB 00:00 -------------------------------------------------------------------------------- Total 20 MB/s | 30 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-3.7-6.fc33.noarch 1/1 Running scriptlet: java-11-openjdk-headless-1:11.0.7.10-1.fc33.x86_64 1/1 Preparing : 1/1 Installing : boost-system-1.73.0-5.fc33.x86_64 1/173 Installing : boost-chrono-1.73.0-5.fc33.x86_64 2/173 Installing : boost-thread-1.73.0-5.fc33.x86_64 3/173 Installing : cmake-filesystem-3.18.0-0.8.rc3.fc33.x86_64 4/173 Installing : boost-filesystem-1.73.0-5.fc33.x86_64 5/173 Installing : libicu-67.1-1.fc33.x86_64 6/173 Installing : boost-regex-1.73.0-5.fc33.x86_64 7/173 Installing : zlib-devel-1.2.11-21.fc32.x86_64 8/173 Installing : xorg-x11-proto-devel-2019.1-3.fc32.noarch 9/173 Installing : libpng-2:1.6.37-3.fc32.x86_64 10/173 Installing : freetype-2.10.1-2.fc32.x86_64 11/173 Installing : boost-date-time-1.73.0-5.fc33.x86_64 12/173 Installing : boost-context-1.73.0-5.fc33.x86_64 13/173 Installing : libmpc-1.1.0-8.fc32.x86_64 14/173 Installing : glib2-2.65.0-2.fc33.x86_64 15/173 Installing : emacs-filesystem-1:26.3-3.fc33.noarch 16/173 Installing : boost-python3-1.73.0-5.fc33.x86_64 17/173 Installing : boost-atomic-1.73.0-5.fc33.x86_64 18/173 Installing : javapackages-filesystem-5.3.0-11.fc33.noarch 19/173 Installing : boost-log-1.73.0-5.fc33.x86_64 20/173 Installing : boost-coroutine-1.73.0-5.fc33.x86_64 21/173 Installing : boost-fiber-1.73.0-5.fc33.x86_64 22/173 Installing : boost-wave-1.73.0-5.fc33.x86_64 23/173 Installing : libpng-devel-2:1.6.37-3.fc32.x86_64 24/173 Installing : boost-graph-1.73.0-5.fc33.x86_64 25/173 Installing : boost-locale-1.73.0-5.fc33.x86_64 26/173 Installing : libicu-devel-67.1-1.fc33.x86_64 27/173 Installing : boost-type_erasure-1.73.0-5.fc33.x86_64 28/173 Installing : boost-timer-1.73.0-5.fc33.x86_64 29/173 Installing : boost-random-1.73.0-5.fc33.x86_64 30/173 Installing : python-rpm-macros-3.9-4.fc33.noarch 31/173 Installing : pixman-0.40.0-1.fc33.x86_64 32/173 Installing : m4-1.4.18-12.fc32.x86_64 33/173 Installing : libstdc++-devel-10.1.1-2.fc33.x86_64 34/173 Installing : libquadmath-10.1.1-2.fc33.x86_64 35/173 Installing : libjpeg-turbo-2.0.5-1.fc33.x86_64 36/173 Installing : libedit-3.1-32.20191231cvs.fc32.x86_64 37/173 Installing : llvm-libs-10.0.0-4.fc33.x86_64 38/173 Installing : clang-libs-10.0.0-6.fc33.x86_64 39/173 Installing : libXau-1.0.9-3.fc32.x86_64 40/173 Installing : libxcb-1.13.1-4.fc32.x86_64 41/173 Installing : fonts-filesystem-1:2.0.5-3.fc33.noarch 42/173 Installing : dejavu-sans-fonts-2.37-12.fc33.noarch 43/173 Installing : boost-test-1.73.0-5.fc33.x86_64 44/173 Installing : boost-stacktrace-1.73.0-5.fc33.x86_64 45/173 Installing : boost-serialization-1.73.0-5.fc33.x86_64 46/173 Installing : boost-program-options-1.73.0-5.fc33.x86_64 47/173 Installing : boost-nowide-1.73.0-5.fc33.x86_64 48/173 Installing : boost-math-1.73.0-5.fc33.x86_64 49/173 Installing : boost-iostreams-1.73.0-5.fc33.x86_64 50/173 Installing : boost-contract-1.73.0-5.fc33.x86_64 51/173 Installing : boost-container-1.73.0-5.fc33.x86_64 52/173 Installing : langpacks-core-font-en-3.0-3.fc33.noarch 53/173 Installing : libXau-devel-1.0.9-3.fc32.x86_64 54/173 Installing : libxcb-devel-1.13.1-4.fc32.x86_64 55/173 Installing : libgfortran-10.1.1-2.fc33.x86_64 56/173 Installing : pixman-devel-0.40.0-1.fc33.x86_64 57/173 Installing : python3-rpm-macros-3.9-4.fc33.noarch 58/173 Installing : libcroco-0.6.13-3.fc32.x86_64 59/173 Installing : libtextstyle-0.20.2-1.fc33.x86_64 60/173 Installing : gettext-libs-0.20.2-1.fc33.x86_64 61/173 Installing : gettext-0.20.2-1.fc33.x86_64 62/173 Installing : cpp-10.1.1-2.fc33.x86_64 63/173 Installing : ttmkfdir-3.0.9-61.fc33.x86_64 64/173 Installing : xz-devel-5.2.5-2.fc33.x86_64 65/173 Installing : libxml2-devel-2.9.10-5.fc33.x86_64 66/173 Running scriptlet: xml-common-0.6.3-54.fc32.noarch 67/173 Installing : xml-common-0.6.3-54.fc32.noarch 67/173 Installing : fontconfig-2.13.92-11.fc33.x86_64 68/173 Running scriptlet: fontconfig-2.13.92-11.fc33.x86_64 68/173 Installing : vim-filesystem-2:8.2.1081-1.fc33.noarch 69/173 Installing : rhash-1.3.8-3.fc32.x86_64 70/173 Installing : python-setuptools-wheel-47.3.1-1.fc33.noarch 71/173 Installing : python-pip-wheel-20.1.1-5.fc33.noarch 72/173 Installing : pcre2-utf32-10.35-3.fc33.x86_64 73/173 Installing : pcre2-utf16-10.35-3.fc33.x86_64 74/173 Installing : pcre2-devel-10.35-3.fc33.x86_64 75/173 Installing : pcre-utf32-8.44-1.fc33.x86_64 76/173 Installing : pcre-utf16-8.44-1.fc33.x86_64 77/173 Installing : pcre-cpp-8.44-1.fc33.x86_64 78/173 Installing : pcre-devel-8.44-1.fc33.x86_64 79/173 Installing : openblas-0.3.9-3.fc33.x86_64 80/173 Installing : openblas-threads-0.3.9-3.fc33.x86_64 81/173 Installing : nettle-3.6-1.fc33.x86_64 82/173 Installing : gnutls-3.6.14-2.fc33.x86_64 83/173 Installing : ncurses-c++-libs-6.2-2.20200222.fc33.x86_64 84/173 Installing : ncurses-devel-6.2-2.20200222.fc33.x86_64 85/173 Installing : libedit-devel-3.1-32.20191231cvs.fc32.x86_64 86/173 Installing : lua-posix-34.1.1-2.fc33.x86_64 87/173 Installing : lua-5.4.0-2.fc33.x86_64 88/173 Installing : copy-jdk-configs-3.7-6.fc33.noarch 89/173 Installing : lksctp-tools-1.0.18-4.fc32.x86_64 90/173 Running scriptlet: lksctp-tools-1.0.18-4.fc32.x86_64 90/173 Installing : libverto-devel-0.3.0-9.fc32.x86_64 91/173 Installing : libuv-1:1.38.0-2.fc33.x86_64 92/173 Installing : libsepol-devel-3.0-3.fc32.x86_64 93/173 Installing : libselinux-devel-3.0-5.fc33.x86_64 94/173 Installing : libpq-12.3-1.fc33.x86_64 95/173 Installing : libkadm5-1.18.2-10.fc33.x86_64 96/173 Installing : libfontenc-1.1.3-12.fc32.x86_64 97/173 Installing : xorg-x11-font-utils-1:7.5-44.fc32.x86_64 98/173 Installing : xorg-x11-fonts-Type1-7.5-24.fc32.noarch 99/173 Running scriptlet: xorg-x11-fonts-Type1-7.5-24.fc32.noarch 99/173 Installing : libffi-devel-3.1-25.fc33.x86_64 100/173 Installing : libevent-2.1.8-8.fc32.x86_64 101/173 Installing : libcom_err-devel-1.45.6-2.fc33.x86_64 102/173 Installing : libblkid-devel-2.35.2-2.fc33.x86_64 103/173 Installing : libmount-devel-2.35.2-2.fc33.x86_64 104/173 Installing : libX11-xcb-1.6.9-3.fc32.x86_64 105/173 Installing : libX11-common-1.6.9-3.fc32.noarch 106/173 Installing : libX11-1.6.9-3.fc32.x86_64 107/173 Installing : libXext-1.3.4-3.fc32.x86_64 108/173 Installing : libX11-devel-1.6.9-3.fc32.x86_64 109/173 Installing : libXrender-0.9.10-11.fc32.x86_64 110/173 Installing : libXi-1.7.10-3.fc32.x86_64 111/173 Installing : libXtst-1.2.3-11.fc32.x86_64 112/173 Installing : cairo-1.16.0-8.fc33.x86_64 113/173 Installing : libXrender-devel-0.9.10-11.fc32.x86_64 114/173 Installing : libXext-devel-1.3.4-3.fc32.x86_64 115/173 Installing : libXcomposite-0.4.5-2.fc32.x86_64 116/173 Installing : lcms2-2.11-1.fc33.x86_64 117/173 Installing : keyutils-libs-devel-1.6-4.fc32.x86_64 118/173 Installing : krb5-devel-1.18.2-10.fc33.x86_64 119/173 Installing : kernel-headers-5.8.0-0.rc4.git0.1.fc33.x86_64 120/173 Installing : jsoncpp-1.9.3-1.fc33.x86_64 121/173 Installing : isl-0.16.1-10.fc32.x86_64 122/173 Installing : inchi-libs-1.0.5-9.fc32.x86_64 123/173 Installing : glibc-headers-x86-2.31.9000-17.fc33.noarch 124/173 Installing : libxcrypt-devel-4.4.16-5.fc33.x86_64 125/173 Installing : glibc-devel-2.31.9000-17.fc33.x86_64 126/173 Installing : gcc-10.1.1-2.fc33.x86_64 127/173 Installing : gcc-c++-10.1.1-2.fc33.x86_64 128/173 Installing : clang-10.0.0-6.fc33.x86_64 129/173 Installing : libquadmath-devel-10.1.1-2.fc33.x86_64 130/173 Installing : giflib-5.2.1-5.fc33.x86_64 131/173 Installing : gdbm-libs-1:1.18.1-3.fc32.x86_64 132/173 Installing : python3-setuptools-47.3.1-1.fc33.noarch 133/173 Installing : python3-3.9.0~b4-1.fc33.x86_64 134/173 Installing : python3-libs-3.9.0~b4-1.fc33.x86_64 135/173 Installing : cmake-rpm-macros-3.18.0-0.8.rc3.fc33.noarch 136/173 Installing : cmake-data-3.18.0-0.8.rc3.fc33.noarch 137/173 Installing : cmake-3.18.0-0.8.rc3.fc33.x86_64 138/173 Installing : clang-tools-extra-10.0.0-6.fc33.x86_64 139/173 Installing : clang-devel-10.0.0-6.fc33.x86_64 140/173 Installing : glib2-devel-2.65.0-2.fc33.x86_64 141/173 Installing : llvm-10.0.0-4.fc33.x86_64 142/173 Installing : llvm-devel-10.0.0-4.fc33.x86_64 143/173 Running scriptlet: llvm-devel-10.0.0-4.fc33.x86_64 143/173 Installing : python3-numpy-1:1.19.0-1.fc33.x86_64 144/173 Installing : boost-numpy3-1.73.0-5.fc33.x86_64 145/173 Installing : boost-1.73.0-5.fc33.x86_64 146/173 Installing : python3-rpm-generators-11-8.fc33.noarch 147/173 Installing : dbus-libs-1:1.12.20-1.fc33.x86_64 148/173 Installing : avahi-libs-0.8-2.fc33.x86_64 149/173 Installing : cups-libs-1:2.3.3-6.fc33.x86_64 150/173 Installing : bzip2-devel-1.0.8-2.fc32.x86_64 151/173 Installing : freetype-devel-2.10.1-2.fc32.x86_64 152/173 Installing : fontconfig-devel-2.13.92-11.fc33.x86_64 153/173 Installing : alsa-lib-1.2.3.1-1.fc33.x86_64 154/173 Installing : tzdata-java-2020a-2.fc33.noarch 155/173 Installing : java-11-openjdk-headless-1:11.0.7.10-1.fc33.x86_ 156/173 Running scriptlet: java-11-openjdk-headless-1:11.0.7.10-1.fc33.x86_ 156/173 Installing : hamcrest-core-1.3-29.fc33.noarch 157/173 Installing : java-11-openjdk-1:11.0.7.10-1.fc33.x86_64 158/173 Running scriptlet: java-11-openjdk-1:11.0.7.10-1.fc33.x86_64 158/173 Installing : java-11-openjdk-devel-1:11.0.7.10-1.fc33.x86_64 159/173 Running scriptlet: java-11-openjdk-devel-1:11.0.7.10-1.fc33.x86_64 159/173 Installing : junit-1:4.13-1.fc33.noarch 160/173 Installing : cairo-devel-1.16.0-8.fc33.x86_64 161/173 Installing : python3-devel-3.9.0~b4-1.fc33.x86_64 162/173 Installing : boost-devel-1.73.0-5.fc33.x86_64 163/173 Installing : postgresql-server-devel-12.3-4.fc33.x86_64 164/173 Installing : annobin-9.23-1.fc33.x86_64 165/173 Installing : inchi-devel-1.0.5-9.fc32.x86_64 166/173 Installing : libpq-devel-12.3-1.fc33.x86_64 167/173 Installing : bison-3.5-2.fc32.x86_64 168/173 Installing : flex-2.6.4-4.fc32.x86_64 169/173 Installing : catch-devel-2.11.0-2.fc32.x86_64 170/173 Installing : swig-4.0.2-1.fc33.x86_64 171/173 Installing : eigen3-devel-3.3.7-3.fc31.noarch 172/173 Installing : chrpath-0.16-12.fc32.x86_64 173/173 Running scriptlet: fontconfig-2.13.92-11.fc33.x86_64 173/173 Running scriptlet: copy-jdk-configs-3.7-6.fc33.noarch 173/173 Running scriptlet: java-11-openjdk-1:11.0.7.10-1.fc33.x86_64 173/173 Running scriptlet: java-11-openjdk-devel-1:11.0.7.10-1.fc33.x86_64 173/173 Running scriptlet: chrpath-0.16-12.fc32.x86_64 173/173 Verifying : hamcrest-core-1.3-29.fc33.noarch 1/173 Verifying : java-11-openjdk-1:11.0.7.10-1.fc33.x86_64 2/173 Verifying : java-11-openjdk-devel-1:11.0.7.10-1.fc33.x86_64 3/173 Verifying : java-11-openjdk-headless-1:11.0.7.10-1.fc33.x86_ 4/173 Verifying : javapackages-filesystem-5.3.0-11.fc33.noarch 5/173 Verifying : junit-1:4.13-1.fc33.noarch 6/173 Verifying : tzdata-java-2020a-2.fc33.noarch 7/173 Verifying : alsa-lib-1.2.3.1-1.fc33.x86_64 8/173 Verifying : annobin-9.23-1.fc33.x86_64 9/173 Verifying : avahi-libs-0.8-2.fc33.x86_64 10/173 Verifying : bison-3.5-2.fc32.x86_64 11/173 Verifying : boost-1.73.0-5.fc33.x86_64 12/173 Verifying : boost-atomic-1.73.0-5.fc33.x86_64 13/173 Verifying : boost-chrono-1.73.0-5.fc33.x86_64 14/173 Verifying : boost-container-1.73.0-5.fc33.x86_64 15/173 Verifying : boost-context-1.73.0-5.fc33.x86_64 16/173 Verifying : boost-contract-1.73.0-5.fc33.x86_64 17/173 Verifying : boost-coroutine-1.73.0-5.fc33.x86_64 18/173 Verifying : boost-date-time-1.73.0-5.fc33.x86_64 19/173 Verifying : boost-devel-1.73.0-5.fc33.x86_64 20/173 Verifying : boost-fiber-1.73.0-5.fc33.x86_64 21/173 Verifying : boost-filesystem-1.73.0-5.fc33.x86_64 22/173 Verifying : boost-graph-1.73.0-5.fc33.x86_64 23/173 Verifying : boost-iostreams-1.73.0-5.fc33.x86_64 24/173 Verifying : boost-locale-1.73.0-5.fc33.x86_64 25/173 Verifying : boost-log-1.73.0-5.fc33.x86_64 26/173 Verifying : boost-math-1.73.0-5.fc33.x86_64 27/173 Verifying : boost-nowide-1.73.0-5.fc33.x86_64 28/173 Verifying : boost-numpy3-1.73.0-5.fc33.x86_64 29/173 Verifying : boost-program-options-1.73.0-5.fc33.x86_64 30/173 Verifying : boost-python3-1.73.0-5.fc33.x86_64 31/173 Verifying : boost-random-1.73.0-5.fc33.x86_64 32/173 Verifying : boost-regex-1.73.0-5.fc33.x86_64 33/173 Verifying : boost-serialization-1.73.0-5.fc33.x86_64 34/173 Verifying : boost-stacktrace-1.73.0-5.fc33.x86_64 35/173 Verifying : boost-system-1.73.0-5.fc33.x86_64 36/173 Verifying : boost-test-1.73.0-5.fc33.x86_64 37/173 Verifying : boost-thread-1.73.0-5.fc33.x86_64 38/173 Verifying : boost-timer-1.73.0-5.fc33.x86_64 39/173 Verifying : boost-type_erasure-1.73.0-5.fc33.x86_64 40/173 Verifying : boost-wave-1.73.0-5.fc33.x86_64 41/173 Verifying : bzip2-devel-1.0.8-2.fc32.x86_64 42/173 Verifying : cairo-1.16.0-8.fc33.x86_64 43/173 Verifying : cairo-devel-1.16.0-8.fc33.x86_64 44/173 Verifying : catch-devel-2.11.0-2.fc32.x86_64 45/173 Verifying : chrpath-0.16-12.fc32.x86_64 46/173 Verifying : clang-10.0.0-6.fc33.x86_64 47/173 Verifying : clang-devel-10.0.0-6.fc33.x86_64 48/173 Verifying : clang-libs-10.0.0-6.fc33.x86_64 49/173 Verifying : clang-tools-extra-10.0.0-6.fc33.x86_64 50/173 Verifying : cmake-3.18.0-0.8.rc3.fc33.x86_64 51/173 Verifying : cmake-data-3.18.0-0.8.rc3.fc33.noarch 52/173 Verifying : cmake-filesystem-3.18.0-0.8.rc3.fc33.x86_64 53/173 Verifying : cmake-rpm-macros-3.18.0-0.8.rc3.fc33.noarch 54/173 Verifying : copy-jdk-configs-3.7-6.fc33.noarch 55/173 Verifying : cpp-10.1.1-2.fc33.x86_64 56/173 Verifying : cups-libs-1:2.3.3-6.fc33.x86_64 57/173 Verifying : dbus-libs-1:1.12.20-1.fc33.x86_64 58/173 Verifying : dejavu-sans-fonts-2.37-12.fc33.noarch 59/173 Verifying : eigen3-devel-3.3.7-3.fc31.noarch 60/173 Verifying : emacs-filesystem-1:26.3-3.fc33.noarch 61/173 Verifying : flex-2.6.4-4.fc32.x86_64 62/173 Verifying : fontconfig-2.13.92-11.fc33.x86_64 63/173 Verifying : fontconfig-devel-2.13.92-11.fc33.x86_64 64/173 Verifying : fonts-filesystem-1:2.0.5-3.fc33.noarch 65/173 Verifying : freetype-2.10.1-2.fc32.x86_64 66/173 Verifying : freetype-devel-2.10.1-2.fc32.x86_64 67/173 Verifying : gcc-10.1.1-2.fc33.x86_64 68/173 Verifying : gcc-c++-10.1.1-2.fc33.x86_64 69/173 Verifying : gdbm-libs-1:1.18.1-3.fc32.x86_64 70/173 Verifying : gettext-0.20.2-1.fc33.x86_64 71/173 Verifying : gettext-libs-0.20.2-1.fc33.x86_64 72/173 Verifying : giflib-5.2.1-5.fc33.x86_64 73/173 Verifying : glib2-2.65.0-2.fc33.x86_64 74/173 Verifying : glib2-devel-2.65.0-2.fc33.x86_64 75/173 Verifying : glibc-devel-2.31.9000-17.fc33.x86_64 76/173 Verifying : glibc-headers-x86-2.31.9000-17.fc33.noarch 77/173 Verifying : gnutls-3.6.14-2.fc33.x86_64 78/173 Verifying : inchi-devel-1.0.5-9.fc32.x86_64 79/173 Verifying : inchi-libs-1.0.5-9.fc32.x86_64 80/173 Verifying : isl-0.16.1-10.fc32.x86_64 81/173 Verifying : jsoncpp-1.9.3-1.fc33.x86_64 82/173 Verifying : kernel-headers-5.8.0-0.rc4.git0.1.fc33.x86_64 83/173 Verifying : keyutils-libs-devel-1.6-4.fc32.x86_64 84/173 Verifying : krb5-devel-1.18.2-10.fc33.x86_64 85/173 Verifying : langpacks-core-font-en-3.0-3.fc33.noarch 86/173 Verifying : lcms2-2.11-1.fc33.x86_64 87/173 Verifying : libX11-1.6.9-3.fc32.x86_64 88/173 Verifying : libX11-common-1.6.9-3.fc32.noarch 89/173 Verifying : libX11-devel-1.6.9-3.fc32.x86_64 90/173 Verifying : libX11-xcb-1.6.9-3.fc32.x86_64 91/173 Verifying : libXau-1.0.9-3.fc32.x86_64 92/173 Verifying : libXau-devel-1.0.9-3.fc32.x86_64 93/173 Verifying : libXcomposite-0.4.5-2.fc32.x86_64 94/173 Verifying : libXext-1.3.4-3.fc32.x86_64 95/173 Verifying : libXext-devel-1.3.4-3.fc32.x86_64 96/173 Verifying : libXi-1.7.10-3.fc32.x86_64 97/173 Verifying : libXrender-0.9.10-11.fc32.x86_64 98/173 Verifying : libXrender-devel-0.9.10-11.fc32.x86_64 99/173 Verifying : libXtst-1.2.3-11.fc32.x86_64 100/173 Verifying : libblkid-devel-2.35.2-2.fc33.x86_64 101/173 Verifying : libcom_err-devel-1.45.6-2.fc33.x86_64 102/173 Verifying : libcroco-0.6.13-3.fc32.x86_64 103/173 Verifying : libedit-3.1-32.20191231cvs.fc32.x86_64 104/173 Verifying : libedit-devel-3.1-32.20191231cvs.fc32.x86_64 105/173 Verifying : libevent-2.1.8-8.fc32.x86_64 106/173 Verifying : libffi-devel-3.1-25.fc33.x86_64 107/173 Verifying : libfontenc-1.1.3-12.fc32.x86_64 108/173 Verifying : libgfortran-10.1.1-2.fc33.x86_64 109/173 Verifying : libicu-67.1-1.fc33.x86_64 110/173 Verifying : libicu-devel-67.1-1.fc33.x86_64 111/173 Verifying : libjpeg-turbo-2.0.5-1.fc33.x86_64 112/173 Verifying : libkadm5-1.18.2-10.fc33.x86_64 113/173 Verifying : libmount-devel-2.35.2-2.fc33.x86_64 114/173 Verifying : libmpc-1.1.0-8.fc32.x86_64 115/173 Verifying : libpng-2:1.6.37-3.fc32.x86_64 116/173 Verifying : libpng-devel-2:1.6.37-3.fc32.x86_64 117/173 Verifying : libpq-12.3-1.fc33.x86_64 118/173 Verifying : libpq-devel-12.3-1.fc33.x86_64 119/173 Verifying : libquadmath-10.1.1-2.fc33.x86_64 120/173 Verifying : libquadmath-devel-10.1.1-2.fc33.x86_64 121/173 Verifying : libselinux-devel-3.0-5.fc33.x86_64 122/173 Verifying : libsepol-devel-3.0-3.fc32.x86_64 123/173 Verifying : libstdc++-devel-10.1.1-2.fc33.x86_64 124/173 Verifying : libtextstyle-0.20.2-1.fc33.x86_64 125/173 Verifying : libuv-1:1.38.0-2.fc33.x86_64 126/173 Verifying : libverto-devel-0.3.0-9.fc32.x86_64 127/173 Verifying : libxcb-1.13.1-4.fc32.x86_64 128/173 Verifying : libxcb-devel-1.13.1-4.fc32.x86_64 129/173 Verifying : libxcrypt-devel-4.4.16-5.fc33.x86_64 130/173 Verifying : libxml2-devel-2.9.10-5.fc33.x86_64 131/173 Verifying : lksctp-tools-1.0.18-4.fc32.x86_64 132/173 Verifying : llvm-10.0.0-4.fc33.x86_64 133/173 Verifying : llvm-devel-10.0.0-4.fc33.x86_64 134/173 Verifying : llvm-libs-10.0.0-4.fc33.x86_64 135/173 Verifying : lua-5.4.0-2.fc33.x86_64 136/173 Verifying : lua-posix-34.1.1-2.fc33.x86_64 137/173 Verifying : m4-1.4.18-12.fc32.x86_64 138/173 Verifying : ncurses-c++-libs-6.2-2.20200222.fc33.x86_64 139/173 Verifying : ncurses-devel-6.2-2.20200222.fc33.x86_64 140/173 Verifying : nettle-3.6-1.fc33.x86_64 141/173 Verifying : openblas-0.3.9-3.fc33.x86_64 142/173 Verifying : openblas-threads-0.3.9-3.fc33.x86_64 143/173 Verifying : pcre-cpp-8.44-1.fc33.x86_64 144/173 Verifying : pcre-devel-8.44-1.fc33.x86_64 145/173 Verifying : pcre-utf16-8.44-1.fc33.x86_64 146/173 Verifying : pcre-utf32-8.44-1.fc33.x86_64 147/173 Verifying : pcre2-devel-10.35-3.fc33.x86_64 148/173 Verifying : pcre2-utf16-10.35-3.fc33.x86_64 149/173 Verifying : pcre2-utf32-10.35-3.fc33.x86_64 150/173 Verifying : pixman-0.40.0-1.fc33.x86_64 151/173 Verifying : pixman-devel-0.40.0-1.fc33.x86_64 152/173 Verifying : postgresql-server-devel-12.3-4.fc33.x86_64 153/173 Verifying : python-pip-wheel-20.1.1-5.fc33.noarch 154/173 Verifying : python-rpm-macros-3.9-4.fc33.noarch 155/173 Verifying : python-setuptools-wheel-47.3.1-1.fc33.noarch 156/173 Verifying : python3-3.9.0~b4-1.fc33.x86_64 157/173 Verifying : python3-devel-3.9.0~b4-1.fc33.x86_64 158/173 Verifying : python3-libs-3.9.0~b4-1.fc33.x86_64 159/173 Verifying : python3-numpy-1:1.19.0-1.fc33.x86_64 160/173 Verifying : python3-rpm-generators-11-8.fc33.noarch 161/173 Verifying : python3-rpm-macros-3.9-4.fc33.noarch 162/173 Verifying : python3-setuptools-47.3.1-1.fc33.noarch 163/173 Verifying : rhash-1.3.8-3.fc32.x86_64 164/173 Verifying : swig-4.0.2-1.fc33.x86_64 165/173 Verifying : ttmkfdir-3.0.9-61.fc33.x86_64 166/173 Verifying : vim-filesystem-2:8.2.1081-1.fc33.noarch 167/173 Verifying : xml-common-0.6.3-54.fc32.noarch 168/173 Verifying : xorg-x11-font-utils-1:7.5-44.fc32.x86_64 169/173 Verifying : xorg-x11-fonts-Type1-7.5-24.fc32.noarch 170/173 Verifying : xorg-x11-proto-devel-2019.1-3.fc32.noarch 171/173 Verifying : xz-devel-5.2.5-2.fc33.x86_64 172/173 Verifying : zlib-devel-1.2.11-21.fc32.x86_64 173/173 Installed: alsa-lib-1.2.3.1-1.fc33.x86_64 annobin-9.23-1.fc33.x86_64 avahi-libs-0.8-2.fc33.x86_64 bison-3.5-2.fc32.x86_64 boost-1.73.0-5.fc33.x86_64 boost-atomic-1.73.0-5.fc33.x86_64 boost-chrono-1.73.0-5.fc33.x86_64 boost-container-1.73.0-5.fc33.x86_64 boost-context-1.73.0-5.fc33.x86_64 boost-contract-1.73.0-5.fc33.x86_64 boost-coroutine-1.73.0-5.fc33.x86_64 boost-date-time-1.73.0-5.fc33.x86_64 boost-devel-1.73.0-5.fc33.x86_64 boost-fiber-1.73.0-5.fc33.x86_64 boost-filesystem-1.73.0-5.fc33.x86_64 boost-graph-1.73.0-5.fc33.x86_64 boost-iostreams-1.73.0-5.fc33.x86_64 boost-locale-1.73.0-5.fc33.x86_64 boost-log-1.73.0-5.fc33.x86_64 boost-math-1.73.0-5.fc33.x86_64 boost-nowide-1.73.0-5.fc33.x86_64 boost-numpy3-1.73.0-5.fc33.x86_64 boost-program-options-1.73.0-5.fc33.x86_64 boost-python3-1.73.0-5.fc33.x86_64 boost-random-1.73.0-5.fc33.x86_64 boost-regex-1.73.0-5.fc33.x86_64 boost-serialization-1.73.0-5.fc33.x86_64 boost-stacktrace-1.73.0-5.fc33.x86_64 boost-system-1.73.0-5.fc33.x86_64 boost-test-1.73.0-5.fc33.x86_64 boost-thread-1.73.0-5.fc33.x86_64 boost-timer-1.73.0-5.fc33.x86_64 boost-type_erasure-1.73.0-5.fc33.x86_64 boost-wave-1.73.0-5.fc33.x86_64 bzip2-devel-1.0.8-2.fc32.x86_64 cairo-1.16.0-8.fc33.x86_64 cairo-devel-1.16.0-8.fc33.x86_64 catch-devel-2.11.0-2.fc32.x86_64 chrpath-0.16-12.fc32.x86_64 clang-10.0.0-6.fc33.x86_64 clang-devel-10.0.0-6.fc33.x86_64 clang-libs-10.0.0-6.fc33.x86_64 clang-tools-extra-10.0.0-6.fc33.x86_64 cmake-3.18.0-0.8.rc3.fc33.x86_64 cmake-data-3.18.0-0.8.rc3.fc33.noarch cmake-filesystem-3.18.0-0.8.rc3.fc33.x86_64 cmake-rpm-macros-3.18.0-0.8.rc3.fc33.noarch copy-jdk-configs-3.7-6.fc33.noarch cpp-10.1.1-2.fc33.x86_64 cups-libs-1:2.3.3-6.fc33.x86_64 dbus-libs-1:1.12.20-1.fc33.x86_64 dejavu-sans-fonts-2.37-12.fc33.noarch eigen3-devel-3.3.7-3.fc31.noarch emacs-filesystem-1:26.3-3.fc33.noarch flex-2.6.4-4.fc32.x86_64 fontconfig-2.13.92-11.fc33.x86_64 fontconfig-devel-2.13.92-11.fc33.x86_64 fonts-filesystem-1:2.0.5-3.fc33.noarch freetype-2.10.1-2.fc32.x86_64 freetype-devel-2.10.1-2.fc32.x86_64 gcc-10.1.1-2.fc33.x86_64 gcc-c++-10.1.1-2.fc33.x86_64 gdbm-libs-1:1.18.1-3.fc32.x86_64 gettext-0.20.2-1.fc33.x86_64 gettext-libs-0.20.2-1.fc33.x86_64 giflib-5.2.1-5.fc33.x86_64 glib2-2.65.0-2.fc33.x86_64 glib2-devel-2.65.0-2.fc33.x86_64 glibc-devel-2.31.9000-17.fc33.x86_64 glibc-headers-x86-2.31.9000-17.fc33.noarch gnutls-3.6.14-2.fc33.x86_64 hamcrest-core-1.3-29.fc33.noarch inchi-devel-1.0.5-9.fc32.x86_64 inchi-libs-1.0.5-9.fc32.x86_64 isl-0.16.1-10.fc32.x86_64 java-11-openjdk-1:11.0.7.10-1.fc33.x86_64 java-11-openjdk-devel-1:11.0.7.10-1.fc33.x86_64 java-11-openjdk-headless-1:11.0.7.10-1.fc33.x86_64 javapackages-filesystem-5.3.0-11.fc33.noarch jsoncpp-1.9.3-1.fc33.x86_64 junit-1:4.13-1.fc33.noarch kernel-headers-5.8.0-0.rc4.git0.1.fc33.x86_64 keyutils-libs-devel-1.6-4.fc32.x86_64 krb5-devel-1.18.2-10.fc33.x86_64 langpacks-core-font-en-3.0-3.fc33.noarch lcms2-2.11-1.fc33.x86_64 libX11-1.6.9-3.fc32.x86_64 libX11-common-1.6.9-3.fc32.noarch libX11-devel-1.6.9-3.fc32.x86_64 libX11-xcb-1.6.9-3.fc32.x86_64 libXau-1.0.9-3.fc32.x86_64 libXau-devel-1.0.9-3.fc32.x86_64 libXcomposite-0.4.5-2.fc32.x86_64 libXext-1.3.4-3.fc32.x86_64 libXext-devel-1.3.4-3.fc32.x86_64 libXi-1.7.10-3.fc32.x86_64 libXrender-0.9.10-11.fc32.x86_64 libXrender-devel-0.9.10-11.fc32.x86_64 libXtst-1.2.3-11.fc32.x86_64 libblkid-devel-2.35.2-2.fc33.x86_64 libcom_err-devel-1.45.6-2.fc33.x86_64 libcroco-0.6.13-3.fc32.x86_64 libedit-3.1-32.20191231cvs.fc32.x86_64 libedit-devel-3.1-32.20191231cvs.fc32.x86_64 libevent-2.1.8-8.fc32.x86_64 libffi-devel-3.1-25.fc33.x86_64 libfontenc-1.1.3-12.fc32.x86_64 libgfortran-10.1.1-2.fc33.x86_64 libicu-67.1-1.fc33.x86_64 libicu-devel-67.1-1.fc33.x86_64 libjpeg-turbo-2.0.5-1.fc33.x86_64 libkadm5-1.18.2-10.fc33.x86_64 libmount-devel-2.35.2-2.fc33.x86_64 libmpc-1.1.0-8.fc32.x86_64 libpng-2:1.6.37-3.fc32.x86_64 libpng-devel-2:1.6.37-3.fc32.x86_64 libpq-12.3-1.fc33.x86_64 libpq-devel-12.3-1.fc33.x86_64 libquadmath-10.1.1-2.fc33.x86_64 libquadmath-devel-10.1.1-2.fc33.x86_64 libselinux-devel-3.0-5.fc33.x86_64 libsepol-devel-3.0-3.fc32.x86_64 libstdc++-devel-10.1.1-2.fc33.x86_64 libtextstyle-0.20.2-1.fc33.x86_64 libuv-1:1.38.0-2.fc33.x86_64 libverto-devel-0.3.0-9.fc32.x86_64 libxcb-1.13.1-4.fc32.x86_64 libxcb-devel-1.13.1-4.fc32.x86_64 libxcrypt-devel-4.4.16-5.fc33.x86_64 libxml2-devel-2.9.10-5.fc33.x86_64 lksctp-tools-1.0.18-4.fc32.x86_64 llvm-10.0.0-4.fc33.x86_64 llvm-devel-10.0.0-4.fc33.x86_64 llvm-libs-10.0.0-4.fc33.x86_64 lua-5.4.0-2.fc33.x86_64 lua-posix-34.1.1-2.fc33.x86_64 m4-1.4.18-12.fc32.x86_64 ncurses-c++-libs-6.2-2.20200222.fc33.x86_64 ncurses-devel-6.2-2.20200222.fc33.x86_64 nettle-3.6-1.fc33.x86_64 openblas-0.3.9-3.fc33.x86_64 openblas-threads-0.3.9-3.fc33.x86_64 pcre-cpp-8.44-1.fc33.x86_64 pcre-devel-8.44-1.fc33.x86_64 pcre-utf16-8.44-1.fc33.x86_64 pcre-utf32-8.44-1.fc33.x86_64 pcre2-devel-10.35-3.fc33.x86_64 pcre2-utf16-10.35-3.fc33.x86_64 pcre2-utf32-10.35-3.fc33.x86_64 pixman-0.40.0-1.fc33.x86_64 pixman-devel-0.40.0-1.fc33.x86_64 postgresql-server-devel-12.3-4.fc33.x86_64 python-pip-wheel-20.1.1-5.fc33.noarch python-rpm-macros-3.9-4.fc33.noarch python-setuptools-wheel-47.3.1-1.fc33.noarch python3-3.9.0~b4-1.fc33.x86_64 python3-devel-3.9.0~b4-1.fc33.x86_64 python3-libs-3.9.0~b4-1.fc33.x86_64 python3-numpy-1:1.19.0-1.fc33.x86_64 python3-rpm-generators-11-8.fc33.noarch python3-rpm-macros-3.9-4.fc33.noarch python3-setuptools-47.3.1-1.fc33.noarch rhash-1.3.8-3.fc32.x86_64 swig-4.0.2-1.fc33.x86_64 ttmkfdir-3.0.9-61.fc33.x86_64 tzdata-java-2020a-2.fc33.noarch vim-filesystem-2:8.2.1081-1.fc33.noarch xml-common-0.6.3-54.fc32.noarch xorg-x11-font-utils-1:7.5-44.fc32.x86_64 xorg-x11-fonts-Type1-7.5-24.fc32.noarch xorg-x11-proto-devel-2019.1-3.fc32.noarch xz-devel-5.2.5-2.fc33.x86_64 zlib-devel-1.2.11-21.fc32.x86_64 Complete! Finish: build setup for rdkit-2019.03.3-9.fc33.src.rpm Start: rpmbuild rdkit-2019.03.3-9.fc33.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1594425600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ASrQLu + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rdkit-Release_2019_03_3 + /usr/bin/mkdir -p rdkit-Release_2019_03_3 + cd rdkit-Release_2019_03_3 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2019_03_3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + mv rdkit-Release_2019_03_3 python3 + pushd python3 ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch): + echo 'Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py Hunk #1 succeeded at 169 (offset 71 lines). Patch #1 (rdkit-2018.03-do_not_install_sping.patch): + echo 'Patch #1 (rdkit-2018.03-do_not_install_sping.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 274 (offset 56 lines). Hunk #2 succeeded at 282 (offset 56 lines). Patch #2 (rdkit-Release_2019_03_3-gcc10.patch): + echo 'Patch #2 (rdkit-Release_2019_03_3-gcc10.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file Code/GraphMol/catch_sgroups.cpp patching file Code/GraphMol/testSGroup.cpp + rm -rf rdkit/sping + cp -pr license.txt ReleaseNotes.md ../ + popd ~/build/BUILD/rdkit-Release_2019_03_3 + xargs sed -i '1s|^#!.*|#!/usr/bin/python3|' + find python3 -name '*.py' + find python3 -name test_list.py + xargs sed -i 's/"python"/"python3"/g' + find python3 -name test_list.py + xargs sed -i 's/'\''python'\''/'\''python3'\''/g' + sed -i.orig s/python/python3/g python3/Projects/DbCLI/TestDbCLI.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.CiUEgu + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 + cd rdkit-Release_2019_03_3 + export 'CXXFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed' + pushd python3 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B . -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python39 -D CATCH_DIR:FILEPATH=/usr/include/catch2 . -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found Catch2: /usr/include/catch2 CATCH: /usr/include/catch2 CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:273 (message): The package name passed to `find_package_handle_standard_args` (INCHI) does not match the name of the calling package (Inchi). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): Code/cmake/Modules/FindInchi.cmake:21 (find_package_handle_standard_args) CMakeLists.txt:216 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found INCHI: /usr/lib64/libinchi.so -- Found PythonInterp: /usr/bin/python3 (found version "3.9") -- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.0b4") Python Install directory /usr/lib64/python3.9/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /usr/include (found suitable version "1.73.0", minimum required is "1.56.0") found components: serialization -- Found PostgreSQL: /usr/lib64/libpq.so (found version "12.3") == Using strict rotor definition -- Found Boost: /usr/include (found suitable version "1.73.0", minimum required is "1.56.0") found components: system iostreams regex == Updating Filters.cpp from pains file == Done updating pains files -- Found PkgConfig: /usr/bin/pkg-config (found version "1.7.0") -- Checking for module 'cairo' -- Found cairo, version 1.16.0 -- Found Cairo: /usr/include/cairo postgres: /usr/include;/usr/include/pgsql/server ===================================================================== After building, check /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/pgsql_install.sh for correctness of installation paths. If everything is OK, gain administrator privileges, stop the PostgreSQL service, run /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/pgsql_install.sh to install the PostgreSQL RDKit cartridge, then start again the PostgreSQL service ===================================================================== -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 + make -j2 /usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 -B/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2019_03_3/python3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target catch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build Scanning dependencies of target inchi_support make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/rdkit/Chem/inchi.py [ 0%] Built target catch make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' Scanning dependencies of target coordgen_support make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build [ 0%] Built target inchi_support make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake --color= [ 0%] Built target coordgen_support make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend Scanning dependencies of target RDStreams make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' Scanning dependencies of target hc make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build [ 0%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDStreams_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams/streams.cpp make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/hc.c [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/hcdriver.c [ 0%] Linking C shared library ../../../../lib/libRDKithc.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2019.03.3 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2019.03.3 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 0%] Built target hc make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeneral make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/Invariant.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/types.cpp [ 1%] Linking CXX shared library ../../lib/libRDKitRDStreams.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2019.03.3 CMakeFiles/RDStreams.dir/streams.cpp.o -lboost_system -lboost_iostreams -lboost_regex -lboost_system -lboost_iostreams -lboost_regex cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2019.03.3 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 1%] Built target RDStreams [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/utils.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/RDLog.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/Dict.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/LocaleSwitcher.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/versions.cpp [ 2%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2019.03.3 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Built target RDGeneral make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= Scanning dependencies of target EigenSolvers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build Scanning dependencies of target DataStructs make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers && /usr/bin/g++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp [ 2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/BitVect.cpp [ 2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseBitVect.cpp [ 2%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Built target EigenSolvers make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= Scanning dependencies of target RDBoost make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost && /usr/bin/g++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.cpp [ 2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/ExplicitBitVect.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.cpp:15: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 2%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2019.03.3 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2019.03.3 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Built target RDBoost make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= Scanning dependencies of target testRDValue make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/testRDValue.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Utils.cpp In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/testRDValue.cpp:5: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h: In function 'bool RDKit::isSerializable(const RDKit::Dict::Pair&, const CustomPropHandlerVec&)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:353:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 353 | } | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:354:5: note: here 354 | default: | ^~~~~~~ [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/base64.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/BitOps.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteDistMat.cpp [ 3%] Linking CXX executable testRDValue cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 3%] Built target testRDValue make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= Scanning dependencies of target testDict make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/testDict.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteValueVect.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/FPBReader.cpp [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/MultiFPBReader.cpp [ 5%] Linking CXX executable testDict cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Built target testDict make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= Scanning dependencies of target rdBase make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/RDBase.cpp [ 5%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2019.03.3 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Built target DataStructs make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= Scanning dependencies of target testMatrices make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/testMatrices.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/RDBase.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 5%] Linking CXX executable testMatrices cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Built target testMatrices make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= Scanning dependencies of target Catalogs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/g++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/Catalog.cpp [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/g++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CatalogParams.cpp [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/g++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CatalogEntry.cpp [ 5%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2019.03.3 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Built target Catalogs make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= Scanning dependencies of target testQuery make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query/test.cpp [ 6%] Linking CXX executable testQuery cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testQuery.dir/test.cpp.o -o testQuery -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 6%] Built target testQuery make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= Scanning dependencies of target testMatCalc make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 6%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp [ 7%] Linking CXX executable testMatCalc cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 7%] Built target testMatCalc make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= Scanning dependencies of target rdMetricMatrixCalc make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 7%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 7%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 7%] Built target rdMetricMatrixCalc make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/DistPicker.cpp [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/MaxMinPicker.cpp [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 8%] Linking CXX shared module ../../../rdkit/rdBase.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread [ 9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2019.03.3 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKithc.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2019.03.3 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Built target SimDivPickers make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target Clustering make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/g++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/Clustering.cpp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Built target rdBase make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target InfoTheory make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory && /usr/bin/g++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/InfoBitRanker.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 9%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2019.03.3 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2019.03.3 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Built target InfoTheory make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeometryLib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.cpp [ 9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKithc.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Built target Clustering make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= Scanning dependencies of target testMultiFPB make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testMultiFPB.cpp [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Transform2D.cpp [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Transform3D.cpp [ 9%] Linking CXX executable testMultiFPB cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Built target testMultiFPB make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= Scanning dependencies of target testFPB make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testFPB.cpp [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/UniformGrid3D.cpp [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/GridUtils.cpp [ 9%] Linking CXX executable testFPB cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Built target testFPB make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target testDataStructs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 9%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp [ 10%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 10%] Built target RDGeometryLib make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target cDataStructs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DataStructs.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp: In function 'void test5DiscreteVectOps2()': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:477:19: warning: implicitly-declared 'RDKit::DiscreteValueVect& RDKit::DiscreteValueVect::operator=(const RDKit::DiscreteValueVect&)' is deprecated [-Wdeprecated-copy] 477 | vect5 = vect1 - vect2; | ^~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:22: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteValueVect.h:50:3: note: because 'RDKit::DiscreteValueVect' has user-provided 'RDKit::DiscreteValueVect::DiscreteValueVect(const RDKit::DiscreteValueVect&)' 50 | DiscreteValueVect(const DiscreteValueVect &other); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:479:19: warning: implicitly-declared 'RDKit::DiscreteValueVect& RDKit::DiscreteValueVect::operator=(const RDKit::DiscreteValueVect&)' is deprecated [-Wdeprecated-copy] 479 | vect5 = vect2 - vect1; | ^~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:22: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteValueVect.h:50:3: note: because 'RDKit::DiscreteValueVect' has user-provided 'RDKit::DiscreteValueVect::DiscreteValueVect(const RDKit::DiscreteValueVect&)' 50 | DiscreteValueVect(const DiscreteValueVect &other); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp: In function 'void test6SparseIntVect()': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:627:17: warning: implicitly-declared 'RDKit::SparseIntVect& RDKit::SparseIntVect::operator=(const RDKit::SparseIntVect&)' is deprecated [-Wdeprecated-copy] 627 | iV3 = iV1 & iV2; | ^~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect' has user-provided 'RDKit::SparseIntVect::SparseIntVect(const RDKit::SparseIntVect&) [with IndexType = int]' 38 | SparseIntVect(const SparseIntVect &other) { | ^~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:725:17: warning: implicitly-declared 'RDKit::SparseIntVect& RDKit::SparseIntVect::operator=(const RDKit::SparseIntVect&)' is deprecated [-Wdeprecated-copy] 725 | iV3 = iV1 | iV2; | ^~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect' has user-provided 'RDKit::SparseIntVect::SparseIntVect(const RDKit::SparseIntVect&) [with IndexType = int]' 38 | SparseIntVect(const SparseIntVect &other) { | ^~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:808:17: warning: implicitly-declared 'RDKit::SparseIntVect& RDKit::SparseIntVect::operator=(const RDKit::SparseIntVect&)' is deprecated [-Wdeprecated-copy] 808 | iV3 = iV1 + iV2; | ^~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect' has user-provided 'RDKit::SparseIntVect::SparseIntVect(const RDKit::SparseIntVect&) [with IndexType = int]' 38 | SparseIntVect(const SparseIntVect &other) { | ^~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:864:17: warning: implicitly-declared 'RDKit::SparseIntVect& RDKit::SparseIntVect::operator=(const RDKit::SparseIntVect&)' is deprecated [-Wdeprecated-copy] 864 | iV3 = iV1 - iV2; | ^~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect' has user-provided 'RDKit::SparseIntVect::SparseIntVect(const RDKit::SparseIntVect&) [with IndexType = int]' 38 | SparseIntVect(const SparseIntVect &other) { | ^~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DataStructs.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 12%] Linking CXX executable testDataStructs cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 12%] Built target testDataStructs make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testGrid make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 12%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/testGrid.cpp [ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/SparseIntVect.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/SparseIntVect.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 12%] Linking CXX executable testGrid cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 12%] Built target testGrid make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 12%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/testTransforms.cpp [ 13%] Linking CXX executable testTransforms cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 13%] Built target testTransforms make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/Point.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/Point.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/UniformGrid3D.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/UniformGrid3D.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/rdGeometry.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 14%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 14%] Built target rdGeometry make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 14%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/g++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/AlignPoints.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 14%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2019.03.3 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 14%] Built target Alignment make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target testSimDivPickers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 15%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/testPickers.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Linking CXX executable testSimDivPickers cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSimDivPickers.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread ../../lib/libRDKithc.so.1.2019.03.3 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 15%] Built target testSimDivPickers make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target rdSimDivPickers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/MaxMinPicker.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_FPB.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSimDivPickers.so.1.2019.03.3 ../../../lib/libRDKithc.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 16%] Built target rdSimDivPickers make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target rdInfoTheory make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_Utils.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 16%] Built target cDataStructs make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= Scanning dependencies of target cQuantize make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 16%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/cQuantize.cpp [ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitInfoTheory.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 16%] Built target cQuantize make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target ChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/g++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/FreeChemicalFeature.cpp [ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp [ 17%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target ChemicalFeatures make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Atom.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 18%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitInfoTheory.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 18%] Built target rdInfoTheory make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 18%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/g++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/testAlignment.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.cpp [ 18%] Linking CXX executable testAlignment cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 18%] Built target testAlignment make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 18%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/rdAlignment.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryBond.cpp [ 19%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Built target rdAlignment make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/g++ -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/testChemicalFeatures.cpp [ 19%] Linking CXX executable testChemicalFeatures cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Built target testChemicalFeatures [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Bond.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolOps.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FindRings.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RWMol.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PeriodicTable.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/atomic_data.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = int; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1004:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int) [with T = int; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:819:57: required from here /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1516:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1516 | if ((tmpChar < 0 || tmpChar > 127) && version > 9000) { | ~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = unsigned char; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1004:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int) [with T = unsigned char; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:821:63: required from here /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1516:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.h:19, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:12: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h: In function 'bool RDKit::isSerializable(const RDKit::Dict::Pair&, const CustomPropHandlerVec&)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:353:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 353 | } | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:354:5: note: here 354 | default: | ^~~~~~~ [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Canon.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/AtomIterators.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/BondIterators.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Aromaticity.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Kekulize.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDiscriminators.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ConjugHybrid.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/AddHs.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Matrices.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Chirality.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RingInfo.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Renumber.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/AdjustQuery.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Resonance.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StereoGroup.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/new_canon.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstanceGroup.cpp [ 23%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2019.03.3 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target GraphMol make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target MolTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build Scanning dependencies of target SubstructMatch make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/g++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/SubstructMatch.cpp [ 23%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target MolTransforms make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= Scanning dependencies of target SmilesParse make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/SubstructUtils.cpp [ 23%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target SubstructMatch make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= [ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp Scanning dependencies of target Subgraphs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 23%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 23%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target Subgraphs make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/g++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 23%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/g++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/GasteigerParams.cpp [ 23%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target PartialCharges make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= Scanning dependencies of target Trajectory make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/Trajectory.cpp [ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp [ 23%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2019.03.3 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target Trajectory make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target rdPartialCharges make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 23%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target rdPartialCharges make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp [ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target rdMolTransforms make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp [ 24%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp [ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 24%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target ShapeHelpers make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target MolCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/g++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp [ 24%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/g++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 25%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2019.03.3 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2019.03.3 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 25%] Built target MolCatalog make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 25%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/SLNParse.cpp [ 25%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 25%] Built target SmilesParse make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= Scanning dependencies of target rdqueries make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 25%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdqueries.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdqueries.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Queries.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Queries.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/SLNAttribs.cpp In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitQueries.h:21, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Queries.cpp:15: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h:949:16: required from here /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h:956:16: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=] 956 | } catch (KeyErrorException) { | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h:958:23: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=] 958 | } catch (boost::bad_any_cast) { | ^~~~~~~~~~~~ [ 25%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/sln.tab.cpp [ 26%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 26%] Built target rdqueries make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= Scanning dependencies of target rdtrajectory make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Trajectory.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Trajectory.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/lex.yysln.cpp [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdTrajectory.cpp [ 27%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2019.03.3 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2019.03.3 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 27%] Built target SLNParse make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 27%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdTrajectory.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 27%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 27%] Built target rdtrajectory make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 27%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp:12: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:314:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy] 314 | return posi->second; | ^~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)' 59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) { | ^~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter] 310 | bool permuteDeg4Nodes, bool forceRDKit) { | ~~~~~^~~~~~~~~~ [ 27%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:314:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy] 314 | return posi->second; | ^~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)' 59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) { | ^~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithAng(unsigned int, unsigned int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:710:40: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy] 710 | EmbeddedAtom refAtom = d_eatoms[toAid]; | ^ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)' 59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) { | ^~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithNoAng(unsigned int, unsigned int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:781:40: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy] 781 | EmbeddedAtom refAtom = d_eatoms[toAid]; | ^ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)' 59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) { | ^~~~~~~~ [ 28%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 28%] Built target rdChemicalFeatures make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 28%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/g++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/BFGSOpt.cpp [ 28%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/g++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/LinearSearch.cpp [ 29%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2019.03.3 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Built target Optimizer make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolSGroupCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/catch_sgroups.cpp [ 29%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/DepictUtils.cpp [ 29%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2019.03.3 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Built target Depictor make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolcpTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/cptest.cpp [ 29%] Linking CXX executable graphmolcpTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Built target graphmolcpTest make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/querytest.cpp [ 29%] Linking CXX executable graphmolqueryTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Built target graphmolqueryTest make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestCanon make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testCanon.cpp [ 30%] Linking CXX executable graphmoltestCanon cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 30%] Built target graphmoltestCanon make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= Scanning dependencies of target test-valgrind make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test-valgrind.cpp [ 31%] Linking CXX executable test-valgrind cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target test-valgrind make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolIterTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/itertest.cpp [ 31%] Linking CXX executable graphmolSGroupCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target graphmolSGroupCatch make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/memtest1.cpp [ 31%] Linking CXX executable graphmolIterTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target graphmolIterTest make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target ChemTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 31%] Linking CXX executable graphmolMemTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target graphmolMemTest1 make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smaTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smatest.cpp [ 31%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp [ 31%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target ChemTransforms make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest2 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/test2.cpp [ 31%] Linking CXX executable smaTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target smaTest1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FilterCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Filters.cpp [ 32%] Linking CXX executable smiTest2 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 32%] Built target smiTest2 make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Fingerprints.cpp [ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp [ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp [ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/AtomPairs.cpp [ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/MACCS.cpp [ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 33%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp [ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp [ 34%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 34%] Built target FilterCatalog make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs2 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 34%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/test2.cpp [ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/MorganGenerator.cpp [ 35%] Linking CXX executable testSubgraphs2 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target testSubgraphs2 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/test1.cpp [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp [ 35%] Linking CXX executable testSubgraphs1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target testSubgraphs1 make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/FingerprintUtil.cpp [ 36%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp [ 36%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp [ 36%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 37%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2019.03.3 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Built target Fingerprints make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target testPartialCharges make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/test1.cpp [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 37%] Linking CXX executable testPartialCharges cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Built target testPartialCharges make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp [ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp [ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp [ 37%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2019.03.3 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2019.03.3 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Built target FragCatalog make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdShapeHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp [ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] 56 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ~~~~~~^ [ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 38%] Built target rdShapeHelpers make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target ReducedGraphs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp [ 39%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target MolChemicalFeatures make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructLibrary make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp [ 40%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target ReducedGraphs make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target testSLNParse make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/test.cpp [ 41%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target SubstructLibrary make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target rdSLNParse make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp:35: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 41%] Linking CXX executable testSLNParse cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSLNParse.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target testSLNParse make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= Scanning dependencies of target rdchem make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdchem.cpp [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitSLNParse.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target rdSLNParse make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color= Scanning dependencies of target RDInchiLib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/g++ -DRDInchiLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/inchi.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdchem.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 41%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2019.03.3 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: -linchi ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2019.03.3 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target RDInchiLib make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= Scanning dependencies of target FileParsers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Table.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Table.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Table.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolFileParser.cpp [ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Atom.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Atom.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Bond.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupParsing.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Bond.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp [ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Mol.cpp In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp:14: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.h: In function 'std::string RDKit::SGroupWriting::BuildV2000SAPLines(int, const RDKit::SubstanceGroup&)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.h:24:25: warning: '%3d' directive output may be truncated writing between 3 and 11 bytes into a region of size 4 [-Wformat-truncation=] 24 | snprintf(output, 5, " %3d", value); | ^~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.h:24:23: note: directive argument in the range [-2147483647, 2147483647] 24 | snprintf(output, 5, " %3d", value); | ^~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/streambuf:41, from /usr/include/c++/10/bits/streambuf_iterator.h:35, from /usr/include/c++/10/iterator:66, from /usr/include/boost/iterator/iterator_traits.hpp:10, from /usr/include/boost/range/mutable_iterator.hpp:23, from /usr/include/boost/range/iterator.hpp:20, from /usr/include/boost/range/begin.hpp:24, from /usr/include/boost/algorithm/string/detail/sequence.hpp:17, from /usr/include/boost/algorithm/string/join.hpp:15, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp:11: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 13 bytes into a destination of size 5 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Mol.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolFileStereochem.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Conformer.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Conformer.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SDMolSupplier.cpp [ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/RingInfo.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SDWriter.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/RingInfo.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/EditableMol.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/EditableMol.cpp:17: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MonomerInfo.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MonomerInfo.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TDTWriter.cpp [ 45%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp:15: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TplFileParser.cpp [ 45%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolBundle.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TplFileWriter.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolBundle.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/PDBParser.cpp [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/StereoGroup.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/StereoGroup.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/PDBWriter.cpp [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SubstanceGroup.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SubstanceGroup.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/PDBSupplier.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 46%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 46%] Built target rdchem make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color= Scanning dependencies of target rdinchi make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 46%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/pyInchi.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SequenceWriters.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/pyInchi.cpp:32: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDInchiLib.so.1.2019.03.3 -linchi ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 46%] Built target rdinchi make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 47%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/testOptimizer.cpp [ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SVGParser.cpp [ 48%] Linking CXX executable testOptimizer cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 48%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/ForceField.cpp [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/AngleBend.cpp [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/BondStretch.cpp [ 48%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2019.03.3 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 48%] Built target FileParsers make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= Scanning dependencies of target rdFingerprintGenerator make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 49%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/Nonbonded.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/Inversion.cpp [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/TorsionAngle.cpp [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/DistanceConstraint.cpp [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/AngleConstraint.cpp [ 50%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 50%] Built target rdFingerprintGenerator make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testMolTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 51%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/test1.cpp [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/TorsionConstraint.cpp [ 51%] Linking CXX executable testMolTransforms cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 51%] Built target testMolTransforms make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp [ 52%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/PositionConstraint.cpp [ 52%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/Params.cpp [ 52%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/AngleBend.cpp [ 52%] Linking CXX executable testFeatures cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 52%] Built target testFeatures make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/BondStretch.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/StretchBend.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/OopBend.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/TorsionAngle.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/Nonbonded.cpp [ 53%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/DistanceConstraint.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/AngleConstraint.cpp [ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp [ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/TorsionConstraint.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 55%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 55%] Built target rdMolChemicalFeatures make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= [ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/PositionConstraint.cpp Scanning dependencies of target testMolCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/test1.cpp [ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/Params.cpp [ 56%] Linking CXX executable testMolCatalog cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolCatalog.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target testMolCatalog make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h:15, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp:5: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 56%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2019.03.3 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target ForceField make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= Scanning dependencies of target FMCS make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7, from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13, from /usr/include/boost/property_tree/json_parser.hpp:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp:16: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp: In function 'bool RDKit::checkRingMatch(const RDKit::MCSBondCompareParameters&, const RDKit::ROMol&, unsigned int, const RDKit::ROMol&, unsigned int, void*)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp:273:60: warning: unused parameter 'p' [-Wunused-parameter] 273 | static bool checkRingMatch(const MCSBondCompareParameters& p, const ROMol& mol1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp:273:76: warning: unused parameter 'mol1' [-Wunused-parameter] 273 | static bool checkRingMatch(const MCSBondCompareParameters& p, const ROMol& mol1, | ~~~~~~~~~~~~~^~~~ [ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolCatalog.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target rdMolCatalog make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= Scanning dependencies of target MMPA make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/g++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/MMPA.cpp [ 56%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Seed.cpp [ 57%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2019.03.3 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2019.03.3 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 57%] Built target MMPA make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target testReducedGraphs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 57%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/test1.cpp [ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp [ 58%] Linking CXX executable testReducedGraphs cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Built target testReducedGraphs make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target rdReducedGraphs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 58%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Built target rdReducedGraphs make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= Scanning dependencies of target substructLibraryTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp [ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 58%] Linking CXX executable substructLibraryTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Built target substructLibraryTest [ 58%] Linking CXX shared library ../../../lib/libRDKitFMCS.so make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2019.03.3 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread Scanning dependencies of target rdSubstructLibrary make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target FMCS make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolfiles make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolfiles.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.h:36, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp:32: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolfiles.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp:31: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 59%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target rdSubstructLibrary [ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesWriter.cpp [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDWriter.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesWriter.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDWriter.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTWriter.cpp [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/PDBWriter.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTWriter.cpp:13: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/PDBWriter.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 60%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Crippen.cpp [ 61%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 61%] Built target rdmolfiles make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 61%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp [ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 62%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MolSurf.cpp [ 63%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Lipinski.cpp [ 63%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MQN.cpp [ 63%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Property.cpp [ 63%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/AUTOCORR2D.cpp [ 64%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 64%] Built target ForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTestsCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/catch_tests.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/USRDescriptor.cpp [ 64%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2019.03.3 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 64%] Built target Descriptors make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= Scanning dependencies of target molBundleTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 64%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testMolBundle.cpp [ 65%] Linking CXX executable molBundleTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Built target molBundleTest make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/testSGroup.dir/DependInfo.cmake --color= Scanning dependencies of target testSGroup make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Building CXX object Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSGroup.dir/testSGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testSGroup.cpp [ 65%] Linking CXX executable testSGroup cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSGroup.dir/testSGroup.cpp.o -o testSGroup -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Built target testSGroup make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPicklerGlobalSetting make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testPicklerGlobalSettings.cpp [ 65%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestChirality make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testChirality.cpp [ 66%] Linking CXX executable graphmolTestsCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -o graphmolTestsCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Built target graphmolTestsCatch make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp [ 66%] Linking CXX executable graphmolTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Built target graphmolTest1 make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= Scanning dependencies of target resMolSupplierTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/resMolSupplierTest.cpp [ 66%] Linking CXX executable graphmoltestChirality cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Built target graphmoltestChirality make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMolOpsTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/molopstest.cpp [ 67%] Linking CXX executable resMolSupplierTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 67%] Built target resMolSupplierTest make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= Scanning dependencies of target hanoiTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/hanoitest.cpp [ 68%] Linking CXX executable hanoiTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target hanoiTest make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPickler make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testPickler.cpp [ 68%] Linking CXX executable graphmoltestPickler cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target graphmoltestPickler make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target testDepictor make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/testDepictor.cpp [ 68%] Linking CXX executable graphmolMolOpsTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target graphmolMolOpsTest make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target rdDepictor make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp [ 68%] Linking CXX executable testDepictor cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/test.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:18: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:314:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy] 314 | return posi->second; | ^~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)' 59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) { | ^~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter] 131 | void setPreferCoordGen(bool value) { | ~~~~~^~~~~ [ 68%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target rdDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target smiTestCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp [ 68%] Linking CXX executable smiTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target smiTest1 make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= Scanning dependencies of target cxsmilesTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/cxsmiles_test.cpp [ 68%] Linking CXX executable cxsmilesTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target cxsmilesTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= Scanning dependencies of target testMolWriter make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testMolWriter.cpp [ 68%] Linking CXX executable testMolWriter cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/test1.cpp [ 68%] Linking CXX executable smiTestCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target smiTestCatch make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= Scanning dependencies of target testMolSupplier make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testMolSupplier.cpp [ 68%] Linking CXX executable testMolSupplier cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitRDStreams.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= Scanning dependencies of target testExtendedStereoParsing make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp [ 68%] Linking CXX executable testExtendedStereoParsing cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testExtendedStereoParsing make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= Scanning dependencies of target testTplParser make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp: In function 'void test1()': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:43:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy] 43 | conf = m->getConformer(0); | ^ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:25, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:13: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:60:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)' 60 | Conformer(const Conformer &other); | ^~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:48:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy] 48 | conf = m->getConformer(1); | ^ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:25, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:13: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:60:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)' 60 | Conformer(const Conformer &other); | ^~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:59:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy] 59 | conf = m->getConformer(0); | ^ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:25, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:13: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:60:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)' 60 | Conformer(const Conformer &other); | ^~~~~~~~~ [ 68%] Linking CXX executable testTplParser cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= Scanning dependencies of target testMol2ToMol make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testMol2ToMol.cpp [ 68%] Linking CXX executable fileParsersTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 [ 68%] Linking CXX executable testMol2ToMol cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= Scanning dependencies of target testSequence make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testSequence.cpp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target fileParsersTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersCatchTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/catch_tests.cpp [ 69%] Linking CXX executable testSequence cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Built target testSequence make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/DependInfo.cmake --color= Scanning dependencies of target testPropertyLists make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testPropertyLists.cpp [ 69%] Linking CXX executable fileParsersCatchTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Built target fileParsersCatchTest make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target testSubstructMatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/test1.cpp [ 69%] Linking CXX executable testPropertyLists cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPropertyLists.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -o testPropertyLists -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Built target testPropertyLists make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target substructTestCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/catch_tests.cpp [ 69%] Linking CXX executable testSubstructMatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Built target testSubstructMatch make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target ChemReactions make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Reaction.cpp [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/MDLParser.cpp [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/DaylightParser.cpp [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.h:19, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp:13: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h: In function 'bool RDKit::isSerializable(const RDKit::Dict::Pair&, const CustomPropHandlerVec&)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:353:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 353 | } | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:354:5: note: here 354 | default: | ^~~~~~~ [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionWriter.cpp [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 70%] Linking CXX executable substructTestCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -o substructTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 70%] Built target substructTestCatch make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testChemTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 71%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/testChemTransforms.cpp [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp: In function 'RDKit::SparseIntVect* RDKit::DifferenceFingerprintChemReaction(const RDKit::ChemicalReaction&, const RDKit::ReactionFingerprintParams&)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:221:42: warning: implicitly-declared 'RDKit::SparseIntVect& RDKit::SparseIntVect::operator=(const RDKit::SparseIntVect&)' is deprecated [-Wdeprecated-copy] 221 | (*res) = *productFP - *reactantFP + *agentFP; | ^~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect' has user-provided 'RDKit::SparseIntVect::SparseIntVect(const RDKit::SparseIntVect&) [with IndexType = unsigned int]' 38 | SparseIntVect(const SparseIntVect &other) { | ^~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:226:28: warning: implicitly-declared 'RDKit::SparseIntVect& RDKit::SparseIntVect::operator=(const RDKit::SparseIntVect&)' is deprecated [-Wdeprecated-copy] 226 | (*res) = *productFP - *reactantFP; | ^~~~~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect' has user-provided 'RDKit::SparseIntVect::SparseIntVect(const RDKit::SparseIntVect&) [with IndexType = unsigned int]' 38 | SparseIntVect(const SparseIntVect &other) { | ^~~~~~~~~~~~~ [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionUtils.cpp [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/MoleculeParser.cpp [ 72%] Linking CXX executable testChemTransforms cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 72%] Built target testChemTransforms make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= Scanning dependencies of target filterCatalogTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 72%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionRunner.cpp [ 72%] Linking CXX executable filterCatalogTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 72%] Built target filterCatalogTest make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfiltercatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 72%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.h:36, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp:32: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp:31: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/SanitizeRxn.cpp [ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp [ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp [ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 74%] Built target rdfiltercatalog make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testFragCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/test1.cpp [ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp [ 75%] Linking CXX executable testFragCatalog cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFragCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex [ 75%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2019.03.3 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Built target testFragCatalog make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfragcatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Built target ChemReactions make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= Scanning dependencies of target testAUTOCORR2D make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h:15, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp [ 75%] Linking CXX executable testAUTOCORR2D cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Built target testAUTOCORR2D make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target testDescriptors make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/test.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 75%] Linking CXX executable testDescriptors cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Built target testDescriptors make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDescriptors make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFragCatalog.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 76%] Built target rdfragcatalog make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target fpTestCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/catch_tests.cpp In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] 85 | x = other.x; | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] 86 | y = other.y; | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] 87 | z = other.z; | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] 85 | x = other.x; | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] 86 | y = other.y; | ~~~~~~^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] 87 | z = other.z; | ~~~~~~^ [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target rdMolDescriptors make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprintGenerators make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp [ 77%] Linking CXX executable fpTestCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target fpTestCatch make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprints make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/test1.cpp [ 77%] Linking CXX executable testFingerprintGenerators cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target testFingerprintGenerators make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceFieldHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target rdForceFieldHelpers make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target MolDraw2D make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 77%] Linking CXX executable testFingerprints cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target testFingerprints make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target testFMCS make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/testFMCS_Unit.cpp [ 77%] Linking CXX executable testFMCS cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target testFMCS make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target rdFMCS make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp [ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp [ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 78%] Built target rdFMCS make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= Scanning dependencies of target FMCStest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 78%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test/testFMCS.cpp [ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7, from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13, from /usr/include/boost/property_tree/json_parser.hpp:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp:22: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 78%] Linking CXX executable FMCStest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 78%] Built target FMCStest make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= Scanning dependencies of target MolHash make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 78%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/g++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/MolHash.cpp [ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp [ 79%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/g++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/HashToString.cpp [ 79%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization -lcairo cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Built target MolDraw2D make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target testMMPA make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/MMPA_UnitTest.cpp [ 79%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2019.03.3 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Built target MolHash make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target rdMMPA make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 79%] Linking CXX executable testMMPA cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMMPA.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Built target testMMPA make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target StructChecker make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructChecker.cpp [ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMMPA.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Built target rdMMPA make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/trajectoryTest.cpp [ 80%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7, from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13, from /usr/include/boost/property_tree/json_parser.hpp:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:16: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX executable trajectoryTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 81%] Built target trajectoryTest make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target RGroupDecomposition make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 81%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp: In member function 'void RDKit::RGroupDecompData::relabelCore(RDKit::RWMol&, std::map&, const std::set&, const std::set&, std::map >)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:675:41: warning: unused parameter 'userLabels' [-Wunused-parameter] 675 | const std::set &userLabels, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructureFlags.cpp [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Utilites.cpp [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Pattern.cpp [ 81%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 81%] Built target RGroupDecomposition make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolops make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 81%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolops.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolops.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Stereo.cpp [ 81%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolOps.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolOps.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/ReCharge.cpp [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Tautomer.cpp [ 82%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2019.03.3 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2019.03.3 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 82%] Built target StructChecker make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target MolStandardize make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 82%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 82%] Built target rdmolops make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color= Scanning dependencies of target rdkit make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 82%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/g++ -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp [ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Metal.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7, from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13, from /usr/include/boost/property_tree/json_parser.hpp:16, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:60: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1007:71: warning: unused parameter 'sza' [-Wunused-parameter] 1007 | extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza, | ~~~~~~~~~~~~~^~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1008:71: warning: unused parameter 'szb' [-Wunused-parameter] 1008 | const char *b, unsigned int szb) { | ~~~~~~~~~~~~~^~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1120:71: warning: unused parameter 'sza' [-Wunused-parameter] 1120 | extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza, | ~~~~~~~~~~~~~^~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1158:71: warning: unused parameter 'sza' [-Wunused-parameter] 1158 | extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza, | ~~~~~~~~~~~~~^~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1459:38: warning: unused parameter 'data' [-Wunused-parameter] 1459 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1459:49: warning: unused parameter 'isQuery' [-Wunused-parameter] 1459 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1460:44: warning: unused parameter 'bitFlags' [-Wunused-parameter] 1460 | unsigned int bitFlags) { | ~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1899:21: warning: unused variable 'fp' [-Wunused-variable] 1899 | FingerprintType fp = static_cast(fpType); | ^~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1921:21: warning: unused variable 'fp' [-Wunused-variable] 1921 | FingerprintType fp = static_cast(fpType); | ^~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1966:12: warning: unused variable 'nmols' [-Wunused-variable] 1966 | int len, nmols = 0; | ^~~~~ [ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Normalize.cpp [ 82%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_op.c [ 82%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/cache.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c: In function 'createCache': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 312 | methodsOrig = ctx->methods; | ^ [ 82%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/guc.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/guc.c [ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/low_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration] 410 | fcinfo->flinfo->fn_extra = searchSfpCache( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion] 410 | fcinfo->flinfo->fn_extra = searchSfpCache( | ^ [ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/mol_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:34: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition': /usr/include/pgsql/server/fmgr.h:268:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] 268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value) | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:393:18: note: in expansion of macro 'PG_GETARG_DATUM' 393 | CROMol mol = PG_GETARG_DATUM(1); | ^~~~~~~~~~~~~~~ /usr/include/pgsql/server/fmgr.h:268:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] 268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value) | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:421:18: note: in expansion of macro 'PG_GETARG_DATUM' 421 | CROMol mol = PG_GETARG_DATUM(1); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /usr/include/pgsql/server/fmgr.h:268:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] 268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value) | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:489:18: note: in expansion of macro 'PG_GETARG_DATUM' 489 | CROMol mol = PG_GETARG_DATUM(1); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:33: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:496:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 496 | PG_RETURN_INT32((int32)lst); | ^ /usr/include/pgsql/server/postgres.h:479:36: note: in definition of macro 'Int32GetDatum' 479 | #define Int32GetDatum(X) ((Datum) (X)) | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:496:5: note: in expansion of macro 'PG_RETURN_INT32' 496 | PG_RETURN_INT32((int32)lst); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:34: /usr/include/pgsql/server/fmgr.h:268:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] 268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value) | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:500:18: note: in expansion of macro 'PG_GETARG_DATUM' 500 | CROMol mol = PG_GETARG_DATUM(1); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:373:1: warning: control reaches end of non-void function [-Wreturn-type] 373 | } | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:508:1: warning: control reaches end of non-void function [-Wreturn-type] 508 | } | ^ [ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration] 275 | return (int) floor(10000*soergeldistsign(a, b)); | ^~~~~ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor' /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:42:1: note: include '' or provide a declaration of 'floor' 41 | #include "bitstring.h" +++ |+#include 42 | /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable] 262 | double d; | ^ [ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_gist.c [ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_gin.c [ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bitstring.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable] 72 | int i; | ^ /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable] 106 | int i; | ^ [ 83%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Validate.cpp [ 84%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_io.c [ 84%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rxn_op.c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment] 164 | // /* keep compiler quiet - no extra ; */ \ | ^ [ 84%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/sfp_op.c [ 84%] Linking CXX shared library librdkit.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/sql cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/data cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/expected cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o -L/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2019.03.3 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 84%] Built target rdkit make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color= Scanning dependencies of target testInchi make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 84%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/test.cpp [ 84%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Charge.cpp [ 84%] Linking CXX executable testInchi cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2019.03.3 -linchi ../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 84%] Built target testInchi make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceField make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 84%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/testUFFForceField.cpp [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Tautomer.cpp [ 85%] Linking CXX executable testUFFForceField cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 85%] Built target testUFFForceField make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 85%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/DistGeomUtils.cpp [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp [ 85%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/TriangleSmooth.cpp [ 85%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/DistViolationContrib.cpp [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp [ 86%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/ChiralViolationContrib.cpp [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp [ 86%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2019.03.3 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 86%] Built target DistGeometry make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 86%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/g++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/AlignMolecules.cpp [ 86%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/g++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 87%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2019.03.3 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 87%] Built target MolAlign make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 87%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/ForceField.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/ForceField.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp [ 87%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 87%] Built target rdForceField make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeom make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 87%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/testDistGeom.cpp [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp [ 87%] Linking CXX executable testDistGeom cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 87%] Built target testDistGeom make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeom make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 87%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap && /usr/bin/g++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/DistGeom.cpp [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/DistGeom.cpp:12: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 88%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target DistGeom make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= Scanning dependencies of target testReaction make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/testReaction.cpp [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp [ 89%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 89%] Built target MolStandardize make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testReactionFingerprints make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp [ 89%] Linking CXX executable testReactionFingerprints cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 89%] Built target testReactionFingerprints make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= Scanning dependencies of target testEnumeration make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp [ 90%] Linking CXX executable testEnumeration cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 90%] Built target testEnumeration make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target rxnTestCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/catch_tests.cpp [ 91%] Linking CXX executable testReaction cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 91%] Built target testReaction make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemReactions make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 91%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp:31: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp [ 92%] Linking CXX executable rxnTestCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 92%] Built target rxnTestCatch make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolAlign make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 92%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/props.hpp:34, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:33: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:14: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target rdMolAlign make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testShapeHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp [ 93%] Linking CXX executable testShapeHelpers cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target testShapeHelpers make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DRxnTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/rxn_test1.cpp [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target rdChemReactions make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DTestCatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/catch_tests.cpp [ 93%] Linking CXX executable moldraw2DRxnTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lcairo make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target moldraw2DRxnTest1 make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/test1.cpp [ 94%] Linking CXX executable moldraw2DTest1 cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lcairo make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Built target moldraw2DTest1 make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDraw2D make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp:11: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Built target rdMolDraw2D make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target testMolHash make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/testMolHash.cpp [ 94%] Linking CXX executable moldraw2DTestCatch cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lcairo make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Built target moldraw2DTestCatch make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolHash make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp [ 94%] Linking CXX executable testMolHash cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Built target testMolHash make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target testStructChecker make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/testStructChecker.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target rdMolHash make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target rdStructChecker make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp:32: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 95%] Linking CXX executable testStructChecker cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitStructChecker.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target testStructChecker make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= Scanning dependencies of target testRGroupDecomp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp: In function 'void testSDFGRoupMultiCoreNoneShouldMatch()': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:838:13: warning: unused variable 'addedIndex' [-Wunused-variable] 838 | int addedIndex = decomp.add(*mol); | ^~~~~~~~~~ [ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitStructChecker.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target rdStructChecker make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target rdRGroupDecomposition make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp [ 95%] Linking CXX executable testRGroupDecomp cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target testRGroupDecomp make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/test1.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:32: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 95%] Linking CXX executable molStandardizeTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target molStandardizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molNormalizeTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testNormalize.cpp [ 96%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 ../../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Built target rdRGroupDecomposition make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= Scanning dependencies of target molValidateTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testValidate.cpp [ 96%] Linking CXX executable molNormalizeTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Built target molNormalizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molChargeTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testCharge.cpp [ 96%] Linking CXX executable molValidateTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Built target molValidateTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= Scanning dependencies of target molFragmentTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testFragment.cpp [ 96%] Linking CXX executable molChargeTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Built target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= Scanning dependencies of target molTautomerTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp [ 97%] Linking CXX executable molFragmentTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 97%] Built target molFragmentTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeCatchTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/catch_tests.cpp [ 98%] Linking CXX executable molTautomerTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Built target molTautomerTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeSmallTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/test2.cpp [ 98%] Linking CXX executable molStandardizeSmallTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Built target molStandardizeSmallTest make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolStandardize make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Validate.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Validate.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable molStandardizeCatchTest cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -o molStandardizeCatchTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Built target molStandardizeCatchTest make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeomHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Charge.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Charge.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Built target DistGeomHelpers make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testMMFFForceField make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/testMMFFForceField.cpp [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Metal.cpp [100%] Linking CXX executable testMMFFForceField cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target testMMFFForceField make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testMMFFForceFieldHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Metal.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target rdMolStandardize make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceFieldHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp [100%] Linking CXX executable testMMFFForceFieldHelpers cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testCrystalForceField make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp [100%] Linking CXX executable testCrystalForceField cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target testCrystalForceField make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeomHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp [100%] Linking CXX executable testUFFForceFieldHelpers cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target rdDistGeom make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3, from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target rdDistGeom make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target testMolAlign make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/testMolAlign.cpp [100%] Linking CXX executable testDistGeomHelpers cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target testDistGeomHelpers [100%] Linking CXX executable testMolAlign cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target testMolAlign make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles 0 + pushd Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 + chrpath -d librdkit.so + popd ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 ~/build/BUILD/rdkit-Release_2019_03_3 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.KJZAau + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 ++ dirname /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 + cd rdkit-Release_2019_03_3 ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 + pushd python3 + make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 /usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 -B/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2019_03_3/python3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 2%] Built target RDGeneral make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 4%] Built target DataStructs make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 5%] Built target RDGeometryLib make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 10%] Built target GraphMol make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 10%] Built target EigenSolvers make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 10%] Built target MolTransforms make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 10%] Built target SubstructMatch make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 10%] Built target Depictor make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 11%] Built target SmilesParse make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 11%] Built target RDInchiLib make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 15%] Built target FileParsers make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 15%] Built target Subgraphs make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 15%] Built target PartialCharges make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target Descriptors make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target testInchi make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/rdkit/Chem/inchi.py make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target inchi_support make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target RDBoost make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target rdinchi make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target coordgen_support make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 17%] Built target testRDValue make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 18%] Built target testDict make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Built target rdBase make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/RDStreams/CMakeFiles/RDStreams.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Built target RDStreams make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Built target testMultiFPB make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 19%] Built target testFPB make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 20%] Built target testDataStructs make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 22%] Built target cDataStructs make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 22%] Built target testGrid make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 23%] Built target testTransforms make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target rdGeometry make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target testMatrices make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target testAlignment make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target rdAlignment make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 24%] Built target Trajectory make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 25%] Built target Optimizer make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 26%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 29%] Built target ForceField make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 30%] Built target ForceFieldHelpers make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 30%] Built target testUFFForceField make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target DistGeometry make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target DistGeomHelpers make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 31%] Built target MolAlign make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 32%] Built target testMMFFForceField make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 32%] Built target rdForceField make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 32%] Built target testDistGeom make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 33%] Built target DistGeom make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 33%] Built target Catalogs make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 33%] Built target graphmolSGroupCatch make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 34%] Built target graphmolTestsCatch make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target molBundleTest make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/testSGroup.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/testSGroup.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target testSGroup make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target graphmoltestChirality make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target graphmolcpTest make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target graphmolqueryTest make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target graphmolTest1 make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 35%] Built target resMolSupplierTest make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 36%] Built target graphmoltestCanon make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 37%] Built target graphmolMolOpsTest make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 38%] Built target hanoiTest make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target test-valgrind make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target graphmoltestPickler make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target graphmolIterTest make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target graphmolMemTest1 make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target ChemTransforms make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target testDepictor make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target rdDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target smaTest1 make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target smiTest1 make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target smiTestCatch make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 39%] Built target cxsmilesTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target smiTest2 make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target fileParsersTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target testMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target testExtendedStereoParsing make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 40%] Built target testSequence make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target fileParsersCatchTest make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target testPropertyLists make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target testSubstructMatch make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 41%] Built target substructTestCatch make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 42%] Built target FilterCatalog make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 44%] Built target Fingerprints make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 47%] Built target ChemReactions make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 48%] Built target testReaction make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 48%] Built target testReactionFingerprints make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 49%] Built target testEnumeration make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 50%] Built target rxnTestCatch make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 50%] Built target rdChemReactions make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 51%] Built target testChemTransforms make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 52%] Built target testSubgraphs2 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 52%] Built target testSubgraphs1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 52%] Built target filterCatalogTest make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 53%] Built target rdfiltercatalog make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 54%] Built target FragCatalog make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 55%] Built target testFragCatalog make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target rdfragcatalog make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target testAUTOCORR2D make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target testDescriptors make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 56%] Built target rdMolDescriptors make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 57%] Built target fpTestCatch make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 57%] Built target testFingerprintGenerators make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 57%] Built target testFingerprints make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Built target rdFingerprintGenerator make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Built target testPartialCharges make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 58%] Built target rdPartialCharges make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target testMolTransforms make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target rdMolTransforms make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target testCrystalForceField make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target rdForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target testDistGeomHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target rdDistGeom make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 59%] Built target testMolAlign make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 60%] Built target rdMolAlign make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 60%] Built target MolChemicalFeatures make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 61%] Built target testFeatures make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 62%] Built target rdMolChemicalFeatures make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 62%] Built target ShapeHelpers make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 62%] Built target testShapeHelpers make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 63%] Built target rdShapeHelpers make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 64%] Built target MolCatalog make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Built target testMolCatalog make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 65%] Built target rdMolCatalog make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Built target MolDraw2D make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Built target moldraw2DRxnTest1 make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 66%] Built target moldraw2DTestCatch make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 67%] Built target moldraw2DTest1 make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 67%] Built target rdMolDraw2D make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target FMCS make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target testFMCS make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target rdFMCS make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 68%] Built target FMCStest make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Built target MolHash make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 69%] Built target testMolHash make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 70%] Built target rdMolHash make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 71%] Built target MMPA make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 71%] Built target testMMPA make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 71%] Built target rdMMPA make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 73%] Built target StructChecker make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 73%] Built target testStructChecker make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 73%] Built target rdStructChecker make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 74%] Built target ReducedGraphs make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 74%] Built target testReducedGraphs make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 74%] Built target rdReducedGraphs make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 75%] Built target trajectoryTest make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 76%] Built target SubstructLibrary make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 76%] Built target substructLibraryTest make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target rdSubstructLibrary make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target RGroupDecomposition make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 77%] Built target testRGroupDecomp make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 78%] Built target rdRGroupDecomposition make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 79%] Built target SLNParse make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 80%] Built target testSLNParse make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 80%] Built target rdSLNParse make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 82%] Built target rdchem make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 82%] Built target rdmolops make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 83%] Built target rdqueries make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 85%] Built target rdmolfiles make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 85%] Built target rdtrajectory make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target MolStandardize make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target molStandardizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target molNormalizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target molValidateTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 88%] Built target molFragmentTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 89%] Built target molTautomerTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 90%] Built target molStandardizeCatchTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 90%] Built target molStandardizeSmallTest make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 91%] Built target rdMolStandardize make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 92%] Built target testQuery make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target testMatCalc make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target rdMetricMatrixCalc make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 93%] Built target hc make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 94%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target testSimDivPickers make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target rdSimDivPickers make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target Clustering make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 95%] Built target InfoTheory make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Built target rdInfoTheory make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 96%] Built target cQuantize make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 97%] Built target ChemicalFeatures make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 97%] Built target testChemicalFeatures make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [ 98%] Built target rdChemicalFeatures make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' [100%] Built target rdkit make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/cmake/rdkit/rdkit-targets.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/cmake/rdkit/rdkit-targets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/cmake/rdkit/rdkit-config.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/cmake/rdkit/rdkit-config-version.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/CTestTestfile.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/cmake_install.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDPaths.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDConfig.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDLogger.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDRandom.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/TestRunner.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/_py2_pickle.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/six.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/cactvs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/chemdraw.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/chemutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/comhack.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/fileutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/listutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/spiral.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/test3.gif -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/test2.gif -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/test1.gif -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/retest.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/12h.gif -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Filter.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Node.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Output.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Supply.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Transform.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/AnalyzeComposite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/BuildComposite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/CompositeRun.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/EnrichPlot.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/GrowComposite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/MatOps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/ScreenComposite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/files.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Scoring -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Scoring/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/SLT -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/SLT/Risk.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/SLT/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/ActFuncs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/CrossValidate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/NetNode.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/Network.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/Trainers.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Neural/architecture.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/NaiveBayes -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/NaiveBayes/ClassificationModel.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/NaiveBayes/CrossValidate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/NaiveBayes/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/ModelPackage -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/ModelPackage/PackageUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/ModelPackage/Packager.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/ModelPackage/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/MLUtils -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/MLUtils/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN/CrossValidate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN/DistFunctions.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN/KNNClassificationModel.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN/KNNModel.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN/KNNRegressionModel.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/KNN/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Descriptors -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Descriptors/Parser.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/BuildQuantTree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/BuildSigTree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/CrossValidate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/DecTree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/Forest.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/ID3.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/PruneTree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/QuantTree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/SigTree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/Tree.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/TreeUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/TreeVis.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/DecTree/randomtest.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/DataUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/FindQuantBounds.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/MLData.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/Quantize.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/SplitData.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/Stats.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/Transforms.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Composite -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Composite/AdjustComposite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Composite/BayesComposite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Composite/Composite.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Composite/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Butina.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Resemblance.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/DbConnection.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/DbInfo.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/DbModule.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/DbReport.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/DbResultSet.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/DbUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/StorageUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Dbase/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/BitEnsemble.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/BitEnsembleDb.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/BitUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/HierarchyVis.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/LazySignature.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/TopNContainer.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/VectCollection.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/inchi.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdinchi.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AllChem.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/BRICS.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/BuildFragmentCatalog.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemicalFeatures.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemicalForceFields.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Crippen.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/DSViewer.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Descriptors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Descriptors3D.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EnumerateHeterocycles.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EnumerateStereoisomers.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FastSDMolSupplier.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatFinderCLI.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FilterCatalog.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FragmentCatalog.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FragmentMatcher.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fragments.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FunctionalGroups.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/GraphDescriptors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Graphs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Lipinski.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MACCSkeys.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MCS.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolCatalog.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolSurf.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/PandasTools.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/PropertyMol.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/PyMol.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/QED.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Randomize.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Recap.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ReducedGraphs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/SATIS.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/SaltRemover.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ShowMols.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/TemplateAlign.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/TorsionFingerprints.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Suppliers -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Suppliers/MolSupplier.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Suppliers/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape/BuilderUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeAligner.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeObjects.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Subshape/testCombined.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/SimpleEnum -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/SimpleEnum/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Scaffolds -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Scaffolds/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm3D -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm3D/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/Generate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/Matcher.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/SigFactory.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/Utils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Pharm2D/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/charge.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/errors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/fragment.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/metal.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/normalize.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/resonance.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/standardize.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/tautomer.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/utils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/validate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/validations.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolKey -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolKey/InchiInfo.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolKey/MolKey.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolKey/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolDb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolDb/Loader.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolDb/Loader_orig.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolDb/Loader_sa.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolDb/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fraggle -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fraggle/FraggleSim.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fraggle/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Fingerprints/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Features -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Features/ShowFeats.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Features/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatMaps -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapParser.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMaps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/FeatMaps/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EState -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EState/AtomTypes.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EState/EState.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EState/EState_VSA.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EState/Fingerprinter.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/EState/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/IPythonConsole.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/MolDrawing.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/SimilarityMaps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/aggCanvas.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/cairoCanvas.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/canvasbase.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/mplCanvas.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/qtCanvas.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/spingCanvas.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/FreeSans.ttf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils/BulkTester.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils/SDFToCSV.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/ChemUtils/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AtomPairs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AtomPairs/Pairs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AtomPairs/Sheridan.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AtomPairs/Torsions.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AtomPairs/Utils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/AtomPairs/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Avalon -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Avalon/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/struchk -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/struchk/checkfgs.trn -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/struchk/checkfgs.opt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/struchk/checkfgs.chk -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/rddata.sql -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib/tests -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Salts.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/RDTests.sqlt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/RDData.sqlt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains/wehi_pains.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains/test_data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains/test_data/run_tests.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains/test_data/wehi_mols.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains/test_data/test_set3.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Pains/README.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/NCI -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/NCI/first_5k.tpsa.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/NCI/first_5K.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/NCI/first_200.tpsa.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/NCI/first_200.props.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/MolStandardize -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/MolStandardize/tautomerTransforms.in -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/MolStandardize/normalizations.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/MolStandardize/fragmentPatterns.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/MolStandardize/acid_base_pairs2.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/MolStandardize/acid_base_pairs.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/FunctionalGroups.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/FragmentDescriptors.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/DTDs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/DTDs/validate.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/DTDs/RD_Model.dtd -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/DTDs/RD_Dataset.dtd -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/Crippen.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Data/BaseFeatures.fdef -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/RD.css -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/compounds.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/wiki -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/logo_plain.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/logo.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/logo.lrg.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/logo.inkscape.svg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Images/logo.ai -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/SGroups.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/EnhancedStereo.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/CodingStandards.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/Chem -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/conf.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/terminology_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/introduction_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/index.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/Installation_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/conf.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.comhack.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw_qax.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.six.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.rdBase.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.demo.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.ScreenComposite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.NetNode.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.CrossValidate.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.ActFuncs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.CrossValidate.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.ClassificationModel.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.Packager.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.PackageUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNRegressionModel.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNModel.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNClassificationModel.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.DistFunctions.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.CrossValidate.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.GrowComposite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.EnrichPlot.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.randomtest.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeVis.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.Tree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.SigTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.QuantTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.PruneTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.ID3.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.Forest.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.DecTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.CrossValidate.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildSigTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildQuantTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.CompositeRun.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.Composite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.BayesComposite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.AdjustComposite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.BuildComposite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ML.AnalyzeComposite.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rdGeometry.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbReport.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.HierarchyVis.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdStructChecker.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.testCombined.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.ScaffoldTree.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.LazyGenerator.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MCS.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.qtCanvas.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.mplCanvas.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.canvasbase.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.cairoCanvas.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.aggCanvas.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.DSViewer.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/source/modules.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/index.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/similarity_map_rf.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_9.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_8.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_7.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_6.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_5.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_4.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_3.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_2.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_12.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_11.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_10.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_10.jpg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_1.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/picture_0.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/indole1.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/cdk2_mol2.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/exts -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/exts/extapi.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/solubility.train.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/solubility.test.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/invalid.mol -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/input.mol -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/chiral.mol -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/cdk2.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/bzr.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/bzr.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/AmideBond.rxn -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/api-docs.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/RDKit_Book.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/Overview.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/Install.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/GettingStartedInC++.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/Cookbook.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/Cartridge.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example9.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example8.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example7.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example6.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example5.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example4.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example3.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example2.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example16.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example15.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example14.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example13.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example12.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example11.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example10.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/example1.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/ForceField -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/pzc -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/pzc/p_con.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/pzc/readme.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/pzc/p_con.html -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/test_list.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/cansmirk.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/indexing.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/mol_transform.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/rfrag.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/test_rfrag.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/simple.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/mmpa/README.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/atomcontrib.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/fraggle.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/readme.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/data/query.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score/data -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/SA_Score/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/RxnRoleAssignment -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/RxnRoleAssignment/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/RxnRoleAssignment/utils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/RxnRoleAssignment/README.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/pbf.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/testData -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/testData/egfr.out -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/demo.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/PBFRDKit.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/PBFRDKit.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/PBF/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/NP_Score -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/NP_Score/npscorer.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/NP_Score/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/MolVS -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/MolVS/molvs_cli.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/M_Kossner -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/M_Kossner/Frames.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/M_Kossner/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF/AddLabels.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF/ClusterFps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF/CreateFps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF/DistancePlot.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF/DistancePredict.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/LEF/README.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/IFG -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/IFG/ifg.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/IFG/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Glare -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Glare/glare.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Glare/README.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/fastcluster.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/testdata -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/testdata/converted.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/fp.tsv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/clustered.tsv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/centroid.tsv -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/cdk2.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/Fastcluster/README.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/test_list.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/Wrap/test_list.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ChiralPairs -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ChiralPairs/ChiralDescriptors.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/ChiralPairs/README.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/AtomAtomSimilarity -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/CTestTestfile.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/cmake_install.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py.orig -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/CreateDb.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/SearchDb.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/testData/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Scripts -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Scripts/FeatFinderCLI.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Scripts/PythonFormat.py -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Scripts/test.sh -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Scripts/create_deb_packages.sh -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/Scripts/README.md -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/README -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/RDKit/license.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDInchiLib.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDInchiLib.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/inchi.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdinchi.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdinchi.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeneral.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeneral.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeneral.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/Exceptions.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/BadFileException.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/Dict.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/FileParseException.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/Invariant.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDAny.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDValue.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDLog.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDProps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDThreads.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/StreamOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/types.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/utils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/versions.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/RDConfig.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/Ranking.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/export.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/test.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDBoost.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDBoost.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDBoost.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDBoost.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDBoost/Wrap.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDBoost/python.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDBoost/boost_numpy.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/RDBoost/python_streambuf.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDataStructs.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDataStructs.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/base64.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/BitOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/BitVect.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/BitVects.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/DatastructsException.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/DatastructsStreamOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/FPBReader.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeometryLib.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/Grid3D.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/GridUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/point.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/Transform2D.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/Transform3D.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/Transform.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Geometry/Utils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/Matrix.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/SymmMatrix.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/Vector.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitAlignment.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitAlignment.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitEigenSolvers.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitEigenSolvers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitOptimizer.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitOptimizer.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitOptimizer.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitOptimizer.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceField.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceField.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceField.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceField.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/Contrib.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/ForceField.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/Params.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeometry.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeometry.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitCatalogs.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitCatalogs.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Catalogs/Catalog.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitGraphMol.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitGraphMol.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitGraphMol.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitGraphMol.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Atom.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/atomic_data.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Bond.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/BondIterators.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Canon.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Chirality.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Conformer.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/details.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/GraphMol.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolPickler.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/QueryBond.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/QueryOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Resonance.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/RingInfo.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Rings.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ROMol.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/RWMol.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SanitException.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SubstanceGroup.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StereoGroup.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/new_canon.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolBundle.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDepictor.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDepictor.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSmilesParse.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSmilesParse.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFileParsers.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFileParsers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructMatch.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructMatch.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemReactions.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemReactions.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemTransforms.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemTransforms.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubgraphs.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubgraphs.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFilterCatalog.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFilterCatalog.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFragCatalog.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFragCatalog.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDescriptors.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDescriptors.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFingerprints.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFingerprints.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFingerprints.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFingerprints.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitPartialCharges.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitPartialCharges.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolTransforms.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolTransforms.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceFieldHelpers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeomHelpers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolAlign.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolAlign.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolAlign.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolAlign.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitShapeHelpers.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitShapeHelpers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolCatalog.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolCatalog.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolDraw2D.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolDraw2D.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFMCS.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFMCS.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolHash.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolHash.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolHash.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolHash.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMMPA.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMMPA.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMMPA.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMMPA.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitStructChecker.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitStructChecker.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitStructChecker.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitStructChecker.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitReducedGraphs.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitReducedGraphs.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitTrajectory.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitTrajectory.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitTrajectory.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitTrajectory.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructLibrary.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRGroupDecomposition.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSLNParse.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSLNParse.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSLNParse.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSLNParse.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolStandardize.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolStandardize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/AndQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/LessQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/OrQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/Query.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/QueryObjects.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/RangeQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/SetQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Query/XOrQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/Features/Feature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSimDivPickers.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSimDivPickers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKithc.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKithc.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKithc.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitInfoTheory.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitInfoTheory.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3 -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3" to "" -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "" -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDPaths.py + pushd Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 + install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/pgsql/rdkit.so + install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/pgsql/extension/rdkit.control + install -D rdkit--3.7.sql /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/pgsql/extension/rdkit--3.7.sql + popd ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3 ~/build/BUILD/rdkit-Release_2019_03_3 + popd + rm -r /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64//usr/share/RDKit + FMCS=/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs + sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py + touch -r /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.new + mv /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py + rm /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2019.03.3-9.fc33 --unique-debug-suffix -2019.03.3-9.fc33.x86_64 --unique-debug-src-base rdkit-2019.03.3-9.fc33.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2019_03_3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFingerprints.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFingerprints.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceField.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceField.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitGraphMol.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitGraphMol.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMMPA.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMMPA.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolAlign.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolAlign.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolHash.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolHash.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitOptimizer.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitOptimizer.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDBoost.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDBoost.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeneral.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeneral.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSLNParse.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSLNParse.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitStructChecker.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitStructChecker.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitTrajectory.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKitTrajectory.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKithc.so.1.2019.03.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/pgsql/rdkit.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/libRDKithc.so.1.2019.03.3 extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/pgsql/rdkit.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdinchi.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdinchi.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so original debug info size: 591264kB, size after compression: 461764kB /usr/lib/rpm/sepdebugcrcfix: Updated 90 CRC32s, 0 CRC32s did match. 13485 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib/debug/usr/lib64/python3.9 using /usr/bin/python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/lib64/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/share/pgsql/extension/rdkit--3.7.sql is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/pgsql/extension/rdkit.control is executable but has no shebang, removing executable bit Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6YCG7v + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2019_03_3 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rdkit-2019.03.3-9.fc33.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.BBlvtt + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2019_03_3 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/doc/rdkit + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/doc/rdkit + cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/doc/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.EpJsQv + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2019_03_3 + LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/licenses/rdkit + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/licenses/rdkit + cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/licenses/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2019.03.3-9.fc33 rdkit(x86-64) = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_iostreams.so.1.73.0()(64bit) libboost_python39.so.1.73.0()(64bit) libboost_serialization.so.1.73.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.9.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: rdkit-devel-2019.03.3-9.fc33.x86_64 Provides: cmake(rdkit) = 1.2019.03.3 rdkit-devel = 2019.03.3-9.fc33 rdkit-devel(x86-64) = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) Processing files: rdkit-doc-2019.03.3-9.fc33.noarch Processing files: python3-rdkit-2019.03.3-9.fc33.x86_64 Provides: python-rdkit = 2019.03.3-9.fc33 python3-rdkit = 2019.03.3-9.fc33 python3-rdkit(x86-64) = 2019.03.3-9.fc33 python3.9-rdkit = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python39.so.1.73.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.9.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.9 rtld(GNU_HASH) Obsoletes: python-rdkit < 2019.03.3-9.fc33 Processing files: rdkit-postgresql-2019.03.3-9.fc33.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.CJRebx + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2019_03_3 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/doc/rdkit-postgresql + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/doc/rdkit-postgresql + cp -pr python3/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64/usr/share/doc/rdkit-postgresql + RPM_EC=0 ++ jobs -p + exit 0 Provides: librdkit.so()(64bit) rdkit-postgresql = 2019.03.3-9.fc33 rdkit-postgresql(x86-64) = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: rdkit-debugsource-2019.03.3-9.fc33.x86_64 Provides: rdkit-debugsource = 2019.03.3-9.fc33 rdkit-debugsource(x86-64) = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rdkit-debuginfo-2019.03.3-9.fc33.x86_64 Provides: debuginfo(build-id) = 0c691e04b2ef74098ef35d920b3461e8ee2ec906 debuginfo(build-id) = 1774a3f408f70e55c44516974b1fadd49b75612d debuginfo(build-id) = 1877b34d5887af355293144364ac41e28227e7a1 debuginfo(build-id) = 1be3022d73eef0eff388a5bf636bac78650d2c6e debuginfo(build-id) = 206d66dfe4ebebb60132303d88c645edcb085f6a debuginfo(build-id) = 261750934e7cb38cc7b0672389f58b1f5032086a debuginfo(build-id) = 27a7b079991ea7252c1730ce77fb2a7b17026c53 debuginfo(build-id) = 30300799b07190dc4a4ba9d0d34fffd207f58d80 debuginfo(build-id) = 319de30fe71df3c47741a663b4f6fcd078b6af77 debuginfo(build-id) = 34e5a80657edf1bfc7990d798ca5540c675582f0 debuginfo(build-id) = 3cba5a73dfa14ba4d7a1c04176d124c0167056e8 debuginfo(build-id) = 4074208fb357290cc5273da946b52ec5f559c0a2 debuginfo(build-id) = 4075e3c6601916dd1de0880818a36ee0e1ea4da3 debuginfo(build-id) = 509ec449593b85a9bfadedb48725f8646fc7c30c debuginfo(build-id) = 55dcd6c37271be7692909636583d83a520e4b341 debuginfo(build-id) = 6273999cdcbf26258ab6ade7dc4d495cf366826e debuginfo(build-id) = 640b083fb22c25a5e2bed9bc32625fae71026c5f debuginfo(build-id) = 69c1d4d777297b7f04933877467f58f77a3d4a7c debuginfo(build-id) = 6f5704bf2a97616125a05e45711befbf9f4809ea debuginfo(build-id) = 764c198c874ba246e8dc5f5865eadf39ed0a31bb debuginfo(build-id) = 7703bb1eb67f89be76f04436cc145b93aaa22c50 debuginfo(build-id) = 7793ca352a4ff202ca3b83066605d18f02cf5e8a debuginfo(build-id) = 77bd18262c3c13b9ba40f1b9048228608653100c debuginfo(build-id) = 8045b651a41b45d1afb2b518296a898c4f0201bc debuginfo(build-id) = 8ac673c1ec5958f34d20a3e28185b90ce1a5fb00 debuginfo(build-id) = 8e9eec85b986c810e14c962d0f167ded0ac4ef05 debuginfo(build-id) = 8f2875ef8ed2c8ff1987ca4ac36b18b23bbc531e debuginfo(build-id) = 8f3e091f90c0198ab0fdad93078cb7a6beccc0cc debuginfo(build-id) = 9449c5e1ca5aac0e80105493e22ae4ea14932f88 debuginfo(build-id) = 9549e2eeb6fea7b01ebbb7e4ba785deef0e938b8 debuginfo(build-id) = 98560da406d1880b82ee0a21ed5dd84e3845a4e2 debuginfo(build-id) = a35b43f80e165e7e855a1b70f67f7bb147050e55 debuginfo(build-id) = a8107ee6264a501a6f0eca9f742bef00bd2b1b26 debuginfo(build-id) = ad228a0d9d913fa07b96607ea4e63739aab9dcd5 debuginfo(build-id) = b35e44bac029d69376cd61154a044c4e471838f1 debuginfo(build-id) = b4696a419fe4fea96e5682b48e5500a8bd8e91d8 debuginfo(build-id) = b99a2ebc9e4eb777088c8da8b58cfdac4943de55 debuginfo(build-id) = bc675136fdbb939a2ad7b7d5f2525ef73d6668db debuginfo(build-id) = c0daa5b2a5c7924bc14deac2afbe5f294677a017 debuginfo(build-id) = c2b7f751c0a7f5ef97324913ca27c9db55796a67 debuginfo(build-id) = c7ab1b08b250a136688bbacb76ded345eaca8dbf debuginfo(build-id) = cc7b9033e8d8ea91c0c626433e57e3c9fe8827ea debuginfo(build-id) = d879c377f59520bb287281f81c0f86559e6c6ea5 debuginfo(build-id) = ddaabb60a00c3a178856febd5becba2900971b1d debuginfo(build-id) = e29e9107202bf2c72c63004428eed21dc44c542b debuginfo(build-id) = ed3ee11c57f10a0041c2ad6cd5e84e5bad276b99 debuginfo(build-id) = f31ee0171bb7f91449eef706183675518ca5a6a3 rdkit-debuginfo = 2019.03.3-9.fc33 rdkit-debuginfo(x86-64) = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2019.03.3-9.fc33 Processing files: python3-rdkit-debuginfo-2019.03.3-9.fc33.x86_64 Provides: debuginfo(build-id) = 034f18c7e10b605f1c9c7d5b0032b473555937ee debuginfo(build-id) = 0520f6fb94e74b369fc7b60fbe55e019e229fbe8 debuginfo(build-id) = 087e1df0cb4d6ce175561b72f91e1a7cb95797b1 debuginfo(build-id) = 0caeaa614329f83bf6464d66ec85fa1dbf858b27 debuginfo(build-id) = 0ff3e60c81257de7049c4ae88113e2929a516683 debuginfo(build-id) = 17d270e127485c50e7b2c1d2bc9df519620a3554 debuginfo(build-id) = 2f8797253cf8a384b9adb40881158da9d1a2da0b debuginfo(build-id) = 39efc4233b9f096adc1ef32d99979da39ef71819 debuginfo(build-id) = 3fbd9f538bb535d7ba3c39edb2c92b7d9f01efdb debuginfo(build-id) = 44eb257082246dd030e015ff4cda0f31e64a4733 debuginfo(build-id) = 4aa27598104ca9bfbdb20a3f77b43fa5c483b5f8 debuginfo(build-id) = 55ba1ff3a4b3b0e6931d5d928f136eb80499d6ad debuginfo(build-id) = 56bad57df8eac7ec44fddccc6f69309476e1c688 debuginfo(build-id) = 5c3ddd3f295848ba2df0d85b7ff649468be5ce25 debuginfo(build-id) = 6227cb39fc1ac9836d0c3f0df9fcfb5fe9e2b5f0 debuginfo(build-id) = 690f02f20b30099a0344ad23eb5da4f7e2929e55 debuginfo(build-id) = 69c5acdd61933de60e4d18cfab65c253506305ef debuginfo(build-id) = 69feb73589b9a0cf7f53494ae27ca5080a5a019b debuginfo(build-id) = 6d038a9d0aa6dfe0a91eec1ba2713a5a2e1c0338 debuginfo(build-id) = 6d038b6e85b69fa5f3835586d944a7d232eeda9c debuginfo(build-id) = 77f60bd1b430cbd3cc474bc05b7fdf85511110ac debuginfo(build-id) = 7b195adceac04d294396ed8c9b42ddb53c952ddc debuginfo(build-id) = 8031bc44c8947fb8f3dacece7b8394346c8e4559 debuginfo(build-id) = 8629263ac1c6e5f700366fb51b1df984733455fe debuginfo(build-id) = 882a27ca08f2fd3f8f2841d6254ee94707e4a378 debuginfo(build-id) = 8d9f85a7d303288daa6315f40be00f86026e935d debuginfo(build-id) = 9675a37c53ecf1028d564f9bc8a14cfbf15240c2 debuginfo(build-id) = b1f2d036db9470723c1cc7d59502648213d2626b debuginfo(build-id) = bbec552443ed65084e6a09e20051ac1622e289c0 debuginfo(build-id) = c1dccaf8485658fbd70f47538953ac97f3a318ec debuginfo(build-id) = c6aa1c912eac0ed0494d7942a2f6dbafd70e3efc debuginfo(build-id) = d268c2ced5fb5e9ac0fceb4dca9449c72e991638 debuginfo(build-id) = d6ba138df622e3e9cb517fc7457dbce69e3e5812 debuginfo(build-id) = da7fc049659ac0d809af2e1143c060c86ed5cdfd debuginfo(build-id) = e2480cea294b3d17732da216046d17d981ea5fa0 debuginfo(build-id) = e68527a851947351952fda9697237f518387701f debuginfo(build-id) = ec7324edb373533975d1a8c3dbe64765eb4bd6f5 debuginfo(build-id) = ee27d8327282b3f75d0faa4dc5585f9adb4bc68b debuginfo(build-id) = f398fc4339daaaf0b5d9c3991320898c0e6763f5 debuginfo(build-id) = f4613051736844163bcd48cdd60ebf8f8f01aec3 debuginfo(build-id) = f7ad5762e6074c2d25f70fb01058354425ee58d0 debuginfo(build-id) = f8e5cb7f76e9e9e32331cf6ea093c9c44a9858ae python-rdkit-debuginfo = 2019.03.3-9.fc33 python3-rdkit-debuginfo = 2019.03.3-9.fc33 python3-rdkit-debuginfo(x86-64) = 2019.03.3-9.fc33 python3.9-rdkit-debuginfo = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2019.03.3-9.fc33 Processing files: rdkit-postgresql-debuginfo-2019.03.3-9.fc33.x86_64 Provides: debuginfo(build-id) = 7f6739c7926f473d237966c3898b249819ee39e6 rdkit-postgresql-debuginfo = 2019.03.3-9.fc33 rdkit-postgresql-debuginfo(x86-64) = 2019.03.3-9.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2019.03.3-9.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 Wrote: /builddir/build/RPMS/rdkit-debuginfo-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-debugsource-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-devel-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2019.03.3-9.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-doc-2019.03.3-9.fc33.noarch.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-2019.03.3-9.fc33.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.EZH6qu + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2019_03_3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2019.03.3-9.fc33.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild rdkit-2019.03.3-9.fc33.src.rpm Finish: build phase for rdkit-2019.03.3-9.fc33.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1594438793.858846/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1594438793.858846/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1594438793.858846/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/rdkit-2019.03.3-9.fc33.src.rpm) Config(child) 51 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run