The Comprehensive R Archive Network

Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d0' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 3330029 --chroot fedora-rawhide-x86_64 --detached Version: 0.55.2 PID: 4754 Logging PID: 4755 Task: {'appstream': True, 'background': True, 'bootstrap': 'off', 'build_id': 3330029, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '1986be9361d34c1ec2668934def1ba2333a8f968', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jvanek/java17/R.git', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R', 'package_version': '4.1.2-4.fc35', 'project_dirname': 'java17', 'project_name': 'java17', 'project_owner': 'jvanek', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jvanek/java17/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'jvanek/java17--https://src.fedoraproject.org/user/jvanek', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/jvanek', 'tags': [], 'task_id': '3330029-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jvanek/java17/R.git /var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jvanek/java17/R.git', '/var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R'... Running: git checkout 1986be9361d34c1ec2668934def1ba2333a8f968 cmd: ['git', 'checkout', '1986be9361d34c1ec2668934def1ba2333a8f968'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R rc: 0 stdout: stderr: Note: switching to '1986be9361d34c1ec2668934def1ba2333a8f968'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1986be9 automatic import of R Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading R-4.1.2.tar.gz INFO: Calling: curl -H Pragma: -o R-4.1.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jvanek/java17/R/R-4.1.2.tar.gz/md5/6e28db9d02c6d3dae51a149b8e261ab1/R-4.1.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 32.4M 100 32.4M 0 0 8283k 0 0:00:04 0:00:04 --:--:-- 8284k INFO: Reading stdout from command: md5sum R-4.1.2.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R/R.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1644126413.320478 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.16 starting (python version = 3.10.2, NVR = mock-2.16-1.fc35)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R/R.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.16 INFO: Mock Version: 2.16 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 31 MB/s | 6.2 MB 00:00 fedora 28 MB/s | 64 MB 00:02 Last metadata expiration check: 0:00:01 ago on Sun Feb 6 05:46:58 2022. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.1.16-2.fc36 fedora 1.7 M bzip2 x86_64 1.0.8-11.fc36 fedora 52 k coreutils x86_64 9.0-3.fc36 fedora 1.1 M cpio x86_64 2.13-12.fc36 fedora 270 k diffutils x86_64 3.8-2.fc36 fedora 370 k fedora-release-common noarch 36-0.13 fedora 22 k findutils x86_64 1:4.9.0-1.fc36 fedora 483 k gawk x86_64 5.1.1-2.fc36 fedora 1.0 M glibc-minimal-langpack x86_64 2.34.9000-38.fc36 fedora 150 k grep x86_64 3.7-2.fc36 fedora 263 k gzip x86_64 1.11-2.fc36 fedora 156 k info x86_64 6.8-3.fc36 fedora 225 k patch x86_64 2.7.6-16.fc36 fedora 124 k redhat-rpm-config noarch 212-1.fc36 fedora 68 k rpm-build x86_64 4.17.0-8.fc36 fedora 60 k sed x86_64 4.8-10.fc36 fedora 297 k shadow-utils x86_64 2:4.9-10.fc36 fedora 1.1 M tar x86_64 2:1.34-3.fc36 fedora 877 k unzip x86_64 6.0-57.fc36 fedora 182 k util-linux x86_64 2.38-0.2.fc36 fedora 2.2 M which x86_64 2.21-32.fc36 fedora 42 k xz x86_64 5.2.5-8.fc36 fedora 214 k Installing dependencies: alternatives x86_64 1.19-2.fc36 fedora 36 k audit-libs x86_64 3.0.7-1.fc36 fedora 116 k authselect x86_64 1.3.0-8.fc36 fedora 138 k authselect-libs x86_64 1.3.0-8.fc36 fedora 225 k basesystem noarch 11-13.fc36 fedora 7.0 k binutils x86_64 2.37-24.fc36 fedora 6.0 M binutils-gold x86_64 2.37-24.fc36 fedora 758 k bzip2-libs x86_64 1.0.8-11.fc36 fedora 41 k ca-certificates noarch 2021.2.52-3.fc36 fedora 367 k coreutils-common x86_64 9.0-3.fc36 fedora 2.0 M cracklib x86_64 2.9.6-28.fc36 fedora 81 k crypto-policies noarch 20220203-2.git112f859.fc36 copr_base 58 k curl x86_64 7.81.0-2.fc36 fedora 310 k cyrus-sasl-lib x86_64 2.1.27-17.fc36 fedora 777 k debugedit x86_64 5.0-3.fc36 fedora 77 k dwz x86_64 0.14-2.fc35 fedora 127 k ed x86_64 1.14.2-12.fc36 fedora 73 k efi-srpm-macros noarch 5-5.fc36 fedora 22 k elfutils x86_64 0.186-1.fc36 fedora 521 k elfutils-debuginfod-client x86_64 0.186-1.fc36 fedora 40 k elfutils-default-yama-scope noarch 0.186-1.fc36 fedora 19 k elfutils-libelf x86_64 0.186-1.fc36 fedora 200 k elfutils-libs x86_64 0.186-1.fc36 fedora 256 k fedora-gpg-keys noarch 36-0.3 fedora 113 k fedora-release noarch 36-0.13 fedora 12 k fedora-release-identity-basic noarch 36-0.13 fedora 12 k fedora-repos noarch 36-0.3 fedora 11 k fedora-repos-rawhide noarch 36-0.3 fedora 10 k file x86_64 5.41-4.fc36 fedora 48 k file-libs x86_64 5.41-4.fc36 fedora 634 k filesystem x86_64 3.16-2.fc36 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-7.fc36 fedora 27 k fpc-srpm-macros noarch 1.3-5.fc36 fedora 7.6 k gdb-minimal x86_64 11.1-12.fc36 fedora 3.8 M gdbm-libs x86_64 1:1.22-2.fc36 fedora 58 k ghc-srpm-macros noarch 1.5.0-6.fc36 fedora 7.7 k glibc x86_64 2.34.9000-38.fc36 fedora 2.2 M glibc-common x86_64 2.34.9000-38.fc36 fedora 426 k glibc-gconv-extra x86_64 2.34.9000-38.fc36 fedora 1.6 M gmp x86_64 1:6.2.1-2.fc36 fedora 315 k gnat-srpm-macros noarch 4-15.fc36 fedora 8.2 k go-srpm-macros noarch 3.0.15-1.fc36 fedora 26 k kernel-srpm-macros noarch 1.0-14.fc36 fedora 9.1 k keyutils-libs x86_64 1.6.1-4.fc36 fedora 31 k krb5-libs x86_64 1.19.2-5.fc36 fedora 724 k libacl x86_64 2.3.1-3.fc36 fedora 24 k libarchive x86_64 3.5.2-5.fc36 fedora 394 k libattr x86_64 2.5.1-4.fc36 fedora 18 k libblkid x86_64 2.38-0.2.fc36 fedora 107 k libbrotli x86_64 1.0.9-7.fc36 fedora 316 k libcap x86_64 2.48-4.fc36 fedora 67 k libcap-ng x86_64 0.8.2-9.fc36 fedora 33 k libcom_err x86_64 1.46.5-2.fc36 fedora 25 k libcurl x86_64 7.81.0-2.fc36 fedora 295 k libdb x86_64 5.3.28-51.fc36 fedora 766 k libeconf x86_64 0.4.0-3.fc36 fedora 27 k libevent x86_64 2.1.12-6.fc36 fedora 261 k libfdisk x86_64 2.38-0.2.fc36 fedora 158 k libffi x86_64 3.4.2-8.fc36 fedora 37 k libgcc x86_64 12.0.1-0.5.fc36 fedora 90 k libgcrypt x86_64 1.10.0-1.fc36 fedora 512 k libgomp x86_64 12.0.1-0.5.fc36 fedora 277 k libgpg-error x86_64 1.44-1.fc36 fedora 221 k libidn2 x86_64 2.3.2-4.fc36 fedora 103 k libmount x86_64 2.38-0.2.fc36 fedora 135 k libnghttp2 x86_64 1.46.0-2.fc36 fedora 71 k libnsl2 x86_64 2.0.0-3.fc36 fedora 30 k libpkgconf x86_64 1.8.0-2.fc36 fedora 36 k libpsl x86_64 0.21.1-5.fc36 fedora 64 k libpwquality x86_64 1.4.4-7.fc36 fedora 104 k libselinux x86_64 3.3-4.fc36 fedora 85 k libsemanage x86_64 3.3-2.fc36 fedora 117 k libsepol x86_64 3.3-3.fc36 fedora 309 k libsigsegv x86_64 2.14-2.fc36 fedora 27 k libsmartcols x86_64 2.38-0.2.fc36 fedora 64 k libssh x86_64 0.9.6-4.fc36 fedora 203 k libssh-config noarch 0.9.6-4.fc36 fedora 7.6 k libstdc++ x86_64 12.0.1-0.5.fc36 fedora 756 k libtasn1 x86_64 4.18.0-2.fc36 fedora 75 k libtirpc x86_64 1.3.2-1.rc1.fc36.1 fedora 94 k libunistring x86_64 1.0-1.fc36 fedora 551 k libutempter x86_64 1.2.1-6.fc36 fedora 26 k libuuid x86_64 2.38-0.2.fc36 fedora 28 k libverto x86_64 0.3.2-3.fc36 fedora 21 k libxcrypt x86_64 4.4.28-1.fc36 fedora 119 k libxml2 x86_64 2.9.12-7.fc36 fedora 746 k libzstd x86_64 1.5.2-1.fc36 fedora 295 k lua-libs x86_64 5.4.4-1.fc36 fedora 217 k lua-srpm-macros noarch 1-6.fc36 fedora 8.5 k lz4-libs x86_64 1.9.3-4.fc36 fedora 70 k mpfr x86_64 4.1.0-9.fc36 fedora 333 k ncurses-base noarch 6.2-9.20210508.fc36 fedora 60 k ncurses-libs x86_64 6.2-9.20210508.fc36 fedora 326 k nim-srpm-macros noarch 3-6.fc36 fedora 8.3 k ocaml-srpm-macros noarch 6-6.fc36 fedora 7.7 k openblas-srpm-macros noarch 2-11.fc36 fedora 7.4 k openldap x86_64 2.6.1-2.fc36 fedora 254 k openldap-compat x86_64 2.6.1-2.fc36 fedora 18 k openssl-libs x86_64 1:3.0.0-1.fc36 fedora 2.1 M p11-kit x86_64 0.24.1-2.fc36 fedora 362 k p11-kit-trust x86_64 0.24.1-2.fc36 fedora 138 k package-notes-srpm-macros noarch 0.4-14.fc36 fedora 11 k pam x86_64 1.5.2-10.fc36 fedora 553 k pcre x86_64 8.45-1.fc36.1 fedora 203 k pcre2 x86_64 10.39-1.fc36.1 fedora 231 k pcre2-syntax noarch 10.39-1.fc36.1 fedora 143 k perl-srpm-macros noarch 1-43.fc36 fedora 8.4 k pkgconf x86_64 1.8.0-2.fc36 fedora 41 k pkgconf-m4 noarch 1.8.0-2.fc36 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-2.fc36 fedora 10 k popt x86_64 1.18-7.fc36 fedora 59 k publicsuffix-list-dafsa noarch 20210518-4.fc36 fedora 58 k python-srpm-macros noarch 3.10-16.fc36 fedora 26 k qt5-srpm-macros noarch 5.15.2-4.fc36 fedora 8.1 k readline x86_64 8.1-6.fc36 fedora 211 k rpm x86_64 4.17.0-8.fc36 fedora 539 k rpm-build-libs x86_64 4.17.0-8.fc36 fedora 94 k rpm-libs x86_64 4.17.0-8.fc36 fedora 317 k rpmautospec-rpm-macros noarch 0.2.5-1.fc35 fedora 9.9 k rust-srpm-macros noarch 20-2.fc36 fedora 9.3 k setup noarch 2.13.9.1-3.fc36 fedora 143 k sqlite-libs x86_64 3.36.0-5.fc36 fedora 642 k systemd-libs x86_64 250.3-3.fc36 fedora 617 k tzdata noarch 2021e-2.fc36 fedora 431 k util-linux-core x86_64 2.38-0.2.fc36 fedora 454 k xxhash-libs x86_64 0.8.1-2.fc36 fedora 42 k xz-libs x86_64 5.2.5-8.fc36 fedora 93 k zip x86_64 3.0-32.fc36 fedora 260 k zlib x86_64 1.2.11-31.fc36 fedora 91 k zstd x86_64 1.5.2-1.fc36 fedora 449 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 51 M Installed size: 185 M Downloading Packages: (1/152): crypto-policies-20220203-2.git112f859. 604 kB/s | 58 kB 00:00 (2/152): alternatives-1.19-2.fc36.x86_64.rpm 140 kB/s | 36 kB 00:00 (3/152): audit-libs-3.0.7-1.fc36.x86_64.rpm 277 kB/s | 116 kB 00:00 (4/152): authselect-1.3.0-8.fc36.x86_64.rpm 343 kB/s | 138 kB 00:00 (5/152): basesystem-11-13.fc36.noarch.rpm 70 kB/s | 7.0 kB 00:00 (6/152): authselect-libs-1.3.0-8.fc36.x86_64.rp 658 kB/s | 225 kB 00:00 (7/152): binutils-gold-2.37-24.fc36.x86_64.rpm 1.2 MB/s | 758 kB 00:00 (8/152): bzip2-1.0.8-11.fc36.x86_64.rpm 482 kB/s | 52 kB 00:00 (9/152): bash-5.1.16-2.fc36.x86_64.rpm 1.9 MB/s | 1.7 MB 00:00 (10/152): binutils-2.37-24.fc36.x86_64.rpm 6.9 MB/s | 6.0 MB 00:00 (11/152): bzip2-libs-1.0.8-11.fc36.x86_64.rpm 467 kB/s | 41 kB 00:00 (12/152): coreutils-9.0-3.fc36.x86_64.rpm 6.3 MB/s | 1.1 MB 00:00 (13/152): ca-certificates-2021.2.52-3.fc36.noar 1.6 MB/s | 367 kB 00:00 (14/152): cpio-2.13-12.fc36.x86_64.rpm 3.1 MB/s | 270 kB 00:00 (15/152): cracklib-2.9.6-28.fc36.x86_64.rpm 686 kB/s | 81 kB 00:00 (16/152): curl-7.81.0-2.fc36.x86_64.rpm 3.6 MB/s | 310 kB 00:00 (17/152): debugedit-5.0-3.fc36.x86_64.rpm 967 kB/s | 77 kB 00:00 (18/152): diffutils-3.8-2.fc36.x86_64.rpm 4.2 MB/s | 370 kB 00:00 (19/152): cyrus-sasl-lib-2.1.27-17.fc36.x86_64. 3.2 MB/s | 777 kB 00:00 (20/152): dwz-0.14-2.fc35.x86_64.rpm 1.2 MB/s | 127 kB 00:00 (21/152): ed-1.14.2-12.fc36.x86_64.rpm 930 kB/s | 73 kB 00:00 (22/152): efi-srpm-macros-5-5.fc36.noarch.rpm 243 kB/s | 22 kB 00:00 (23/152): elfutils-0.186-1.fc36.x86_64.rpm 3.2 MB/s | 521 kB 00:00 (24/152): elfutils-debuginfod-client-0.186-1.fc 425 kB/s | 40 kB 00:00 (25/152): coreutils-common-9.0-3.fc36.x86_64.rp 2.3 MB/s | 2.0 MB 00:00 (26/152): elfutils-default-yama-scope-0.186-1.f 241 kB/s | 19 kB 00:00 (27/152): elfutils-libelf-0.186-1.fc36.x86_64.r 1.7 MB/s | 200 kB 00:00 (28/152): fedora-gpg-keys-36-0.3.noarch.rpm 1.4 MB/s | 113 kB 00:00 (29/152): fedora-release-36-0.13.noarch.rpm 139 kB/s | 12 kB 00:00 (30/152): elfutils-libs-0.186-1.fc36.x86_64.rpm 1.6 MB/s | 256 kB 00:00 (31/152): fedora-release-common-36-0.13.noarch. 279 kB/s | 22 kB 00:00 (32/152): fedora-release-identity-basic-36-0.13 159 kB/s | 12 kB 00:00 (33/152): fedora-repos-36-0.3.noarch.rpm 140 kB/s | 11 kB 00:00 (34/152): fedora-repos-rawhide-36-0.3.noarch.rp 118 kB/s | 10 kB 00:00 (35/152): file-5.41-4.fc36.x86_64.rpm 609 kB/s | 48 kB 00:00 (36/152): findutils-4.9.0-1.fc36.x86_64.rpm 5.3 MB/s | 483 kB 00:00 (37/152): fonts-srpm-macros-2.0.5-7.fc36.noarch 339 kB/s | 27 kB 00:00 (38/152): fpc-srpm-macros-1.3-5.fc36.noarch.rpm 97 kB/s | 7.6 kB 00:00 (39/152): filesystem-3.16-2.fc36.x86_64.rpm 3.5 MB/s | 1.1 MB 00:00 (40/152): gawk-5.1.1-2.fc36.x86_64.rpm 6.1 MB/s | 1.0 MB 00:00 (41/152): file-libs-5.41-4.fc36.x86_64.rpm 1.1 MB/s | 634 kB 00:00 (42/152): gdbm-libs-1.22-2.fc36.x86_64.rpm 728 kB/s | 58 kB 00:00 (43/152): ghc-srpm-macros-1.5.0-6.fc36.noarch.r 99 kB/s | 7.7 kB 00:00 (44/152): glibc-2.34.9000-38.fc36.x86_64.rpm 7.0 MB/s | 2.2 MB 00:00 (45/152): glibc-common-2.34.9000-38.fc36.x86_64 1.1 MB/s | 426 kB 00:00 (46/152): glibc-minimal-langpack-2.34.9000-38.f 798 kB/s | 150 kB 00:00 (47/152): gdb-minimal-11.1-12.fc36.x86_64.rpm 4.5 MB/s | 3.8 MB 00:00 (48/152): glibc-gconv-extra-2.34.9000-38.fc36.x 4.6 MB/s | 1.6 MB 00:00 (49/152): gnat-srpm-macros-4-15.fc36.noarch.rpm 99 kB/s | 8.2 kB 00:00 (50/152): go-srpm-macros-3.0.15-1.fc36.noarch.r 322 kB/s | 26 kB 00:00 (51/152): gzip-1.11-2.fc36.x86_64.rpm 1.8 MB/s | 156 kB 00:00 (52/152): grep-3.7-2.fc36.x86_64.rpm 1.2 MB/s | 263 kB 00:00 (53/152): info-6.8-3.fc36.x86_64.rpm 2.6 MB/s | 225 kB 00:00 (54/152): gmp-6.2.1-2.fc36.x86_64.rpm 907 kB/s | 315 kB 00:00 (55/152): keyutils-libs-1.6.1-4.fc36.x86_64.rpm 394 kB/s | 31 kB 00:00 (56/152): kernel-srpm-macros-1.0-14.fc36.noarch 100 kB/s | 9.1 kB 00:00 [MIRROR] krb5-libs-1.19.2-5.fc36.x86_64.rpm: Status code: 404 for http://mirrors.kernel.org/fedora/development/rawhide/Everything/x86_64/os/Packages/k/krb5-libs-1.19.2-5.fc36.x86_64.rpm (IP: 2001:4f8:4:6f:0:1994:3:14) (57/152): libacl-2.3.1-3.fc36.x86_64.rpm 299 kB/s | 24 kB 00:00 (58/152): libarchive-3.5.2-5.fc36.x86_64.rpm 4.5 MB/s | 394 kB 00:00 (59/152): libblkid-2.38-0.2.fc36.x86_64.rpm 1.3 MB/s | 107 kB 00:00 (60/152): libattr-2.5.1-4.fc36.x86_64.rpm 199 kB/s | 18 kB 00:00 (61/152): libbrotli-1.0.9-7.fc36.x86_64.rpm 3.6 MB/s | 316 kB 00:00 (62/152): libcap-2.48-4.fc36.x86_64.rpm 492 kB/s | 67 kB 00:00 (63/152): libcap-ng-0.8.2-9.fc36.x86_64.rpm 369 kB/s | 33 kB 00:00 (64/152): krb5-libs-1.19.2-5.fc36.x86_64.rpm 1.6 MB/s | 724 kB 00:00 (65/152): libcom_err-1.46.5-2.fc36.x86_64.rpm 254 kB/s | 25 kB 00:00 (66/152): libcurl-7.81.0-2.fc36.x86_64.rpm 3.3 MB/s | 295 kB 00:00 (67/152): libeconf-0.4.0-3.fc36.x86_64.rpm 353 kB/s | 27 kB 00:00 (68/152): libevent-2.1.12-6.fc36.x86_64.rpm 2.9 MB/s | 261 kB 00:00 (69/152): libfdisk-2.38-0.2.fc36.x86_64.rpm 1.9 MB/s | 158 kB 00:00 (70/152): libffi-3.4.2-8.fc36.x86_64.rpm 453 kB/s | 37 kB 00:00 [MIRROR] libgcc-12.0.1-0.5.fc36.x86_64.rpm: Status code: 404 for http://mirrors.kernel.org/fedora/development/rawhide/Everything/x86_64/os/Packages/l/libgcc-12.0.1-0.5.fc36.x86_64.rpm (IP: 2001:4f8:4:6f:0:1994:3:14) (71/152): libgcc-12.0.1-0.5.fc36.x86_64.rpm 940 kB/s | 90 kB 00:00 [MIRROR] libgomp-12.0.1-0.5.fc36.x86_64.rpm: Status code: 404 for http://mirrors.kernel.org/fedora/development/rawhide/Everything/x86_64/os/Packages/l/libgomp-12.0.1-0.5.fc36.x86_64.rpm (IP: 2001:4f8:4:6f:0:1994:3:14) (72/152): libgomp-12.0.1-0.5.fc36.x86_64.rpm 2.6 MB/s | 277 kB 00:00 (73/152): libgcrypt-1.10.0-1.fc36.x86_64.rpm 2.9 MB/s | 512 kB 00:00 (74/152): libgpg-error-1.44-1.fc36.x86_64.rpm 9.1 MB/s | 221 kB 00:00 (75/152): 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/usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-36-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-2.fc36.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.0.1-0.5.fc36.x86_64 1/152 Running scriptlet: libgcc-12.0.1-0.5.fc36.x86_64 1/152 Installing : crypto-policies-20220203-2.git112f859.fc36.noarc 2/152 Running scriptlet: crypto-policies-20220203-2.git112f859.fc36.noarc 2/152 Installing : fedora-release-identity-basic-36-0.13.noarch 3/152 Installing : tzdata-2021e-2.fc36.noarch 4/152 Installing : rust-srpm-macros-20-2.fc36.noarch 5/152 Installing : qt5-srpm-macros-5.15.2-4.fc36.noarch 6/152 Installing : publicsuffix-list-dafsa-20210518-4.fc36.noarch 7/152 Installing : pkgconf-m4-1.8.0-2.fc36.noarch 8/152 Installing : perl-srpm-macros-1-43.fc36.noarch 9/152 Installing : pcre2-syntax-10.39-1.fc36.1.noarch 10/152 Installing : openblas-srpm-macros-2-11.fc36.noarch 11/152 Installing : ocaml-srpm-macros-6-6.fc36.noarch 12/152 Installing : nim-srpm-macros-3-6.fc36.noarch 13/152 Installing : ncurses-base-6.2-9.20210508.fc36.noarch 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libutempter-1.2.1-6.fc36.x86_64 103/152 Installing : libutempter-1.2.1-6.fc36.x86_64 103/152 Installing : patch-2.7.6-16.fc36.x86_64 104/152 Installing : tar-2:1.34-3.fc36.x86_64 105/152 Installing : xxhash-libs-0.8.1-2.fc36.x86_64 106/152 Installing : coreutils-common-9.0-3.fc36.x86_64 107/152 Installing : openssl-libs-1:3.0.0-1.fc36.x86_64 108/152 Installing : coreutils-9.0-3.fc36.x86_64 109/152 Running scriptlet: ca-certificates-2021.2.52-3.fc36.noarch 110/152 Installing : ca-certificates-2021.2.52-3.fc36.noarch 110/152 Running scriptlet: ca-certificates-2021.2.52-3.fc36.noarch 110/152 Installing : krb5-libs-1.19.2-5.fc36.x86_64 111/152 Installing : libblkid-2.38-0.2.fc36.x86_64 112/152 Running scriptlet: libblkid-2.38-0.2.fc36.x86_64 112/152 Installing : libmount-2.38-0.2.fc36.x86_64 113/152 Installing : libtirpc-1.3.2-1.rc1.fc36.1.x86_64 114/152 Running scriptlet: authselect-libs-1.3.0-8.fc36.x86_64 115/152 Installing : authselect-libs-1.3.0-8.fc36.x86_64 115/152 Installing : gzip-1.11-2.fc36.x86_64 116/152 Installing : systemd-libs-250.3-3.fc36.x86_64 117/152 Running scriptlet: systemd-libs-250.3-3.fc36.x86_64 117/152 Installing : util-linux-core-2.38-0.2.fc36.x86_64 118/152 Running scriptlet: util-linux-core-2.38-0.2.fc36.x86_64 118/152 Installing : cracklib-2.9.6-28.fc36.x86_64 119/152 Installing : authselect-1.3.0-8.fc36.x86_64 120/152 Installing : libnsl2-2.0.0-3.fc36.x86_64 121/152 Installing : libpwquality-1.4.4-7.fc36.x86_64 122/152 Installing : pam-1.5.2-10.fc36.x86_64 123/152 Installing : libfdisk-2.38-0.2.fc36.x86_64 124/152 Installing : cyrus-sasl-lib-2.1.27-17.fc36.x86_64 125/152 Installing : libssh-0.9.6-4.fc36.x86_64 126/152 Installing : libarchive-3.5.2-5.fc36.x86_64 127/152 Installing : libevent-2.1.12-6.fc36.x86_64 128/152 Installing : openldap-2.6.1-2.fc36.x86_64 129/152 Installing : openldap-compat-2.6.1-2.fc36.x86_64 130/152 Installing : libcurl-7.81.0-2.fc36.x86_64 131/152 Installing : elfutils-libs-0.186-1.fc36.x86_64 132/152 Installing : elfutils-debuginfod-client-0.186-1.fc36.x86_64 133/152 Installing : binutils-gold-2.37-24.fc36.x86_64 134/152 Installing : binutils-2.37-24.fc36.x86_64 135/152 Running scriptlet: binutils-2.37-24.fc36.x86_64 135/152 Installing : elfutils-0.186-1.fc36.x86_64 136/152 Installing : gdb-minimal-11.1-12.fc36.x86_64 137/152 Installing : debugedit-5.0-3.fc36.x86_64 138/152 Installing : curl-7.81.0-2.fc36.x86_64 139/152 Running scriptlet: rpm-4.17.0-8.fc36.x86_64 140/152 Installing : rpm-4.17.0-8.fc36.x86_64 140/152 Installing : rpm-libs-4.17.0-8.fc36.x86_64 141/152 Installing : rpm-build-libs-4.17.0-8.fc36.x86_64 142/152 Installing : efi-srpm-macros-5-5.fc36.noarch 143/152 Installing : lua-srpm-macros-1-6.fc36.noarch 144/152 Installing : rpmautospec-rpm-macros-0.2.5-1.fc35.noarch 145/152 Installing : fonts-srpm-macros-1:2.0.5-7.fc36.noarch 146/152 Installing : go-srpm-macros-3.0.15-1.fc36.noarch 147/152 Installing : python-srpm-macros-3.10-16.fc36.noarch 148/152 Installing : redhat-rpm-config-212-1.fc36.noarch 149/152 Installing : rpm-build-4.17.0-8.fc36.x86_64 150/152 Installing : util-linux-2.38-0.2.fc36.x86_64 151/152 Installing : which-2.21-32.fc36.x86_64 152/152 Running scriptlet: filesystem-3.16-2.fc36.x86_64 152/152 Running scriptlet: ca-certificates-2021.2.52-3.fc36.noarch 152/152 Running scriptlet: authselect-libs-1.3.0-8.fc36.x86_64 152/152 Running scriptlet: rpm-4.17.0-8.fc36.x86_64 152/152 Running scriptlet: which-2.21-32.fc36.x86_64 152/152 Verifying : crypto-policies-20220203-2.git112f859.fc36.noarc 1/152 Verifying : alternatives-1.19-2.fc36.x86_64 2/152 Verifying : audit-libs-3.0.7-1.fc36.x86_64 3/152 Verifying : authselect-1.3.0-8.fc36.x86_64 4/152 Verifying : authselect-libs-1.3.0-8.fc36.x86_64 5/152 Verifying : basesystem-11-13.fc36.noarch 6/152 Verifying : bash-5.1.16-2.fc36.x86_64 7/152 Verifying : binutils-2.37-24.fc36.x86_64 8/152 Verifying : binutils-gold-2.37-24.fc36.x86_64 9/152 Verifying : bzip2-1.0.8-11.fc36.x86_64 10/152 Verifying : bzip2-libs-1.0.8-11.fc36.x86_64 11/152 Verifying : ca-certificates-2021.2.52-3.fc36.noarch 12/152 Verifying : coreutils-9.0-3.fc36.x86_64 13/152 Verifying : coreutils-common-9.0-3.fc36.x86_64 14/152 Verifying : cpio-2.13-12.fc36.x86_64 15/152 Verifying : cracklib-2.9.6-28.fc36.x86_64 16/152 Verifying : curl-7.81.0-2.fc36.x86_64 17/152 Verifying : cyrus-sasl-lib-2.1.27-17.fc36.x86_64 18/152 Verifying : debugedit-5.0-3.fc36.x86_64 19/152 Verifying : diffutils-3.8-2.fc36.x86_64 20/152 Verifying : dwz-0.14-2.fc35.x86_64 21/152 Verifying : ed-1.14.2-12.fc36.x86_64 22/152 Verifying : efi-srpm-macros-5-5.fc36.noarch 23/152 Verifying : elfutils-0.186-1.fc36.x86_64 24/152 Verifying : elfutils-debuginfod-client-0.186-1.fc36.x86_64 25/152 Verifying : elfutils-default-yama-scope-0.186-1.fc36.noarch 26/152 Verifying : elfutils-libelf-0.186-1.fc36.x86_64 27/152 Verifying : elfutils-libs-0.186-1.fc36.x86_64 28/152 Verifying : fedora-gpg-keys-36-0.3.noarch 29/152 Verifying : fedora-release-36-0.13.noarch 30/152 Verifying : fedora-release-common-36-0.13.noarch 31/152 Verifying : fedora-release-identity-basic-36-0.13.noarch 32/152 Verifying : fedora-repos-36-0.3.noarch 33/152 Verifying : fedora-repos-rawhide-36-0.3.noarch 34/152 Verifying : file-5.41-4.fc36.x86_64 35/152 Verifying : file-libs-5.41-4.fc36.x86_64 36/152 Verifying : filesystem-3.16-2.fc36.x86_64 37/152 Verifying : findutils-1:4.9.0-1.fc36.x86_64 38/152 Verifying : fonts-srpm-macros-1:2.0.5-7.fc36.noarch 39/152 Verifying : fpc-srpm-macros-1.3-5.fc36.noarch 40/152 Verifying : gawk-5.1.1-2.fc36.x86_64 41/152 Verifying : gdb-minimal-11.1-12.fc36.x86_64 42/152 Verifying : gdbm-libs-1:1.22-2.fc36.x86_64 43/152 Verifying : ghc-srpm-macros-1.5.0-6.fc36.noarch 44/152 Verifying : glibc-2.34.9000-38.fc36.x86_64 45/152 Verifying : glibc-common-2.34.9000-38.fc36.x86_64 46/152 Verifying : glibc-gconv-extra-2.34.9000-38.fc36.x86_64 47/152 Verifying : glibc-minimal-langpack-2.34.9000-38.fc36.x86_64 48/152 Verifying : gmp-1:6.2.1-2.fc36.x86_64 49/152 Verifying : gnat-srpm-macros-4-15.fc36.noarch 50/152 Verifying : go-srpm-macros-3.0.15-1.fc36.noarch 51/152 Verifying : grep-3.7-2.fc36.x86_64 52/152 Verifying : gzip-1.11-2.fc36.x86_64 53/152 Verifying : info-6.8-3.fc36.x86_64 54/152 Verifying : kernel-srpm-macros-1.0-14.fc36.noarch 55/152 Verifying : keyutils-libs-1.6.1-4.fc36.x86_64 56/152 Verifying : krb5-libs-1.19.2-5.fc36.x86_64 57/152 Verifying : libacl-2.3.1-3.fc36.x86_64 58/152 Verifying : libarchive-3.5.2-5.fc36.x86_64 59/152 Verifying : libattr-2.5.1-4.fc36.x86_64 60/152 Verifying : libblkid-2.38-0.2.fc36.x86_64 61/152 Verifying : libbrotli-1.0.9-7.fc36.x86_64 62/152 Verifying : libcap-2.48-4.fc36.x86_64 63/152 Verifying : libcap-ng-0.8.2-9.fc36.x86_64 64/152 Verifying : libcom_err-1.46.5-2.fc36.x86_64 65/152 Verifying : libcurl-7.81.0-2.fc36.x86_64 66/152 Verifying : libdb-5.3.28-51.fc36.x86_64 67/152 Verifying : libeconf-0.4.0-3.fc36.x86_64 68/152 Verifying : libevent-2.1.12-6.fc36.x86_64 69/152 Verifying : libfdisk-2.38-0.2.fc36.x86_64 70/152 Verifying : libffi-3.4.2-8.fc36.x86_64 71/152 Verifying : libgcc-12.0.1-0.5.fc36.x86_64 72/152 Verifying : libgcrypt-1.10.0-1.fc36.x86_64 73/152 Verifying : libgomp-12.0.1-0.5.fc36.x86_64 74/152 Verifying : libgpg-error-1.44-1.fc36.x86_64 75/152 Verifying : libidn2-2.3.2-4.fc36.x86_64 76/152 Verifying : libmount-2.38-0.2.fc36.x86_64 77/152 Verifying : libnghttp2-1.46.0-2.fc36.x86_64 78/152 Verifying : libnsl2-2.0.0-3.fc36.x86_64 79/152 Verifying : libpkgconf-1.8.0-2.fc36.x86_64 80/152 Verifying : libpsl-0.21.1-5.fc36.x86_64 81/152 Verifying : libpwquality-1.4.4-7.fc36.x86_64 82/152 Verifying : libselinux-3.3-4.fc36.x86_64 83/152 Verifying : libsemanage-3.3-2.fc36.x86_64 84/152 Verifying : libsepol-3.3-3.fc36.x86_64 85/152 Verifying : libsigsegv-2.14-2.fc36.x86_64 86/152 Verifying : libsmartcols-2.38-0.2.fc36.x86_64 87/152 Verifying : libssh-0.9.6-4.fc36.x86_64 88/152 Verifying : libssh-config-0.9.6-4.fc36.noarch 89/152 Verifying : libstdc++-12.0.1-0.5.fc36.x86_64 90/152 Verifying : libtasn1-4.18.0-2.fc36.x86_64 91/152 Verifying : libtirpc-1.3.2-1.rc1.fc36.1.x86_64 92/152 Verifying : libunistring-1.0-1.fc36.x86_64 93/152 Verifying : libutempter-1.2.1-6.fc36.x86_64 94/152 Verifying : libuuid-2.38-0.2.fc36.x86_64 95/152 Verifying : libverto-0.3.2-3.fc36.x86_64 96/152 Verifying : libxcrypt-4.4.28-1.fc36.x86_64 97/152 Verifying : libxml2-2.9.12-7.fc36.x86_64 98/152 Verifying : libzstd-1.5.2-1.fc36.x86_64 99/152 Verifying : lua-libs-5.4.4-1.fc36.x86_64 100/152 Verifying : lua-srpm-macros-1-6.fc36.noarch 101/152 Verifying : lz4-libs-1.9.3-4.fc36.x86_64 102/152 Verifying : mpfr-4.1.0-9.fc36.x86_64 103/152 Verifying : ncurses-base-6.2-9.20210508.fc36.noarch 104/152 Verifying : ncurses-libs-6.2-9.20210508.fc36.x86_64 105/152 Verifying : nim-srpm-macros-3-6.fc36.noarch 106/152 Verifying : ocaml-srpm-macros-6-6.fc36.noarch 107/152 Verifying : openblas-srpm-macros-2-11.fc36.noarch 108/152 Verifying : openldap-2.6.1-2.fc36.x86_64 109/152 Verifying : openldap-compat-2.6.1-2.fc36.x86_64 110/152 Verifying : openssl-libs-1:3.0.0-1.fc36.x86_64 111/152 Verifying : p11-kit-0.24.1-2.fc36.x86_64 112/152 Verifying : p11-kit-trust-0.24.1-2.fc36.x86_64 113/152 Verifying : package-notes-srpm-macros-0.4-14.fc36.noarch 114/152 Verifying : pam-1.5.2-10.fc36.x86_64 115/152 Verifying : patch-2.7.6-16.fc36.x86_64 116/152 Verifying : pcre-8.45-1.fc36.1.x86_64 117/152 Verifying : pcre2-10.39-1.fc36.1.x86_64 118/152 Verifying : pcre2-syntax-10.39-1.fc36.1.noarch 119/152 Verifying : perl-srpm-macros-1-43.fc36.noarch 120/152 Verifying : pkgconf-1.8.0-2.fc36.x86_64 121/152 Verifying : pkgconf-m4-1.8.0-2.fc36.noarch 122/152 Verifying : pkgconf-pkg-config-1.8.0-2.fc36.x86_64 123/152 Verifying : popt-1.18-7.fc36.x86_64 124/152 Verifying : publicsuffix-list-dafsa-20210518-4.fc36.noarch 125/152 Verifying : python-srpm-macros-3.10-16.fc36.noarch 126/152 Verifying : qt5-srpm-macros-5.15.2-4.fc36.noarch 127/152 Verifying : readline-8.1-6.fc36.x86_64 128/152 Verifying : redhat-rpm-config-212-1.fc36.noarch 129/152 Verifying : rpm-4.17.0-8.fc36.x86_64 130/152 Verifying : rpm-build-4.17.0-8.fc36.x86_64 131/152 Verifying : rpm-build-libs-4.17.0-8.fc36.x86_64 132/152 Verifying : rpm-libs-4.17.0-8.fc36.x86_64 133/152 Verifying : rpmautospec-rpm-macros-0.2.5-1.fc35.noarch 134/152 Verifying : rust-srpm-macros-20-2.fc36.noarch 135/152 Verifying : sed-4.8-10.fc36.x86_64 136/152 Verifying : setup-2.13.9.1-3.fc36.noarch 137/152 Verifying : shadow-utils-2:4.9-10.fc36.x86_64 138/152 Verifying : sqlite-libs-3.36.0-5.fc36.x86_64 139/152 Verifying : systemd-libs-250.3-3.fc36.x86_64 140/152 Verifying : tar-2:1.34-3.fc36.x86_64 141/152 Verifying : tzdata-2021e-2.fc36.noarch 142/152 Verifying : unzip-6.0-57.fc36.x86_64 143/152 Verifying : util-linux-2.38-0.2.fc36.x86_64 144/152 Verifying : util-linux-core-2.38-0.2.fc36.x86_64 145/152 Verifying : which-2.21-32.fc36.x86_64 146/152 Verifying : xxhash-libs-0.8.1-2.fc36.x86_64 147/152 Verifying : xz-5.2.5-8.fc36.x86_64 148/152 Verifying : xz-libs-5.2.5-8.fc36.x86_64 149/152 Verifying : zip-3.0-32.fc36.x86_64 150/152 Verifying : zlib-1.2.11-31.fc36.x86_64 151/152 Verifying : zstd-1.5.2-1.fc36.x86_64 152/152 Installed products updated. Installed: alternatives-1.19-2.fc36.x86_64 audit-libs-3.0.7-1.fc36.x86_64 authselect-1.3.0-8.fc36.x86_64 authselect-libs-1.3.0-8.fc36.x86_64 basesystem-11-13.fc36.noarch bash-5.1.16-2.fc36.x86_64 binutils-2.37-24.fc36.x86_64 binutils-gold-2.37-24.fc36.x86_64 bzip2-1.0.8-11.fc36.x86_64 bzip2-libs-1.0.8-11.fc36.x86_64 ca-certificates-2021.2.52-3.fc36.noarch coreutils-9.0-3.fc36.x86_64 coreutils-common-9.0-3.fc36.x86_64 cpio-2.13-12.fc36.x86_64 cracklib-2.9.6-28.fc36.x86_64 crypto-policies-20220203-2.git112f859.fc36.noarch curl-7.81.0-2.fc36.x86_64 cyrus-sasl-lib-2.1.27-17.fc36.x86_64 debugedit-5.0-3.fc36.x86_64 diffutils-3.8-2.fc36.x86_64 dwz-0.14-2.fc35.x86_64 ed-1.14.2-12.fc36.x86_64 efi-srpm-macros-5-5.fc36.noarch elfutils-0.186-1.fc36.x86_64 elfutils-debuginfod-client-0.186-1.fc36.x86_64 elfutils-default-yama-scope-0.186-1.fc36.noarch elfutils-libelf-0.186-1.fc36.x86_64 elfutils-libs-0.186-1.fc36.x86_64 fedora-gpg-keys-36-0.3.noarch fedora-release-36-0.13.noarch fedora-release-common-36-0.13.noarch fedora-release-identity-basic-36-0.13.noarch fedora-repos-36-0.3.noarch fedora-repos-rawhide-36-0.3.noarch file-5.41-4.fc36.x86_64 file-libs-5.41-4.fc36.x86_64 filesystem-3.16-2.fc36.x86_64 findutils-1:4.9.0-1.fc36.x86_64 fonts-srpm-macros-1:2.0.5-7.fc36.noarch fpc-srpm-macros-1.3-5.fc36.noarch gawk-5.1.1-2.fc36.x86_64 gdb-minimal-11.1-12.fc36.x86_64 gdbm-libs-1:1.22-2.fc36.x86_64 ghc-srpm-macros-1.5.0-6.fc36.noarch glibc-2.34.9000-38.fc36.x86_64 glibc-common-2.34.9000-38.fc36.x86_64 glibc-gconv-extra-2.34.9000-38.fc36.x86_64 glibc-minimal-langpack-2.34.9000-38.fc36.x86_64 gmp-1:6.2.1-2.fc36.x86_64 gnat-srpm-macros-4-15.fc36.noarch go-srpm-macros-3.0.15-1.fc36.noarch grep-3.7-2.fc36.x86_64 gzip-1.11-2.fc36.x86_64 info-6.8-3.fc36.x86_64 kernel-srpm-macros-1.0-14.fc36.noarch keyutils-libs-1.6.1-4.fc36.x86_64 krb5-libs-1.19.2-5.fc36.x86_64 libacl-2.3.1-3.fc36.x86_64 libarchive-3.5.2-5.fc36.x86_64 libattr-2.5.1-4.fc36.x86_64 libblkid-2.38-0.2.fc36.x86_64 libbrotli-1.0.9-7.fc36.x86_64 libcap-2.48-4.fc36.x86_64 libcap-ng-0.8.2-9.fc36.x86_64 libcom_err-1.46.5-2.fc36.x86_64 libcurl-7.81.0-2.fc36.x86_64 libdb-5.3.28-51.fc36.x86_64 libeconf-0.4.0-3.fc36.x86_64 libevent-2.1.12-6.fc36.x86_64 libfdisk-2.38-0.2.fc36.x86_64 libffi-3.4.2-8.fc36.x86_64 libgcc-12.0.1-0.5.fc36.x86_64 libgcrypt-1.10.0-1.fc36.x86_64 libgomp-12.0.1-0.5.fc36.x86_64 libgpg-error-1.44-1.fc36.x86_64 libidn2-2.3.2-4.fc36.x86_64 libmount-2.38-0.2.fc36.x86_64 libnghttp2-1.46.0-2.fc36.x86_64 libnsl2-2.0.0-3.fc36.x86_64 libpkgconf-1.8.0-2.fc36.x86_64 libpsl-0.21.1-5.fc36.x86_64 libpwquality-1.4.4-7.fc36.x86_64 libselinux-3.3-4.fc36.x86_64 libsemanage-3.3-2.fc36.x86_64 libsepol-3.3-3.fc36.x86_64 libsigsegv-2.14-2.fc36.x86_64 libsmartcols-2.38-0.2.fc36.x86_64 libssh-0.9.6-4.fc36.x86_64 libssh-config-0.9.6-4.fc36.noarch libstdc++-12.0.1-0.5.fc36.x86_64 libtasn1-4.18.0-2.fc36.x86_64 libtirpc-1.3.2-1.rc1.fc36.1.x86_64 libunistring-1.0-1.fc36.x86_64 libutempter-1.2.1-6.fc36.x86_64 libuuid-2.38-0.2.fc36.x86_64 libverto-0.3.2-3.fc36.x86_64 libxcrypt-4.4.28-1.fc36.x86_64 libxml2-2.9.12-7.fc36.x86_64 libzstd-1.5.2-1.fc36.x86_64 lua-libs-5.4.4-1.fc36.x86_64 lua-srpm-macros-1-6.fc36.noarch lz4-libs-1.9.3-4.fc36.x86_64 mpfr-4.1.0-9.fc36.x86_64 ncurses-base-6.2-9.20210508.fc36.noarch ncurses-libs-6.2-9.20210508.fc36.x86_64 nim-srpm-macros-3-6.fc36.noarch ocaml-srpm-macros-6-6.fc36.noarch openblas-srpm-macros-2-11.fc36.noarch openldap-2.6.1-2.fc36.x86_64 openldap-compat-2.6.1-2.fc36.x86_64 openssl-libs-1:3.0.0-1.fc36.x86_64 p11-kit-0.24.1-2.fc36.x86_64 p11-kit-trust-0.24.1-2.fc36.x86_64 package-notes-srpm-macros-0.4-14.fc36.noarch pam-1.5.2-10.fc36.x86_64 patch-2.7.6-16.fc36.x86_64 pcre-8.45-1.fc36.1.x86_64 pcre2-10.39-1.fc36.1.x86_64 pcre2-syntax-10.39-1.fc36.1.noarch perl-srpm-macros-1-43.fc36.noarch pkgconf-1.8.0-2.fc36.x86_64 pkgconf-m4-1.8.0-2.fc36.noarch pkgconf-pkg-config-1.8.0-2.fc36.x86_64 popt-1.18-7.fc36.x86_64 publicsuffix-list-dafsa-20210518-4.fc36.noarch python-srpm-macros-3.10-16.fc36.noarch qt5-srpm-macros-5.15.2-4.fc36.noarch readline-8.1-6.fc36.x86_64 redhat-rpm-config-212-1.fc36.noarch rpm-4.17.0-8.fc36.x86_64 rpm-build-4.17.0-8.fc36.x86_64 rpm-build-libs-4.17.0-8.fc36.x86_64 rpm-libs-4.17.0-8.fc36.x86_64 rpmautospec-rpm-macros-0.2.5-1.fc35.noarch rust-srpm-macros-20-2.fc36.noarch sed-4.8-10.fc36.x86_64 setup-2.13.9.1-3.fc36.noarch shadow-utils-2:4.9-10.fc36.x86_64 sqlite-libs-3.36.0-5.fc36.x86_64 systemd-libs-250.3-3.fc36.x86_64 tar-2:1.34-3.fc36.x86_64 tzdata-2021e-2.fc36.noarch unzip-6.0-57.fc36.x86_64 util-linux-2.38-0.2.fc36.x86_64 util-linux-core-2.38-0.2.fc36.x86_64 which-2.21-32.fc36.x86_64 xxhash-libs-0.8.1-2.fc36.x86_64 xz-5.2.5-8.fc36.x86_64 xz-libs-5.2.5-8.fc36.x86_64 zip-3.0-32.fc36.x86_64 zlib-1.2.11-31.fc36.x86_64 zstd-1.5.2-1.fc36.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libcurl-7.81.0-2.fc36.x86_64 libsigsegv-2.14-2.fc36.x86_64 pcre2-10.39-1.fc36.1.x86_64 patch-2.7.6-16.fc36.x86_64 bash-5.1.16-2.fc36.x86_64 libdb-5.3.28-51.fc36.x86_64 libstdc++-12.0.1-0.5.fc36.x86_64 libtasn1-4.18.0-2.fc36.x86_64 pkgconf-m4-1.8.0-2.fc36.noarch qt5-srpm-macros-5.15.2-4.fc36.noarch binutils-2.37-24.fc36.x86_64 gawk-5.1.1-2.fc36.x86_64 glibc-gconv-extra-2.34.9000-38.fc36.x86_64 crypto-policies-20220203-2.git112f859.fc36.noarch libuuid-2.38-0.2.fc36.x86_64 elfutils-default-yama-scope-0.186-1.fc36.noarch basesystem-11-13.fc36.noarch util-linux-2.38-0.2.fc36.x86_64 libgcc-12.0.1-0.5.fc36.x86_64 libnsl2-2.0.0-3.fc36.x86_64 libarchive-3.5.2-5.fc36.x86_64 libcom_err-1.46.5-2.fc36.x86_64 elfutils-libelf-0.186-1.fc36.x86_64 elfutils-0.186-1.fc36.x86_64 zlib-1.2.11-31.fc36.x86_64 libblkid-2.38-0.2.fc36.x86_64 libevent-2.1.12-6.fc36.x86_64 dwz-0.14-2.fc35.x86_64 libxml2-2.9.12-7.fc36.x86_64 curl-7.81.0-2.fc36.x86_64 rpm-libs-4.17.0-8.fc36.x86_64 openldap-2.6.1-2.fc36.x86_64 libtirpc-1.3.2-1.rc1.fc36.1.x86_64 fedora-release-common-36-0.13.noarch libeconf-0.4.0-3.fc36.x86_64 glibc-common-2.34.9000-38.fc36.x86_64 fedora-release-36-0.13.noarch zip-3.0-32.fc36.x86_64 libfdisk-2.38-0.2.fc36.x86_64 libsmartcols-2.38-0.2.fc36.x86_64 libcap-2.48-4.fc36.x86_64 pam-1.5.2-10.fc36.x86_64 systemd-libs-250.3-3.fc36.x86_64 libsepol-3.3-3.fc36.x86_64 setup-2.13.9.1-3.fc36.noarch libunistring-1.0-1.fc36.x86_64 diffutils-3.8-2.fc36.x86_64 ocaml-srpm-macros-6-6.fc36.noarch lua-libs-5.4.4-1.fc36.x86_64 openldap-compat-2.6.1-2.fc36.x86_64 nim-srpm-macros-3-6.fc36.noarch grep-3.7-2.fc36.x86_64 gdb-minimal-11.1-12.fc36.x86_64 libxcrypt-4.4.28-1.fc36.x86_64 lua-srpm-macros-1-6.fc36.noarch rpm-build-4.17.0-8.fc36.x86_64 redhat-rpm-config-212-1.fc36.noarch libutempter-1.2.1-6.fc36.x86_64 findutils-4.9.0-1.fc36.x86_64 libpkgconf-1.8.0-2.fc36.x86_64 coreutils-9.0-3.fc36.x86_64 glibc-minimal-langpack-2.34.9000-38.fc36.x86_64 libssh-config-0.9.6-4.fc36.noarch libgcrypt-1.10.0-1.fc36.x86_64 ncurses-base-6.2-9.20210508.fc36.noarch readline-8.1-6.fc36.x86_64 openssl-libs-3.0.0-1.fc36.x86_64 pkgconf-1.8.0-2.fc36.x86_64 tar-1.34-3.fc36.x86_64 p11-kit-trust-0.24.1-2.fc36.x86_64 popt-1.18-7.fc36.x86_64 p11-kit-0.24.1-2.fc36.x86_64 elfutils-debuginfod-client-0.186-1.fc36.x86_64 libzstd-1.5.2-1.fc36.x86_64 unzip-6.0-57.fc36.x86_64 libsemanage-3.3-2.fc36.x86_64 libselinux-3.3-4.fc36.x86_64 authselect-1.3.0-8.fc36.x86_64 fedora-release-identity-basic-36-0.13.noarch sqlite-libs-3.36.0-5.fc36.x86_64 sed-4.8-10.fc36.x86_64 go-srpm-macros-3.0.15-1.fc36.noarch gpg-pubkey-5323552a-6112bcdc fedora-gpg-keys-36-0.3.noarch alternatives-1.19-2.fc36.x86_64 rpmautospec-rpm-macros-0.2.5-1.fc35.noarch fedora-repos-rawhide-36-0.3.noarch elfutils-libs-0.186-1.fc36.x86_64 shadow-utils-4.9-10.fc36.x86_64 libgomp-12.0.1-0.5.fc36.x86_64 gnat-srpm-macros-4-15.fc36.noarch cyrus-sasl-lib-2.1.27-17.fc36.x86_64 ncurses-libs-6.2-9.20210508.fc36.x86_64 fonts-srpm-macros-2.0.5-7.fc36.noarch binutils-gold-2.37-24.fc36.x86_64 libgpg-error-1.44-1.fc36.x86_64 cracklib-2.9.6-28.fc36.x86_64 python-srpm-macros-3.10-16.fc36.noarch lz4-libs-1.9.3-4.fc36.x86_64 rpm-4.17.0-8.fc36.x86_64 package-notes-srpm-macros-0.4-14.fc36.noarch bzip2-libs-1.0.8-11.fc36.x86_64 mpfr-4.1.0-9.fc36.x86_64 libssh-0.9.6-4.fc36.x86_64 libnghttp2-1.46.0-2.fc36.x86_64 debugedit-5.0-3.fc36.x86_64 perl-srpm-macros-1-43.fc36.noarch xxhash-libs-0.8.1-2.fc36.x86_64 ghc-srpm-macros-1.5.0-6.fc36.noarch libacl-2.3.1-3.fc36.x86_64 coreutils-common-9.0-3.fc36.x86_64 openblas-srpm-macros-2-11.fc36.noarch gdbm-libs-1.22-2.fc36.x86_64 fpc-srpm-macros-1.3-5.fc36.noarch fedora-repos-36-0.3.noarch libidn2-2.3.2-4.fc36.x86_64 filesystem-3.16-2.fc36.x86_64 krb5-libs-1.19.2-5.fc36.x86_64 publicsuffix-list-dafsa-20210518-4.fc36.noarch file-5.41-4.fc36.x86_64 cpio-2.13-12.fc36.x86_64 libpsl-0.21.1-5.fc36.x86_64 libattr-2.5.1-4.fc36.x86_64 gmp-6.2.1-2.fc36.x86_64 pkgconf-pkg-config-1.8.0-2.fc36.x86_64 zstd-1.5.2-1.fc36.x86_64 ca-certificates-2021.2.52-3.fc36.noarch glibc-2.34.9000-38.fc36.x86_64 efi-srpm-macros-5-5.fc36.noarch authselect-libs-1.3.0-8.fc36.x86_64 audit-libs-3.0.7-1.fc36.x86_64 libcap-ng-0.8.2-9.fc36.x86_64 libffi-3.4.2-8.fc36.x86_64 rust-srpm-macros-20-2.fc36.noarch pcre2-syntax-10.39-1.fc36.1.noarch libverto-0.3.2-3.fc36.x86_64 libmount-2.38-0.2.fc36.x86_64 xz-5.2.5-8.fc36.x86_64 which-2.21-32.fc36.x86_64 file-libs-5.41-4.fc36.x86_64 ed-1.14.2-12.fc36.x86_64 xz-libs-5.2.5-8.fc36.x86_64 rpm-build-libs-4.17.0-8.fc36.x86_64 kernel-srpm-macros-1.0-14.fc36.noarch keyutils-libs-1.6.1-4.fc36.x86_64 gpg-pubkey-38ab71f4-60242b08 libpwquality-1.4.4-7.fc36.x86_64 libbrotli-1.0.9-7.fc36.x86_64 pcre-8.45-1.fc36.1.x86_64 util-linux-core-2.38-0.2.fc36.x86_64 gzip-1.11-2.fc36.x86_64 info-6.8-3.fc36.x86_64 bzip2-1.0.8-11.fc36.x86_64 tzdata-2021e-2.fc36.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644019200 Wrote: /builddir/build/SRPMS/R-4.1.2-4.fc36.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-2tb50ogd/R/R.spec) Config(child) 0 minutes 45 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/R-4.1.2-4.fc36.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1644126413.320478 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.16 starting (python version = 3.10.2, NVR = mock-2.16-1.fc35)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/R-4.1.2-4.fc36.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.16 INFO: Mock Version: 2.16 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 75 kB/s | 3.0 kB 00:00 Copr repository 33 MB/s | 6.2 MB 00:00 fedora 448 kB/s | 8.1 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for R-4.1.2-4.fc36.src.rpm Start: build setup for R-4.1.2-4.fc36.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644019200 Wrote: /builddir/build/SRPMS/R-4.1.2-4.fc36.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 96 kB/s | 3.7 kB 00:00 Copr repository 37 MB/s | 6.2 MB 00:00 fedora 446 kB/s | 8.1 kB 00:00 Dependencies resolved. ================================================================================================= Package Arch Version Repo Size ================================================================================================= Installing: autoconf noarch 2.71-2.fc36 fedora 718 k automake noarch 1.16.5-2.fc36 fedora 673 k bzip2-devel x86_64 1.0.8-11.fc36 fedora 214 k cairo-devel x86_64 1.17.4-5.fc36 fedora 191 k flexiblas-devel x86_64 3.1.2-1.fc36 fedora 107 k gcc-c++ x86_64 12.0.1-0.5.fc36 fedora 13 M gcc-gfortran x86_64 12.0.1-0.5.fc36 fedora 12 M java-17-openjdk-headless x86_64 1:17.0.2.0.8-666.fc36 copr_base 40 M less x86_64 590-3.fc36 fedora 160 k libICE-devel x86_64 1.0.10-8.fc36 fedora 46 k libSM-devel x86_64 1.2.3-10.fc36 fedora 12 k libX11-devel x86_64 1.7.3.1-2.fc36 fedora 940 k libXmu-devel x86_64 1.1.3-8.fc36 fedora 22 k libXt-devel x86_64 1.2.1-2.fc36 fedora 408 k libcurl-devel x86_64 7.81.0-2.fc36 fedora 876 k libicu-devel x86_64 69.1-5.fc36 fedora 838 k libjpeg-turbo-devel x86_64 2.1.2-2.fc36 fedora 99 k libpng-devel x86_64 2:1.6.37-12.fc36 fedora 290 k libtiff-devel x86_64 4.3.0-3.fc36 fedora 505 k libtool x86_64 2.4.6-47.fc36 fedora 578 k ncurses-devel x86_64 6.2-9.20210508.fc36 fedora 517 k pango-devel x86_64 1.50.3-2.fc36 fedora 151 k pcre-devel x86_64 8.45-1.fc36.1 fedora 470 k pcre2-devel x86_64 10.39-1.fc36.1 fedora 474 k readline-devel x86_64 8.1-6.fc36 fedora 194 k tcl-devel x86_64 1:8.6.12-2.fc36 fedora 163 k texinfo-tex x86_64 6.8-3.fc36 fedora 136 k texlive-collection-latexrecommended noarch 9:svn57862-48.fc36 fedora 14 k texlive-inconsolata noarch 9:svn54512-48.fc36 fedora 337 k texlive-upquote noarch 9:svn26059.v1.3-48.fc36 fedora 19 k tk-devel x86_64 1:8.6.12-2.fc36 fedora 486 k tre-devel x86_64 0.8.0-35.20140228gitc2f5d13.fc36 fedora 12 k valgrind-devel x86_64 1:3.18.1-9.fc36 fedora 51 k xz-devel x86_64 5.2.5-8.fc36 fedora 52 k zlib-devel x86_64 1.2.11-31.fc36 fedora 44 k Installing dependencies: adobe-mappings-cmap noarch 20190730-3.fc36 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20190730-3.fc36 fedora 113 k adobe-mappings-pdf noarch 20180407-10.fc36 fedora 627 k alsa-lib x86_64 1.2.6.1-4.fc36 fedora 499 k annobin-docs noarch 10.51-2.fc36 fedora 89 k annobin-plugin-gcc x86_64 10.51-2.fc36 fedora 815 k avahi-libs x86_64 0.8-15.fc36 fedora 68 k biber noarch 2.17-2.fc36 fedora 302 k brotli x86_64 1.0.9-7.fc36 fedora 315 k brotli-devel x86_64 1.0.9-7.fc36 fedora 31 k cairo x86_64 1.17.4-5.fc36 fedora 670 k cmake-filesystem x86_64 3.22.2-1.fc36 fedora 18 k copy-jdk-configs noarch 4.0-3.fc36 fedora 27 k cpp x86_64 12.0.1-0.5.fc36 fedora 10 M crypto-policies-scripts noarch 20220203-2.git112f859.fc36 copr_base 82 k cups-libs x86_64 1:2.4.0-3.fc36 fedora 267 k dbus-libs x86_64 1:1.13.20-3.fc36 fedora 155 k emacs-filesystem noarch 1:27.2-9.fc35 fedora 9.0 k expat x86_64 2.4.4-1.fc36 fedora 108 k flexiblas x86_64 3.1.2-1.fc36 fedora 32 k flexiblas-netlib x86_64 3.1.2-1.fc36 fedora 3.0 M flexiblas-netlib64 x86_64 3.1.2-1.fc36 fedora 2.9 M flexiblas-openblas-openmp x86_64 3.1.2-1.fc36 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.1.2-1.fc36 fedora 17 k fontconfig x86_64 2.13.96-1.fc36 fedora 276 k fontconfig-devel x86_64 2.13.96-1.fc36 fedora 128 k fonts-filesystem noarch 1:2.0.5-7.fc36 fedora 9.0 k freetype x86_64 2.11.1-2.fc36 fedora 404 k freetype-devel x86_64 2.11.1-2.fc36 fedora 848 k fribidi x86_64 1.0.11-2.fc36 fedora 52 k fribidi-devel x86_64 1.0.11-2.fc36 fedora 25 k gc x86_64 8.0.6-2.fc36 fedora 103 k gcc x86_64 12.0.1-0.5.fc36 fedora 33 M gettext x86_64 0.21-9.fc36 fedora 1.1 M gettext-libs x86_64 0.21-9.fc36 fedora 303 k ghostscript x86_64 9.55.0-3.fc36 fedora 38 k ghostscript-tools-fonts x86_64 9.55.0-3.fc36 fedora 13 k ghostscript-tools-printing x86_64 9.55.0-3.fc36 fedora 13 k glib2 x86_64 2.71.1-1.fc36 fedora 2.7 M glib2-devel x86_64 2.71.1-1.fc36 fedora 485 k glibc-devel x86_64 2.34.9000-38.fc36 fedora 163 k glibc-headers-x86 noarch 2.34.9000-38.fc36 fedora 565 k gnutls x86_64 3.7.3-2.fc36 fedora 1.1 M google-droid-sans-fonts noarch 20200215-12.fc36 fedora 2.7 M google-noto-fonts-common noarch 20201206-8.fc36 fedora 15 k google-noto-sans-vf-fonts noarch 20201206-8.fc36 fedora 492 k graphite2 x86_64 1.3.14-9.fc36 fedora 95 k graphite2-devel x86_64 1.3.14-9.fc36 fedora 21 k groff-base x86_64 1.22.4-9.fc36 fedora 1.0 M guile22 x86_64 2.2.7-5.fc36 fedora 6.4 M harfbuzz x86_64 3.3.1-1.fc36 fedora 721 k harfbuzz-devel x86_64 3.3.1-1.fc36 fedora 342 k harfbuzz-icu x86_64 3.3.1-1.fc36 fedora 15 k javapackages-filesystem noarch 6.0.0-7.fc36 copr_base 12 k jbig2dec-libs x86_64 0.19-6.fc36 fedora 74 k jbigkit-libs x86_64 2.1-23.fc36 fedora 53 k kernel-headers x86_64 5.17.0-0.rc2.git0.1.fc36 fedora 1.3 M langpacks-core-font-en noarch 3.0-21.fc36 fedora 9.7 k lcms2 x86_64 2.13-1.fc36 fedora 171 k libICE x86_64 1.0.10-8.fc36 fedora 71 k libSM x86_64 1.2.3-10.fc36 fedora 42 k libX11 x86_64 1.7.3.1-2.fc36 fedora 648 k libX11-common noarch 1.7.3.1-2.fc36 fedora 152 k libX11-xcb x86_64 1.7.3.1-2.fc36 fedora 12 k libXau x86_64 1.0.9-8.fc36 fedora 30 k libXau-devel x86_64 1.0.9-8.fc36 fedora 13 k libXaw x86_64 1.0.14-2.fc36 fedora 203 k libXext x86_64 1.3.4-8.fc36 fedora 39 k libXext-devel x86_64 1.3.4-8.fc36 fedora 72 k libXft x86_64 2.3.4-2.fc36 fedora 63 k libXft-devel x86_64 2.3.4-2.fc36 fedora 18 k libXi x86_64 1.8-2.fc36 fedora 40 k libXmu x86_64 1.1.3-8.fc36 fedora 75 k libXpm x86_64 3.5.13-7.fc36 fedora 58 k libXrender x86_64 0.9.10-16.fc36 fedora 27 k libXrender-devel x86_64 0.9.10-16.fc36 fedora 16 k libXt x86_64 1.2.1-2.fc36 fedora 181 k libblkid-devel x86_64 2.38-0.2.fc36 fedora 17 k libdatrie x86_64 0.2.13-3.fc36 fedora 32 k libdatrie-devel x86_64 0.2.13-3.fc36 fedora 132 k libffi-devel x86_64 3.4.2-8.fc36 fedora 29 k libgfortran x86_64 12.0.1-0.5.fc36 fedora 867 k libgs x86_64 9.55.0-3.fc36 fedora 3.5 M libicu x86_64 69.1-5.fc36 fedora 9.8 M libijs x86_64 0.35-15.fc36 fedora 29 k libjpeg-turbo x86_64 2.1.2-2.fc36 fedora 182 k libmount-devel x86_64 2.38-0.2.fc36 fedora 18 k libmpc x86_64 1.2.1-4.fc36 fedora 61 k libpaper x86_64 1.1.28-4.fc36 fedora 41 k libpng x86_64 2:1.6.37-12.fc36 fedora 119 k libquadmath x86_64 12.0.1-0.5.fc36 fedora 183 k libquadmath-devel x86_64 12.0.1-0.5.fc36 fedora 25 k libselinux-devel x86_64 3.3-4.fc36 fedora 113 k libsepol-devel x86_64 3.3-3.fc36 fedora 40 k libstdc++-devel x86_64 12.0.1-0.5.fc36 fedora 2.3 M libthai x86_64 0.1.29-2.fc36 fedora 213 k libthai-devel x86_64 0.1.29-2.fc36 fedora 118 k libtiff x86_64 4.3.0-3.fc36 fedora 194 k libtool-ltdl x86_64 2.4.6-47.fc36 fedora 36 k libwebp x86_64 1.2.2-2.fc36 copr_base 286 k libxcb x86_64 1.13.1-9.fc36 fedora 229 k libxcb-devel x86_64 1.13.1-9.fc36 fedora 1.0 M libxcrypt-devel x86_64 4.4.28-1.fc36 fedora 29 k libxml2-devel x86_64 2.9.12-7.fc36 fedora 862 k libxslt x86_64 1.1.34-7.fc36 fedora 242 k lksctp-tools x86_64 1.0.18-12.fc36 fedora 91 k lua x86_64 5.4.4-1.fc36 fedora 189 k lua-posix x86_64 35.0-5.fc36 fedora 128 k m4 x86_64 1.4.19-3.fc36 fedora 296 k mailcap noarch 2.1.53-3.fc36 fedora 33 k make x86_64 1:4.3-7.fc36 fedora 535 k mpdecimal x86_64 2.5.1-3.fc36 fedora 102 k ncurses x86_64 6.2-9.20210508.fc36 fedora 400 k ncurses-c++-libs x86_64 6.2-9.20210508.fc36 fedora 37 k nettle x86_64 3.7.3-3.fc36 fedora 399 k nspr x86_64 4.32.0-4.fc36 fedora 138 k nss x86_64 3.73.0-1.fc36 fedora 689 k nss-softokn x86_64 3.73.0-1.fc36 fedora 378 k nss-softokn-freebl x86_64 3.73.0-1.fc36 fedora 324 k nss-sysinit x86_64 3.73.0-1.fc36 fedora 21 k nss-util x86_64 3.73.0-1.fc36 fedora 89 k openblas x86_64 0.3.19-3.fc36 fedora 34 k openblas-openmp x86_64 0.3.19-3.fc36 fedora 5.0 M openblas-openmp64 x86_64 0.3.19-3.fc36 fedora 4.9 M openjpeg2 x86_64 2.4.0-5.fc36 fedora 164 k pango x86_64 1.50.3-2.fc36 fedora 339 k pcre-cpp x86_64 8.45-1.fc36.1 fedora 26 k pcre-utf16 x86_64 8.45-1.fc36.1 fedora 187 k pcre-utf32 x86_64 8.45-1.fc36.1 fedora 177 k pcre2-utf16 x86_64 10.39-1.fc36.1 fedora 212 k pcre2-utf32 x86_64 10.39-1.fc36.1 fedora 198 k perl-Authen-SASL noarch 2.16-26.fc36 fedora 52 k perl-AutoLoader noarch 5.74-484.fc36 fedora 28 k perl-B x86_64 1.82-484.fc36 fedora 188 k perl-B-Hooks-EndOfScope noarch 0.25-2.fc36 fedora 38 k perl-Business-ISBN noarch 3.007-2.fc36 fedora 33 k perl-Business-ISBN-Data noarch 20210112.006-4.fc36 fedora 35 k perl-Business-ISMN noarch 1.202-4.fc36 fedora 25 k perl-Business-ISSN noarch 1.004-7.fc36 fedora 18 k perl-Carp noarch 1.52-479.fc36 fedora 29 k perl-Class-Accessor noarch 0.51-14.fc36 fedora 29 k perl-Class-Data-Inheritable noarch 0.09-2.fc36 fedora 13 k perl-Class-Inspector noarch 1.36-9.fc36 fedora 31 k perl-Class-Method-Modifiers noarch 2.13-10.fc36 fedora 44 k perl-Class-Singleton noarch 1.6-5.fc36 fedora 27 k perl-Class-Struct noarch 0.66-484.fc36 fedora 29 k perl-Clone x86_64 0.45-7.fc36 fedora 22 k perl-Compress-Raw-Bzip2 x86_64 2.101-480.fc36 fedora 34 k perl-Compress-Raw-Zlib x86_64 2.101-480.fc36 fedora 60 k perl-Convert-ASN1 noarch 0.33-2.fc36 fedora 59 k perl-Data-Compare noarch 1.27-8.fc36 fedora 35 k perl-Data-Dump noarch 1.25-3.fc36 fedora 33 k perl-Data-Dumper x86_64 2.183-3.fc36 fedora 56 k perl-Data-OptList noarch 0.112-3.fc36 fedora 27 k perl-Data-Uniqid noarch 0.12-27.fc36 fedora 12 k perl-Date-ISO8601 noarch 0.005-14.fc36 fedora 20 k perl-Date-Manip noarch 6.86-2.fc36 fedora 1.0 M perl-DateTime x86_64 2:1.55-2.fc36 fedora 129 k perl-DateTime-Calendar-Julian noarch 0.107-1.fc36 fedora 23 k perl-DateTime-Format-Builder noarch 0.8300-6.fc36 fedora 85 k perl-DateTime-Format-Strptime noarch 1:1.79-4.fc36 fedora 42 k perl-DateTime-Locale noarch 1.33-2.fc36 fedora 2.9 M perl-DateTime-TimeZone noarch 2.51-2.fc36 fedora 358 k perl-DateTime-TimeZone-SystemV noarch 0.010-15.fc36 fedora 24 k perl-DateTime-TimeZone-Tzfile noarch 0.011-15.fc36 fedora 20 k perl-Devel-CallChecker x86_64 0.008-15.fc36 fedora 23 k perl-Devel-Caller x86_64 2.06-27.fc36 fedora 19 k perl-Devel-GlobalDestruction noarch 0.14-17.fc36 fedora 17 k perl-Devel-LexAlias x86_64 0.05-28.fc36 fedora 16 k perl-Devel-StackTrace noarch 1:2.04-11.fc36 fedora 31 k perl-Digest noarch 1.20-2.fc36 fedora 25 k perl-Digest-HMAC noarch 1.04-4.fc36 fedora 23 k perl-Digest-MD5 x86_64 2.58-479.fc36 fedora 36 k perl-Digest-SHA x86_64 1:6.02-480.fc36 fedora 62 k perl-Dist-CheckConflicts noarch 0.11-24.fc36 fedora 24 k perl-DynaLoader x86_64 1.50-484.fc36 fedora 33 k perl-DynaLoader-Functions noarch 0.003-14.fc36 fedora 19 k perl-Email-Date-Format noarch 1.005-21.fc36 fedora 18 k perl-Encode x86_64 4:3.16-484.fc36 fedora 1.7 M perl-Encode-Locale noarch 1.05-22.fc36 fedora 19 k perl-Errno x86_64 1.33-484.fc36 fedora 22 k perl-Eval-Closure noarch 0.14-17.fc36 fedora 24 k perl-Exception-Class noarch 1.45-4.fc36 fedora 44 k perl-Exporter noarch 5.76-480.fc36 fedora 31 k perl-ExtUtils-MM-Utils noarch 2:7.64-2.fc36 fedora 12 k perl-Fcntl x86_64 1.14-484.fc36 fedora 28 k perl-File-Basename noarch 2.85-484.fc36 fedora 24 k perl-File-Compare noarch 1.100.600-484.fc36 fedora 20 k perl-File-Copy noarch 2.35-484.fc36 fedora 27 k perl-File-Find noarch 1.39-484.fc36 fedora 33 k perl-File-Find-Rule noarch 0.34-20.fc36 fedora 33 k perl-File-Listing noarch 6.14-5.fc36 fedora 25 k perl-File-Path noarch 2.18-479.fc36 fedora 35 k perl-File-ShareDir noarch 1.118-5.fc36 fedora 30 k perl-File-Slurper noarch 0.013-2.fc36 fedora 21 k perl-File-Temp noarch 1:0.231.100-479.fc36 fedora 59 k perl-File-stat noarch 1.09-484.fc36 fedora 24 k perl-FileHandle noarch 2.03-484.fc36 fedora 23 k perl-Filter x86_64 2:1.60-6.fc36 fedora 81 k perl-FindBin noarch 1.52-484.fc36 fedora 21 k perl-GSSAPI x86_64 0.28-38.fc36 fedora 60 k perl-Getopt-Long noarch 1:2.52-479.fc36 fedora 60 k perl-Getopt-Std noarch 1.13-484.fc36 fedora 23 k perl-HTML-Parser x86_64 3.76-4.fc36 fedora 119 k perl-HTML-Tagset noarch 3.20-49.fc36 fedora 19 k perl-HTTP-Cookies noarch 6.10-5.fc36 fedora 38 k perl-HTTP-Date noarch 6.05-8.fc36 fedora 24 k perl-HTTP-Message noarch 6.36-2.fc36 fedora 97 k perl-HTTP-Negotiate noarch 6.01-31.fc36 fedora 20 k perl-HTTP-Tiny noarch 0.080-2.fc36 fedora 55 k perl-Hash-Util-FieldHash x86_64 1.21-484.fc36 fedora 45 k perl-I18N-LangTags noarch 0.45-484.fc36 fedora 61 k perl-I18N-Langinfo x86_64 0.19-484.fc36 fedora 30 k perl-IO x86_64 1.46-484.fc36 fedora 94 k perl-IO-Compress noarch 2.102-480.fc36 fedora 256 k perl-IO-HTML noarch 1.004-5.fc36 fedora 28 k perl-IO-Socket-IP noarch 0.41-480.fc36 fedora 42 k perl-IO-Socket-SSL noarch 2.074-2.fc36 fedora 218 k perl-IO-String noarch 1.08-44.fc36 fedora 17 k perl-IPC-Cmd noarch 2:1.04-480.fc36 fedora 40 k perl-IPC-Open3 noarch 1.21-484.fc36 fedora 30 k perl-IPC-Run3 noarch 0.048-24.fc36 fedora 39 k perl-IPC-SysV x86_64 2.09-480.fc36 fedora 42 k perl-JSON noarch 4.05-2.fc36 fedora 95 k perl-LDAP noarch 1:0.68-6.fc36 fedora 377 k perl-LWP-MediaTypes noarch 6.04-10.fc36 fedora 33 k 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9:svn53628-48.fc36 fedora 34 k texlive-sauerj noarch 9:svn15878.0-48.fc36 fedora 22 k texlive-section noarch 9:svn20180.0-48.fc36 fedora 25 k texlive-seminar noarch 9:svn34011.1.62-48.fc36 fedora 49 k texlive-sepnum noarch 9:svn20186.2.0-48.fc36 fedora 19 k texlive-setspace noarch 9:svn24881.6.7a-48.fc36 fedora 20 k texlive-showexpl noarch 9:svn57414-48.fc36 fedora 20 k texlive-soul noarch 9:svn56495-48.fc36 fedora 22 k texlive-stringenc noarch 9:svn52982-48.fc36 fedora 696 k texlive-subfig noarch 9:svn15878.1.3-48.fc36 fedora 23 k texlive-symbol noarch 9:svn31835.0-48.fc36 fedora 56 k texlive-tex x86_64 9:20210325-47.fc36 fedora 212 k texlive-tex-gyre noarch 9:svn48058-48.fc36 fedora 7.8 M texlive-tex-gyre-math noarch 9:svn41264-48.fc36 fedora 1.4 M texlive-tex-ini-files noarch 9:svn40533-48.fc36 fedora 17 k texlive-texlive-common-doc noarch 9:svn54176-48.fc36 fedora 107 k texlive-texlive-en noarch 9:20210325-47.fc36 fedora 1.9 M texlive-texlive-msg-translations noarch 9:svn59096-48.fc36 fedora 159 k texlive-texlive-scripts noarch 9:20210325-47.fc36 fedora 107 k texlive-texlive-scripts-extra noarch 9:20210325-47.fc36 fedora 56 k texlive-texlive.infra noarch 9:20210325-47.fc36 fedora 283 k texlive-textcase noarch 9:svn52092-48.fc36 fedora 17 k texlive-thumbpdf noarch 9:20210325-47.fc36 fedora 42 k texlive-times noarch 9:svn35058.0-48.fc36 fedora 344 k texlive-tipa noarch 9:svn29349.1.3-48.fc36 fedora 2.8 M texlive-titlesec noarch 9:svn52413-48.fc36 fedora 36 k texlive-tools noarch 9:svn56514-48.fc36 fedora 66 k texlive-translator noarch 9:svn56052-48.fc36 fedora 272 k texlive-transparent noarch 9:svn52981-48.fc36 fedora 278 k texlive-txfonts noarch 9:svn15878.0-48.fc36 fedora 769 k texlive-typehtml noarch 9:svn17134.0-48.fc36 fedora 23 k texlive-ucharcat noarch 9:svn38907-48.fc36 fedora 17 k texlive-ucs noarch 9:svn35853.2.2-48.fc36 fedora 348 k texlive-underscore noarch 9:svn18261.0-48.fc36 fedora 20 k texlive-unicode-data noarch 9:svn56768-48.fc36 fedora 357 k texlive-unicode-math noarch 9:svn56594-48.fc36 fedora 65 k texlive-uniquecounter noarch 9:svn53162-48.fc36 fedora 302 k texlive-url noarch 9:svn32528.3.4-48.fc36 fedora 21 k texlive-utopia noarch 9:svn15878.0-48.fc36 fedora 231 k texlive-varwidth noarch 9:svn24104.0.92-48.fc36 fedora 20 k texlive-wasy noarch 9:svn53533-48.fc36 fedora 41 k texlive-wasy-type1 noarch 9:svn53534-48.fc36 fedora 270 k texlive-wasysym noarch 9:svn54080-48.fc36 fedora 20 k texlive-xcolor noarch 9:svn41044-48.fc36 fedora 34 k texlive-xdvi x86_64 9:20210325-47.fc36 fedora 357 k texlive-xetex x86_64 9:20210325-47.fc36 fedora 1.3 M texlive-xetexconfig noarch 9:svn45845-48.fc36 fedora 13 k texlive-xifthen noarch 9:svn38929-48.fc36 fedora 18 k texlive-xkeyval noarch 9:svn57006-48.fc36 fedora 29 k texlive-xltxtra noarch 9:svn56594-48.fc36 fedora 19 k texlive-xpatch noarch 9:svn54563-48.fc36 fedora 20 k texlive-xstring noarch 9:svn49946-48.fc36 fedora 27 k texlive-xunicode noarch 9:svn30466.0.981-48.fc36 fedora 46 k texlive-zapfchan noarch 9:svn31835.0-48.fc36 fedora 106 k texlive-zapfding noarch 9:svn31835.0-48.fc36 fedora 66 k texlive-zref noarch 9:svn56611-48.fc36 fedora 668 k tk x86_64 1:8.6.12-2.fc36 fedora 1.6 M tre x86_64 0.8.0-35.20140228gitc2f5d13.fc36 fedora 42 k tre-common noarch 0.8.0-35.20140228gitc2f5d13.fc36 fedora 31 k tzdata-java noarch 2021e-2.fc36 fedora 155 k urw-base35-bookman-fonts noarch 20200910-10.fc36 fedora 847 k urw-base35-c059-fonts noarch 20200910-10.fc36 fedora 875 k urw-base35-d050000l-fonts noarch 20200910-10.fc36 fedora 76 k urw-base35-fonts noarch 20200910-10.fc36 fedora 10 k urw-base35-fonts-common noarch 20200910-10.fc36 fedora 21 k urw-base35-gothic-fonts noarch 20200910-10.fc36 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-10.fc36 fedora 795 k urw-base35-nimbus-roman-fonts noarch 20200910-10.fc36 fedora 857 k urw-base35-nimbus-sans-fonts noarch 20200910-10.fc36 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-10.fc36 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-10.fc36 fedora 42 k urw-base35-z003-fonts noarch 20200910-10.fc36 fedora 276 k valgrind x86_64 1:3.18.1-9.fc36 fedora 4.8 M xml-common noarch 0.6.3-58.fc36 fedora 31 k xorg-x11-proto-devel noarch 2021.5-2.fc36 fedora 262 k zziplib x86_64 0.13.71-6.fc36 fedora 85 k Transaction Summary ================================================================================================= Install 706 Packages Total download size: 434 M Installed size: 1.3 G Downloading Packages: (1/706): crypto-policies-scripts-20220203-2.git 1.7 MB/s | 82 kB 00:00 (2/706): javapackages-filesystem-6.0.0-7.fc36.n 257 kB/s | 12 kB 00:00 (3/706): libwebp-1.2.2-2.fc36.x86_64.rpm 11 MB/s | 286 kB 00:00 (4/706): adobe-mappings-cmap-deprecated-2019073 395 kB/s | 113 kB 00:00 (5/706): adobe-mappings-cmap-20190730-3.fc36.no 5.2 MB/s | 2.1 MB 00:00 (6/706): alsa-lib-1.2.6.1-4.fc36.x86_64.rpm 17 MB/s | 499 kB 00:00 (7/706): adobe-mappings-pdf-20180407-10.fc36.no 5.0 MB/s | 627 kB 00:00 (8/706): annobin-docs-10.51-2.fc36.noarch.rpm 4.3 MB/s | 89 kB 00:00 (9/706): java-17-openjdk-headless-17.0.2.0.8-66 68 MB/s | 40 MB 00:00 (10/706): annobin-plugin-gcc-10.51-2.fc36.x86_6 7.5 MB/s | 815 kB 00:00 (11/706): autoconf-2.71-2.fc36.noarch.rpm 7.8 MB/s | 718 kB 00:00 (12/706): avahi-libs-0.8-15.fc36.x86_64.rpm 3.9 MB/s | 68 kB 00:00 (13/706): biber-2.17-2.fc36.noarch.rpm 14 MB/s | 302 kB 00:00 (14/706): brotli-1.0.9-7.fc36.x86_64.rpm 14 MB/s | 315 kB 00:00 (15/706): brotli-devel-1.0.9-7.fc36.x86_64.rpm 1.8 MB/s | 31 kB 00:00 (16/706): bzip2-devel-1.0.8-11.fc36.x86_64.rpm 10 MB/s | 214 kB 00:00 (17/706): cairo-1.17.4-5.fc36.x86_64.rpm 26 MB/s | 670 kB 00:00 (18/706): cairo-devel-1.17.4-5.fc36.x86_64.rpm 9.2 MB/s | 191 kB 00:00 (19/706): cmake-filesystem-3.22.2-1.fc36.x86_64 1.1 MB/s | 18 kB 00:00 (20/706): copy-jdk-configs-4.0-3.fc36.noarch.rp 1.6 MB/s | 27 kB 00:00 (21/706): cups-libs-2.4.0-3.fc36.x86_64.rpm 11 MB/s | 267 kB 00:00 (22/706): dbus-libs-1.13.20-3.fc36.x86_64.rpm 5.4 MB/s | 155 kB 00:00 (23/706): emacs-filesystem-27.2-9.fc35.noarch.r 277 kB/s | 9.0 kB 00:00 (24/706): expat-2.4.4-1.fc36.x86_64.rpm 2.9 MB/s | 108 kB 00:00 (25/706): cpp-12.0.1-0.5.fc36.x86_64.rpm 68 MB/s | 10 MB 00:00 (26/706): flexiblas-3.1.2-1.fc36.x86_64.rpm 1.8 MB/s | 32 kB 00:00 (27/706): flexiblas-devel-3.1.2-1.fc36.x86_64.r 6.0 MB/s | 107 kB 00:00 (28/706): flexiblas-netlib64-3.1.2-1.fc36.x86_6 53 MB/s | 2.9 MB 00:00 (29/706): flexiblas-netlib-3.1.2-1.fc36.x86_64. 33 MB/s | 3.0 MB 00:00 (30/706): flexiblas-openblas-openmp-3.1.2-1.fc3 923 kB/s | 17 kB 00:00 (31/706): flexiblas-openblas-openmp64-3.1.2-1.f 1.0 MB/s | 17 kB 00:00 (32/706): fontconfig-2.13.96-1.fc36.x86_64.rpm 14 MB/s | 276 kB 00:00 (33/706): fontconfig-devel-2.13.96-1.fc36.x86_6 7.1 MB/s | 128 kB 00:00 (34/706): fonts-filesystem-2.0.5-7.fc36.noarch. 545 kB/s | 9.0 kB 00:00 (35/706): freetype-2.11.1-2.fc36.x86_64.rpm 18 MB/s | 404 kB 00:00 (36/706): freetype-devel-2.11.1-2.fc36.x86_64.r 30 MB/s | 848 kB 00:00 (37/706): automake-1.16.5-2.fc36.noarch.rpm 1.6 MB/s | 673 kB 00:00 (38/706): fribidi-1.0.11-2.fc36.x86_64.rpm 3.0 MB/s | 52 kB 00:00 (39/706): fribidi-devel-1.0.11-2.fc36.x86_64.rp 1.4 MB/s | 25 kB 00:00 (40/706): gc-8.0.6-2.fc36.x86_64.rpm 5.5 MB/s | 103 kB 00:00 (41/706): gcc-c++-12.0.1-0.5.fc36.x86_64.rpm 41 MB/s | 13 MB 00:00 (42/706): gettext-0.21-9.fc36.x86_64.rpm 24 MB/s | 1.1 MB 00:00 (43/706): gettext-libs-0.21-9.fc36.x86_64.rpm 10 MB/s | 303 kB 00:00 (44/706): ghostscript-9.55.0-3.fc36.x86_64.rpm 1.7 MB/s | 38 kB 00:00 (45/706): ghostscript-tools-fonts-9.55.0-3.fc36 560 kB/s | 13 kB 00:00 (46/706): ghostscript-tools-printing-9.55.0-3.f 586 kB/s | 13 kB 00:00 (47/706): glib2-2.71.1-1.fc36.x86_64.rpm 29 MB/s | 2.7 MB 00:00 (48/706): glib2-devel-2.71.1-1.fc36.x86_64.rpm 12 MB/s | 485 kB 00:00 (49/706): glibc-devel-2.34.9000-38.fc36.x86_64. 4.6 MB/s | 163 kB 00:00 (50/706): glibc-headers-x86-2.34.9000-38.fc36.n 5.4 MB/s | 565 kB 00:00 (51/706): gnutls-3.7.3-2.fc36.x86_64.rpm 7.9 MB/s | 1.1 MB 00:00 (52/706): gcc-12.0.1-0.5.fc36.x86_64.rpm 36 MB/s | 33 MB 00:00 (53/706): gcc-gfortran-12.0.1-0.5.fc36.x86_64.r 13 MB/s | 12 MB 00:00 (54/706): google-noto-fonts-common-20201206-8.f 518 kB/s | 15 kB 00:00 (55/706): google-droid-sans-fonts-20200215-12.f 33 MB/s | 2.7 MB 00:00 (56/706): graphite2-1.3.14-9.fc36.x86_64.rpm 4.4 MB/s | 95 kB 00:00 (57/706): google-noto-sans-vf-fonts-20201206-8. 19 MB/s | 492 kB 00:00 (58/706): graphite2-devel-1.3.14-9.fc36.x86_64. 1.2 MB/s | 21 kB 00:00 (59/706): harfbuzz-3.3.1-1.fc36.x86_64.rpm 15 MB/s | 721 kB 00:00 (60/706): groff-base-1.22.4-9.fc36.x86_64.rpm 12 MB/s | 1.0 MB 00:00 (61/706): harfbuzz-devel-3.3.1-1.fc36.x86_64.rp 9.8 MB/s | 342 kB 00:00 (62/706): harfbuzz-icu-3.3.1-1.fc36.x86_64.rpm 602 kB/s | 15 kB 00:00 (63/706): jbig2dec-libs-0.19-6.fc36.x86_64.rpm 3.1 MB/s | 74 kB 00:00 (64/706): jbigkit-libs-2.1-23.fc36.x86_64.rpm 2.2 MB/s | 53 kB 00:00 (65/706): langpacks-core-font-en-3.0-21.fc36.no 352 kB/s | 9.7 kB 00:00 (66/706): guile22-2.2.7-5.fc36.x86_64.rpm 37 MB/s | 6.4 MB 00:00 (67/706): kernel-headers-5.17.0-0.rc2.git0.1.fc 23 MB/s | 1.3 MB 00:00 (68/706): lcms2-2.13-1.fc36.x86_64.rpm 6.6 MB/s | 171 kB 00:00 (69/706): less-590-3.fc36.x86_64.rpm 8.1 MB/s | 160 kB 00:00 (70/706): libICE-1.0.10-8.fc36.x86_64.rpm 3.9 MB/s | 71 kB 00:00 (71/706): libICE-devel-1.0.10-8.fc36.x86_64.rpm 2.3 MB/s | 46 kB 00:00 (72/706): libSM-1.2.3-10.fc36.x86_64.rpm 2.4 MB/s | 42 kB 00:00 (73/706): libSM-devel-1.2.3-10.fc36.x86_64.rpm 682 kB/s | 12 kB 00:00 (74/706): libX11-common-1.7.3.1-2.fc36.noarch.r 6.9 MB/s | 152 kB 00:00 (75/706): libX11-devel-1.7.3.1-2.fc36.x86_64.rp 20 MB/s | 940 kB 00:00 (76/706): libX11-xcb-1.7.3.1-2.fc36.x86_64.rpm 459 kB/s | 12 kB 00:00 (77/706): libX11-1.7.3.1-2.fc36.x86_64.rpm 11 MB/s | 648 kB 00:00 (78/706): libXau-1.0.9-8.fc36.x86_64.rpm 1.8 MB/s | 30 kB 00:00 (79/706): libXau-devel-1.0.9-8.fc36.x86_64.rpm 813 kB/s | 13 kB 00:00 (80/706): libXaw-1.0.14-2.fc36.x86_64.rpm 7.1 MB/s | 203 kB 00:00 (81/706): libXext-1.3.4-8.fc36.x86_64.rpm 2.0 MB/s | 39 kB 00:00 (82/706): libXext-devel-1.3.4-8.fc36.x86_64.rpm 3.6 MB/s | 72 kB 00:00 (83/706): libXft-2.3.4-2.fc36.x86_64.rpm 3.3 MB/s | 63 kB 00:00 (84/706): libXft-devel-2.3.4-2.fc36.x86_64.rpm 1.1 MB/s | 18 kB 00:00 (85/706): libXi-1.8-2.fc36.x86_64.rpm 2.2 MB/s | 40 kB 00:00 (86/706): libXmu-1.1.3-8.fc36.x86_64.rpm 3.5 MB/s | 75 kB 00:00 (87/706): libXpm-3.5.13-7.fc36.x86_64.rpm 3.2 MB/s | 58 kB 00:00 (88/706): libXmu-devel-1.1.3-8.fc36.x86_64.rpm 747 kB/s | 22 kB 00:00 (89/706): libXrender-0.9.10-16.fc36.x86_64.rpm 1.4 MB/s | 27 kB 00:00 (90/706): libXrender-devel-0.9.10-16.fc36.x86_6 841 kB/s | 16 kB 00:00 (91/706): libXt-1.2.1-2.fc36.x86_64.rpm 7.7 MB/s | 181 kB 00:00 (92/706): libblkid-devel-2.38-0.2.fc36.x86_64.r 916 kB/s | 17 kB 00:00 (93/706): libdatrie-0.2.13-3.fc36.x86_64.rpm 1.3 MB/s | 32 kB 00:00 (94/706): libXt-devel-1.2.1-2.fc36.x86_64.rpm 8.6 MB/s | 408 kB 00:00 (95/706): libcurl-devel-7.81.0-2.fc36.x86_64.rp 22 MB/s | 876 kB 00:00 (96/706): libdatrie-devel-0.2.13-3.fc36.x86_64. 6.8 MB/s | 132 kB 00:00 (97/706): libffi-devel-3.4.2-8.fc36.x86_64.rpm 1.6 MB/s | 29 kB 00:00 (98/706): libgfortran-12.0.1-0.5.fc36.x86_64.rp 23 MB/s | 867 kB 00:00 (99/706): libicu-devel-69.1-5.fc36.x86_64.rpm 21 MB/s | 838 kB 00:00 (100/706): libijs-0.35-15.fc36.x86_64.rpm 1.4 MB/s | 29 kB 00:00 (101/706): libgs-9.55.0-3.fc36.x86_64.rpm 37 MB/s | 3.5 MB 00:00 (102/706): libjpeg-turbo-2.1.2-2.fc36.x86_64.rp 8.8 MB/s | 182 kB 00:00 (103/706): libjpeg-turbo-devel-2.1.2-2.fc36.x86 5.1 MB/s | 99 kB 00:00 (104/706): libmount-devel-2.38-0.2.fc36.x86_64. 1.0 MB/s | 18 kB 00:00 (105/706): libmpc-1.2.1-4.fc36.x86_64.rpm 3.4 MB/s | 61 kB 00:00 (106/706): libpaper-1.1.28-4.fc36.x86_64.rpm 2.3 MB/s | 41 kB 00:00 (107/706): libpng-1.6.37-12.fc36.x86_64.rpm 6.2 MB/s | 119 kB 00:00 (108/706): libpng-devel-1.6.37-12.fc36.x86_64.r 12 MB/s | 290 kB 00:00 (109/706): libquadmath-12.0.1-0.5.fc36.x86_64.r 8.2 MB/s | 183 kB 00:00 (110/706): libquadmath-devel-12.0.1-0.5.fc36.x8 1.4 MB/s | 25 kB 00:00 (111/706): libselinux-devel-3.3-4.fc36.x86_64.r 6.0 MB/s | 113 kB 00:00 (112/706): libsepol-devel-3.3-3.fc36.x86_64.rpm 2.3 MB/s | 40 kB 00:00 (113/706): libthai-0.1.29-2.fc36.x86_64.rpm 8.9 MB/s | 213 kB 00:00 (114/706): libthai-devel-0.1.29-2.fc36.x86_64.r 5.4 MB/s | 118 kB 00:00 (115/706): libstdc++-devel-12.0.1-0.5.fc36.x86_ 35 MB/s | 2.3 MB 00:00 (116/706): libtiff-4.3.0-3.fc36.x86_64.rpm 9.5 MB/s | 194 kB 00:00 (117/706): libtiff-devel-4.3.0-3.fc36.x86_64.rp 17 MB/s | 505 kB 00:00 (118/706): libtool-2.4.6-47.fc36.x86_64.rpm 18 MB/s | 578 kB 00:00 (119/706): libtool-ltdl-2.4.6-47.fc36.x86_64.rp 2.1 MB/s | 36 kB 00:00 (120/706): libxcb-1.13.1-9.fc36.x86_64.rpm 10 MB/s | 229 kB 00:00 (121/706): libxcb-devel-1.13.1-9.fc36.x86_64.rp 27 MB/s | 1.0 MB 00:00 (122/706): libxcrypt-devel-4.4.28-1.fc36.x86_64 1.4 MB/s | 29 kB 00:00 (123/706): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: texlive-base-9:20210325-47.fc36.x86_64 1/1 Running scriptlet: copy-jdk-configs-4.0-3.fc36.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.2.0.8-666.fc36.x86_6 1/1 Preparing : 1/1 Running scriptlet: texlive-base-9:20210325-47.fc36.x86_64 1/706 Installing : texlive-base-9:20210325-47.fc36.x86_64 1/706 Installing : texlive-lib-9:20210325-47.fc36.x86_64 2/706 Installing : xorg-x11-proto-devel-2021.5-2.fc36.noarch 3/706 Installing : libpng-2:1.6.37-12.fc36.x86_64 4/706 Installing : nspr-4.32.0-4.fc36.x86_64 5/706 Installing : zlib-devel-1.2.11-31.fc36.x86_64 6/706 Installing : libquadmath-12.0.1-0.5.fc36.x86_64 7/706 Installing : libgfortran-12.0.1-0.5.fc36.x86_64 8/706 Installing : libjpeg-turbo-2.1.2-2.fc36.x86_64 9/706 Installing : flexiblas-3.1.2-1.fc36.x86_64 10/706 Installing : nss-util-3.73.0-1.fc36.x86_64 11/706 Installing : libmpc-1.2.1-4.fc36.x86_64 12/706 Installing : fonts-filesystem-1:2.0.5-7.fc36.noarch 13/706 Installing : 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: m4-1.4.19-3.fc36.x86_64 129/706 Verifying : mailcap-2.1.53-3.fc36.noarch 130/706 Verifying : make-1:4.3-7.fc36.x86_64 131/706 Verifying : mpdecimal-2.5.1-3.fc36.x86_64 132/706 Verifying : ncurses-6.2-9.20210508.fc36.x86_64 133/706 Verifying : ncurses-c++-libs-6.2-9.20210508.fc36.x86_64 134/706 Verifying : ncurses-devel-6.2-9.20210508.fc36.x86_64 135/706 Verifying : nettle-3.7.3-3.fc36.x86_64 136/706 Verifying : nspr-4.32.0-4.fc36.x86_64 137/706 Verifying : nss-3.73.0-1.fc36.x86_64 138/706 Verifying : nss-softokn-3.73.0-1.fc36.x86_64 139/706 Verifying : nss-softokn-freebl-3.73.0-1.fc36.x86_64 140/706 Verifying : nss-sysinit-3.73.0-1.fc36.x86_64 141/706 Verifying : nss-util-3.73.0-1.fc36.x86_64 142/706 Verifying : openblas-0.3.19-3.fc36.x86_64 143/706 Verifying : openblas-openmp-0.3.19-3.fc36.x86_64 144/706 Verifying : openblas-openmp64-0.3.19-3.fc36.x86_64 145/706 Verifying : openjpeg2-2.4.0-5.fc36.x86_64 146/706 Verifying : pango-1.50.3-2.fc36.x86_64 147/706 Verifying : 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: perl-Class-Data-Inheritable-0.09-2.fc36.noarch 166/706 Verifying : perl-Class-Inspector-1.36-9.fc36.noarch 167/706 Verifying : perl-Class-Method-Modifiers-2.13-10.fc36.noarch 168/706 Verifying : perl-Class-Singleton-1.6-5.fc36.noarch 169/706 Verifying : perl-Class-Struct-0.66-484.fc36.noarch 170/706 Verifying : perl-Clone-0.45-7.fc36.x86_64 171/706 Verifying : perl-Compress-Raw-Bzip2-2.101-480.fc36.x86_64 172/706 Verifying : perl-Compress-Raw-Zlib-2.101-480.fc36.x86_64 173/706 Verifying : perl-Convert-ASN1-0.33-2.fc36.noarch 174/706 Verifying : perl-Data-Compare-1.27-8.fc36.noarch 175/706 Verifying : perl-Data-Dump-1.25-3.fc36.noarch 176/706 Verifying : perl-Data-Dumper-2.183-3.fc36.x86_64 177/706 Verifying : perl-Data-OptList-0.112-3.fc36.noarch 178/706 Verifying : perl-Data-Uniqid-0.12-27.fc36.noarch 179/706 Verifying : perl-Date-ISO8601-0.005-14.fc36.noarch 180/706 Verifying : perl-Date-Manip-6.86-2.fc36.noarch 181/706 Verifying : perl-DateTime-2:1.55-2.fc36.x86_64 182/706 Verifying : perl-DateTime-Calendar-Julian-0.107-1.fc36.noarc 183/706 Verifying : perl-DateTime-Format-Builder-0.8300-6.fc36.noarc 184/706 Verifying : perl-DateTime-Format-Strptime-1:1.79-4.fc36.noar 185/706 Verifying : perl-DateTime-Locale-1.33-2.fc36.noarch 186/706 Verifying : perl-DateTime-TimeZone-2.51-2.fc36.noarch 187/706 Verifying : perl-DateTime-TimeZone-SystemV-0.010-15.fc36.noa 188/706 Verifying : perl-DateTime-TimeZone-Tzfile-0.011-15.fc36.noar 189/706 Verifying : perl-Devel-CallChecker-0.008-15.fc36.x86_64 190/706 Verifying : perl-Devel-Caller-2.06-27.fc36.x86_64 191/706 Verifying : perl-Devel-GlobalDestruction-0.14-17.fc36.noarch 192/706 Verifying : perl-Devel-LexAlias-0.05-28.fc36.x86_64 193/706 Verifying : perl-Devel-StackTrace-1:2.04-11.fc36.noarch 194/706 Verifying : perl-Digest-1.20-2.fc36.noarch 195/706 Verifying : perl-Digest-HMAC-1.04-4.fc36.noarch 196/706 Verifying : perl-Digest-MD5-2.58-479.fc36.x86_64 197/706 Verifying : perl-Digest-SHA-1:6.02-480.fc36.x86_64 198/706 Verifying : perl-Dist-CheckConflicts-0.11-24.fc36.noarch 199/706 Verifying : perl-DynaLoader-1.50-484.fc36.x86_64 200/706 Verifying : perl-DynaLoader-Functions-0.003-14.fc36.noarch 201/706 Verifying : perl-Email-Date-Format-1.005-21.fc36.noarch 202/706 Verifying : perl-Encode-4:3.16-484.fc36.x86_64 203/706 Verifying : perl-Encode-Locale-1.05-22.fc36.noarch 204/706 Verifying : perl-Errno-1.33-484.fc36.x86_64 205/706 Verifying : perl-Eval-Closure-0.14-17.fc36.noarch 206/706 Verifying : perl-Exception-Class-1.45-4.fc36.noarch 207/706 Verifying : perl-Exporter-5.76-480.fc36.noarch 208/706 Verifying : perl-ExtUtils-MM-Utils-2:7.64-2.fc36.noarch 209/706 Verifying : perl-Fcntl-1.14-484.fc36.x86_64 210/706 Verifying : perl-File-Basename-2.85-484.fc36.noarch 211/706 Verifying : perl-File-Compare-1.100.600-484.fc36.noarch 212/706 Verifying : perl-File-Copy-2.35-484.fc36.noarch 213/706 Verifying : perl-File-Find-1.39-484.fc36.noarch 214/706 Verifying : perl-File-Find-Rule-0.34-20.fc36.noarch 215/706 Verifying : perl-File-Listing-6.14-5.fc36.noarch 216/706 Verifying : perl-File-Path-2.18-479.fc36.noarch 217/706 Verifying : perl-File-ShareDir-1.118-5.fc36.noarch 218/706 Verifying : perl-File-Slurper-0.013-2.fc36.noarch 219/706 Verifying : perl-File-Temp-1:0.231.100-479.fc36.noarch 220/706 Verifying : perl-File-stat-1.09-484.fc36.noarch 221/706 Verifying : perl-FileHandle-2.03-484.fc36.noarch 222/706 Verifying : perl-Filter-2:1.60-6.fc36.x86_64 223/706 Verifying : perl-FindBin-1.52-484.fc36.noarch 224/706 Verifying : perl-GSSAPI-0.28-38.fc36.x86_64 225/706 Verifying : perl-Getopt-Long-1:2.52-479.fc36.noarch 226/706 Verifying : perl-Getopt-Std-1.13-484.fc36.noarch 227/706 Verifying : perl-HTML-Parser-3.76-4.fc36.x86_64 228/706 Verifying : perl-HTML-Tagset-3.20-49.fc36.noarch 229/706 Verifying : perl-HTTP-Cookies-6.10-5.fc36.noarch 230/706 Verifying : perl-HTTP-Date-6.05-8.fc36.noarch 231/706 Verifying : perl-HTTP-Message-6.36-2.fc36.noarch 232/706 Verifying : perl-HTTP-Negotiate-6.01-31.fc36.noarch 233/706 Verifying : perl-HTTP-Tiny-0.080-2.fc36.noarch 234/706 Verifying : perl-Hash-Util-FieldHash-1.21-484.fc36.x86_64 235/706 Verifying : perl-I18N-LangTags-0.45-484.fc36.noarch 236/706 Verifying : perl-I18N-Langinfo-0.19-484.fc36.x86_64 237/706 Verifying : perl-IO-1.46-484.fc36.x86_64 238/706 Verifying : perl-IO-Compress-2.102-480.fc36.noarch 239/706 Verifying : perl-IO-HTML-1.004-5.fc36.noarch 240/706 Verifying : perl-IO-Socket-IP-0.41-480.fc36.noarch 241/706 Verifying : perl-IO-Socket-SSL-2.074-2.fc36.noarch 242/706 Verifying : perl-IO-String-1.08-44.fc36.noarch 243/706 Verifying : perl-IPC-Cmd-2:1.04-480.fc36.noarch 244/706 Verifying : perl-IPC-Open3-1.21-484.fc36.noarch 245/706 Verifying : perl-IPC-Run3-0.048-24.fc36.noarch 246/706 Verifying : perl-IPC-SysV-2.09-480.fc36.x86_64 247/706 Verifying : perl-JSON-4.05-2.fc36.noarch 248/706 Verifying : perl-LDAP-1:0.68-6.fc36.noarch 249/706 Verifying : perl-LWP-MediaTypes-6.04-10.fc36.noarch 250/706 Verifying : perl-LWP-Protocol-https-6.10-5.fc36.noarch 251/706 Verifying : perl-Lingua-Translit-0.28-14.fc36.noarch 252/706 Verifying : perl-List-AllUtils-0.19-5.fc36.noarch 253/706 Verifying : perl-List-SomeUtils-0.58-8.fc36.noarch 254/706 Verifying : perl-List-UtilsBy-0.11-14.fc36.noarch 255/706 Verifying : perl-Locale-Maketext-1.29-480.fc36.noarch 256/706 Verifying : perl-Locale-Maketext-Simple-1:0.21-484.fc36.noar 257/706 Verifying : perl-Log-Dispatch-2.70-6.fc36.noarch 258/706 Verifying : perl-Log-Dispatch-FileRotate-1.38-3.fc36.noarch 259/706 Verifying : perl-Log-Log4perl-1.54-4.fc36.noarch 260/706 Verifying : perl-MIME-Base64-3.16-479.fc36.x86_64 261/706 Verifying : perl-MIME-Charset-1.012.2-16.fc36.noarch 262/706 Verifying : perl-MIME-Lite-3.033-3.fc36.noarch 263/706 Verifying : perl-MIME-Types-2.22-2.fc36.noarch 264/706 Verifying : perl-MRO-Compat-0.15-2.fc36.noarch 265/706 Verifying : perl-Mail-Sender-1:0.903-17.fc36.noarch 266/706 Verifying : perl-Mail-Sendmail-0.80-14.fc36.noarch 267/706 Verifying : perl-MailTools-2.21-10.fc36.noarch 268/706 Verifying : perl-Math-BigInt-1:1.9998.29-2.fc36.noarch 269/706 Verifying : perl-Math-Complex-1.59-484.fc36.noarch 270/706 Verifying : perl-Module-CoreList-1:5.20220120-1.fc36.noarch 271/706 Verifying : perl-Module-Implementation-0.09-32.fc36.noarch 272/706 Verifying : perl-Module-Load-1:0.36-479.fc36.noarch 273/706 Verifying : perl-Module-Load-Conditional-0.74-479.fc36.noarc 274/706 Verifying : perl-Module-Metadata-1.000037-479.fc36.noarch 275/706 Verifying : perl-Module-Runtime-0.016-14.fc36.noarch 276/706 Verifying : perl-Mozilla-CA-20211001-2.fc36.noarch 277/706 Verifying : perl-NTLM-1.09-31.fc36.noarch 278/706 Verifying : perl-Net-HTTP-6.22-1.fc36.noarch 279/706 Verifying : perl-Net-SMTP-SSL-1.04-17.fc36.noarch 280/706 Verifying : perl-Net-SSLeay-1.92-2.fc36.x86_64 281/706 Verifying : perl-Number-Compare-0.03-31.fc36.noarch 282/706 Verifying : perl-Opcode-1.50-484.fc36.x86_64 283/706 Verifying : perl-POSIX-1.97-484.fc36.x86_64 284/706 Verifying : perl-Package-Generator-1.106-24.fc36.noarch 285/706 Verifying : perl-Package-Stash-0.39-5.fc36.noarch 286/706 Verifying : perl-Package-Stash-XS-0.29-12.fc36.x86_64 287/706 Verifying : perl-PadWalker-2.5-5.fc36.x86_64 288/706 Verifying : perl-Params-Check-1:0.38-479.fc36.noarch 289/706 Verifying : perl-Params-Classify-0.015-15.fc36.x86_64 290/706 Verifying : perl-Params-Util-1.102-6.fc36.x86_64 291/706 Verifying : perl-Params-Validate-1.30-5.fc36.x86_64 292/706 Verifying : perl-Params-ValidationCompiler-0.30-14.fc36.noar 293/706 Verifying : perl-Parse-RecDescent-1.967015-16.fc36.noarch 294/706 Verifying : perl-PathTools-3.80-479.fc36.x86_64 295/706 Verifying : perl-Pod-Escapes-1:1.07-479.fc36.noarch 296/706 Verifying : perl-Pod-Html-1.27-484.fc36.noarch 297/706 Verifying : perl-Pod-Perldoc-3.28.01-480.fc36.noarch 298/706 Verifying : perl-Pod-Simple-1:3.43-3.fc36.noarch 299/706 Verifying : perl-Pod-Usage-4:2.01-479.fc36.noarch 300/706 Verifying : perl-Ref-Util-0.204-13.fc36.noarch 301/706 Verifying : perl-Ref-Util-XS-0.117-14.fc36.x86_64 302/706 Verifying : perl-Regexp-Common-2017060201-17.fc36.noarch 303/706 Verifying : perl-Role-Tiny-2.002004-5.fc36.noarch 304/706 Verifying : perl-Safe-2.43-484.fc36.noarch 305/706 Verifying : perl-Scalar-List-Utils-5:1.60-463.fc36.x86_64 306/706 Verifying : perl-SelectSaver-1.02-484.fc36.noarch 307/706 Verifying : perl-Socket-4:2.032-3.fc36.x86_64 308/706 Verifying : perl-Sort-Key-1.33-23.fc36.x86_64 309/706 Verifying : perl-Specio-0.47-5.fc36.noarch 310/706 Verifying : perl-Storable-1:3.25-2.fc36.x86_64 311/706 Verifying : perl-Sub-Exporter-0.988-3.fc36.noarch 312/706 Verifying : perl-Sub-Exporter-Progressive-0.001013-17.fc36.n 313/706 Verifying : perl-Sub-Identify-0.14-18.fc36.x86_64 314/706 Verifying : perl-Sub-Install-0.928-30.fc36.noarch 315/706 Verifying : perl-Symbol-1.09-484.fc36.noarch 316/706 Verifying : perl-Sys-Hostname-1.23-484.fc36.x86_64 317/706 Verifying : perl-Sys-Syslog-0.36-480.fc36.x86_64 318/706 Verifying : perl-Term-ANSIColor-5.01-480.fc36.noarch 319/706 Verifying : perl-Term-Cap-1.17-479.fc36.noarch 320/706 Verifying : perl-Text-Balanced-2.04-479.fc36.noarch 321/706 Verifying : perl-Text-BibTeX-0.88-10.fc36.x86_64 322/706 Verifying : perl-Text-CSV-2.01-3.fc36.noarch 323/706 Verifying : perl-Text-Glob-0.11-16.fc36.noarch 324/706 Verifying : perl-Text-ParseWords-3.30-479.fc36.noarch 325/706 Verifying : perl-Text-Roman-3.5-21.fc36.noarch 326/706 Verifying : perl-Text-Soundex-3.05-21.fc36.x86_64 327/706 Verifying : perl-Text-Tabs+Wrap-2021.0814-2.fc36.noarch 328/706 Verifying : perl-Text-Unidecode-1.30-17.fc36.noarch 329/706 Verifying : perl-Thread-Queue-3.14-479.fc36.noarch 330/706 Verifying : perl-Tie-4.6-484.fc36.noarch 331/706 Verifying : perl-Tie-Cycle-1.227-2.fc36.noarch 332/706 Verifying : perl-Time-HiRes-4:1.9767-480.fc36.x86_64 333/706 Verifying : perl-Time-Local-2:1.300-479.fc36.noarch 334/706 Verifying : perl-TimeDate-1:2.33-7.fc36.noarch 335/706 Verifying : perl-Try-Tiny-0.31-2.fc36.noarch 336/706 Verifying : perl-URI-5.10-1.fc36.noarch 337/706 Verifying : perl-Unicode-Collate-1.31-1.fc36.x86_64 338/706 Verifying : perl-Unicode-EastAsianWidth-12.0-7.fc35.noarch 339/706 Verifying : perl-Unicode-LineBreak-2019.001-12.fc36.x86_64 340/706 Verifying : perl-Unicode-Normalize-1.28-479.fc36.x86_64 341/706 Verifying : perl-Unicode-UCD-0.75-484.fc36.noarch 342/706 Verifying : perl-Variable-Magic-0.62-15.fc36.x86_64 343/706 Verifying : perl-WWW-RobotRules-6.02-31.fc36.noarch 344/706 Verifying : perl-XML-LibXML-1:2.0207-5.fc36.x86_64 345/706 Verifying : perl-XML-LibXML-Simple-1.01-8.fc36.noarch 346/706 Verifying : perl-XML-LibXSLT-1.99-8.fc36.x86_64 347/706 Verifying : perl-XML-NamespaceSupport-1.12-16.fc36.noarch 348/706 Verifying : perl-XML-Parser-2.46-10.fc36.x86_64 349/706 Verifying : perl-XML-SAX-1.02-9.fc36.noarch 350/706 Verifying : perl-XML-SAX-Base-1.09-16.fc36.noarch 351/706 Verifying : perl-XML-Writer-0.900-6.fc36.noarch 352/706 Verifying : perl-XML-XPath-1.44-12.fc36.noarch 353/706 Verifying : perl-XString-0.005-5.fc36.x86_64 354/706 Verifying : perl-autovivification-0.18-15.fc36.x86_64 355/706 Verifying : perl-base-2.27-484.fc36.noarch 356/706 Verifying : perl-constant-1.33-480.fc36.noarch 357/706 Verifying : perl-deprecate-0.04-484.fc36.noarch 358/706 Verifying : perl-encoding-4:3.00-484.fc36.x86_64 359/706 Verifying : perl-if-0.60.900-484.fc36.noarch 360/706 Verifying : perl-interpreter-4:5.34.0-484.fc36.x86_64 361/706 Verifying : perl-lib-0.65-484.fc36.x86_64 362/706 Verifying : perl-libintl-perl-1.32-5.fc36.x86_64 363/706 Verifying : perl-libnet-3.13-480.fc36.noarch 364/706 Verifying : perl-libs-4:5.34.0-484.fc36.x86_64 365/706 Verifying : perl-libwww-perl-6.60-2.fc36.noarch 366/706 Verifying : perl-locale-1.10-484.fc36.noarch 367/706 Verifying : perl-meta-notation-5.34.0-484.fc36.noarch 368/706 Verifying : perl-mro-1.25-484.fc36.x86_64 369/706 Verifying : perl-namespace-autoclean-0.29-10.fc36.noarch 370/706 Verifying : perl-namespace-clean-0.27-19.fc36.noarch 371/706 Verifying : perl-open-1.12-484.fc36.noarch 372/706 Verifying : perl-overload-1.33-484.fc36.noarch 373/706 Verifying : perl-overloading-0.02-484.fc36.noarch 374/706 Verifying : perl-parent-1:0.238-479.fc36.noarch 375/706 Verifying : perl-podlators-1:4.14-479.fc36.noarch 376/706 Verifying : perl-sigtrap-1.09-484.fc36.noarch 377/706 Verifying : perl-subs-1.04-484.fc36.noarch 378/706 Verifying : perl-threads-1:2.26-449.fc36.x86_64 379/706 Verifying : perl-threads-shared-1.62-479.fc36.x86_64 380/706 Verifying : perl-vars-1.05-484.fc36.noarch 381/706 Verifying : perl-version-8:0.99.29-5.fc36.x86_64 382/706 Verifying : perltidy-20211029-2.fc36.noarch 383/706 Verifying : pixman-0.40.0-5.fc36.x86_64 384/706 Verifying : pixman-devel-0.40.0-5.fc36.x86_64 385/706 Verifying : poppler-22.01.0-3.fc36.x86_64 386/706 Verifying : poppler-data-0.4.11-2.fc36.noarch 387/706 Verifying : python-pip-wheel-21.3.1-2.fc36.noarch 388/706 Verifying : python-setuptools-wheel-59.6.0-2.fc36.noarch 389/706 Verifying : python3-3.10.2-3.fc36.x86_64 390/706 Verifying : python3-libs-3.10.2-3.fc36.x86_64 391/706 Verifying : readline-devel-8.1-6.fc36.x86_64 392/706 Verifying : sombok-2.4.0-16.fc36.x86_64 393/706 Verifying : sysprof-capture-devel-3.42.1-2.fc36.x86_64 394/706 Verifying : tcl-1:8.6.12-2.fc36.x86_64 395/706 Verifying : tcl-devel-1:8.6.12-2.fc36.x86_64 396/706 Verifying : teckit-2.5.9-8.fc36.x86_64 397/706 Verifying : texinfo-6.8-3.fc36.x86_64 398/706 Verifying : texinfo-tex-6.8-3.fc36.x86_64 399/706 Verifying : texlive-ae-9:svn15878.1.4-48.fc36.noarch 400/706 Verifying : texlive-algorithms-9:svn42428-48.fc36.noarch 401/706 Verifying : texlive-alphalph-9:svn53087-48.fc36.noarch 402/706 Verifying : texlive-amscls-9:svn55378-48.fc36.noarch 403/706 Verifying : texlive-amsfonts-9:svn29208.3.04-48.fc36.noarch 404/706 Verifying : texlive-amsmath-9:svn56514-48.fc36.noarch 405/706 Verifying : texlive-anysize-9:svn15878.0-48.fc36.noarch 406/706 Verifying : texlive-atbegshi-9:svn53051-48.fc36.noarch 407/706 Verifying : texlive-attachfile-9:svn42099-48.fc36.noarch 408/706 Verifying : texlive-attachfile2-9:20210325-47.fc36.noarch 409/706 Verifying : texlive-atveryend-9:svn53108-48.fc36.noarch 410/706 Verifying : texlive-auto-pst-pdf-9:svn56596-48.fc36.noarch 411/706 Verifying : texlive-auxhook-9:svn53173-48.fc36.noarch 412/706 Verifying : texlive-avantgar-9:svn31835.0-48.fc36.noarch 413/706 Verifying : texlive-babel-english-9:svn44495-48.fc36.noarch 414/706 Verifying : texlive-babel-9:svn58999-48.fc36.noarch 415/706 Verifying : texlive-babelbib-9:svn57349-48.fc36.noarch 416/706 Verifying : texlive-base-9:20210325-47.fc36.x86_64 417/706 Verifying : texlive-beamer-9:svn58537-48.fc36.noarch 418/706 Verifying : texlive-bera-9:svn20031.0-48.fc36.noarch 419/706 Verifying : texlive-beton-9:svn15878.0-48.fc36.noarch 420/706 Verifying : texlive-biblatex-9:svn57272-48.fc36.noarch 421/706 Verifying : texlive-bibtex-9:20210325-47.fc36.x86_64 422/706 Verifying : texlive-bidi-9:svn55193-48.fc36.noarch 423/706 Verifying : texlive-bigintcalc-9:svn53172-48.fc36.noarch 424/706 Verifying : texlive-bitset-9:svn53837-48.fc36.noarch 425/706 Verifying : texlive-bookman-9:svn31835.0-48.fc36.noarch 426/706 Verifying : texlive-bookmark-9:svn56885-48.fc36.noarch 427/706 Verifying : texlive-booktabs-9:svn53402-48.fc36.noarch 428/706 Verifying : texlive-breakurl-9:svn29901.1.40-48.fc36.noarch 429/706 Verifying : texlive-breqn-9:svn56422-48.fc36.noarch 430/706 Verifying : texlive-caption-9:svn56771-48.fc36.noarch 431/706 Verifying : texlive-carlisle-9:svn56753-48.fc36.noarch 432/706 Verifying : texlive-catchfile-9:svn53084-48.fc36.noarch 433/706 Verifying : texlive-changepage-9:svn15878.1.0c-48.fc36.noarc 434/706 Verifying : texlive-charter-9:svn15878.0-48.fc36.noarch 435/706 Verifying : texlive-cite-9:svn36428.5.5-48.fc36.noarch 436/706 Verifying : texlive-cm-super-9:svn15878.0-48.fc36.noarch 437/706 Verifying : texlive-cm-9:svn57963-48.fc36.noarch 438/706 Verifying : texlive-cmap-9:svn57640-48.fc36.noarch 439/706 Verifying : texlive-cmextra-9:svn57866-48.fc36.noarch 440/706 Verifying : texlive-collection-basic-9:svn59159-48.fc36.noar 441/706 Verifying : texlive-collection-fontsrecommended-9:svn54074-4 442/706 Verifying : texlive-collection-latex-9:svn57048-48.fc36.noar 443/706 Verifying : texlive-collection-latexrecommended-9:svn57862-4 444/706 Verifying : texlive-colorprofiles-9:svn49086-48.fc36.noarch 445/706 Verifying : texlive-colortbl-9:svn53545-48.fc36.noarch 446/706 Verifying : texlive-courier-9:svn35058.0-48.fc36.noarch 447/706 Verifying : texlive-crop-9:svn55424-48.fc36.noarch 448/706 Verifying : texlive-csquotes-9:svn57844-48.fc36.noarch 449/706 Verifying : texlive-ctable-9:svn38672-48.fc36.noarch 450/706 Verifying : texlive-ctablestack-9:svn38514-48.fc36.noarch 451/706 Verifying : texlive-currfile-9:svn56478-48.fc36.noarch 452/706 Verifying : texlive-dehyph-9:svn48599-48.fc36.noarch 453/706 Verifying : texlive-dvipdfmx-9:20210325-47.fc36.x86_64 454/706 Verifying : texlive-dvips-9:20210325-47.fc36.x86_64 455/706 Verifying : texlive-ec-9:svn25033.1.0-48.fc36.noarch 456/706 Verifying : texlive-enctex-9:svn34957.0-48.fc36.noarch 457/706 Verifying : texlive-enumitem-9:svn51423-48.fc36.noarch 458/706 Verifying : texlive-epsf-9:svn21461.2.7.4-48.fc36.noarch 459/706 Verifying : texlive-epstopdf-9:20210325-47.fc36.noarch 460/706 Verifying : texlive-epstopdf-pkg-9:svn53546-48.fc36.noarch 461/706 Verifying : texlive-eso-pic-9:svn56658-48.fc36.noarch 462/706 Verifying : texlive-etex-pkg-9:svn41784-48.fc36.noarch 463/706 Verifying : texlive-etex-9:svn56291-48.fc36.noarch 464/706 Verifying : texlive-etexcmds-9:svn53171-48.fc36.noarch 465/706 Verifying : texlive-etoolbox-9:svn56554-48.fc36.noarch 466/706 Verifying : texlive-euenc-9:svn19795.0.1h-48.fc36.noarch 467/706 Verifying : texlive-euler-9:svn42428-48.fc36.noarch 468/706 Verifying : texlive-euro-ce-9:svn25714-48.fc36.noarch 469/706 Verifying : texlive-euro-9:svn22191.1.1-48.fc36.noarch 470/706 Verifying : texlive-eurosym-9:svn17265.1.4_subrfix-48.fc36.n 471/706 Verifying : texlive-everysel-9:svn57489-48.fc36.noarch 472/706 Verifying : texlive-everyshi-9:svn57001-48.fc36.noarch 473/706 Verifying : texlive-extsizes-9:svn17263.1.4a-48.fc36.noarch 474/706 Verifying : texlive-fancybox-9:svn18304.1.4-48.fc36.noarch 475/706 Verifying : texlive-fancyhdr-9:svn57672-48.fc36.noarch 476/706 Verifying : texlive-fancyref-9:svn15878.0.9c-48.fc36.noarch 477/706 Verifying : texlive-fancyvrb-9:svn57488-48.fc36.noarch 478/706 Verifying : texlive-filecontents-9:svn52142-48.fc36.noarch 479/706 Verifying : texlive-filehook-9:svn56479-48.fc36.noarch 480/706 Verifying : texlive-finstrut-9:svn21719.0.5-48.fc36.noarch 481/706 Verifying : texlive-firstaid-9:svn58440-48.fc36.noarch 482/706 Verifying : texlive-fix2col-9:svn38770-48.fc36.noarch 483/706 Verifying : texlive-float-9:svn15878.1.3d-48.fc36.noarch 484/706 Verifying : texlive-fontspec-9:svn56594-48.fc36.noarch 485/706 Verifying : texlive-footmisc-9:svn23330.5.5b-48.fc36.noarch 486/706 Verifying : texlive-footnotehyper-9:svn57618-48.fc36.noarch 487/706 Verifying : texlive-fp-9:svn49719-48.fc36.noarch 488/706 Verifying : texlive-fpl-9:svn54512-48.fc36.noarch 489/706 Verifying : texlive-geometry-9:svn54080-48.fc36.noarch 490/706 Verifying : texlive-gettitlestring-9:svn53170-48.fc36.noarch 491/706 Verifying : texlive-glyphlist-9:20210325-47.fc36.noarch 492/706 Verifying : texlive-graphics-cfg-9:svn41448-48.fc36.noarch 493/706 Verifying : texlive-graphics-def-9:svn58539-48.fc36.noarch 494/706 Verifying : texlive-graphics-9:svn56514-48.fc36.noarch 495/706 Verifying : texlive-grfext-9:svn53024-48.fc36.noarch 496/706 Verifying : texlive-grffile-9:svn52756-48.fc36.noarch 497/706 Verifying : texlive-gsftopk-9:20210325-47.fc36.x86_64 498/706 Verifying : texlive-helvetic-9:svn31835.0-48.fc36.noarch 499/706 Verifying : texlive-hobsub-9:svn52810-48.fc36.noarch 500/706 Verifying : texlive-hologo-9:svn53048-48.fc36.noarch 501/706 Verifying : texlive-hopatch-9:svn56106-48.fc36.noarch 502/706 Verifying : texlive-hycolor-9:svn53584-48.fc36.noarch 503/706 Verifying : texlive-hyperref-9:svn58024-48.fc36.noarch 504/706 Verifying : texlive-hyph-utf8-9:svn58619-48.fc36.noarch 505/706 Verifying : texlive-hyphen-base-9:svn58630-48.fc36.noarch 506/706 Verifying : texlive-hyphenex-9:svn57387-48.fc36.noarch 507/706 Verifying : texlive-ifmtarg-9:svn47544-48.fc36.noarch 508/706 Verifying : texlive-ifplatform-9:svn45533-48.fc36.noarch 509/706 Verifying : texlive-iftex-9:svn56594-48.fc36.noarch 510/706 Verifying : texlive-inconsolata-9:svn54512-48.fc36.noarch 511/706 Verifying : texlive-index-9:svn24099.4.1beta-48.fc36.noarch 512/706 Verifying : texlive-infwarerr-9:svn53023-48.fc36.noarch 513/706 Verifying : texlive-intcalc-9:svn53168-48.fc36.noarch 514/706 Verifying : texlive-jknapltx-9:svn19440.0-48.fc36.noarch 515/706 Verifying : texlive-kastrup-9:svn15878.0-48.fc36.noarch 516/706 Verifying : texlive-knuth-lib-9:svn57963-48.fc36.noarch 517/706 Verifying : texlive-knuth-local-9:svn57963-48.fc36.noarch 518/706 Verifying : texlive-koma-script-9:svn58585-48.fc36.noarch 519/706 Verifying : texlive-kpathsea-9:20210325-47.fc36.x86_64 520/706 Verifying : texlive-kvdefinekeys-9:svn53193-48.fc36.noarch 521/706 Verifying : texlive-kvoptions-9:svn56609-48.fc36.noarch 522/706 Verifying : texlive-kvsetkeys-9:svn53166-48.fc36.noarch 523/706 Verifying : texlive-l3backend-9:svn59118-48.fc36.noarch 524/706 Verifying : texlive-l3experimental-9:svn57789-48.fc36.noarch 525/706 Verifying : texlive-l3kernel-9:svn59118-48.fc36.noarch 526/706 Verifying : texlive-l3packages-9:svn59118-48.fc36.noarch 527/706 Verifying : texlive-latex-9:20210325-47.fc36.noarch 528/706 Verifying : texlive-latex-fonts-9:svn28888.0-48.fc36.noarch 529/706 Verifying : texlive-latexbug-9:svn58151-48.fc36.noarch 530/706 Verifying : texlive-latexconfig-9:svn53525-48.fc36.noarch 531/706 Verifying : texlive-letltxmacro-9:svn53022-48.fc36.noarch 532/706 Verifying : texlive-lib-9:20210325-47.fc36.x86_64 533/706 Verifying : texlive-lineno-9:svn57866-48.fc36.noarch 534/706 Verifying : texlive-listings-9:svn55265-48.fc36.noarch 535/706 Verifying : texlive-lm-math-9:svn36915.1.959-48.fc36.noarch 536/706 Verifying : texlive-lm-9:svn58637-48.fc36.noarch 537/706 Verifying : texlive-logreq-9:svn53003-48.fc36.noarch 538/706 Verifying : texlive-ltabptch-9:svn17533.1.74d-48.fc36.noarch 539/706 Verifying : texlive-ltxcmds-9:svn56421-48.fc36.noarch 540/706 Verifying : texlive-ltxmisc-9:svn21927.0-48.fc36.noarch 541/706 Verifying : texlive-lua-alt-getopt-9:svn56414-48.fc36.noarch 542/706 Verifying : texlive-luabidi-9:svn54512-48.fc36.noarch 543/706 Verifying : texlive-luahbtex-9:20210325-47.fc36.x86_64 544/706 Verifying : texlive-lualatex-math-9:svn56541-48.fc36.noarch 545/706 Verifying : texlive-lualibs-9:svn57277-48.fc36.noarch 546/706 Verifying : texlive-luaotfload-9:20210325-47.fc36.noarch 547/706 Verifying : texlive-luatex-9:20210325-47.fc36.x86_64 548/706 Verifying : texlive-luatexbase-9:svn52663-48.fc36.noarch 549/706 Verifying : texlive-lwarp-9:20210325-47.fc36.noarch 550/706 Verifying : texlive-makecmds-9:svn15878.0-48.fc36.noarch 551/706 Verifying : texlive-makeindex-9:20210325-47.fc36.x86_64 552/706 Verifying : texlive-manfnt-font-9:svn54684-48.fc36.noarch 553/706 Verifying : texlive-marginnote-9:svn48383-48.fc36.noarch 554/706 Verifying : texlive-marvosym-9:svn29349.2.2a-48.fc36.noarch 555/706 Verifying : texlive-mathpazo-9:svn52663-48.fc36.noarch 556/706 Verifying : texlive-mathspec-9:svn42773-48.fc36.noarch 557/706 Verifying : texlive-mathtools-9:svn58856-48.fc36.noarch 558/706 Verifying : texlive-mdwtools-9:svn15878.1.05.4-48.fc36.noarc 559/706 Verifying : texlive-memoir-9:svn58666-48.fc36.noarch 560/706 Verifying : texlive-metafont-9:20210325-47.fc36.x86_64 561/706 Verifying : texlive-metalogo-9:svn18611.0.12-48.fc36.noarch 562/706 Verifying : texlive-mflogo-font-9:svn54512-48.fc36.noarch 563/706 Verifying : texlive-mflogo-9:svn42428-48.fc36.noarch 564/706 Verifying : texlive-mfnfss-9:svn46036-48.fc36.noarch 565/706 Verifying : texlive-mfware-9:20210325-47.fc36.x86_64 566/706 Verifying : texlive-microtype-9:svn58394-48.fc36.noarch 567/706 Verifying : texlive-minitoc-9:svn48196-48.fc36.noarch 568/706 Verifying : texlive-mnsymbol-9:svn18651.1.4-48.fc36.noarch 569/706 Verifying : texlive-modes-9:svn56303-48.fc36.noarch 570/706 Verifying : texlive-mparhack-9:svn59066-48.fc36.noarch 571/706 Verifying : texlive-mptopdf-9:20210325-47.fc36.noarch 572/706 Verifying : texlive-ms-9:svn57473-48.fc36.noarch 573/706 Verifying : texlive-multido-9:svn18302.1.42-48.fc36.noarch 574/706 Verifying : texlive-natbib-9:svn20668.8.31b-48.fc36.noarch 575/706 Verifying : texlive-ncntrsbk-9:svn31835.0-48.fc36.noarch 576/706 Verifying : texlive-newfloat-9:svn52906-48.fc36.noarch 577/706 Verifying : texlive-notoccite-9:svn18129.0-48.fc36.noarch 578/706 Verifying : texlive-ntgclass-9:svn56959-48.fc36.noarch 579/706 Verifying : texlive-oberdiek-9:20210325-47.fc36.noarch 580/706 Verifying : texlive-pagesel-9:svn56105-48.fc36.noarch 581/706 Verifying : texlive-palatino-9:svn31835.0-48.fc36.noarch 582/706 Verifying : texlive-paralist-9:svn43021-48.fc36.noarch 583/706 Verifying : texlive-parallel-9:svn15878.0-48.fc36.noarch 584/706 Verifying : texlive-parskip-9:svn58358-48.fc36.noarch 585/706 Verifying : texlive-pdfcolmk-9:svn52912-48.fc36.noarch 586/706 Verifying : texlive-pdfescape-9:svn53082-48.fc36.noarch 587/706 Verifying : texlive-pdflscape-9:svn53047-48.fc36.noarch 588/706 Verifying : texlive-pdfmanagement-testphase-9:svn59194-48.fc 589/706 Verifying : texlive-pdfpages-9:svn58212-48.fc36.noarch 590/706 Verifying : texlive-pdftex-9:20210325-47.fc36.x86_64 591/706 Verifying : texlive-pdftexcmds-9:svn55777-48.fc36.noarch 592/706 Verifying : texlive-pgf-9:svn57240-48.fc36.noarch 593/706 Verifying : texlive-picture-9:svn54867-48.fc36.noarch 594/706 Verifying : texlive-placeins-9:svn19848.2.2-48.fc36.noarch 595/706 Verifying : texlive-plain-9:svn57963-48.fc36.noarch 596/706 Verifying : texlive-polyglossia-9:svn58869-48.fc36.noarch 597/706 Verifying : texlive-psfrag-9:svn15878.3.04-48.fc36.noarch 598/706 Verifying : texlive-pslatex-9:svn57434-48.fc36.noarch 599/706 Verifying : texlive-psnfss-9:svn54694-48.fc36.noarch 600/706 Verifying : texlive-pspicture-9:svn15878.0-48.fc36.noarch 601/706 Verifying : texlive-pst-3d-9:svn17257.1.10-48.fc36.noarch 602/706 Verifying : texlive-pst-coil-9:svn37377.1.07-48.fc36.noarch 603/706 Verifying : texlive-pst-eps-9:svn15878.1.0-48.fc36.noarch 604/706 Verifying : texlive-pst-fill-9:svn15878.1.01-48.fc36.noarch 605/706 Verifying : texlive-pst-grad-9:svn15878.1.06-48.fc36.noarch 606/706 Verifying : texlive-pst-math-9:svn49425-48.fc36.noarch 607/706 Verifying : texlive-pst-node-9:svn54687-48.fc36.noarch 608/706 Verifying : texlive-pst-ovl-9:svn54963-48.fc36.noarch 609/706 Verifying : texlive-pst-plot-9:svn54080-48.fc36.noarch 610/706 Verifying : texlive-pst-text-9:svn49542-48.fc36.noarch 611/706 Verifying : texlive-pst-tools-9:svn54518-48.fc36.noarch 612/706 Verifying : texlive-pst-tree-9:svn43272-48.fc36.noarch 613/706 Verifying : texlive-pstricks-add-9:svn53763-48.fc36.noarch 614/706 Verifying : texlive-pstricks-9:svn58371-48.fc36.noarch 615/706 Verifying : texlive-pxfonts-9:svn15878.0-48.fc36.noarch 616/706 Verifying : texlive-qstest-9:svn15878.0-48.fc36.noarch 617/706 Verifying : texlive-ragged2e-9:svn57638-48.fc36.noarch 618/706 Verifying : texlive-rcs-9:svn15878.0-48.fc36.noarch 619/706 Verifying : texlive-realscripts-9:svn56594-48.fc36.noarch 620/706 Verifying : texlive-refcount-9:svn53164-48.fc36.noarch 621/706 Verifying : texlive-rerunfilecheck-9:svn54841-48.fc36.noarch 622/706 Verifying : texlive-rsfs-9:svn15878.0-48.fc36.noarch 623/706 Verifying : texlive-sansmath-9:svn17997.1.1-48.fc36.noarch 624/706 Verifying : texlive-sansmathaccent-9:svn53628-48.fc36.noarch 625/706 Verifying : texlive-sauerj-9:svn15878.0-48.fc36.noarch 626/706 Verifying : texlive-section-9:svn20180.0-48.fc36.noarch 627/706 Verifying : texlive-seminar-9:svn34011.1.62-48.fc36.noarch 628/706 Verifying : texlive-sepnum-9:svn20186.2.0-48.fc36.noarch 629/706 Verifying : texlive-setspace-9:svn24881.6.7a-48.fc36.noarch 630/706 Verifying : texlive-showexpl-9:svn57414-48.fc36.noarch 631/706 Verifying : texlive-soul-9:svn56495-48.fc36.noarch 632/706 Verifying : texlive-stringenc-9:svn52982-48.fc36.noarch 633/706 Verifying : texlive-subfig-9:svn15878.1.3-48.fc36.noarch 634/706 Verifying : texlive-symbol-9:svn31835.0-48.fc36.noarch 635/706 Verifying : texlive-tex-9:20210325-47.fc36.x86_64 636/706 Verifying : texlive-tex-gyre-math-9:svn41264-48.fc36.noarch 637/706 Verifying : texlive-tex-gyre-9:svn48058-48.fc36.noarch 638/706 Verifying : texlive-tex-ini-files-9:svn40533-48.fc36.noarch 639/706 Verifying : texlive-texlive-common-doc-9:svn54176-48.fc36.no 640/706 Verifying : texlive-texlive-en-9:20210325-47.fc36.noarch 641/706 Verifying : texlive-texlive-msg-translations-9:svn59096-48.f 642/706 Verifying : texlive-texlive-scripts-9:20210325-47.fc36.noarc 643/706 Verifying : texlive-texlive-scripts-extra-9:20210325-47.fc36 644/706 Verifying : texlive-texlive.infra-9:20210325-47.fc36.noarch 645/706 Verifying : texlive-textcase-9:svn52092-48.fc36.noarch 646/706 Verifying : texlive-thumbpdf-9:20210325-47.fc36.noarch 647/706 Verifying : texlive-times-9:svn35058.0-48.fc36.noarch 648/706 Verifying : texlive-tipa-9:svn29349.1.3-48.fc36.noarch 649/706 Verifying : texlive-titlesec-9:svn52413-48.fc36.noarch 650/706 Verifying : texlive-tools-9:svn56514-48.fc36.noarch 651/706 Verifying : texlive-translator-9:svn56052-48.fc36.noarch 652/706 Verifying : texlive-transparent-9:svn52981-48.fc36.noarch 653/706 Verifying : texlive-txfonts-9:svn15878.0-48.fc36.noarch 654/706 Verifying : texlive-typehtml-9:svn17134.0-48.fc36.noarch 655/706 Verifying : texlive-ucharcat-9:svn38907-48.fc36.noarch 656/706 Verifying : texlive-ucs-9:svn35853.2.2-48.fc36.noarch 657/706 Verifying : texlive-underscore-9:svn18261.0-48.fc36.noarch 658/706 Verifying : texlive-unicode-data-9:svn56768-48.fc36.noarch 659/706 Verifying : texlive-unicode-math-9:svn56594-48.fc36.noarch 660/706 Verifying : texlive-uniquecounter-9:svn53162-48.fc36.noarch 661/706 Verifying : texlive-upquote-9:svn26059.v1.3-48.fc36.noarch 662/706 Verifying : texlive-url-9:svn32528.3.4-48.fc36.noarch 663/706 Verifying : texlive-utopia-9:svn15878.0-48.fc36.noarch 664/706 Verifying : texlive-varwidth-9:svn24104.0.92-48.fc36.noarch 665/706 Verifying : texlive-wasy-9:svn53533-48.fc36.noarch 666/706 Verifying : texlive-wasy-type1-9:svn53534-48.fc36.noarch 667/706 Verifying : texlive-wasysym-9:svn54080-48.fc36.noarch 668/706 Verifying : texlive-xcolor-9:svn41044-48.fc36.noarch 669/706 Verifying : texlive-xdvi-9:20210325-47.fc36.x86_64 670/706 Verifying : texlive-xetex-9:20210325-47.fc36.x86_64 671/706 Verifying : texlive-xetexconfig-9:svn45845-48.fc36.noarch 672/706 Verifying : texlive-xifthen-9:svn38929-48.fc36.noarch 673/706 Verifying : texlive-xkeyval-9:svn57006-48.fc36.noarch 674/706 Verifying : texlive-xltxtra-9:svn56594-48.fc36.noarch 675/706 Verifying : texlive-xpatch-9:svn54563-48.fc36.noarch 676/706 Verifying : texlive-xstring-9:svn49946-48.fc36.noarch 677/706 Verifying : texlive-xunicode-9:svn30466.0.981-48.fc36.noarch 678/706 Verifying : texlive-zapfchan-9:svn31835.0-48.fc36.noarch 679/706 Verifying : texlive-zapfding-9:svn31835.0-48.fc36.noarch 680/706 Verifying : texlive-zref-9:svn56611-48.fc36.noarch 681/706 Verifying : tk-1:8.6.12-2.fc36.x86_64 682/706 Verifying : tk-devel-1:8.6.12-2.fc36.x86_64 683/706 Verifying : tre-0.8.0-35.20140228gitc2f5d13.fc36.x86_64 684/706 Verifying : tre-common-0.8.0-35.20140228gitc2f5d13.fc36.noar 685/706 Verifying : tre-devel-0.8.0-35.20140228gitc2f5d13.fc36.x86_6 686/706 Verifying : tzdata-java-2021e-2.fc36.noarch 687/706 Verifying : urw-base35-bookman-fonts-20200910-10.fc36.noarch 688/706 Verifying : urw-base35-c059-fonts-20200910-10.fc36.noarch 689/706 Verifying : urw-base35-d050000l-fonts-20200910-10.fc36.noarc 690/706 Verifying : urw-base35-fonts-20200910-10.fc36.noarch 691/706 Verifying : urw-base35-fonts-common-20200910-10.fc36.noarch 692/706 Verifying : urw-base35-gothic-fonts-20200910-10.fc36.noarch 693/706 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-10.fc36 694/706 Verifying : urw-base35-nimbus-roman-fonts-20200910-10.fc36.n 695/706 Verifying : urw-base35-nimbus-sans-fonts-20200910-10.fc36.no 696/706 Verifying : urw-base35-p052-fonts-20200910-10.fc36.noarch 697/706 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-10 698/706 Verifying : urw-base35-z003-fonts-20200910-10.fc36.noarch 699/706 Verifying : valgrind-1:3.18.1-9.fc36.x86_64 700/706 Verifying : valgrind-devel-1:3.18.1-9.fc36.x86_64 701/706 Verifying : xml-common-0.6.3-58.fc36.noarch 702/706 Verifying : xorg-x11-proto-devel-2021.5-2.fc36.noarch 703/706 Verifying : xz-devel-5.2.5-8.fc36.x86_64 704/706 Verifying : zlib-devel-1.2.11-31.fc36.x86_64 705/706 Verifying : zziplib-0.13.71-6.fc36.x86_64 706/706 Installed products updated. Installed: adobe-mappings-cmap-20190730-3.fc36.noarch adobe-mappings-cmap-deprecated-20190730-3.fc36.noarch adobe-mappings-pdf-20180407-10.fc36.noarch alsa-lib-1.2.6.1-4.fc36.x86_64 annobin-docs-10.51-2.fc36.noarch annobin-plugin-gcc-10.51-2.fc36.x86_64 autoconf-2.71-2.fc36.noarch automake-1.16.5-2.fc36.noarch avahi-libs-0.8-15.fc36.x86_64 biber-2.17-2.fc36.noarch brotli-1.0.9-7.fc36.x86_64 brotli-devel-1.0.9-7.fc36.x86_64 bzip2-devel-1.0.8-11.fc36.x86_64 cairo-1.17.4-5.fc36.x86_64 cairo-devel-1.17.4-5.fc36.x86_64 cmake-filesystem-3.22.2-1.fc36.x86_64 copy-jdk-configs-4.0-3.fc36.noarch cpp-12.0.1-0.5.fc36.x86_64 crypto-policies-scripts-20220203-2.git112f859.fc36.noarch cups-libs-1:2.4.0-3.fc36.x86_64 dbus-libs-1:1.13.20-3.fc36.x86_64 emacs-filesystem-1:27.2-9.fc35.noarch expat-2.4.4-1.fc36.x86_64 flexiblas-3.1.2-1.fc36.x86_64 flexiblas-devel-3.1.2-1.fc36.x86_64 flexiblas-netlib-3.1.2-1.fc36.x86_64 flexiblas-netlib64-3.1.2-1.fc36.x86_64 flexiblas-openblas-openmp-3.1.2-1.fc36.x86_64 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perl-Compress-Raw-Zlib-2.101-480.fc36.x86_64 perl-Convert-ASN1-0.33-2.fc36.noarch perl-Data-Compare-1.27-8.fc36.noarch perl-Data-Dump-1.25-3.fc36.noarch perl-Data-Dumper-2.183-3.fc36.x86_64 perl-Data-OptList-0.112-3.fc36.noarch perl-Data-Uniqid-0.12-27.fc36.noarch perl-Date-ISO8601-0.005-14.fc36.noarch perl-Date-Manip-6.86-2.fc36.noarch perl-DateTime-2:1.55-2.fc36.x86_64 perl-DateTime-Calendar-Julian-0.107-1.fc36.noarch perl-DateTime-Format-Builder-0.8300-6.fc36.noarch perl-DateTime-Format-Strptime-1:1.79-4.fc36.noarch perl-DateTime-Locale-1.33-2.fc36.noarch perl-DateTime-TimeZone-2.51-2.fc36.noarch perl-DateTime-TimeZone-SystemV-0.010-15.fc36.noarch perl-DateTime-TimeZone-Tzfile-0.011-15.fc36.noarch perl-Devel-CallChecker-0.008-15.fc36.x86_64 perl-Devel-Caller-2.06-27.fc36.x86_64 perl-Devel-GlobalDestruction-0.14-17.fc36.noarch perl-Devel-LexAlias-0.05-28.fc36.x86_64 perl-Devel-StackTrace-1:2.04-11.fc36.noarch perl-Digest-1.20-2.fc36.noarch perl-Digest-HMAC-1.04-4.fc36.noarch perl-Digest-MD5-2.58-479.fc36.x86_64 perl-Digest-SHA-1:6.02-480.fc36.x86_64 perl-Dist-CheckConflicts-0.11-24.fc36.noarch perl-DynaLoader-1.50-484.fc36.x86_64 perl-DynaLoader-Functions-0.003-14.fc36.noarch perl-Email-Date-Format-1.005-21.fc36.noarch perl-Encode-4:3.16-484.fc36.x86_64 perl-Encode-Locale-1.05-22.fc36.noarch perl-Errno-1.33-484.fc36.x86_64 perl-Eval-Closure-0.14-17.fc36.noarch perl-Exception-Class-1.45-4.fc36.noarch perl-Exporter-5.76-480.fc36.noarch perl-ExtUtils-MM-Utils-2:7.64-2.fc36.noarch perl-Fcntl-1.14-484.fc36.x86_64 perl-File-Basename-2.85-484.fc36.noarch perl-File-Compare-1.100.600-484.fc36.noarch perl-File-Copy-2.35-484.fc36.noarch perl-File-Find-1.39-484.fc36.noarch perl-File-Find-Rule-0.34-20.fc36.noarch perl-File-Listing-6.14-5.fc36.noarch perl-File-Path-2.18-479.fc36.noarch perl-File-ShareDir-1.118-5.fc36.noarch perl-File-Slurper-0.013-2.fc36.noarch perl-File-Temp-1:0.231.100-479.fc36.noarch perl-File-stat-1.09-484.fc36.noarch perl-FileHandle-2.03-484.fc36.noarch perl-Filter-2:1.60-6.fc36.x86_64 perl-FindBin-1.52-484.fc36.noarch perl-GSSAPI-0.28-38.fc36.x86_64 perl-Getopt-Long-1:2.52-479.fc36.noarch perl-Getopt-Std-1.13-484.fc36.noarch perl-HTML-Parser-3.76-4.fc36.x86_64 perl-HTML-Tagset-3.20-49.fc36.noarch perl-HTTP-Cookies-6.10-5.fc36.noarch perl-HTTP-Date-6.05-8.fc36.noarch perl-HTTP-Message-6.36-2.fc36.noarch perl-HTTP-Negotiate-6.01-31.fc36.noarch perl-HTTP-Tiny-0.080-2.fc36.noarch perl-Hash-Util-FieldHash-1.21-484.fc36.x86_64 perl-I18N-LangTags-0.45-484.fc36.noarch perl-I18N-Langinfo-0.19-484.fc36.x86_64 perl-IO-1.46-484.fc36.x86_64 perl-IO-Compress-2.102-480.fc36.noarch perl-IO-HTML-1.004-5.fc36.noarch perl-IO-Socket-IP-0.41-480.fc36.noarch perl-IO-Socket-SSL-2.074-2.fc36.noarch perl-IO-String-1.08-44.fc36.noarch perl-IPC-Cmd-2:1.04-480.fc36.noarch perl-IPC-Open3-1.21-484.fc36.noarch perl-IPC-Run3-0.048-24.fc36.noarch perl-IPC-SysV-2.09-480.fc36.x86_64 perl-JSON-4.05-2.fc36.noarch perl-LDAP-1:0.68-6.fc36.noarch perl-LWP-MediaTypes-6.04-10.fc36.noarch perl-LWP-Protocol-https-6.10-5.fc36.noarch perl-Lingua-Translit-0.28-14.fc36.noarch perl-List-AllUtils-0.19-5.fc36.noarch perl-List-SomeUtils-0.58-8.fc36.noarch perl-List-UtilsBy-0.11-14.fc36.noarch perl-Locale-Maketext-1.29-480.fc36.noarch perl-Locale-Maketext-Simple-1:0.21-484.fc36.noarch perl-Log-Dispatch-2.70-6.fc36.noarch perl-Log-Dispatch-FileRotate-1.38-3.fc36.noarch perl-Log-Log4perl-1.54-4.fc36.noarch perl-MIME-Base64-3.16-479.fc36.x86_64 perl-MIME-Charset-1.012.2-16.fc36.noarch perl-MIME-Lite-3.033-3.fc36.noarch perl-MIME-Types-2.22-2.fc36.noarch perl-MRO-Compat-0.15-2.fc36.noarch perl-Mail-Sender-1:0.903-17.fc36.noarch perl-Mail-Sendmail-0.80-14.fc36.noarch perl-MailTools-2.21-10.fc36.noarch perl-Math-BigInt-1:1.9998.29-2.fc36.noarch perl-Math-Complex-1.59-484.fc36.noarch perl-Module-CoreList-1:5.20220120-1.fc36.noarch perl-Module-Implementation-0.09-32.fc36.noarch perl-Module-Load-1:0.36-479.fc36.noarch perl-Module-Load-Conditional-0.74-479.fc36.noarch perl-Module-Metadata-1.000037-479.fc36.noarch perl-Module-Runtime-0.016-14.fc36.noarch perl-Mozilla-CA-20211001-2.fc36.noarch perl-NTLM-1.09-31.fc36.noarch perl-Net-HTTP-6.22-1.fc36.noarch perl-Net-SMTP-SSL-1.04-17.fc36.noarch perl-Net-SSLeay-1.92-2.fc36.x86_64 perl-Number-Compare-0.03-31.fc36.noarch perl-Opcode-1.50-484.fc36.x86_64 perl-POSIX-1.97-484.fc36.x86_64 perl-Package-Generator-1.106-24.fc36.noarch perl-Package-Stash-0.39-5.fc36.noarch perl-Package-Stash-XS-0.29-12.fc36.x86_64 perl-PadWalker-2.5-5.fc36.x86_64 perl-Params-Check-1:0.38-479.fc36.noarch perl-Params-Classify-0.015-15.fc36.x86_64 perl-Params-Util-1.102-6.fc36.x86_64 perl-Params-Validate-1.30-5.fc36.x86_64 perl-Params-ValidationCompiler-0.30-14.fc36.noarch perl-Parse-RecDescent-1.967015-16.fc36.noarch perl-PathTools-3.80-479.fc36.x86_64 perl-Pod-Escapes-1:1.07-479.fc36.noarch perl-Pod-Html-1.27-484.fc36.noarch perl-Pod-Perldoc-3.28.01-480.fc36.noarch perl-Pod-Simple-1:3.43-3.fc36.noarch perl-Pod-Usage-4:2.01-479.fc36.noarch perl-Ref-Util-0.204-13.fc36.noarch perl-Ref-Util-XS-0.117-14.fc36.x86_64 perl-Regexp-Common-2017060201-17.fc36.noarch perl-Role-Tiny-2.002004-5.fc36.noarch perl-Safe-2.43-484.fc36.noarch perl-Scalar-List-Utils-5:1.60-463.fc36.x86_64 perl-SelectSaver-1.02-484.fc36.noarch perl-Socket-4:2.032-3.fc36.x86_64 perl-Sort-Key-1.33-23.fc36.x86_64 perl-Specio-0.47-5.fc36.noarch perl-Storable-1:3.25-2.fc36.x86_64 perl-Sub-Exporter-0.988-3.fc36.noarch perl-Sub-Exporter-Progressive-0.001013-17.fc36.noarch perl-Sub-Identify-0.14-18.fc36.x86_64 perl-Sub-Install-0.928-30.fc36.noarch perl-Symbol-1.09-484.fc36.noarch perl-Sys-Hostname-1.23-484.fc36.x86_64 perl-Sys-Syslog-0.36-480.fc36.x86_64 perl-Term-ANSIColor-5.01-480.fc36.noarch perl-Term-Cap-1.17-479.fc36.noarch perl-Text-Balanced-2.04-479.fc36.noarch perl-Text-BibTeX-0.88-10.fc36.x86_64 perl-Text-CSV-2.01-3.fc36.noarch perl-Text-Glob-0.11-16.fc36.noarch perl-Text-ParseWords-3.30-479.fc36.noarch perl-Text-Roman-3.5-21.fc36.noarch perl-Text-Soundex-3.05-21.fc36.x86_64 perl-Text-Tabs+Wrap-2021.0814-2.fc36.noarch perl-Text-Unidecode-1.30-17.fc36.noarch perl-Thread-Queue-3.14-479.fc36.noarch perl-Tie-4.6-484.fc36.noarch perl-Tie-Cycle-1.227-2.fc36.noarch perl-Time-HiRes-4:1.9767-480.fc36.x86_64 perl-Time-Local-2:1.300-479.fc36.noarch perl-TimeDate-1:2.33-7.fc36.noarch perl-Try-Tiny-0.31-2.fc36.noarch perl-URI-5.10-1.fc36.noarch perl-Unicode-Collate-1.31-1.fc36.x86_64 perl-Unicode-EastAsianWidth-12.0-7.fc35.noarch perl-Unicode-LineBreak-2019.001-12.fc36.x86_64 perl-Unicode-Normalize-1.28-479.fc36.x86_64 perl-Unicode-UCD-0.75-484.fc36.noarch perl-Variable-Magic-0.62-15.fc36.x86_64 perl-WWW-RobotRules-6.02-31.fc36.noarch perl-XML-LibXML-1:2.0207-5.fc36.x86_64 perl-XML-LibXML-Simple-1.01-8.fc36.noarch perl-XML-LibXSLT-1.99-8.fc36.x86_64 perl-XML-NamespaceSupport-1.12-16.fc36.noarch perl-XML-Parser-2.46-10.fc36.x86_64 perl-XML-SAX-1.02-9.fc36.noarch perl-XML-SAX-Base-1.09-16.fc36.noarch perl-XML-Writer-0.900-6.fc36.noarch perl-XML-XPath-1.44-12.fc36.noarch perl-XString-0.005-5.fc36.x86_64 perl-autovivification-0.18-15.fc36.x86_64 perl-base-2.27-484.fc36.noarch perl-constant-1.33-480.fc36.noarch perl-deprecate-0.04-484.fc36.noarch perl-encoding-4:3.00-484.fc36.x86_64 perl-if-0.60.900-484.fc36.noarch perl-interpreter-4:5.34.0-484.fc36.x86_64 perl-lib-0.65-484.fc36.x86_64 perl-libintl-perl-1.32-5.fc36.x86_64 perl-libnet-3.13-480.fc36.noarch perl-libs-4:5.34.0-484.fc36.x86_64 perl-libwww-perl-6.60-2.fc36.noarch perl-locale-1.10-484.fc36.noarch perl-meta-notation-5.34.0-484.fc36.noarch perl-mro-1.25-484.fc36.x86_64 perl-namespace-autoclean-0.29-10.fc36.noarch perl-namespace-clean-0.27-19.fc36.noarch perl-open-1.12-484.fc36.noarch perl-overload-1.33-484.fc36.noarch perl-overloading-0.02-484.fc36.noarch perl-parent-1:0.238-479.fc36.noarch perl-podlators-1:4.14-479.fc36.noarch perl-sigtrap-1.09-484.fc36.noarch perl-subs-1.04-484.fc36.noarch perl-threads-1:2.26-449.fc36.x86_64 perl-threads-shared-1.62-479.fc36.x86_64 perl-vars-1.05-484.fc36.noarch perl-version-8:0.99.29-5.fc36.x86_64 perltidy-20211029-2.fc36.noarch pixman-0.40.0-5.fc36.x86_64 pixman-devel-0.40.0-5.fc36.x86_64 poppler-22.01.0-3.fc36.x86_64 poppler-data-0.4.11-2.fc36.noarch python-pip-wheel-21.3.1-2.fc36.noarch python-setuptools-wheel-59.6.0-2.fc36.noarch python3-3.10.2-3.fc36.x86_64 python3-libs-3.10.2-3.fc36.x86_64 readline-devel-8.1-6.fc36.x86_64 sombok-2.4.0-16.fc36.x86_64 sysprof-capture-devel-3.42.1-2.fc36.x86_64 tcl-1:8.6.12-2.fc36.x86_64 tcl-devel-1:8.6.12-2.fc36.x86_64 teckit-2.5.9-8.fc36.x86_64 texinfo-6.8-3.fc36.x86_64 texinfo-tex-6.8-3.fc36.x86_64 texlive-ae-9:svn15878.1.4-48.fc36.noarch texlive-algorithms-9:svn42428-48.fc36.noarch texlive-alphalph-9:svn53087-48.fc36.noarch texlive-amscls-9:svn55378-48.fc36.noarch texlive-amsfonts-9:svn29208.3.04-48.fc36.noarch texlive-amsmath-9:svn56514-48.fc36.noarch texlive-anysize-9:svn15878.0-48.fc36.noarch texlive-atbegshi-9:svn53051-48.fc36.noarch texlive-attachfile-9:svn42099-48.fc36.noarch texlive-attachfile2-9:20210325-47.fc36.noarch texlive-atveryend-9:svn53108-48.fc36.noarch texlive-auto-pst-pdf-9:svn56596-48.fc36.noarch texlive-auxhook-9:svn53173-48.fc36.noarch texlive-avantgar-9:svn31835.0-48.fc36.noarch texlive-babel-9:svn58999-48.fc36.noarch texlive-babel-english-9:svn44495-48.fc36.noarch texlive-babelbib-9:svn57349-48.fc36.noarch texlive-base-9:20210325-47.fc36.x86_64 texlive-beamer-9:svn58537-48.fc36.noarch texlive-bera-9:svn20031.0-48.fc36.noarch texlive-beton-9:svn15878.0-48.fc36.noarch texlive-biblatex-9:svn57272-48.fc36.noarch texlive-bibtex-9:20210325-47.fc36.x86_64 texlive-bidi-9:svn55193-48.fc36.noarch texlive-bigintcalc-9:svn53172-48.fc36.noarch texlive-bitset-9:svn53837-48.fc36.noarch texlive-bookman-9:svn31835.0-48.fc36.noarch texlive-bookmark-9:svn56885-48.fc36.noarch texlive-booktabs-9:svn53402-48.fc36.noarch texlive-breakurl-9:svn29901.1.40-48.fc36.noarch texlive-breqn-9:svn56422-48.fc36.noarch texlive-caption-9:svn56771-48.fc36.noarch texlive-carlisle-9:svn56753-48.fc36.noarch texlive-catchfile-9:svn53084-48.fc36.noarch texlive-changepage-9:svn15878.1.0c-48.fc36.noarch texlive-charter-9:svn15878.0-48.fc36.noarch texlive-cite-9:svn36428.5.5-48.fc36.noarch texlive-cm-9:svn57963-48.fc36.noarch texlive-cm-super-9:svn15878.0-48.fc36.noarch texlive-cmap-9:svn57640-48.fc36.noarch texlive-cmextra-9:svn57866-48.fc36.noarch texlive-collection-basic-9:svn59159-48.fc36.noarch texlive-collection-fontsrecommended-9:svn54074-48.fc36.noarch texlive-collection-latex-9:svn57048-48.fc36.noarch texlive-collection-latexrecommended-9:svn57862-48.fc36.noarch texlive-colorprofiles-9:svn49086-48.fc36.noarch texlive-colortbl-9:svn53545-48.fc36.noarch texlive-courier-9:svn35058.0-48.fc36.noarch texlive-crop-9:svn55424-48.fc36.noarch texlive-csquotes-9:svn57844-48.fc36.noarch texlive-ctable-9:svn38672-48.fc36.noarch texlive-ctablestack-9:svn38514-48.fc36.noarch texlive-currfile-9:svn56478-48.fc36.noarch texlive-dehyph-9:svn48599-48.fc36.noarch texlive-dvipdfmx-9:20210325-47.fc36.x86_64 texlive-dvips-9:20210325-47.fc36.x86_64 texlive-ec-9:svn25033.1.0-48.fc36.noarch texlive-enctex-9:svn34957.0-48.fc36.noarch texlive-enumitem-9:svn51423-48.fc36.noarch texlive-epsf-9:svn21461.2.7.4-48.fc36.noarch texlive-epstopdf-9:20210325-47.fc36.noarch texlive-epstopdf-pkg-9:svn53546-48.fc36.noarch texlive-eso-pic-9:svn56658-48.fc36.noarch texlive-etex-9:svn56291-48.fc36.noarch texlive-etex-pkg-9:svn41784-48.fc36.noarch texlive-etexcmds-9:svn53171-48.fc36.noarch texlive-etoolbox-9:svn56554-48.fc36.noarch texlive-euenc-9:svn19795.0.1h-48.fc36.noarch texlive-euler-9:svn42428-48.fc36.noarch texlive-euro-9:svn22191.1.1-48.fc36.noarch texlive-euro-ce-9:svn25714-48.fc36.noarch texlive-eurosym-9:svn17265.1.4_subrfix-48.fc36.noarch 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texlive-graphics-cfg-9:svn41448-48.fc36.noarch texlive-graphics-def-9:svn58539-48.fc36.noarch texlive-grfext-9:svn53024-48.fc36.noarch texlive-grffile-9:svn52756-48.fc36.noarch texlive-gsftopk-9:20210325-47.fc36.x86_64 texlive-helvetic-9:svn31835.0-48.fc36.noarch texlive-hobsub-9:svn52810-48.fc36.noarch texlive-hologo-9:svn53048-48.fc36.noarch texlive-hopatch-9:svn56106-48.fc36.noarch texlive-hycolor-9:svn53584-48.fc36.noarch texlive-hyperref-9:svn58024-48.fc36.noarch texlive-hyph-utf8-9:svn58619-48.fc36.noarch texlive-hyphen-base-9:svn58630-48.fc36.noarch texlive-hyphenex-9:svn57387-48.fc36.noarch texlive-ifmtarg-9:svn47544-48.fc36.noarch texlive-ifplatform-9:svn45533-48.fc36.noarch texlive-iftex-9:svn56594-48.fc36.noarch texlive-inconsolata-9:svn54512-48.fc36.noarch texlive-index-9:svn24099.4.1beta-48.fc36.noarch texlive-infwarerr-9:svn53023-48.fc36.noarch texlive-intcalc-9:svn53168-48.fc36.noarch texlive-jknapltx-9:svn19440.0-48.fc36.noarch texlive-kastrup-9:svn15878.0-48.fc36.noarch texlive-knuth-lib-9:svn57963-48.fc36.noarch texlive-knuth-local-9:svn57963-48.fc36.noarch texlive-koma-script-9:svn58585-48.fc36.noarch texlive-kpathsea-9:20210325-47.fc36.x86_64 texlive-kvdefinekeys-9:svn53193-48.fc36.noarch texlive-kvoptions-9:svn56609-48.fc36.noarch texlive-kvsetkeys-9:svn53166-48.fc36.noarch texlive-l3backend-9:svn59118-48.fc36.noarch texlive-l3experimental-9:svn57789-48.fc36.noarch texlive-l3kernel-9:svn59118-48.fc36.noarch texlive-l3packages-9:svn59118-48.fc36.noarch texlive-latex-9:20210325-47.fc36.noarch texlive-latex-fonts-9:svn28888.0-48.fc36.noarch texlive-latexbug-9:svn58151-48.fc36.noarch texlive-latexconfig-9:svn53525-48.fc36.noarch texlive-letltxmacro-9:svn53022-48.fc36.noarch texlive-lib-9:20210325-47.fc36.x86_64 texlive-lineno-9:svn57866-48.fc36.noarch texlive-listings-9:svn55265-48.fc36.noarch texlive-lm-9:svn58637-48.fc36.noarch texlive-lm-math-9:svn36915.1.959-48.fc36.noarch texlive-logreq-9:svn53003-48.fc36.noarch texlive-ltabptch-9:svn17533.1.74d-48.fc36.noarch texlive-ltxcmds-9:svn56421-48.fc36.noarch texlive-ltxmisc-9:svn21927.0-48.fc36.noarch texlive-lua-alt-getopt-9:svn56414-48.fc36.noarch texlive-luabidi-9:svn54512-48.fc36.noarch texlive-luahbtex-9:20210325-47.fc36.x86_64 texlive-lualatex-math-9:svn56541-48.fc36.noarch texlive-lualibs-9:svn57277-48.fc36.noarch texlive-luaotfload-9:20210325-47.fc36.noarch texlive-luatex-9:20210325-47.fc36.x86_64 texlive-luatexbase-9:svn52663-48.fc36.noarch texlive-lwarp-9:20210325-47.fc36.noarch texlive-makecmds-9:svn15878.0-48.fc36.noarch texlive-makeindex-9:20210325-47.fc36.x86_64 texlive-manfnt-font-9:svn54684-48.fc36.noarch texlive-marginnote-9:svn48383-48.fc36.noarch texlive-marvosym-9:svn29349.2.2a-48.fc36.noarch texlive-mathpazo-9:svn52663-48.fc36.noarch texlive-mathspec-9:svn42773-48.fc36.noarch texlive-mathtools-9:svn58856-48.fc36.noarch texlive-mdwtools-9:svn15878.1.05.4-48.fc36.noarch texlive-memoir-9:svn58666-48.fc36.noarch texlive-metafont-9:20210325-47.fc36.x86_64 texlive-metalogo-9:svn18611.0.12-48.fc36.noarch texlive-mflogo-9:svn42428-48.fc36.noarch texlive-mflogo-font-9:svn54512-48.fc36.noarch texlive-mfnfss-9:svn46036-48.fc36.noarch texlive-mfware-9:20210325-47.fc36.x86_64 texlive-microtype-9:svn58394-48.fc36.noarch texlive-minitoc-9:svn48196-48.fc36.noarch texlive-mnsymbol-9:svn18651.1.4-48.fc36.noarch texlive-modes-9:svn56303-48.fc36.noarch texlive-mparhack-9:svn59066-48.fc36.noarch texlive-mptopdf-9:20210325-47.fc36.noarch texlive-ms-9:svn57473-48.fc36.noarch texlive-multido-9:svn18302.1.42-48.fc36.noarch texlive-natbib-9:svn20668.8.31b-48.fc36.noarch texlive-ncntrsbk-9:svn31835.0-48.fc36.noarch texlive-newfloat-9:svn52906-48.fc36.noarch texlive-notoccite-9:svn18129.0-48.fc36.noarch texlive-ntgclass-9:svn56959-48.fc36.noarch texlive-oberdiek-9:20210325-47.fc36.noarch texlive-pagesel-9:svn56105-48.fc36.noarch texlive-palatino-9:svn31835.0-48.fc36.noarch texlive-paralist-9:svn43021-48.fc36.noarch texlive-parallel-9:svn15878.0-48.fc36.noarch texlive-parskip-9:svn58358-48.fc36.noarch texlive-pdfcolmk-9:svn52912-48.fc36.noarch texlive-pdfescape-9:svn53082-48.fc36.noarch texlive-pdflscape-9:svn53047-48.fc36.noarch texlive-pdfmanagement-testphase-9:svn59194-48.fc36.noarch texlive-pdfpages-9:svn58212-48.fc36.noarch texlive-pdftex-9:20210325-47.fc36.x86_64 texlive-pdftexcmds-9:svn55777-48.fc36.noarch texlive-pgf-9:svn57240-48.fc36.noarch texlive-picture-9:svn54867-48.fc36.noarch texlive-placeins-9:svn19848.2.2-48.fc36.noarch texlive-plain-9:svn57963-48.fc36.noarch texlive-polyglossia-9:svn58869-48.fc36.noarch texlive-psfrag-9:svn15878.3.04-48.fc36.noarch texlive-pslatex-9:svn57434-48.fc36.noarch texlive-psnfss-9:svn54694-48.fc36.noarch texlive-pspicture-9:svn15878.0-48.fc36.noarch texlive-pst-3d-9:svn17257.1.10-48.fc36.noarch texlive-pst-coil-9:svn37377.1.07-48.fc36.noarch texlive-pst-eps-9:svn15878.1.0-48.fc36.noarch texlive-pst-fill-9:svn15878.1.01-48.fc36.noarch texlive-pst-grad-9:svn15878.1.06-48.fc36.noarch texlive-pst-math-9:svn49425-48.fc36.noarch texlive-pst-node-9:svn54687-48.fc36.noarch texlive-pst-ovl-9:svn54963-48.fc36.noarch texlive-pst-plot-9:svn54080-48.fc36.noarch texlive-pst-text-9:svn49542-48.fc36.noarch texlive-pst-tools-9:svn54518-48.fc36.noarch texlive-pst-tree-9:svn43272-48.fc36.noarch texlive-pstricks-9:svn58371-48.fc36.noarch texlive-pstricks-add-9:svn53763-48.fc36.noarch texlive-pxfonts-9:svn15878.0-48.fc36.noarch texlive-qstest-9:svn15878.0-48.fc36.noarch texlive-ragged2e-9:svn57638-48.fc36.noarch texlive-rcs-9:svn15878.0-48.fc36.noarch texlive-realscripts-9:svn56594-48.fc36.noarch texlive-refcount-9:svn53164-48.fc36.noarch texlive-rerunfilecheck-9:svn54841-48.fc36.noarch texlive-rsfs-9:svn15878.0-48.fc36.noarch texlive-sansmath-9:svn17997.1.1-48.fc36.noarch texlive-sansmathaccent-9:svn53628-48.fc36.noarch texlive-sauerj-9:svn15878.0-48.fc36.noarch texlive-section-9:svn20180.0-48.fc36.noarch texlive-seminar-9:svn34011.1.62-48.fc36.noarch texlive-sepnum-9:svn20186.2.0-48.fc36.noarch texlive-setspace-9:svn24881.6.7a-48.fc36.noarch texlive-showexpl-9:svn57414-48.fc36.noarch texlive-soul-9:svn56495-48.fc36.noarch texlive-stringenc-9:svn52982-48.fc36.noarch texlive-subfig-9:svn15878.1.3-48.fc36.noarch texlive-symbol-9:svn31835.0-48.fc36.noarch texlive-tex-9:20210325-47.fc36.x86_64 texlive-tex-gyre-9:svn48058-48.fc36.noarch texlive-tex-gyre-math-9:svn41264-48.fc36.noarch texlive-tex-ini-files-9:svn40533-48.fc36.noarch texlive-texlive-common-doc-9:svn54176-48.fc36.noarch texlive-texlive-en-9:20210325-47.fc36.noarch texlive-texlive-msg-translations-9:svn59096-48.fc36.noarch texlive-texlive-scripts-9:20210325-47.fc36.noarch texlive-texlive-scripts-extra-9:20210325-47.fc36.noarch texlive-texlive.infra-9:20210325-47.fc36.noarch texlive-textcase-9:svn52092-48.fc36.noarch texlive-thumbpdf-9:20210325-47.fc36.noarch texlive-times-9:svn35058.0-48.fc36.noarch texlive-tipa-9:svn29349.1.3-48.fc36.noarch texlive-titlesec-9:svn52413-48.fc36.noarch texlive-tools-9:svn56514-48.fc36.noarch texlive-translator-9:svn56052-48.fc36.noarch texlive-transparent-9:svn52981-48.fc36.noarch texlive-txfonts-9:svn15878.0-48.fc36.noarch texlive-typehtml-9:svn17134.0-48.fc36.noarch texlive-ucharcat-9:svn38907-48.fc36.noarch texlive-ucs-9:svn35853.2.2-48.fc36.noarch texlive-underscore-9:svn18261.0-48.fc36.noarch texlive-unicode-data-9:svn56768-48.fc36.noarch texlive-unicode-math-9:svn56594-48.fc36.noarch texlive-uniquecounter-9:svn53162-48.fc36.noarch texlive-upquote-9:svn26059.v1.3-48.fc36.noarch texlive-url-9:svn32528.3.4-48.fc36.noarch texlive-utopia-9:svn15878.0-48.fc36.noarch texlive-varwidth-9:svn24104.0.92-48.fc36.noarch texlive-wasy-9:svn53533-48.fc36.noarch texlive-wasy-type1-9:svn53534-48.fc36.noarch texlive-wasysym-9:svn54080-48.fc36.noarch texlive-xcolor-9:svn41044-48.fc36.noarch texlive-xdvi-9:20210325-47.fc36.x86_64 texlive-xetex-9:20210325-47.fc36.x86_64 texlive-xetexconfig-9:svn45845-48.fc36.noarch texlive-xifthen-9:svn38929-48.fc36.noarch texlive-xkeyval-9:svn57006-48.fc36.noarch texlive-xltxtra-9:svn56594-48.fc36.noarch texlive-xpatch-9:svn54563-48.fc36.noarch texlive-xstring-9:svn49946-48.fc36.noarch texlive-xunicode-9:svn30466.0.981-48.fc36.noarch texlive-zapfchan-9:svn31835.0-48.fc36.noarch texlive-zapfding-9:svn31835.0-48.fc36.noarch texlive-zref-9:svn56611-48.fc36.noarch tk-1:8.6.12-2.fc36.x86_64 tk-devel-1:8.6.12-2.fc36.x86_64 tre-0.8.0-35.20140228gitc2f5d13.fc36.x86_64 tre-common-0.8.0-35.20140228gitc2f5d13.fc36.noarch tre-devel-0.8.0-35.20140228gitc2f5d13.fc36.x86_64 tzdata-java-2021e-2.fc36.noarch urw-base35-bookman-fonts-20200910-10.fc36.noarch urw-base35-c059-fonts-20200910-10.fc36.noarch urw-base35-d050000l-fonts-20200910-10.fc36.noarch urw-base35-fonts-20200910-10.fc36.noarch urw-base35-fonts-common-20200910-10.fc36.noarch urw-base35-gothic-fonts-20200910-10.fc36.noarch urw-base35-nimbus-mono-ps-fonts-20200910-10.fc36.noarch urw-base35-nimbus-roman-fonts-20200910-10.fc36.noarch urw-base35-nimbus-sans-fonts-20200910-10.fc36.noarch urw-base35-p052-fonts-20200910-10.fc36.noarch urw-base35-standard-symbols-ps-fonts-20200910-10.fc36.noarch urw-base35-z003-fonts-20200910-10.fc36.noarch valgrind-1:3.18.1-9.fc36.x86_64 valgrind-devel-1:3.18.1-9.fc36.x86_64 xml-common-0.6.3-58.fc36.noarch xorg-x11-proto-devel-2021.5-2.fc36.noarch xz-devel-5.2.5-8.fc36.x86_64 zlib-devel-1.2.11-31.fc36.x86_64 zziplib-0.13.71-6.fc36.x86_64 Complete! Finish: build setup for R-4.1.2-4.fc36.src.rpm Start: rpmbuild R-4.1.2-4.fc36.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644019200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.YXPhUn + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-4.1.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/R-4.1.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd R-4.1.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch):' Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fixpath --fuzz=0 patching file src/scripts/javareconf.in Hunk #1 succeeded at 79 (offset 1 line). + cat + chmod +x /builddir/build/BUILD/R-4.1.2/R-prov + cat + chmod +x /builddir/build/BUILD/R-4.1.2/R-req + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.k0HJyR + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh R 4.1.2-4.fc36 x86_64 + cd R-4.1.2 + echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}' + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open + case "x86_64" in + export 'CC=gcc -m64' + CC='gcc -m64' + export 'CXX=g++ -m64' + CXX='g++ -m64' + export 'F77=gfortran -m64' + F77='gfortran -m64' + export 'FC=gfortran -m64' + FC='gfortran -m64' + export 'FCFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls' + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls' + export 'FFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls' + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls' + sed -i '/"checking whether the BLAS is complete/i r_cv_complete_blas=yes' configure + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC='gcc -m64' + export CC + CXX='g++ -m64' + export CXX + '[' x '!=' x ']' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + tee CONFIGURE.log + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./tools/config.sub ++ basename ./tools/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub '/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./tools/config.guess ++ basename ./tools/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess '/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-system-tre --with-system-valgrind-headers --with-lapack --with-blas=flexiblas --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling MAKEINFO=texi2any rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... no checking for byacc... no checking for yacc... no checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for x86_64-redhat-linux-gnu-gcc... gcc -m64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc -m64 accepts -g... yes checking for gcc -m64 option to enable C11 features... none needed checking how to run the C preprocessor... gcc -m64 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc -m64 needs -traditional... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -m64 -E looking for a modern Fortran compiler checking for x86_64-redhat-linux-gnu-gfortran... gfortran -m64 checking whether the compiler supports GNU Fortran... yes checking whether gfortran -m64 accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ -m64 accepts -g... yes checking for g++ -m64 option to enable C++11 features... none needed checking whether g++ -m64 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection can compile C++ code... yes checking how to run the C++ preprocessor... g++ -m64 -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc -m64 accepts -fvisibility... yes checking whether g++ -m64 accepts -fvisibility... yes checking whether gfortran -m64 accepts -fvisibility... yes checking for x86_64-redhat-linux-gnu-gcc... no checking for x86_64-redhat-linux-gnu-objcc... no checking for x86_64-redhat-linux-gnu-objc... no checking for x86_64-redhat-linux-gnu-cc... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-clang... no checking for gcc... gcc checking whether the compiler supports GNU Objective C... no checking whether gcc accepts -g... no checking whether g++ -m64 can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc -m64... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc -m64 object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc -m64 supports -fno-rtti -fno-exceptions... no checking for gcc -m64 option to produce PIC... -fPIC -DPIC checking if gcc -m64 PIC flag -fPIC -DPIC works... yes checking if gcc -m64 static flag -static works... no checking if gcc -m64 supports -c -o file.o... yes checking if gcc -m64 supports -c -o file.o... (cached) yes checking whether the gcc -m64 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -m64 -E checking for ld used by g++ -m64... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ -m64 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ -m64 option to produce PIC... -fPIC -DPIC checking if g++ -m64 PIC flag -fPIC -DPIC works... yes checking if g++ -m64 static flag -static works... no checking if g++ -m64 supports -c -o file.o... yes checking if g++ -m64 supports -c -o file.o... (cached) yes checking whether the g++ -m64 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran -m64 option to produce PIC... -fPIC checking if gfortran -m64 PIC flag -fPIC works... yes checking if gfortran -m64 static flag -static works... no checking if gfortran -m64 supports -c -o file.o... yes checking if gfortran -m64 supports -c -o file.o... (cached) yes checking whether the gfortran -m64 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... yes checking for features.h... yes checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc -m64 options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc -m64 supports -c -o FILE.lo... yes checking for gcc -m64 option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran -m64... -v checking for Fortran libraries of gfortran -m64... -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc -m64... -v checking for C libraries of gcc -m64... -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran -m64 appends underscores to external names... yes checking whether gfortran -m64 appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran -m64 and gcc -m64 agree on int and double... yes checking whether gfortran -m64 and gcc -m64 agree on double complex... yes checking for gfortran -m64 option to support OpenMP... -fopenmp checking whether g++ -m64 accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether g++ -m64 supports C++11 features with -std=gnu++11... yes checking whether g++ -m64 supports C++14 features with -std=gnu++14... yes checking whether g++ -m64 supports C++17 features with -std=gnu++17... yes checking whether g++ -m64 supports C++20 features with -std=gnu++20... yes checking for g++ -m64 -std=gnu++14 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... no checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -lflexiblas... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... (cached) yes checking for dpstrf_... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... no checking for XDR support... no checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for tre_regncompb in -ltre... yes checking for tre/tre.h... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.81.0 checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran -m64 option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for x86_64-redhat-linux-gnu-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... yes checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc -m64... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking R is now configured for x86_64-redhat-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -m64 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection Fortran fixed-form compiler: gfortran -m64 -fno-optimize-sibling-calls -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls Default C++ compiler: g++ -m64 -std=gnu++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection C++11 compiler: g++ -m64 -std=gnu++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection C++14 compiler: g++ -m64 -std=gnu++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection C++17 compiler: g++ -m64 -std=gnu++17 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection C++20 compiler: g++ -m64 -std=gnu++20 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection Fortran free-form compiler: gfortran -m64 -fno-optimize-sibling-calls -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(in blas), tre, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling, static HTML Capabilities skipped: Options not enabled: shared BLAS Recommended packages: yes + cat CONFIGURE.log + grep -A30 'R is now' - + make V=1 make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/etc' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/share' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/scripts' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include' mkdir -p -- ../../include make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr' making xdr.d from xdr.c making xdr_float.d from xdr_float.c making xdr_mem.d from xdr_mem.c making xdr_stdio.d from xdr_stdio.c make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr' gcc -m64 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c xdr.c -o xdr.o gcc -m64 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c xdr_float.c -o xdr_float.o gcc -m64 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o gcc -m64 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o ranlib libxdr.a make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/appl' gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c integrate.c -o integrate.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c interv.c -o interv.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c maxcol.c -o maxcol.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c optim.c -o optim.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pretty.c -o pretty.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c uncmin.c -o uncmin.o gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dchdc.f -o dchdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dpbfa.f -o dpbfa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dpbsl.f -o dpbsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dpoco.f -o dpoco.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dpodi.f -o dpodi.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dpofa.f -o dpofa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dposl.f -o dposl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dqrdc.f -o dqrdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dqrdc2.f -o dqrdc2.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dqrls.f -o dqrls.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dqrsl.f -o dqrsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dqrutl.f -o dqrutl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dsvdc.f -o dsvdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dtrco.f -o dtrco.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dtrsl.f -o dtrsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/appl' #@make install-Linpack make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath' gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix' gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rembedded.c -o Rembedded.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dynload.c -o dynload.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c system.c -o system.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sys-unix.c -o sys-unix.o sys-unix.c: In function 'R_ExpandFileName_unix.constprop': sys-unix.c:159:39: warning: '%s' directive output may be truncated writing up to 4093 bytes into a region of size between 1 and 4094 [-Wformat-truncation=] 159 | (void)snprintf(buff, len, "%s/%s", home, s2); | ^~ In file included from /usr/include/stdio.h:894, from ../../src/include/Rinternals.h:39, from ../../src/include/Defn.h:81, from sys-unix.c:35: In function 'snprintf', inlined from 'R_ExpandFileName_unix.constprop' at sys-unix.c:159:8: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 2 and 8188 bytes into a destination of size 4095 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sys-std.c -o sys-std.o gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix' gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -DR_HOME='"/builddir/build/BUILD/R-4.1.2"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c CommandLineArgs.c -o CommandLineArgs.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rdynload.c -o Rdynload.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Renviron.c -o Renviron.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RNG.c -o RNG.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agrep.c -o agrep.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c altclasses.c -o altclasses.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c altrep.c -o altrep.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c apply.c -o apply.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c arithmetic.c -o arithmetic.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c array.c -o array.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c attrib.c -o attrib.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bind.c -o bind.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c builtin.c -o builtin.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c character.c -o character.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coerce.c -o coerce.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c colors.c -o colors.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c complex.c -o complex.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c connections.c -o connections.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c context.c -o context.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cum.c -o cum.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcf.c -o dcf.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c datetime.c -o datetime.o In file included from /usr/include/features.h:490, from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ../../src/include/Rmath.h:41, from datetime.c:40: In function 'mbstowcs', inlined from 'R_strptime' at Rstrptime.h:1292:6, inlined from 'do_strptime' at datetime.c:1127:7: /usr/include/bits/stdlib.h:115:10: warning: argument 1 is null but the corresponding size argument 3 value is 1000 [-Wnonnull] 115 | return __glibc_fortify_n (mbstowcs, __len, sizeof (wchar_t), | ^~~~~~~~~~~~~~~~~ /usr/include/bits/stdlib.h: In function 'do_strptime': /usr/include/bits/stdlib.h:99:15: note: in a call to function '__mbstowcs_alias' declared with attribute 'access (read_only, 2)' 99 | extern size_t __REDIRECT_NTH (__mbstowcs_alias, | ^~~~~~~~~~~~~~ In function 'mbstowcs', inlined from 'R_strptime' at Rstrptime.h:1292:6, inlined from 'do_strptime' at datetime.c:1127:7: /usr/include/bits/stdlib.h:115:10: warning: argument 1 is null but the corresponding size argument 3 value is 1000 [-Wnonnull] 115 | return __glibc_fortify_n (mbstowcs, __len, sizeof (wchar_t), | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdlib.h:1027, from datetime.c:106: /usr/include/bits/stdlib.h: In function 'do_strptime': /usr/include/bits/stdlib.h:95:15: note: in a call to function '__mbstowcs_chk' declared with attribute 'access (read_only, 2)' 95 | extern size_t __mbstowcs_chk (wchar_t *__restrict __dst, | ^~~~~~~~~~~~~~ In function 'mbstowcs', inlined from 'R_strptime' at Rstrptime.h:1297:6, inlined from 'do_strptime' at datetime.c:1127:7: /usr/include/bits/stdlib.h:115:10: warning: argument 1 is null but the corresponding size argument 3 value is 1000 [-Wnonnull] 115 | return __glibc_fortify_n (mbstowcs, __len, sizeof (wchar_t), | ^~~~~~~~~~~~~~~~~ /usr/include/bits/stdlib.h: In function 'do_strptime': /usr/include/bits/stdlib.h:99:15: note: in a call to function '__mbstowcs_alias' declared with attribute 'access (read_only, 2)' 99 | extern size_t __REDIRECT_NTH (__mbstowcs_alias, | ^~~~~~~~~~~~~~ In function 'mbstowcs', inlined from 'R_strptime' at Rstrptime.h:1297:6, inlined from 'do_strptime' at datetime.c:1127:7: /usr/include/bits/stdlib.h:115:10: warning: argument 1 is null but the corresponding size argument 3 value is 1000 [-Wnonnull] 115 | return __glibc_fortify_n (mbstowcs, __len, sizeof (wchar_t), | ^~~~~~~~~~~~~~~~~ /usr/include/bits/stdlib.h: In function 'do_strptime': /usr/include/bits/stdlib.h:95:15: note: in a call to function '__mbstowcs_chk' declared with attribute 'access (read_only, 2)' 95 | extern size_t __mbstowcs_chk (wchar_t *__restrict __dst, | ^~~~~~~~~~~~~~ In function 'mbstowcs', inlined from 'R_strptime' at Rstrptime.h:1292:6, inlined from 'do_strptime' at datetime.c:1127:7: /usr/include/bits/stdlib.h:115:10: warning: argument 1 is null but the corresponding size argument 3 value is 1000 [-Wnonnull] 115 | return __glibc_fortify_n (mbstowcs, __len, sizeof (wchar_t), | ^~~~~~~~~~~~~~~~~ /usr/include/bits/stdlib.h: In function 'do_strptime': /usr/include/bits/stdlib.h:99:15: note: in a call to function '__mbstowcs_alias' declared with attribute 'access (read_only, 2)' 99 | extern size_t __REDIRECT_NTH (__mbstowcs_alias, | ^~~~~~~~~~~~~~ In function 'mbstowcs', inlined from 'R_strptime' at Rstrptime.h:1297:6, inlined from 'do_strptime' at datetime.c:1127:7: /usr/include/bits/stdlib.h:115:10: warning: argument 1 is null but the corresponding size argument 3 value is 1000 [-Wnonnull] 115 | return __glibc_fortify_n (mbstowcs, __len, sizeof (wchar_t), | ^~~~~~~~~~~~~~~~~ /usr/include/bits/stdlib.h: In function 'do_strptime': /usr/include/bits/stdlib.h:99:15: note: in a call to function '__mbstowcs_alias' declared with attribute 'access (read_only, 2)' 99 | extern size_t __REDIRECT_NTH (__mbstowcs_alias, | ^~~~~~~~~~~~~~ gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c debug.c -o debug.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c deparse.c -o deparse.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devices.c -o devices.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dotcode.c -o dotcode.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dounzip.c -o dounzip.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dstruct.c -o dstruct.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c duplicate.c -o duplicate.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c edit.c -o edit.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c engine.c -o engine.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c envir.c -o envir.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c errors.c -o errors.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c eval.c -o eval.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c format.c -o format.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gevents.c -o gevents.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gram.c -o gram.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gram-ex.c -o gram-ex.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c graphics.c -o graphics.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c grep.c -o grep.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c identical.c -o identical.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c inlined.c -o inlined.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c inspect.c -o inspect.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c internet.c -o internet.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c iosupport.c -o iosupport.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lapack.c -o lapack.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c list.c -o list.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c localecharset.c -o localecharset.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c logic.c -o logic.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c main.c -o main.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mapply.c -o mapply.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match.c -o match.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c memory.c -o memory.o memory.c: In function 'ReleaseLargeFreeVectors': memory.c:1099:25: warning: the comparison will always evaluate as 'true' for the pointer operand in '(const char *)s + 48' must not be NULL [-Waddress] 1099 | if (CHAR(s) != NULL) { | ^~ gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c names.c -o names.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c objects.c -o objects.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c options.c -o options.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c paste.c -o paste.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c patterns.c -o patterns.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c platform.c -o platform.o platform.c: In function 'do_copy': platform.c:2745:35: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size between 2 and 4097 [-Wformat-truncation=] 2745 | snprintf(this, PATH_MAX+1, "%s%s", from, name); | ^~ In file included from /usr/include/stdio.h:894, from ../../src/include/Rinternals.h:39, from ../../src/include/Defn.h:81, from platform.c:41: In function 'snprintf', inlined from 'do_copy' at platform.c:2745:5: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 1 and 8191 bytes into a destination of size 4097 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ platform.c: In function 'do_copy': platform.c:2812:39: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size between 2 and 4097 [-Wformat-truncation=] 2812 | snprintf(dest, PATH_MAX+1, "%s%s", to, name); | ^~ In function 'snprintf', inlined from 'do_copy' at platform.c:2812:2: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 1 and 8191 bytes into a destination of size 4097 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ platform.c: In function 'do_copy': platform.c:2758:39: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size between 2 and 4097 [-Wformat-truncation=] 2758 | snprintf(dest, PATH_MAX+1, "%s%s", to, name); | ^~ In function 'snprintf', inlined from 'do_copy' at platform.c:2758:2: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 1 and 8191 bytes into a destination of size 4097 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ platform.c: In function 'do_copy': platform.c:2790:45: warning: '%s' directive output may be truncated writing up to 4094 bytes into a region of size between 2 and 4096 [-Wformat-truncation=] 2790 | snprintf(p, PATH_MAX+1, "%s/%s", name, de->d_name); | ^~ In function 'snprintf', inlined from 'do_copy' at platform.c:2790:3: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 2 and 8190 bytes into a destination of size 4097 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot.c -o plot.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot3d.c -o plot3d.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plotmath.c -o plotmath.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c print.c -o print.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c printarray.c -o printarray.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c printvector.c -o printvector.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c printutils.c -o printutils.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qsort.c -o qsort.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c radixsort.c -o radixsort.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c random.c -o random.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c raw.c -o raw.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c registration.c -o registration.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c relop.c -o relop.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlocale.c -o rlocale.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c saveload.c -o saveload.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scan.c -o scan.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seq.c -o seq.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c serialize.c -o serialize.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sort.c -o sort.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c source.c -o source.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c split.c -o split.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sprintf.c -o sprintf.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c startup.c -o startup.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subassign.c -o subassign.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subscript.c -o subscript.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subset.c -o subset.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c summary.c -o summary.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sysutils.c -o sysutils.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c times.c -o times.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c unique.c -o unique.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util.c -o util.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c version.c -o version.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_alab_her.c -o g_alab_her.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_cntrlify.c -o g_cntrlify.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_fontdb.c -o g_fontdb.o gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_her_glyph.c -o g_her_glyph.o gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c xxxpr.f -o xxxpr.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/xdr/libxdr.a -lflexiblas -lgfortran -lm -lquadmath -lreadline -ltre -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' mkdir -p -- /builddir/build/BUILD/R-4.1.2/bin/exec mkdir -p -- /builddir/build/BUILD/R-4.1.2/lib make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' gcc -m64 -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rmain.c -o Rmain.o gcc -m64 -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o R.bin Rmain.o -lR make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c internet.c -o internet.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c sock.c -o sock.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -m64 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-4.1.2/modules make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' gcc -m64 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Lapack.c -o Lapack.o gcc -m64 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o lapack.so Lapack.o -lR -lflexiblas -lgfortran -lm -lquadmath make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' gcc -m64 -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devX11.c -o devX11.o gcc -m64 -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rotated.c -o rotated.o gcc -m64 -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbitmap.c -o rbitmap.o gcc -m64 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm gcc -m64 -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dataentry.c -o dataentry.o gcc -m64 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' mkdir -p -- ../../library make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/profile' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/translations' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/translations' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/translations' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base' building package 'base' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c text.c -o text.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rmd5.c -o Rmd5.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c md5.c -o md5.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signals.c -o signals.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c install.c -o install.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c getfmts.c -o getfmts.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c http.c -o http.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gramLatex.c -o gramLatex.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gramRd.c -o gramRd.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pdscan.c -o pdscan.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c io.c -o io.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c size.c -o size.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sock.c -o sock.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stubs.c -o stubs.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils.c -o utils.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c axis_scales.c -o axis_scales.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chull.c -o chull.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devices.c -o devices.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stubs.c -o stubs.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c colors.c -o colors.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clippath.c -o clippath.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c patterns.c -o patterns.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mask.c -o mask.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devCairo.c -o devCairo.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devPicTeX.c -o devPicTeX.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devPS.c -o devPS.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devQuartz.c -o devQuartz.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo' make[9]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo' gcc -m64 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cairoBM.c -o cairoBM.o gcc -m64 -shared -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo' make[8]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo' make[7]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo' make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c base.c -o base.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c graphics.c -o graphics.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c par.c -o par.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot.c -o plot.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot3d.c -o plot3d.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stem.c -o stem.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c kmeans.c -o kmeans.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ansari.c -o ansari.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bandwidths.c -o bandwidths.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chisqsim.c -o chisqsim.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d2x2xk.c -o d2x2xk.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fexact.c -o fexact.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c kendall.c -o kendall.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ks.c -o ks.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c line.c -o line.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c smooth.c -o smooth.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c prho.c -o prho.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c swilk.c -o swilk.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ksmooth.c -o ksmooth.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c loessc.c -o loessc.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c monoSpl.c -o monoSpl.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c isoreg.c -o isoreg.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Srunmed.c -o Srunmed.o In file included from Srunmed.c:32: In function 'runmedint', inlined from 'Trunmed' at Trunmed.c:412:5, inlined from 'runmed' at Srunmed.c:277:2: Trunmed.c:380:39: warning: 'every_i' may be used uninitialized [-Wmaybe-uninitialized] 380 | if(print_level >= 3 || (i % every_i) == 0) { | ~~~^~~~~~~~~~ Trunmed.c: In function 'runmed': Trunmed.c:349:14: note: 'every_i' was declared here 349 | R_xlen_t every_i; | ^~~~~~~ gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dblcen.c -o dblcen.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c distance.c -o distance.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hclust-utils.c -o hclust-utils.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nls.c -o nls.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rWishart.c -o rWishart.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c HoltWinters.c -o HoltWinters.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c PPsum.c -o PPsum.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c arima.c -o arima.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c burg.c -o burg.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c filter.c -o filter.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mAR.c -o mAR.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pacf.c -o pacf.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c starma.c -o starma.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c port.c -o port.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c family.c -o family.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sbart.c -o sbart.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c approx.c -o approx.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c loglin.c -o loglin.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lowess.c -o lowess.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c massdist.c -o massdist.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c splines.c -o splines.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lm.c -o lm.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c complete_cases.c -o complete_cases.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cov.c -o cov.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c deriv.c -o deriv.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fft.c -o fft.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fourier.c -o fourier.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c model.c -o model.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c optim.c -o optim.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c optimize.c -o optimize.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c integrate.c -o integrate.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c random.c -o random.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c distn.c -o distn.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c zeroin.c -o zeroin.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcont.c -o rcont.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c influence.c -o influence.o gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c bsplvd.f -o bsplvd.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c bvalue.f -o bvalue.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c bvalus.f -o bvalus.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c loessf.f -o loessf.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c ppr.f -o ppr.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c qsbart.f -o qsbart.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c sgram.f -o sgram.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c sinerp.f -o sinerp.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c sslvrg.f -o sslvrg.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c stxwx.f -o stxwx.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c hclust.f -o hclust.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c kmns.f -o kmns.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c eureka.f -o eureka.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c stl.f -o stl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -msse2 -mfpmath=sse -c portsrc.f -o portsrc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran portsrc.f:6663:72: 6663 | NCOMP = NCOMP + 1 | ^ Warning: 'ncomp' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:6575:26: 6575 | * MAXLST,NCOMP,NUMINC,NUMLST,NUMORD,NUMWGT | ^ note: 'ncomp' was declared here portsrc.f:6648:72: 6648 | LIST(JCOL) = NUMORD | ^ Warning: 'jcol' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:6574:44: 6574 | INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC, | ^ note: 'jcol' was declared here portsrc.f:5521:51: 5521 | IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ Warning: 'alphak' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:5377:37: 5377 | DOUBLE PRECISION A, ADI, ALPHAK, B, DFACSQ, DST, DTOL, D1, D2, | ^ note: 'alphak' was declared here portsrc.f:5658:18: 5658 | IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 | ^ Warning: 'psifac' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:5378:62: 5378 | 1 LK, OLDPHI, PHI, PHIMAX, PHIMIN, PSIFAC, RAD, | ^ note: 'psifac' was declared here portsrc.f:10329:55: 10329 | IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ Warning: 'alphak' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:10076:29: 10076 | DOUBLE PRECISION ALPHAK, AKI, AKK, DELTA, DST, EPS, GTSTA, LK, | ^ note: 'alphak' was declared here portsrc.f:10412:72: 10412 | V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA) | ^ Warning: 'gtsta' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:10076:63: 10076 | DOUBLE PRECISION ALPHAK, AKI, AKK, DELTA, DST, EPS, GTSTA, LK, | ^ note: 'gtsta' was declared here portsrc.f:10324:72: 10324 | LK = DMAX1(LK, PHI*W(PHIPIN)) | ^ Warning: 'phi' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:10077:34: 10077 | 1 OLDPHI, PHI, PHIMAX, PHIMIN, PSIFAC, RAD, RADSQ, | ^ note: 'phi' was declared here portsrc.f:10466:10: 10466 | IF (KA .GE. KAMIN) GO TO 340 | ^ Warning: 'kamin' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:10075:32: 10075 | 1 J, K, KALIM, KAMIN, K1, LK0, PHIPIN, Q, Q0, UK0, X | ^ note: 'kamin' was declared here portsrc.f:12105:58: 12105 | DOUBLE PRECISION DNWTST, GHINVG, GNORM, GNORM0, NRED, PRED, RAD, | ^ Warning: 'nred' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:12246:72: 12246 | V(DST0) = DNWTST | ^ Warning: 'dnwtst' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:12105:29: 12105 | DOUBLE PRECISION DNWTST, GHINVG, GNORM, GNORM0, NRED, PRED, RAD, | ^ note: 'dnwtst' was declared here portsrc.f:2457:32: 2457 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ Warning: 'nred' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:2514:72: 2514 | 60 V(DST0) = DS0 | ^ Warning: 'ds0' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:2457:26: 2457 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ note: 'ds0' was declared here portsrc.f:8086:32: 8086 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ Warning: 'nred' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:8173:72: 8173 | 90 V(DST0) = DS0 | ^ Warning: 'ds0' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:8086:26: 8086 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ note: 'ds0' was declared here portsrc.f:8652:72: 8652 | 210 IV(FDH) = HES | ^ Warning: 'hes' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:8450:25: 8450 | INTEGER GSAVE1, HES, HMI, HPI, HPM, I, K, KIND, L, M, MM1, MM1O2, | ^ note: 'hes' was declared here portsrc.f:3587:10: 3587 | IF (LIV .LT. MIV2) GO TO 300 | ^ Warning: 'miv2' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:3520:54: 3520 | INTEGER ALG1, I, II, IV1, J, K, L, M, MIV1, MIV2, NDFALT, PARSV1, | ^ note: 'miv2' was declared here portsrc.f:12079:72: 12079 | 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | ^ Warning: 'g1' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:11822:16: 11822 | INTEGER G1, GI, I, IV1, IVMODE, JTOL1, L, LH, NN, QTR1, | ^ note: 'g1' was declared here portsrc.f:458:72: 458 | 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | ^ Warning: 'g1' may be used uninitialized [-Wmaybe-uninitialized] portsrc.f:157:16: 157 | INTEGER G1, GI, I, IV1, IVMODE, JTOL1, K, L, LH, NN, QTR1, | ^ note: 'g1' was declared here gfortran -m64 -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c lminfl.f -o lminfl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c do_substitute_direct.c -o do_substitute_direct.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c slot.c -o slot.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c class_support.c -o class_support.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tests.c -o tests.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils.c -o utils.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clippath.c -o clippath.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gpar.c -o gpar.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c grid.c -o grid.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c just.c -o just.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c layout.c -o layout.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mask.c -o mask.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matrix.c -o matrix.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c register.c -o register.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c state.c -o state.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c unit.c -o unit.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util.c -o util.o gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c viewport.c -o viewport.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src' making splines.d from splines.c gcc -m64 -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c splines.c -o splines.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tcltk.c -o tcltk.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tcltk_unix.c -o tcltk_unix.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rngstream.c -o rngstream.o gcc -m64 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fork.c -o fork.o gcc -m64 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' you should 'make docs' now ... make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc' creating doc/NEWS creating doc/NEWS.pdf make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/html' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' installing parsed Rd make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' building/updating package metadata ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' writing package indices make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' building all R object docs converting help for package 'base' Arithmetic html AsIs html Bessel html CallExternal html Colon html Comparison html Constants html Control html Cstack_info html DateTimeClasses html Dates html Defunct html Deprecated html Encoding html EnvVar html Extract html Extract.data.frame html Extract.factor html Extremes html Foreign-internal html Foreign html Hyperbolic html ISOdatetime html Internal html InternalMethods html La_library html La_version html Last.value html Log html Logic html LongVectors html MathFun html Memory-limits html Memory html NA html NULL html NumericConstants html Ops.Date html Paren html Platform html Primitive html Quotes html Random-user html Random html RdUtils html Recall html Reserved html Rhome html Round html S3method html Special html Startup html Syntax html Sys.getenv html Sys.getpid html Sys.glob html Sys.info html Sys.localeconv html Sys.readlink html Sys.setFileTime html Sys.setenv html Sys.sleep html Sys.time html Sys.which html Trig html UTF8filepaths html UseMethod html Vectorize html Version html abbreviate html agrep html all html all.equal html allnames html any html aperm html append html apply html args html array html as.Date html as.POSIXlt html as.data.frame html as.environment html as.function html asplit html assign html assignOps html attach html attr html attributes html autoload html backsolve html base-defunct html REDIRECT:topic Previous alias or file overwritten by alias: ../../library/base/help/Version.html REDIRECT:topic Previous alias or file overwritten by alias: ../../library/base/help/Platform.html base-deprecated html base-internal html base-package html basename html bincode html bindenv html bitwise html body html bquote html browser html browserText html builtins html by html c html call html callCC html capabilities html cat html cbind html char.expand html character html charmatch html chartr html chkDots html chol html chol2inv html class html col html colSums html colnames html commandArgs html comment html complex html conditions html conflicts html connections html contributors html copyright html crossprod html cumsum html curlGetHeaders html cut.POSIXt html cut html data.class html data.frame html data.matrix html dataframeHelpers html date html dcf html debug html delayedAssign html deparse html deparseOpts html det html detach html dev html diag html diff html difftime html dim html dimnames html do.call html dontCheck html dots html double html dput html drop html droplevels html dump html duplicated html dynload html eapply html eigen html encodeString html environment html eval html exists html expand.grid html expression html extSoftVersion html factor html file.access html file.choose html file.info html file.path html file.show html files html files2 html find.package html findInterval html force html forceAndCall html formals html format html format.info html format.pval html formatDL html formatc html function html funprog html gc html gc.time html gctorture html get html getCallingDLL html getDLLRegisteredRoutines html getLoadedDLLs html getNativeSymbolInfo html gettext html getwd html gl html grep html grepRaw html groupGeneric html grouping html gzcon html hexmode html iconv html icuSetCollate html identical html identity html ifelse html integer html interaction html interactive html invisible html is.finite html is.function html is.language html is.object html is.recursive html is.single html is.unsorted html isR html isS4 html isSymmetric html jitter html kappa html kronecker html l10n_info html labels html lapply html lazyload html length html lengths html levels html libPaths html libcurlVersion html library html library.dynam html license html list html list.files html list2DF html list2env html load html locales html logical html lower.tri html ls html make.names html make.unique html mapply html marginSums html mat.or.vec html match html match.arg html match.call html match.fun html matmult html matrix html maxCol html mean html memCompress html memlimits html memory.profile html merge html message html missing html mode html name html names html nargs html nchar html nlevels html noquote html norm html normalizePath html notyet html nrow html ns-dblcolon html ns-hooks html ns-internal html ns-load html ns-reflect html ns-topenv html numeric html numeric_version html octmode html on.exit html options html order html outer html parse html paste html path.expand html pcre_config html pipeOp html plot html pmatch html polyroot html pos.to.env html pretty html print html print.dataframe html print.default html prmatrix html proc.time html prod html proportions html pushBack html qr html qraux html quit html range html rank html rapply html raw html rawConnection html rawConversion html readBin html readChar html readLines html readRDS html readRenviron html readline html reg.finalizer html regex html regmatches html rep html replace html rev html rle html rm html round.POSIXt html row html row.names html rowsum html sQuote html sample html save html scale html scan html search html seek html seq.Date html seq.POSIXt html seq html sequence html serialize html setTimeLimit html sets html shQuote html showConnections html sign html sink html slice.index html slotOp html socketSelect html solve html sort html source html split html sprintf html srcfile html standardGeneric html startsWith html stop html stopifnot html strptime html strrep html strsplit html strtoi html strtrim html structure html strwrap html subset html substitute html substr html sum html summary html svd html sweep html switch html sys.parent html sys.source html system html system.file html system.time html system2 html t html table html tabulate html tapply html taskCallback html taskCallbackManager html taskCallbackNames html tempfile html textconnections html tilde html timezones html toString html trace html traceback html tracemem html transform html trimws html try html typeof html unique html unlink html unlist html unname html userhooks html utf8Conversion html validUTF8 html vector html warning html warnings html weekday.POSIXt html which html which.min html with html withVisible html write html writeLines html xtfrm html zMachine html zScript html zapsmall html zpackages html zutils html Signals html converting help for package 'tools' CRANtools html HTMLheader html HTMLlinks html QC html Rcmd html Rd2HTML html Rd2txt_options html RdTextFilter html Rdiff html Rdindex html Rdutils html SweaveTeXFilter html add_datalist html assertCondition html bibstyle html buildVignette html buildVignettes html charsets html checkFF html checkMD5sums html checkPoFiles html checkRd html checkRdaFiles html checkTnF html checkVignettes html check_packages_in_dir html codoc html compactPDF html delimMatch html dependsOnPkgs html encoded html fileutils html find_gs_cmd html getVignetteInfo html loadRdMacros html makeLazyLoading html make_translations_pkg html makevars html md5sum html package_dependencies html package_native_routine_registration_skeleton html parseLatex html parse_Rd html print.via.format html pskill html psnice html read.00Index html showNonASCII html startDynamicHelp html testInstalledPackage html texi2dvi html toHTML html toRd html toTitleCase html tools-defunct html tools-deprecated html tools-package html undoc html updatePACKAGES html update_pkg_po html userdir html vignetteEngine html vignetteInfo html writePACKAGES html xgettext html converting help for package 'utils' BATCH html COMPILE html DLL.version html INSTALL html LINK html PkgUtils html Question html REMOVE html RHOME html RShowDoc html RSiteSearch html Rconsole html Rprof html Rprofmem html Rscript html Rtangle html RweaveLatex html SHLIB html Sweave html SweaveSyntConv html SweaveUtils html URLencode html View html adist html alarm html apropos html aregexec html arrangeWindows html askYesNo html aspell-utils html aspell html available.packages html bibentry html browseEnv html browseURL html browseVignettes html bug.report html capture.output html changedFiles html charClass html choose.dir html choose.files html chooseBioCmirror html chooseCRANmirror html citEntry html citation html cite html clipboard html close.socket html combn html compareVersion html contrib.url html count.fields html create.post html data html dataentry html debugcall html debugger html demo html download.file html download.packages html edit html edit.data.frame html example html file.edit html filetest html findLineNum html fix html flush.console html format html getAnywhere html getFromNamespace html getParseData html getS3method html getWindowsHandle html getWindowsHandles html glob2rx html globalVariables html hasName html head html help html help.request html help.search html help.start html hsearch-utils html install.packages html installed.packages html isS3method html isS3stdGen html localeToCharset html ls_str html maintainer html make.packages.html html make.socket html memory.size html menu html methods html mirrorAdmin html modifyList html news html nsl html object.size html package.skeleton html packageDescription html packageName html packageStatus html page html person html process.events html prompt html promptData html promptPackage html rcompgen html read.DIF html read.fortran html read.fwf html read.socket html read.table html readRegistry html recover html relist html remove.packages html removeSource html roman html rtags html savehistory html select.list html sessionInfo html setRepositories html setWindowTitle html shortPathName html sourceutils html stack html str html strcapture html summaryRprof html tar html toLatex html txtProgressBar html type.convert html untar html unzip html update.packages html url.show html utils-defunct html utils-deprecated html utils-package html vignette html warnErrList html winDialog html winMenus html winProgressBar html winextras html write.table html zip html converting help for package 'grDevices' Devices html Hershey html Japanese html Type1Font html adjustcolor html as.graphicsAnnot html as.raster html axisTicks html boxplot.stats html bringToTop html cairo html cairoSymbolFont html check.options html chull html cm html col2rgb html colorRamp html colors html contourLines html convertColor html densCols html dev html dev.capabilities html dev.capture html dev.flush html dev.interactive html dev.size html dev2 html dev2bitmap html devAskNewPage html embedFonts html extendrange html getGraphicsEvent html grDevices-package html grSoftVersion html gray html gray.colors html hcl html hsv html make.rgb html msgWindow html n2mfrow html nclass html palette html palettes html pdf html pdf.options html pictex html plotmath html postscript html postscriptFonts html pretty.Date html ps.options html quartz html quartzFonts html recordGraphics html recordplot html rgb html rgb2hsv html trans3d html windows html windows.options html windowsFonts html x11 html x11Fonts html xfig html xy.coords html xyTable html xyz.coords html png html savePlot html converting help for package 'graphics' abline html arrows html assocplot html axTicks html axis.POSIXct html axis html barplot html box html boxplot html boxplot.matrix html bxp html cdplot html clip html contour html convertXY html coplot html curve html dotchart html filled.contour html fourfoldplot html frame html graphics-defunct html graphics-package html grid html hist.POSIXt html hist html identify html image html layout html legend html lines html locator html matplot html mosaicplot html mtext html pairs html panel.smooth html par html persp html pie html plot.dataframe html plot.default html plot.design html plot.factor html plot.formula html plot.raster html plot.table html plot.window html plot.xy html plothistogram html points html polygon html polypath html rasterImage html rect html rug html screen html segments html smoothScatter html spineplot html stars html stem html stripchart html strwidth html sunflowerplot html symbols html text html title html units html xspline html zAxis html converting help for package 'stats' AIC html ARMAacf html ARMAtoMA html Beta html Binomial html Cauchy html Chisquare html Distributions html Exponential html Fdist html GammaDist html Geometric html HoltWinters html Hypergeometric html IQR html KalmanLike html Logistic html Lognormal html Multinom html NLSstAsymptotic html NLSstClosestX html NLSstLfAsymptote html NLSstRtAsymptote html NegBinomial html Normal html Pair html Poisson html SSD html SSasymp html SSasympOff html SSasympOrig html SSbiexp html SSfol html SSfpl html SSgompertz html SSlogis html SSmicmen html SSweibull html SignRank html StructTS html TDist html Tukey html TukeyHSD html Uniform html Weibull html Wilcoxon html acf html acf2AR html add1 html addmargins html aggregate html alias html anova html anova.glm html anova.lm html anova.mlm html ansari.test html aov html approxfun html ar html ar.ols html arima html arima.sim html arima0 html as.hclust html asOneSidedFormula html ave html bandwidth html bartlett.test html binom.test html biplot html biplot.princomp html birthday html box.test html cancor html case.names html checkMFClasses html chisq.test html cmdscale html coef html complete.cases html confint html constrOptim html contrast html contrasts html convolve html cophenetic html cor html cor.test html cov.wt html cpgram html cutree html decompose html delete.response html dendrapply html dendrogram html density html deriv html deviance html df.residual html diffinv html dist html dummy.coef html ecdf html eff.aovlist html effects html embed html expand.model.frame html extractAIC html factanal html factor.scope html family html fft html filter html fisher.test html fitted.values html fivenum html fligner.test html formula html formula.nls html friedman.test html ftable html ftable.formula html getInitial html glm html glm.control html glm.summaries html hclust html heatmap html identify.hclust html influence.measures html integrate html interaction.plot html is.empty html isoreg html kernapply html kernel html kmeans html kruskal.test html ks.test html ksmooth html lag html lag.plot html line html listof html lm html lm.influence html lm.summaries html lmfit html loadings html loess html loess.control html logLik html loglin html lowess html ls.diag html ls.print html lsfit html mad html mahalanobis html make.link html makepredictcall html manova html mantelhaen.test html mauchly.test html mcnemar.test html median html medpolish html model.extract html model.frame html model.matrix html model.tables html monthplot html mood.test html na.action html na.contiguous html na.fail html nafns html naprint html nextn html nlm html nlminb html nls html nls.control html nobs html numericDeriv html offset html oneway.test html optim html optimize html order.dendrogram html p.adjust html pairwise.prop.test html pairwise.t.test html pairwise.table html pairwise.wilcox.test html plot.HoltWinters html plot.acf html plot.density html plot.isoreg html plot.lm html plot.ppr html plot.profile.nls html plot.spec html plot.stepfun html plot.ts html poisson.test html poly html power html power.anova.test html power.prop.test html power.t.test html pp.test html ppoints html ppr html prcomp html predict.HoltWinters html predict html predict.arima html predict.glm html predict.lm html predict.loess html predict.nls html predict.smooth.spline html preplot html princomp html print.power.htest html print.ts html printCoefmat html profile html profile.nls html proj html prop.test html prop.trend.test html qqnorm html quade.test html quantile html r2dtable html rWishart html read.ftable html rect.hclust html relevel html reorder.dendrogram html reorder.factor html replications html reshape html residuals html runmed html scatter.smooth html screeplot html sd html se.contrast html selfStart html setNames html shapiro.test html sigma html simulate html smooth html smooth.spline html smoothEnds html sortedXyData html spec.ar html spec.pgram html spec.taper html spectrum html splinefun html start html stat.anova html stats-defunct html stats-deprecated html stats-package html step html stepfun html stl html stlmethods html summary.aov html summary.glm html summary.lm html summary.manova html summary.nls html summary.princomp html supsmu html symnum html t.test html termplot html terms html terms.formula html terms.object html time html toeplitz html ts-methods html ts html ts.plot html ts.union html tsSmooth html tsdiag html tsp html uniroot html update html update.formula html var.test html varimax html vcov html weighted.mean html weighted.residuals html weights html wilcox.test html window html xtabs html zC html converting help for package 'datasets' AirPassengers html BJsales html BOD html ChickWeight html DNase html EuStockMarkets html Formaldehyde html HairEyeColor html Harman23.cor html Harman74.cor html Indometh html InsectSprays html JohnsonJohnson html LakeHuron html LifeCycleSavings html Loblolly html Nile html Orange html OrchardSprays html PlantGrowth html Puromycin html Theoph html Titanic html ToothGrowth html UCBAdmissions html UKDriverDeaths html UKLungDeaths html UKgas html USAccDeaths html USArrests html USJudgeRatings html USPersonalExpenditure html VADeaths html WWWusage html WorldPhones html ability.cov html airmiles html airquality html anscombe html attenu html attitude html austres html beavers html cars html chickwts html co2 html crimtab html datasets-package html discoveries html esoph html euro html eurodist html faithful html freeny html infert html iris html islands html lh html longley html lynx html morley html mtcars html nhtemp html nottem html npk html occupationalStatus html precip html presidents html pressure html quakes html randu html rivers html rock html sleep html stackloss html state html sunspot.month html sunspot.year html sunspots html swiss html treering html trees html uspop html volcano html warpbreaks html women html zCO2 html converting help for package 'methods' BasicClasses html Classes html Classes_Details html Documentation html EmptyMethodsList-class html EnvironmentClass html GenericFunctions html Introduction html LanguageClasses html LinearMethodsList-class html MethodDefinition-class html MethodSupport html MethodWithNext-class html Methods html MethodsList-class html MethodsList html Methods_Details html Methods_for_Nongenerics html Methods_for_S3 html NextMethod html ObjectsWithPackage-class html RClassUtils html RMethodUtils html S3Part html S4groupGeneric html SClassExtension-class html StructureClasses html TraceClasses html as html callGeneric html canCoerce html cbind2 html className html classRepresentation-class html classesToAM html dotsMethods html evalSource html findClass html findMethods html fixPrevious html genericFunction-class html getClass html getMethod html getPackageName html hasArg html implicitGeneric html inheritedSlotNames html initialize-methods html is html isSealedMethod html languageEl html localRefClass html method.skeleton html methodUtilities html methods-defunct html methods-deprecated html methods-package html new html nonStructure-class html promptClass html promptMethods html refClass html removeMethod html representation html selectSuperClasses html setAs html setClass html setClassUnion html setGeneric html setGroupGeneric html setIs html setLoadActions html setMethod html setOldClass html setSClass html show html showMethods html signature-class html slot html stdRefClass html substituteDirect html testInheritedMethods html validObject html zBasicFunsList html converting help for package 'grid' Grid html absolute.size html arrow html calcStringMetric html current.viewport html dataViewport html depth html deviceLoc html drawDetails html editDetails html editViewport html explode html gEdit html gPath html getNames html gpar html grid-defunct html grid-internal html grid-package html grid.DLapply html grid.add html grid.bezier html grid.cap html grid.circle html grid.clip html grid.convert html grid.copy html grid.curve html grid.delay html grid.display.list html grid.draw html grid.edit html grid.force html grid.frame html grid.function html grid.get html grid.grab html grid.grep html grid.grill html grid.grob html grid.layout html grid.lines html grid.locator html grid.ls html grid.move.to html grid.newpage html grid.null html grid.pack html grid.path html grid.place html grid.plot.and.legend html grid.points html grid.polygon html grid.pretty html grid.raster html grid.record html grid.rect html grid.refresh html grid.remove html grid.reorder html grid.roundrect html grid.segments html grid.set html grid.show.layout html grid.show.viewport html grid.text html grid.xaxis html grid.xspline html grid.yaxis html grobCoords html grobName html grobWidth html grobX html legendGrob html makeContent html patterns html plotViewport html resolveRasterSize html showGrob html showViewport html stringWidth html unit html unit.c html unit.length html unit.pmin html unit.rep html unitType html valid.just html validDetails html viewport html viewports html vpPath html widthDetails html xDetails html xsplinePoints html converting help for package 'splines' asVector html backSpline html bs html interpSpline html ns html periodicSpline html polySpline html predict.bSpline html predict.bs html splineDesign html splineKnots html splineOrder html splines-package html xyVector html converting help for package 'stats4' coef-methods html confint-methods html logLik-methods html mle-class html mle html plot-methods html profile-methods html profile.mle-class html show-methods html stats4-package html summary-methods html summary.mle-class html update-methods html vcov-methods html converting help for package 'tcltk' TclInterface html TkCommands html TkWidgetcmds html TkWidgets html tclServiceMode html tcltk-defunct html tcltk-package html tkProgressBar html tkStartGUI html tk_choose.dir html tk_choose.files html tk_messageBox html tk_select.list html tkpager html converting help for package 'compiler' compile html converting help for package 'parallel' RngStream html clusterApply html detectCores html makeCluster html parallel-package html splitIndices html children html mcaffinity html mcfork html mclapply html mcparallel html pvec html make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended' begin installing recommended package MASS * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp3mEMcg/R.INSTALL397087997f8/MASS/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c MASS.c -o MASS.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lqs.c -o lqs.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp3mEMcg/R.INSTALL397087997f8/MASS/src' installing to /builddir/build/BUILD/R-4.1.2/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MASS' finding HTML links ... done Aids2 html Animals html Boston html Cars93 html Cushings html DDT html GAGurine html Insurance html MASS-internal html Melanoma html Null html OME html Pima.tr html Rabbit html Rubber html SP500 html Sitka html Sitka89 html Skye html Traffic html UScereal html UScrime html VA html abbey html accdeaths html addterm html anorexia html anova.negbin html area html bacteria html bandwidth.nrd html bcv html beav1 html beav2 html biopsy html birthwt html boxcox html cabbages html caith html cats html cement html chem html con2tr html confint html contr.sdif html coop html corresp html cov.rob html cov.trob html cpus html crabs html deaths html denumerate html dose.p html drivers html dropterm html eagles html epil html eqscplot html farms html fgl html fitdistr html forbes html fractions html galaxies html gamma.dispersion html gamma.shape.glm html gehan html genotype html geyser html gilgais html ginv html glm.convert html glm.nb html glmmPQL html hills html hist.scott html housing html huber html hubers html immer html isoMDS html kde2d html lda html ldahist html leuk html lm.gls html lm.ridge html loglm html loglm1 html logtrans html lqs html mammals html mca html mcycle html menarche html michelson html minn38 html motors html muscle html mvrnorm html negative.binomial html newcomb html nlschools html npk html npr1 html oats html painters html pairs.lda html parcoord html petrol html phones html plot.lda html plot.mca html plot.profile html polr html predict.glmmPQL html predict.lda html predict.lqs html predict.mca html predict.qda html profile.glm html qda html quine html rational html renumerate html rlm html rms.curv html rnegbin html road html rotifer html sammon html ships html shoes html shrimp html shuttle html snails html stdres html steam html stepAIC html stormer html studres html summary.loglm html summary.negbin html summary.rlm html survey html synth.tr html theta.md html topo html truehist html ucv html waders html whiteside html width.SJ html write.matrix html wtloss html ** building package indices ** testing if installed package can be loaded * DONE (MASS) Making 'packages.html' ... done begin installing recommended package lattice * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpLyNJMM/R.INSTALL399c64904889/lattice/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c threeDplot.c -o threeDplot.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpLyNJMM/R.INSTALL399c64904889/lattice/src' installing to /builddir/build/BUILD/R-4.1.2/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lattice' finding HTML links ... done Lattice html Rows html USMortality html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** testing if installed package can be loaded * DONE (lattice) Making 'packages.html' ... done begin installing recommended package Matrix * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c CHMfactor.c -o CHMfactor.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Csparse.c -o Csparse.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c TMatrix_as.c -o TMatrix_as.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Tsparse.c -o Tsparse.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Mutils.c -o Mutils.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chm_common.c -o chm_common.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cs.c -o cs.o cs.c: In function 'cs_qr': cs.c:1409:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] 1409 | csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai, | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cs_utils.c -o cs_utils.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dense.c -o dense.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgCMatrix.c -o dgCMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgTMatrix.c -o dgTMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeMatrix.c -o dgeMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpoMatrix.c -o dpoMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dppMatrix.c -o dppMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dsCMatrix.c -o dsCMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dsyMatrix.c -o dsyMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dspMatrix.c -o dspMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dtCMatrix.c -o dtCMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dtTMatrix.c -o dtTMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dtrMatrix.c -o dtrMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dtpMatrix.c -o dtpMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c factorizations.c -o factorizations.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ldense.c -o ldense.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgCMatrix.c -o lgCMatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sparseQR.c -o sparseQR.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c abIndex.c -o abIndex.o make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[5]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD/Source' make[5]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD/Source' make[5]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/SuiteSparse_config' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD' ( cd Lib ; make -f "/builddir/build/BUILD/R-4.1.2/etc/Makeconf" -f Makefile ) make[5]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD/Lib' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_add.c -o cholmod_add.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_band.c -o cholmod_band.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o In file included from ../Core/cholmod_change_factor.c:113: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 37 | double *Lx, *Lz ; | ^~ In file included from ../Core/cholmod_change_factor.c:115: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 37 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] 262 | Int nsuper, xsize, ssize ; | ^~~~~ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] 677 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] 677 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 676 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] 676 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] 824 | Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; | ^ ../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] 823 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~~ ../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] 823 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_common.c -o cholmod_common.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_copy.c -o cholmod_copy.o ../Core/cholmod_copy.c: In function 'cholmod_copy': ../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] 275 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ ../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] 275 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_dense.c -o cholmod_dense.o In file included from ../Core/cholmod_dense.c:45: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ In file included from ../Core/cholmod_dense.c:47: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ In file included from ../Core/cholmod_dense.c:49: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/cholmod_dense.c: In function 'cholmod_eye': ../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 300 | Int i, n, nz ; | ^~ ../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 299 | double *Xx, *Xz ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_error.c -o cholmod_error.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_memory.c -o cholmod_memory.o ../Core/cholmod_memory.c: In function 'cholmod_malloc': ../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable] 121 | size_t s ; | ^ ../Core/cholmod_memory.c: In function 'cholmod_realloc': ../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable] 311 | size_t s ; | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_sparse.c -o cholmod_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse': ../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 485 | Int p, pend, j, ncol, packed, nzmax, nz, xtype ; | ^~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_transpose.c -o cholmod_transpose.o In file included from ../Core/cholmod_transpose.c:121: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:123: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:125: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:128: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:130: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ In file included from ../Core/cholmod_transpose.c:133: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_triplet.c -o cholmod_triplet.o In file included from ../Core/cholmod_triplet.c:105: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:107: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:109: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse': ../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 342 | Int i, j, p, k, stype, nrow, ncol, nz, ok ; | ^~ ../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] 341 | Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Core/cholmod_version.c -o cholmod_version.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Check/cholmod_check.c -o cholmod_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] 204 | Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; | ^~~~~~~~~~ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 950 | Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; | ^~ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1497:9: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] 1497 | ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; | ^~~ ../Check/cholmod_check.c:1495:16: warning: variable 'precise' set but not used [-Wunused-but-set-variable] 1495 | count, precise, init_print, ilast, lnz, head, tail, jprev, plast, | ^~~~~~~ ../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] 1494 | Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, | ^~~~~~~~ ../Check/cholmod_check.c: In function 'check_factor.constprop': ../Check/cholmod_check.c:83:9: warning: 'psxend' may be used uninitialized [-Wmaybe-uninitialized] 83 | SuiteSparse_config.printf_func (format, arg) ; \ | ^~~~~~~~~~~~~~~~~~ ../Check/cholmod_check.c:1497:14: note: 'psxend' was declared here 1497 | ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; | ^~~~~~ ../Check/cholmod_check.c:1496:62: warning: 'psx' may be used uninitialized [-Wmaybe-uninitialized] 1496 | jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, | ^~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Check/cholmod_read.c -o cholmod_read.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Check/cholmod_write.c -o cholmod_write.o ../Check/cholmod_write.c: In function 'cholmod_write_sparse': ../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] 366 | Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2': ../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] 419 | Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, | ^~~~ ../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] 416 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ ../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] 416 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p': ../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] 111 | Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:161: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:163: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:165: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ In file included from ../Cholesky/cholmod_rowfac.c:169: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:171: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:173: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o In file included from ../Cholesky/cholmod_solve.c:63: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 61 | double *Lx, *Yx, *Yz ; | ^~ In file included from ../Cholesky/cholmod_solve.c:66: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 61 | double *Lx, *Yx, *Yz ; | ^~ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] 334 | Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:44: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 52 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:46: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 52 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:48: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 52 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Modify/cholmod_updown.c -o cholmod_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_updown_mask2': ../Modify/cholmod_updown.c:433:40: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] 433 | *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; | ^~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:82: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 756 | #pragma omp parallel for private ( j, i, px, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable] 116 | tail, nscol_new = 0; | ^~~~ ../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable] 113 | pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1, | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable] 111 | *Previous; | ^~~~~~~~ ../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ In file included from ../Supernodal/cholmod_super_numeric.c:84: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 756 | #pragma omp parallel for private ( j, i, px, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable] 116 | tail, nscol_new = 0; | ^~~~ ../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable] 113 | pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1, | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable] 111 | *Previous; | ^~~~~~~~ ../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ In file included from ../Supernodal/cholmod_super_numeric.c:86: ../Supernodal/t_cholmod_super_numeric.c: In function 'z_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 756 | #pragma omp parallel for private ( j, i, px, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable] 116 | tail, nscol_new = 0; | ^~~~ ../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable] 113 | pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1, | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable] 111 | *Previous; | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:26: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 30 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 238 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ In file included from ../Supernodal/cholmod_super_solve.c:28: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 30 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 238 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:562:21: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] 562 | Int totsize ; | ^~~~~~~ ../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable] 185 | double max_fraction; | ^~~~~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable] 184 | const char* env_max_fraction; | ^~~~~~~~~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable] 183 | size_t max_bytes; | ^~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable] 182 | const char* env_max_bytes; | ^~~~~~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable] 181 | const char* env_use_gpu; | ^~~~~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o ../Core/cholmod_add.c:34:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 34 | double alpha [2], /* scale factor for A */ | ~~~~~~~^~~~~~~~~ In file included from ../Core/cholmod_add.c:27: ../Include/cholmod_core.h:1582:68: note: previously declared as 'double *' 1582 | cholmod_sparse *cholmod_l_add (cholmod_sparse *, cholmod_sparse *, double *, | ^~~~~~~~ ../Core/cholmod_add.c:35:12: warning: argument 4 of type 'double[2]' with mismatched bound [-Warray-parameter=] 35 | double beta [2], /* scale factor for B */ | ~~~~~~~^~~~~~~~ ../Include/cholmod_core.h:1583:5: note: previously declared as 'double *' 1583 | double *, int, int, cholmod_common *) ; | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o In file included from ../Core/cholmod_change_factor.c:113: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 37 | double *Lx, *Lz ; | ^~ In file included from ../Core/cholmod_change_factor.c:115: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 37 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] 262 | Int nsuper, xsize, ssize ; | ^~~~~ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] 677 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] 677 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 676 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] 676 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] 824 | Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; | ^ ../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] 823 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~~ ../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] 823 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o ../Core/cholmod_copy.c: In function 'cholmod_l_copy': ../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] 275 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ ../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] 275 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o In file included from ../Core/cholmod_dense.c:45: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ In file included from ../Core/cholmod_dense.c:47: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ In file included from ../Core/cholmod_dense.c:49: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 27 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 133 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 226 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/cholmod_dense.c: In function 'cholmod_l_eye': ../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 300 | Int i, n, nz ; | ^~ ../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 299 | double *Xx, *Xz ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o ../Core/cholmod_memory.c: In function 'cholmod_l_malloc': ../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable] 121 | size_t s ; | ^ ../Core/cholmod_memory.c: In function 'cholmod_l_realloc': ../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable] 311 | size_t s ; | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse': ../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 485 | Int p, pend, j, ncol, packed, nzmax, nz, xtype ; | ^~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o In file included from ../Core/cholmod_transpose.c:121: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:123: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:125: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:128: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 42 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 139 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:130: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ In file included from ../Core/cholmod_transpose.c:133: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 44 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 43 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 140 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o In file included from ../Core/cholmod_triplet.c:105: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:107: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:109: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 28 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse': ../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 342 | Int i, j, p, k, stype, nrow, ncol, nz, ok ; | ^~ ../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] 341 | Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] 204 | Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; | ^~~~~~~~~~ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 950 | Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; | ^~ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1497:9: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] 1497 | ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; | ^~~ ../Check/cholmod_check.c:1495:16: warning: variable 'precise' set but not used [-Wunused-but-set-variable] 1495 | count, precise, init_print, ilast, lnz, head, tail, jprev, plast, | ^~~~~~~ ../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] 1494 | Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, | ^~~~~~~~ ../Check/cholmod_check.c: In function 'check_factor.constprop': ../Check/cholmod_check.c:83:9: warning: 'psxend' may be used uninitialized [-Wmaybe-uninitialized] 83 | SuiteSparse_config.printf_func (format, arg) ; \ | ^~~~~~~~~~~~~~~~~~ ../Check/cholmod_check.c:1497:14: note: 'psxend' was declared here 1497 | ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; | ^~~~~~ ../Check/cholmod_check.c:1496:62: warning: 'psx' may be used uninitialized [-Wmaybe-uninitialized] 1496 | jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, | ^~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o ../Check/cholmod_write.c: In function 'cholmod_l_write_sparse': ../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] 366 | Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2': ../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] 419 | Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, | ^~~~ ../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] 416 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ ../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] 416 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o ../Cholesky/cholmod_factorize.c:101:12: warning: argument 2 of type 'double[2]' with mismatched bound [-Warray-parameter=] 101 | double beta [2], /* factorize beta*I+A or beta*I+A'*A */ | ~~~~~~~^~~~~~~~ In file included from ../Cholesky/cholmod_factorize.c:58: ../Include/cholmod_cholesky.h:168:46: note: previously declared as 'double *' 168 | int cholmod_l_factorize_p (cholmod_sparse *, double *, SuiteSparse_long *, | ^~~~~~~~ ../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p': ../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] 111 | Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:161: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:163: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:165: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ In file included from ../Cholesky/cholmod_rowfac.c:169: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:171: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 46 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:173: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 50 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/cholmod_rowfac.c: At top level: ../Cholesky/cholmod_rowfac.c:577:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 577 | double beta [2], /* factorize beta*I+A or beta*I+AA' */ | ~~~~~~~^~~~~~~~ In file included from ../Cholesky/cholmod_rowfac.c:103: ../Include/cholmod_cholesky.h:387:59: note: previously declared as 'double *' 387 | int cholmod_l_rowfac (cholmod_sparse *, cholmod_sparse *, double *, size_t, | ^~~~~~~~ ../Cholesky/cholmod_rowfac.c:602:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 602 | double beta [2], /* factorize beta*I+A or beta*I+AA' */ | ~~~~~~~^~~~~~~~ ../Include/cholmod_cholesky.h:413:64: note: previously declared as 'double *' 413 | int cholmod_l_rowfac_mask (cholmod_sparse *, cholmod_sparse *, double *, size_t, | ^~~~~~~~ ../Cholesky/cholmod_rowfac.c:629:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 629 | double beta [2], /* factorize beta*I+A or beta*I+AA' */ | ~~~~~~~^~~~~~~~ ../Include/cholmod_cholesky.h:434:65: note: previously declared as 'double *' 434 | int cholmod_l_rowfac_mask2 (cholmod_sparse *, cholmod_sparse *, double *, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o In file included from ../Cholesky/cholmod_solve.c:63: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 61 | double *Lx, *Yx, *Yz ; | ^~ In file included from ../Cholesky/cholmod_solve.c:66: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 61 | double *Lx, *Yx, *Yz ; | ^~ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] 334 | Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; | ^~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:44: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 52 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:46: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 52 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 49 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:48: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 52 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/cholmod_sdmult.c: At top level: ../MatrixOps/cholmod_sdmult.c:59:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 59 | double alpha [2], /* scale factor for A */ | ~~~~~~~^~~~~~~~~ In file included from ../MatrixOps/cholmod_sdmult.c:36: ../Include/cholmod_matrixops.h:143:46: note: previously declared as 'double *' 143 | int cholmod_l_sdmult (cholmod_sparse *, int, double *, double *, | ^~~~~~~~ ../MatrixOps/cholmod_sdmult.c:60:12: warning: argument 4 of type 'double[2]' with mismatched bound [-Warray-parameter=] 60 | double beta [2], /* scale factor for Y */ | ~~~~~~~^~~~~~~~ ../Include/cholmod_matrixops.h:143:56: note: previously declared as 'double *' 143 | int cholmod_l_sdmult (cholmod_sparse *, int, double *, double *, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o ../Modify/cholmod_rowadd.c:72:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 72 | double bk [2], /* kth entry of the right-hand-side b */ | ~~~~~~~^~~~~~ In file included from ../Modify/cholmod_rowadd.c:24: ../Include/cholmod_modify.h:215:55: note: previously declared as 'double *' 215 | int cholmod_l_rowadd_solve (size_t, cholmod_sparse *, double *, | ^~~~~~~~ ../Modify/cholmod_rowadd.c:116:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 116 | double bk [2], /* kth entry of the right hand side, b */ | ~~~~~~~^~~~~~ ../Include/cholmod_modify.h:241:54: note: previously declared as 'double *' 241 | int cholmod_l_rowadd_mark (size_t, cholmod_sparse *, double *, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o ../Modify/cholmod_rowdel.c:72:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 72 | double yk [2], /* kth entry in the solution to A*y=b */ | ~~~~~~~^~~~~~ In file included from ../Modify/cholmod_rowdel.c:25: ../Include/cholmod_modify.h:294:55: note: previously declared as 'double *' 294 | int cholmod_l_rowdel_solve (size_t, cholmod_sparse *, double *, | ^~~~~~~~ ../Modify/cholmod_rowdel.c:104:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 104 | double yk [2], /* kth entry in the solution to A*y=b */ | ~~~~~~~^~~~~~ ../Include/cholmod_modify.h:320:54: note: previously declared as 'double *' 320 | int cholmod_l_rowdel_mark (size_t, cholmod_sparse *, double *, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask2': ../Modify/cholmod_updown.c:433:40: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] 433 | *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; | ^~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:82: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 756 | #pragma omp parallel for private ( j, i, px, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable] 116 | tail, nscol_new = 0; | ^~~~ ../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable] 113 | pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1, | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable] 111 | *Previous; | ^~~~~~~~ ../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ In file included from ../Supernodal/cholmod_super_numeric.c:84: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 756 | #pragma omp parallel for private ( j, i, px, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable] 116 | tail, nscol_new = 0; | ^~~~ ../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable] 113 | pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1, | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable] 111 | *Previous; | ^~~~~~~~ ../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 108 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ In file included from ../Supernodal/cholmod_super_numeric.c:86: ../Supernodal/t_cholmod_super_numeric.c: In function 'z_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \ | ../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 756 | #pragma omp parallel for private ( j, i, px, q ) \ | ../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable] 116 | tail, nscol_new = 0; | ^~~~ ../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable] 113 | pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1, | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable] 111 | *Previous; | ^~~~~~~~ ../Supernodal/cholmod_super_numeric.c: At top level: ../Supernodal/cholmod_super_numeric.c:102:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=] 102 | double beta [2], /* beta*I is added to diagonal of matrix to factorize */ | ~~~~~~~^~~~~~~~ In file included from ../Supernodal/cholmod_super_numeric.c:60: ../Include/cholmod_supernodal.h:120:66: note: previously declared as 'double *' 120 | int cholmod_l_super_numeric (cholmod_sparse *, cholmod_sparse *, double *, | ^~~~~~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:26: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 30 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 238 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ In file included from ../Supernodal/cholmod_super_solve.c:28: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 30 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable] 238 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:562:21: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] 562 | Int totsize ; | ^~~~~~~ ../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable] 185 | double max_fraction; | ^~~~~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable] 184 | const char* env_max_fraction; | ^~~~~~~~~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable] 183 | size_t max_bytes; | ^~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable] 182 | const char* env_max_bytes; | ^~~~~~~~~~~~~ ../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable] 181 | const char* env_use_gpu; | ^~~~~~~~~~~ ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD' ( cd Source ; make -f "/builddir/build/BUILD/R-4.1.2/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD/Source' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c colamd.c -o colamd.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd.o colamd_l.o make[5]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD' ( cd Source ; make -f "/builddir/build/BUILD/R-4.1.2/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD/Source' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o make[5]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/SuiteSparse_config' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src/SuiteSparse_config' gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -lflexiblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpsMvlx9/R.INSTALL39c81338bdde/Matrix/src' installing to /builddir/build/BUILD/R-4.1.2/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices converting help for package 'Matrix' finding HTML links ... done BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html LU-class html Matrix-class html Matrix html MatrixClass html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur html SparseM-conv html Subassign-methods html TsparseMatrix-class html USCounties html Xtrct-methods html abIndex-class html abIseq html all-methods html all.equal-methods html atomicVector-class html band html bandSparse html bdiag html boolean-matprod html cBind html chol html chol2inv-methods html colSums html compMatrix-class html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-def html dtpMatrix-class html dtrMatrix-class html expand html expm html externalFormats html facmul html forceSymmetric html formatSparseM html generalMatrix-class html graph2T html image-methods html indMatrix-class html index-class html invPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-classes html lsyMatrix-class html ltrMatrix-class html lu html mat2triplet html matrix-products html nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero html norm html nsparseMatrix-classes html nsyMatrix-class html ntrMatrix-class html number-class html pMatrix-class html printSpMatrix html qr-methods html rankMatrix html rcond html rep2abI html replValue-class html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html symmetricMatrix-class html symmpart html triangularMatrix-class html uniqTsparse html unpack html unused-classes html updown html wrld_1deg html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) Making 'packages.html' ... done begin installing recommended package nlme * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpYdeSZQ/R.INSTALL3bcf6a9d3308/nlme/src' gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c chol.f -o chol.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c corStruct.c -o corStruct.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gnls.c -o gnls.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matrix.c -o matrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nlOptimizer.c -o nlOptimizer.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nlme.c -o nlme.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nlmefit.c -o nlmefit.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pdMat.c -o pdMat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pythag.c -o pythag.o gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c rs.f -o rs.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpYdeSZQ/R.INSTALL3bcf6a9d3308/nlme/src' installing to /builddir/build/BUILD/R-4.1.2/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nlme' finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varConstProp html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded * DONE (nlme) Making 'packages.html' ... done begin installing recommended package survival * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpYYwzM0/R.INSTALL3c167dbcd303/survival/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agexact.c -o agexact.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agfit4.c -o agfit4.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agfit5.c -o agfit5.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agmart.c -o agmart.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agmart3.c -o agmart3.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agscore2.c -o agscore2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agsurv3.c -o agsurv3.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agsurv4.c -o agsurv4.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agsurv5.c -o agsurv5.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cdecomp.c -o cdecomp.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chinv2.c -o chinv2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chinv3.c -o chinv3.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholesky2.c -o cholesky2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholesky3.c -o cholesky3.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholesky5.c -o cholesky5.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chsolve2.c -o chsolve2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chsolve3.c -o chsolve3.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chsolve5.c -o chsolve5.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c collapse.c -o collapse.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c concordance1.c -o concordance1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c concordance3.c -o concordance3.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c concordance5.c -o concordance5.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cox_Rcallback.c -o cox_Rcallback.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxcount1.c -o coxcount1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxdetail.c -o coxdetail.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxexact.c -o coxexact.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxfit5.c -o coxfit5.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxfit6.c -o coxfit6.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxmart.c -o coxmart.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxmart2.c -o coxmart2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxph_wtest.c -o coxph_wtest.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsafe.c -o coxsafe.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxscho.c -o coxscho.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxscore2.c -o coxscore2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsurv1.c -o coxsurv1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsurv2.c -o coxsurv2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dmatrix.c -o dmatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c doloop.c -o doloop.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c finegray.c -o finegray.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gchol.c -o gchol.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c multicheck.c -o multicheck.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c norisk.c -o norisk.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pyears1.c -o pyears1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pyears2.c -o pyears2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pyears3b.c -o pyears3b.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pystep.c -o pystep.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survConcordance.c -o survConcordance.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survdiff2.c -o survdiff2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfit4.c -o survfit4.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfitci.c -o survfitci.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfitkm.c -o survfitkm.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfitresid.c -o survfitresid.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survpenal.c -o survpenal.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survreg6.c -o survreg6.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survreg7.c -o survreg7.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survregc1.c -o survregc1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survregc2.c -o survregc2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survsplit.c -o survsplit.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tmerge.c -o tmerge.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c zph1.c -o zph1.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c zph2.c -o zph2.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o dmatrix.o doloop.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpYYwzM0/R.INSTALL3c167dbcd303/survival/src' installing to /builddir/build/BUILD/R-4.1.2/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survival' finding HTML links ... done Surv html Surv2 html Surv2data html Survmethods html aareg html aeqSurv html aggregate.survfit html agreg.fit html aml html anova.coxph html attrassign html basehaz html bladder html blogit html cch html cgd html cgd0 html cipoisson html clogit html cluster html colon html concordance html concordancefit html cox.zph html coxph html coxph.control html coxph.detail html coxph.object html coxph.wtest html coxsurv.fit html diabetic html dsurvreg html finegray html flchain html frailty html gbsg html heart html is.ratetable html kidney html levels.Surv html lines.survfit html logLik.coxph html logan html lung html mgus html mgus2 html model.frame.coxph html model.matrix.coxph html myeloid html myeloma html nafld html neardate html nsk html nwtco html ovarian html pbc html pbcseq html plot.aareg html plot.cox.zph html plot.survfit html predict.coxph html predict.survreg html print.aareg html print.summary.coxph html print.summary.survexp html print.summary.survfit html print.survfit html pseudo html pspline html pyears html quantile.survfit html ratetable html ratetableDate html rats html rats2 html reliability html residuals.coxph html residuals.survfit html residuals.survreg html retinopathy html rhDNase html ridge html rotterdam html royston html rttright html solder html stanford2 html statefig html strata html summary.aareg html summary.coxph html summary.pyears html summary.survexp html summary.survfit html survSplit html survcheck html survdiff html survexp html survexp.fit html survexp.object html survexp.us html survfit html survfit.coxph html survfit.formula html survfit.matrix html survfit.object html survfit0 html survfitcoxph.fit html survival-deprecated html survival-internal html survobrien html survreg html survreg.control html survreg.distributions html survreg.object html survregDtest html tcut html tmerge html tobin html transplant html udca html untangle.specials html uspop2 html vcov.coxph html veteran html xtfrm.Surv html yates html yates_setup html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) Making 'packages.html' ... done begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'boot' finding HTML links ... done EEF.profile html Imp.Estimates html abc.ci html acme html aids html aircondit html amis html aml html beaver html bigcity html boot-practicals html boot html boot.array html boot.ci html brambles html breslow html calcium html cane html capability html catsM html cav html cd4 html cd4.nested html censboot html channing html claridge html cloth html co.transfer html coal html control html corr html cum3 html cv.glm html darwin html dogs html downs.bc html ducks html empinf html envelope html exp.tilt html fir html freq.array html frets html glm.diag html glm.diag.plots html gravity html hirose html imp.weights html inv.logit html islay html jack.after.boot html k3.linear html linear.approx html lines.saddle.distn html logit html manaus html melanoma html motor html neuro html nitrofen html nodal html norm.ci html nuclear html paulsen html plot.boot html poisons html polar html print.boot html print.bootci html print.saddle.distn html print.simplex html remission html saddle html saddle.distn html saddle.distn.object html salinity html simplex html simplex.object html smooth.f html sunspot html survival html tau html tilt.boot html tsboot html tuna html urine html var.linear html wool html ** building package indices ** testing if installed package can be loaded * DONE (boot) Making 'packages.html' ... done begin installing recommended package cluster * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmptBluGa/R.INSTALL3d1763641d6c/cluster/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clara.c -o clara.o gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c daisy.f -o daisy.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dysta.f -o dysta.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fanny.c -o fanny.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mona.c -o mona.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pam.c -o pam.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sildist.c -o sildist.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c spannel.c -o spannel.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c twins.c -o twins.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmptBluGa/R.INSTALL3d1763641d6c/cluster/src' installing to /builddir/build/BUILD/R-4.1.2/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cluster' finding HTML links ... done agnes html agnes.object html agriculture html animals html bannerplot html chorSub html clara html clara.object html clusGap html clusplot.default html clusplot.partition html cluster-internal html coef.hclust html daisy html diana html dissimilarity.object html ellipsoidhull html fanny html fanny.object html flower html lower.to.upper.tri.inds html mona html mona.object html pam html pam.object html partition.object html plantTraits html plot.agnes html plot.diana html plot.mona html plot.partition html pltree html pluton html predict.ellipsoid html print.agnes html print.clara html print.diana html print.dissimilarity html print.fanny html print.mona html print.pam html ruspini html silhouette html sizeDiss html summary.agnes html summary.clara html summary.diana html summary.mona html summary.pam html twins.object html volume.ellipsoid html votes.repub html xclara html ** building package indices ** testing if installed package can be loaded * DONE (cluster) Making 'packages.html' ... done begin installing recommended package codetools * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'codetools' finding HTML links ... done checkUsage html codetools html findGlobals html showTree html ** building package indices ** testing if installed package can be loaded * DONE (codetools) Making 'packages.html' ... done begin installing recommended package foreign * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp24ApjK/R.INSTALL3d7c65016ebf/foreign/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c R_systat.c -o R_systat.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rdbfread.c -o Rdbfread.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rdbfwrite.c -o Rdbfwrite.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c SASxport.c -o SASxport.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c avl.c -o avl.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbfopen.c -o dbfopen.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c file-handle.c -o file-handle.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c format.c -o format.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c minitab.c -o minitab.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pfm-read.c -o pfm-read.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sfm-read.c -o sfm-read.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c spss.c -o spss.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stataread.c -o stataread.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp24ApjK/R.INSTALL3d7c65016ebf/foreign/src' installing to /builddir/build/BUILD/R-4.1.2/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreign' finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded * DONE (foreign) Making 'packages.html' ... done begin installing recommended package KernSmooth * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp1oinpl/R.INSTALL3dcc74d664b4/KernSmooth/src' gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c blkest.f -o blkest.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c cp.f -o cp.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dgedi.f -o dgedi.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dgefa.f -o dgefa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c dgesl.f -o dgesl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c linbin.f -o linbin.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c linbin2D.f -o linbin2D.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c locpoly.f -o locpoly.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c rlbin.f -o rlbin.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c sdiag.f -o sdiag.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -m64 -fno-optimize-sibling-calls -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -c sstdiag.f -o sstdiag.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp1oinpl/R.INSTALL3dcc74d664b4/KernSmooth/src' installing to /builddir/build/BUILD/R-4.1.2/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'KernSmooth' finding HTML links ... done bkde html bkde2D html bkfe html dpih html dpik html dpill html locpoly html ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) Making 'packages.html' ... done begin installing recommended package rpart * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpo2Gw4x/R.INSTALL3e16517f998f/rpart/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c anova.c -o anova.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c anovapred.c -o anovapred.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c branch.c -o branch.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bsplit.c -o bsplit.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose_surg.c -o choose_surg.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fix_cp.c -o fix_cp.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c free_tree.c -o free_tree.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gini.c -o gini.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c graycode.c -o graycode.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c insert_split.c -o insert_split.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c make_cp_list.c -o make_cp_list.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c make_cp_table.c -o make_cp_table.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mysort.c -o mysort.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nodesplit.c -o nodesplit.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c partition.c -o partition.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c poisson.c -o poisson.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pred_rpart.c -o pred_rpart.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c print_tree.c -o print_tree.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpart.c -o rpart.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpart_callback.c -o rpart_callback.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpartexp.c -o rpartexp.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpartexp2.c -o rpartexp2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpcountup.c -o rpcountup.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpmatrix.c -o rpmatrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rundown.c -o rundown.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rundown2.c -o rundown2.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c surrogate.c -o surrogate.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c usersplit.c -o usersplit.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xpred.c -o xpred.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xval.c -o xval.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmpo2Gw4x/R.INSTALL3e16517f998f/rpart/src' installing to /builddir/build/BUILD/R-4.1.2/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rpart' finding HTML links ... done car.test.frame html car90 html cu.summary html kyphosis html labels.rpart html meanvar.rpart html na.rpart html path.rpart html plot.rpart html plotcp html post.rpart html predict.rpart html print.rpart html printcp html prune.rpart html residuals.rpart html rpart-internal html rpart html rpart.control html rpart.exp html rpart.object html rsq.rpart html snip.rpart html solder.balance html stagec html summary.rpart html text.rpart html xpred.rpart html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) Making 'packages.html' ... done begin installing recommended package class * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpqMHfIw/R.INSTALL3e99a4ad7ca/class/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c class.c -o class.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o class.so class.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpqMHfIw/R.INSTALL3e99a4ad7ca/class/src' installing to /builddir/build/BUILD/R-4.1.2/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'class' finding HTML links ... done SOM html batchSOM html condense html knn html knn.cv html knn1 html lvq1 html lvq2 html lvq3 html lvqinit html lvqtest html multiedit html olvq1 html reduce.nn html somgrid html ** building package indices ** testing if installed package can be loaded * DONE (class) Making 'packages.html' ... done begin installing recommended package nnet * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpBibw3N/R.INSTALL3ec239b254fe/nnet/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nnet.c -o nnet.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nnet.so nnet.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpBibw3N/R.INSTALL3ec239b254fe/nnet/src' installing to /builddir/build/BUILD/R-4.1.2/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnet' finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded * DONE (nnet) Making 'packages.html' ... done begin installing recommended package spatial * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpgMYdmx/R.INSTALL3eeb60110be1/spatial/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c krc.c -o krc.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pps.c -o pps.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpgMYdmx/R.INSTALL3eeb60110be1/spatial/src' installing to /builddir/build/BUILD/R-4.1.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spatial' finding HTML links ... done Kaver html Kenvl html Kfn html Psim html SSI html Strauss html anova.trls html correlogram html expcov html ppgetregion html ppinit html pplik html ppregion html predict.trls html prmat html semat html surf.gls html surf.ls html trls.influence html trmat html variogram html ** building package indices ** testing if installed package can be loaded * DONE (spatial) Making 'packages.html' ... done begin installing recommended package mgcv * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpKs8HrT/R.INSTALL3f1a6de0d441/mgcv/src' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxph.c -o coxph.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c davies.c -o davies.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c discrete.c -o discrete.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gdi.c -o gdi.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c magic.c -o magic.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mat.c -o mat.o mat.c: In function 'Rlanczos': mat.c:3623:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 3623 | for (i=0;i< *n+1;i++) if (q[i]) FREE(q[i]);FREE(q); | ^~~ In file included from mat.c:58: mgcv.h:62:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 62 | #define FREE R_chk_free | ^~~~~~~~~~ mat.c:3623:46: note: in expansion of macro 'FREE' 3623 | for (i=0;i< *n+1;i++) if (q[i]) FREE(q[i]);FREE(q); | ^~~~ gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matrix.c -o matrix.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mgcv.c -o mgcv.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c misc.c -o misc.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mvn.c -o mvn.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qp.c -o qp.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c soap.c -o soap.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sparse-smooth.c -o sparse-smooth.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sparse.c -o sparse.o gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tprs.c -o tprs.o gcc -m64 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-4.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpKs8HrT/R.INSTALL3f1a6de0d441/mgcv/src' installing to /builddir/build/BUILD/R-4.1.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mgcv' finding HTML links ... done Beta html FFdes html Predict.matrix html Predict.matrix.cr.smooth html Predict.matrix.soap.film html Rrank html Sl.initial.repara html Sl.repara html Sl.setup html Tweedie html XWXd html anova.gam html bam html bam.update html bandchol html blas.thread.test html bug.reports.mgcv html cSplineDes html chol.down html choose.k html columb html concurvity html coxph html coxpht html dDeta html exclude.too.far html extract.lme.cov html family.mgcv html fix.family.link html fixDependence html formXtViX html formula.gam html fs.test html full.score html gam html gam.check html gam.control html gam.convergence html gam.fit html gam.fit3 html gam.fit5.post.proc html gam.mh html gam.models html gam.outer html gam.reparam html gam.scale html gam.selection html gam.side html gam.vcomp html gam2objective html gamObject html gamSim html gamlss.etamu html gamlss.gH html gamm html gammals html gaulss html get.var html gevlss html ginla html gumbls html identifiability html in.out html inSide html influence.gam html initial.sp html interpret.gam html jagam html k.check html ldTweedie html ldetS html linear.functional.terms html logLik.gam html ls.size html magic html magic.post.proc html mgcv-FAQ html mgcv-package html mgcv-parallel html mini.roots html missing.data html model.matrix.gam html mono.con html mroot html multinom html mvn html negbin html new.name html notExp html notExp2 html null.space.dimension html ocat html one.se.rule html pcls html pdIdnot html pdTens html pen.edf html place.knots html plot.gam html polys.plot html predict.bam html predict.gam html print.gam html psum.chisq html qq.gam html rTweedie html random.effects html residuals.gam html rig html rmvn html s html scat html sdiag html shash html single.index html slanczos html smooth.construct html smooth.construct.ad.smooth.spec html smooth.construct.bs.smooth.spec html smooth.construct.cr.smooth.spec html smooth.construct.ds.smooth.spec html smooth.construct.fs.smooth.spec html smooth.construct.gp.smooth.spec html smooth.construct.mrf.smooth.spec html smooth.construct.ps.smooth.spec html smooth.construct.re.smooth.spec html smooth.construct.so.smooth.spec html smooth.construct.sos.smooth.spec html smooth.construct.t2.smooth.spec html smooth.construct.tensor.smooth.spec html smooth.construct.tp.smooth.spec html smooth.info html smooth.terms html smooth2random html smoothCon html sp.vcov html spasm.construct html step.gam html summary.gam html t2 html te html tensor.prod.model.matrix html totalPenaltySpace html trichol html trind.generator html twlss html uniquecombs html vcov.gam html vis.gam html ziP html ziplss html ** building package indices ** testing if installed package can be loaded * DONE (mgcv) Making 'packages.html' ... done make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... building/updating vignettes for package 'stats' ... processing 'reshape.Rnw' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2' configuring Java ... Java interpreter : /usr/bin/java Java version : 17.0.2 Java home path : /usr/lib/jvm/java-17-openjdk-17.0.2.0.8-666.fc36.x86_64 Java compiler : not present Java headers gen.: Java archive tool: trying to compile and link a JNI program detected JNI cpp flags : detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm make[2]: Entering directory '/tmp/Rjavareconf.Ina6FC' gcc -m64 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c conftest.c -o conftest.o conftest.c:1:10: fatal error: jni.h: No such file or directory 1 | #include | ^~~~~~~ compilation terminated. make[2]: *** [/builddir/build/BUILD/R-4.1.2/etc/Makeconf:168: conftest.o] Error 1 make[2]: Leaving directory '/tmp/Rjavareconf.Ina6FC' Unable to compile a JNI program JAVA_HOME : /usr/lib/jvm/java-17-openjdk-17.0.2.0.8-666.fc36.x86_64 Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /builddir/build/BUILD/R-4.1.2 Done. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2' + cd src/nmath/standalone + make (cd ../../include; make Rmath.h) make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include' Copying source files make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone' gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.o gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone' gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.lo gcc -m64 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c std_unif.c -o std_unif.lo gcc -m64 -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone' + make pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... 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Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'foreign' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'KernSmooth' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'rpart' ... Converting parsed Rd's to LaTeX .. collecting LaTeX docs for package 'class' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'nnet' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'spatial' ... Converting parsed Rd's to LaTeX .. collecting LaTeX docs for package 'mgcv' ... Converting parsed Rd's to LaTeX ............... PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-05-07> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv e/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] [1] [2] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1567--1573 [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 2492--2494 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2495--2500 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2495--2500 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Underfull \vbox (badness 10000) has occurred while \output is active [52] [53] [54] [55] [56] [57] [58] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] Underfull \hbox (badness 2521) in paragraph at lines 5180--5182 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] [97] [98] [99] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 7020--7023 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [103] [104] Underfull \hbox (badness 6063) in paragraph at lines 7202--7208 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [105] Underfull \hbox (badness 1303) in paragraph at lines 7264--7271 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the Underfull \hbox (badness 2111) in paragraph at lines 7275--7280 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [106] [107] Underfull \vbox (badness 10000) has occurred while \output is active [108] [109] [110] Underfull \hbox (badness 1077) in paragraph at lines 7593--7599 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7593--7599 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [111] [112] [113] [114] [115] Underfull \hbox (badness 2096) in paragraph at lines 7948--7952 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [116] [117] Underfull \hbox (badness 2351) in paragraph at lines 8062--8065 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [118] [119] [120] [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 8388--8399 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] Underfull \hbox (badness 1629) in paragraph at lines 8839--8851 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 6396) in paragraph at lines 11228--11236 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11228--11236 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 4569) in paragraph at lines 12377--12381 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12377--12381 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] Underfull \hbox (badness 2253) in paragraph at lines 14062--14064 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [201] Underfull \hbox (badness 1565) in paragraph at lines 14138--14142 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [202] Underfull \hbox (badness 4927) in paragraph at lines 14182--14184 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [203] Underfull \hbox (badness 3148) in paragraph at lines 14284--14289 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [204] Underfull \hbox (badness 1466) in paragraph at lines 14331--14334 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [205] [206] Underfull \hbox (badness 10000) in paragraph at lines 14458--14462 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14469--14472 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [207] [208] [209] [210] Underfull \hbox (badness 3965) in paragraph at lines 14766--14770 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] Underfull \hbox (badness 4429) in paragraph at lines 15546--15549 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [223] Underfull \hbox (badness 10000) in paragraph at lines 15652--15654 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15652--15654 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15674--15679 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15674--15679 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15686--15690 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15686--15690 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [224] Underfull \hbox (badness 2035) in paragraph at lines 15725--15729 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [225] Underfull \vbox (badness 10000) has occurred while \output is active [226] [227] [228] [229] [230] [231] [232] [233] Underfull \hbox (badness 2452) in paragraph at lines 16338--16342 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16338--16342 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [234] [235] [236] Underfull \hbox (badness 1092) in paragraph at lines 16511--16516 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [237] [238] [239] Underfull \hbox (badness 6741) in paragraph at lines 16764--16768 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [240] [241] [242] [243] [244] [245] [246] [247] [248] Underfull \vbox (badness 10000) has occurred while \output is active [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] Underfull \hbox (badness 1478) in paragraph at lines 18113--18116 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [259] [260] [261] Underfull \hbox (badness 10000) in paragraph at lines 18381--18383 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [262] [263] [264] [265] [266] [267] [268] [269] [270] Underfull \hbox (badness 1442) in paragraph at lines 18980--18982 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [271] [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19311--19317 [276] [277] [278] Underfull \hbox (badness 1248) in paragraph at lines 19556--19559 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [279] [280] [281] [282] Underfull \hbox (badness 4739) in paragraph at lines 19819--19821 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [283] [284] [285] [286] Underfull \hbox (badness 1603) in paragraph at lines 20046--20049 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [287] [288] [289] Underfull \hbox (badness 1596) in paragraph at lines 20273--20278 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] Underfull \hbox (badness 2469) in paragraph at lines 20878--20883 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [300] Underfull \hbox (badness 10000) in paragraph at lines 20972--20976 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory [301] [302] Underfull \hbox (badness 1014) in paragraph at lines 21142--21147 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314] Underfull \hbox (badness 1264) in paragraph at lines 21991--21996 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [315] Underfull \hbox (badness 4441) in paragraph at lines 22020--22023 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [316] [317] [318] [319] [320] [321] [322] [323] [324] [325] Underfull \hbox (badness 6047) in paragraph at lines 22794--22796 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [343] [344] [345] [346] [347] [348] [349] [350] Underfull \hbox (badness 2790) in paragraph at lines 24375--24378 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24375--24378 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [351] [352] [353] Underfull \hbox (badness 1194) in paragraph at lines 24664--24667 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [354] [355] [356] Underfull \hbox (badness 2368) in paragraph at lines 24871--24877 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24871--24877 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [357] [358] [359] [360] [361] [362] Underfull \hbox (badness 10000) in paragraph at lines 25256--25259 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [363] [364] [365] [366] [367] [368] [369] [370] [371] Underfull \hbox (badness 10000) in paragraph at lines 25876--25878 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 1038) in paragraph at lines 26737--26745 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26746--26749 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26770--26772 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [384] [385] Underfull \hbox (badness 2142) in paragraph at lines 26911--26915 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26968--26973 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [386] [387] [388] Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27275--27278 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [389] Underfull \hbox (badness 2689) in paragraph at lines 27301--27303 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27336--27341 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27354--27357 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [390] [391] [392] [393] [394] [395] [396] [397] Underfull \hbox (badness 10000) in paragraph at lines 27901--27904 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [398] Underfull \hbox (badness 7925) in paragraph at lines 27982--27986 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27982--27986 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27987--27996 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] Underfull \hbox (badness 2726) in paragraph at lines 28935--28938 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] Underfull \hbox (badness 1603) in paragraph at lines 29685--29688 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [424] [425] [426] [427] [428] [429] Underfull \vbox (badness 10000) has occurred while \output is active [430] [431] [432] [433] [434] [435] [436] [437] Underfull \hbox (badness 1533) in paragraph at lines 30713--30716 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [438] [439] Underfull \hbox (badness 1163) in paragraph at lines 30876--30887 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] Underfull \vbox (badness 10000) has occurred while \output is active [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] Underfull \hbox (badness 10000) in paragraph at lines 32539--32543 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32539--32543 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [464] Underfull \hbox (badness 3557) in paragraph at lines 32560--32562 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32563--32567 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [465] [466] [467] [468] [469] [470] [471] [472] Underfull \hbox (badness 1655) in paragraph at lines 33157--33159 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] Underfull \hbox (badness 2261) in paragraph at lines 34349--34354 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 34376--34382 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 34376--34382 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] Underfull \hbox (badness 10000) in paragraph at lines 36987--36989 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [528] [529] [530] [531] [532] [533] [534] [535] Underfull \hbox (badness 1072) in paragraph at lines 37584--37588 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37589--37593 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37634--37641 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [536] [537] [538] [539] Underfull \hbox (badness 2644) in paragraph at lines 37866--37870 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [540] [541] Underfull \hbox (badness 1142) in paragraph at lines 38018--38024 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] Underfull \hbox (badness 1565) in paragraph at lines 39297--39299 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [560] [561] [562] [563] [564] [565] [566] [567] [568] Underfull \hbox (badness 1137) in paragraph at lines 39887--39893 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39906--39911 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [569] [570] Underfull \hbox (badness 1616) in paragraph at lines 40026--40031 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [571] [572] [573] [574] [575] [576] [577] [578] Underfull \hbox (badness 1472) in paragraph at lines 40568--40571 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] Underfull \hbox (badness 10000) in paragraph at lines 41487--41491 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [592] [593] [594] [595] Underfull \hbox (badness 10000) in paragraph at lines 41738--41741 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [596] [597] [598] Underfull \hbox (badness 10000) in paragraph at lines 41922--41926 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [599] [600] [601] [602] [603] [604] [605] [606] Underfull \hbox (badness 10000) in paragraph at lines 42547--42550 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] Underfull \hbox (badness 1990) in paragraph at lines 43469--43477 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43469--43477 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 1917) in paragraph at lines 43975--43982 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 2452) in paragraph at lines 44428--44434 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [634] [635] [636] [637] [638] [639] Underfull \hbox (badness 3668) in paragraph at lines 44802--44804 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [640] Underfull \hbox (badness 2401) in paragraph at lines 44932--44936 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [641] [642] [643] Underfull \hbox (badness 2111) in paragraph at lines 45139--45144 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. [644] Underfull \hbox (badness 10000) in paragraph at lines 45160--45165 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [645] [646] [647] Underfull \hbox (badness 4001) in paragraph at lines 45385--45387 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [648] [649] [650] [651] [652] Underfull \hbox (badness 5417) in paragraph at lines 45750--45754 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [653] Underfull \hbox (badness 10000) in paragraph at lines 45811--45815 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [654]) (./compiler-pkg.tex Chapter 2. [655] [656] [657] [658]) (./datasets-pkg.tex Chapter 3. [659] [660] [661] [662] [663] [664] Underfull \vbox (badness 1472) has occurred while \output is active [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] Overfull \vbox (4.26088pt too high) has occurred while \output is active [696] [697] [698] [699] [700] [701] Overfull \vbox (13.87083pt too high) has occurred while \output is active [702] Underfull \vbox (badness 2376) has occurred while \output is active [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Overfull \vbox (10.49593pt too high) has occurred while \output is active [719] Overfull \vbox (15.49593pt too high) has occurred while \output is active [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]) (./grDevices-pkg.tex Chapter 4. [735] [736] [737] [738] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [739] [740] [741] [742] [743] [744] [745] [746] [747] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [748] [749] [750] [751] [752] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [753] [754] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [755] Underfull \hbox (badness 1852) in paragraph at lines 1405--1408 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [756] [757] [758] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [759] [760] [761] [762] [763] [764] Underfull \hbox (badness 1325) in paragraph at lines 2017--2027 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [765] Underfull \hbox (badness 10000) in paragraph at lines 2129--2131 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [766] [767] [768] Underfull \hbox (badness 6758) in paragraph at lines 2308--2311 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 10000) in paragraph at lines 2919--2920 Underfull \vbox (badness 10000) has occurred while \output is active [778] [779] [780] [781] [782] [783] [784] [785] Underfull \hbox (badness 10000) in paragraph at lines 3493--3498 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [786] [787] [788] [789] [790] [791] [792] Underfull \vbox (badness 10000) has occurred while \output is active [793] Underfull \hbox (badness 10000) in paragraph at lines 3992--3995 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4732--4737 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [804] Underfull \vbox (badness 10000) has occurred while \output is active [805] [806] Underfull \hbox (badness 1584) in paragraph at lines 4888--4890 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4892--4899 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [807] [808] [809] [810] Underfull \hbox (badness 1377) in paragraph at lines 5198--5203 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [811] Underfull \hbox (badness 1418) in paragraph at lines 5274--5281 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5292--5294 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [812] Underfull \hbox (badness 1377) in paragraph at lines 5403--5408 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [813] Underfull \hbox (badness 7344) in paragraph at lines 5472--5474 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [814] [815] Underfull \hbox (badness 2035) in paragraph at lines 5610--5619 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [816] [817] Underfull \hbox (badness 10000) in paragraph at lines 5678--5680 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [818] [819] Underfull \hbox (badness 1546) in paragraph at lines 5820--5828 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [820] [821] [822] [823] [824] [825] [826] [827] Underfull \hbox (badness 10000) in paragraph at lines 6358--6361 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 1189) in paragraph at lines 7184--7186 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [840] Underfull \hbox (badness 10000) in paragraph at lines 7289--7291 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [841] [842] [843] [844] [845] Underfull \hbox (badness 3780) in paragraph at lines 7603--7609 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [846] [847] Underfull \hbox (badness 2680) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [848] [849] [850]) (./graphics-pkg.tex Chapter 5. [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [866] [867] [868] [869] [870] [871] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \hbox (badness 1728) in paragraph at lines 2333--2335 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [887] Underfull \hbox (badness 1009) in paragraph at lines 2426--2433 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] Underfull \vbox (badness 10000) has occurred while \output is active [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] Underfull \hbox (badness 3229) in paragraph at lines 4602--4607 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [921] [922] [923] [924] Underfull \hbox (badness 10000) in paragraph at lines 5032--5038 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5032--5038 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [925] [926] Underfull \hbox (badness 10000) in paragraph at lines 5163--5166 [927 ] Underfull \hbox (badness 10000) in paragraph at lines 5224--5226 [928 ] [929] Underfull \hbox (badness 10000) in paragraph at lines 5414--5416 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [930] [931] [932] [933] [934] [935] [936] [937]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5896 \aliasA{plot}{plot.default}{plot} [938] [939] [940] [941] [942] [943] [944] [945] [946] [947] [948] [949] [950] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802 [][] [951 ] [952] Underfull \vbox (badness 10000) has occurred while \output is active [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] Underfull \hbox (badness 2012) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] Underfull \hbox (badness 10000) in paragraph at lines 8889--8891 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8891--8893 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [983]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8971 \HeaderA{units}{Graphical Units}{units} [984] [985] [986] [987]) (./grid-pkg.tex [988] Chapter 6. [989] [990] [991] [992] [993] [994] [995] [996] Underfull \hbox (badness 2680) in paragraph at lines 486--489 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] Underfull \hbox (badness 4279) in paragraph at lines 1112--1121 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1006] Underfull \vbox (badness 10000) has occurred while \output is active [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] Underfull \vbox (badness 10000) has occurred while \output is active [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] Underfull \hbox (badness 1067) in paragraph at lines 4537--4540 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1060] [1061] [1062] [1063] Underfull \hbox (badness 7256) in paragraph at lines 4782--4784 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] Underfull \hbox (badness 1824) in paragraph at lines 6753--6756 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1095] [1096] [1097] [1098]) (./methods-pkg.tex Chapter 7. [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] Underfull \vbox (badness 10000) has occurred while \output is active [1107] Underfull \vbox (badness 10000) has occurred while \output is active [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1125] [1126] [1127] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1128] [1129] [1130] [1131] [1132] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1133] [1134] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1135] [1136] [1137] [1138] [1139] [1140] [1141] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1147] [1148] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] Underfull \vbox (badness 10000) has occurred while \output is active [1167] Underfull \vbox (badness 10000) has occurred while \output is active [1168] [1169] [1170] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1171] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1172] [1173] [1174] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1183] [1184] [1185] [1186] Underfull \vbox (badness 10000) has occurred while \output is active [1187] [1188] [1189]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1190] [1191] [1192]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1193] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1194] [1195] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1229] [1230] [1231] [1232] [1233] [1234] [1235] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1236] [1237] [1238]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1239] [1240] [1241] [1242] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] Underfull \hbox (badness 3386) in paragraph at lines 1401--1404 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1259] [1260] [1261]) (./splines-pkg.tex [1262] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276]) (./stats-pkg.tex Chapter 10. [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1290] [1291] [1292] [1293] [1294] [1295] [1296] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1297] [1298] [1299] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1342] [1343] [1344] [1345] [1346] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1356] [1357] [1358] [1359] [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] Underfull \vbox (badness 10000) has occurred while \output is active [1408] [1409] [1410] [1411] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1412] [1413] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1433] [1434] [1435] [1436] [1437] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1438] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1439] [1440] [1441] [1442] [1443] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1452] [1453] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] Underfull \hbox (badness 10000) in paragraph at lines 12650--12652 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1463] [1464] [1465] [1466] [1467] Underfull \hbox (badness 2894) in paragraph at lines 12986--12990 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] Underfull \hbox (badness 4518) in paragraph at lines 13737--13742 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] Underfull \hbox (badness 4518) in paragraph at lines 14390--14395 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1489] [1490] Underfull \hbox (badness 8151) in paragraph at lines 14528--14532 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14535--14537 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] Underfull \hbox (badness 2503) in paragraph at lines 15611--15615 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] Underfull \hbox (badness 10000) in paragraph at lines 16124--16130 []\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16124--16130 \T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response (m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s ums any terms [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 1158) in paragraph at lines 17767--17770 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm /m/n/10 as the data ar-gu-ment. The ac- [1540] [1541] Underfull \vbox (badness 10000) has occurred while \output is active [1542] Underfull \vbox (badness 10000) has occurred while \output is active [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 1377) in paragraph at lines 18790--18795 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on [1555] Underfull \hbox (badness 1735) in paragraph at lines 18795--18798 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18808--18812 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18808--18812 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18816--18820 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1556] [1557] [1558] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1559] [1560] [1561] [1562] [1563] [1564] [1565] Underfull \hbox (badness 1337) in paragraph at lines 19503--19506 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] Underfull \hbox (badness 3049) in paragraph at lines 20001--20005 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1574] [1575] [1576] [1577] Underfull \hbox (badness 1194) in paragraph at lines 20264--20267 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1578] [1579] [1580] [1581] [1582] [1583] [1584] Underfull \hbox (badness 2503) in paragraph at lines 20643--20646 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20670--20672 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] Underfull \hbox (badness 10000) in paragraph at lines 21748--21754 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 1337) in paragraph at lines 23105--23111 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1622] [1623] [1624] [1625] [1626] [1627] [1628] Underfull \hbox (badness 3780) in paragraph at lines 23530--23533 []\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th e pre-ci-sion to use when for-mat- Underfull \hbox (badness 1152) in paragraph at lines 23530--23533 \T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s ions up to 4.0.x, this had been set to [1629] [1630] Underfull \hbox (badness 10000) in paragraph at lines 23671--23672 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1631] [1632] [1633] [1634] Underfull \hbox (badness 10000) in paragraph at lines 23955--23958 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23955--23958 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] Underfull \hbox (badness 1824) in paragraph at lines 24632--24638 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24632--24638 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 24653--24656 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = [1645] Underfull \hbox (badness 3690) in paragraph at lines 24722--24726 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 2165) in paragraph at lines 25234--25239 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] Underfull \hbox (badness 1867) in paragraph at lines 25439--25441 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25454--25458 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \vbox (badness 10000) has occurred while \output is active [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] Underfull \vbox (badness 10000) has occurred while \output is active [1679] [1680] Underfull \hbox (badness 3514) in paragraph at lines 27017--27022 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] [1682] [1683] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1684] Underfull \hbox (badness 3514) in paragraph at lines 27287--27293 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1685] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1686] [1687] [1688] Underfull \hbox (badness 3514) in paragraph at lines 27520--27525 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1689] Underfull \hbox (badness 3514) in paragraph at lines 27607--27612 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1690] Underfull \hbox (badness 3514) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1691] [1692] Underfull \hbox (badness 3514) in paragraph at lines 27766--27771 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1693] Underfull \hbox (badness 6691) in paragraph at lines 27858--27863 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 4024) in paragraph at lines 28349--28352 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 5431) in paragraph at lines 28955--28957 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1711] [1712] [1713] [1714] Underfull \hbox (badness 5431) in paragraph at lines 29165--29168 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1715] [1716] [1717] [1718] [1719] Underfull \hbox (badness 1337) in paragraph at lines 29480--29484 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1720] [1721] [1722] [1723] Underfull \hbox (badness 1616) in paragraph at lines 29792--29795 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] Underfull \hbox (badness 3557) in paragraph at lines 30927--30931 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1742] [1743] Underfull \vbox (badness 10000) has occurred while \output is active [1744] [1745] [1746] Underfull \hbox (badness 1337) in paragraph at lines 31291--31295 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] Underfull \hbox (badness 1337) in paragraph at lines 31820--31824 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31834--31836 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1755] [1756] [1757] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1758] [1759] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1760] [1761] [1762] [1763] [1764]) (./stats4-pkg.tex Chapter 11. [1765] [1766] [1767] Underfull \vbox (badness 10000) has occurred while \output is active [1768] [1769] [1770] [1771] [1772]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1773] [1774] [1775]) (./tcltk-pkg.tex [1776] Chapter 12. [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \vbox (badness 10000) has occurred while \output is active [1784] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796]) (./tools-pkg.tex Chapter 13. [1797] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1798] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1799] [1800] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1801] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1802] [1803] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1804] [1805] [1806] [1807] [1808] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1815] [1816] [1817] [1818] [1819] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1820] [1821] Underfull \hbox (badness 7981) in paragraph at lines 1707--1715 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1822] Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1823] [1824] [1825]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1826] [1827] [1828] [1829] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1830] [1831] [1832] Underfull \hbox (badness 7981) in paragraph at lines 2391--2399 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1833] [1834] [1835] [1836] [1837] [1838] [1839] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [1840] [1841] [1842] [1843] Underfull \hbox (badness 1424) in paragraph at lines 3177--3179 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1855] [1856] Underfull \hbox (badness 10000) in paragraph at lines 4017--4020 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1857] Underfull \hbox (badness 1137) in paragraph at lines 4119--4121 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1858] [1859] [1860] [1861] [1862] Underfull \hbox (badness 1796) in paragraph at lines 4427--4432 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1863] Underfull \hbox (badness 1838) in paragraph at lines 4501--4507 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4501--4507 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1864] [1865] [1866] [1867] Underfull \hbox (badness 2197) in paragraph at lines 4776--4786 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1868] Underfull \hbox (badness 1571) in paragraph at lines 4842--4846 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1869] [1870] [1871]) (./utils-pkg.tex [1872] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1873] [1874] [1875] [1876] [1877] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 10000) in paragraph at lines 720--726 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 720--726 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1883] [1884] Underfull \hbox (badness 5847) in paragraph at lines 857--863 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 857--863 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1885] Underfull \hbox (badness 3861) in paragraph at lines 925--930 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1886] [1887] [1888] Underfull \hbox (badness 3323) in paragraph at lines 1108--1116 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1889] [1890] [1891] [1892] [1893] [1894] [1895] Underfull \hbox (badness 1371) in paragraph at lines 1625--1627 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1695. [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] Underfull \hbox (badness 2057) in paragraph at lines 2346--2348 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1906] [1907] [1908] [1909] [1910]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2697 ... the Clipboard in MS Windows}{clipboard} [1911] [1912] [1913] Underfull \hbox (badness 1748) in paragraph at lines 2864--2867 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1914] [1915] [1916] [1917] [1918] [1919] Underfull \hbox (badness 5388) in paragraph at lines 3274--3278 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3279--3282 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] Underfull \hbox (badness 1430) in paragraph at lines 4063--4071 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1931] Underfull \hbox (badness 1231) in paragraph at lines 4140--4152 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1932] [1933] Underfull \hbox (badness 10000) in paragraph at lines 4297--4299 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.format}) has been a lready used, duplicate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] Underfull \hbox (badness 1622) in paragraph at lines 5514--5518 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6232. [1962] Underfull \hbox (badness 1371) in paragraph at lines 6236--6238 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1963] Underfull \hbox (badness 1502) in paragraph at lines 6325--6330 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6325--6330 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1964] [1965] Underfull \hbox (badness 10000) in paragraph at lines 6498--6507 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1966] Underfull \hbox (badness 2150) in paragraph at lines 6562--6565 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1967] [1968] Underfull \hbox (badness 3118) in paragraph at lines 6701--6703 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1969] [1970] Underfull \hbox (badness 1325) in paragraph at lines 6880--6884 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6892--6898 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1971] Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1972] Underfull \hbox (badness 3219) in paragraph at lines 7043--7050 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7043--7050 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 7051--7054 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1973] [1974] Underfull \hbox (badness 1546) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7210--7215 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] Underfull \hbox (badness 10000) in paragraph at lines 7997--7999 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 8735--8737 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8757--8762 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1999] [2000] [2001] [2002] [2003] [2004] [2005] Underfull \hbox (badness 1248) in paragraph at lines 9283--9287 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2006] Underfull \hbox (badness 1789) in paragraph at lines 9363--9365 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014] [2015] Underfull \vbox (badness 5533) has occurred while \output is active [2016] [2017] [2018] Underfull \hbox (badness 1097) in paragraph at lines 10200--10203 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2019] [2020] Underfull \hbox (badness 3000) in paragraph at lines 10336--10341 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] Underfull \hbox (badness 2134) in paragraph at lines 10925--10930 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2029] Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2030] [2031] [2032] [2033] [2034] [2035] [2036] Underfull \hbox (badness 2469) in paragraph at lines 11475--11479 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11475--11479 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 4060) in paragraph at lines 11891--11894 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2043] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2044] [2045] [2046] Underfull \hbox (badness 2150) in paragraph at lines 12162--12164 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2047] [2048] [2049] [2050] Underfull \hbox (badness 10000) in paragraph at lines 12381--12385 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12412--12418 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2051] [2052] Underfull \hbox (badness 1009) in paragraph at lines 12606--12618 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2053] Underfull \hbox (badness 4779) in paragraph at lines 12646--12648 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12676--12683 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 3780) in paragraph at lines 13084--13088 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13100--13103 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2060] [2061] [2062] Underfull \hbox (badness 2302) in paragraph at lines 13305--13307 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 10000) in paragraph at lines 13603--13608 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2068] [2069] [2070] [2071] [2072] [2073] Underfull \hbox (badness 2932) in paragraph at lines 14050--14057 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14050--14057 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2074] [2075] [2076] [2077] Underfull \hbox (badness 6510) in paragraph at lines 14358--14362 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14365--14368 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14365--14368 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 15032--15037 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15032--15037 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2088] Underfull \hbox (badness 10000) in paragraph at lines 15097--15100 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] Underfull \hbox (badness 10000) in paragraph at lines 15875--15877 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2101] [2102] [2103]) [2104] [2105] [2106] (./KernSmooth-pkg.tex Chapter 15. [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116]) (./MASS-pkg.tex Chapter 16. [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2154] [2155] [2156] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2157] [2158] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2184] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2215] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2216] [2217] [2218] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2265] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2266] [2267] [2268] [2269] Underfull \hbox (badness 5119) in paragraph at lines 509--513 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2270] [2271] Underfull \hbox (badness 2035) in paragraph at lines 605--608 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-her-its from class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1 /zi4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2272] [2273] Underfull \hbox (badness 1701) in paragraph at lines 758--762 []\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org / [2274] [2275] Underfull \hbox (badness 5175) in paragraph at lines 877--882 []\T1/ptm/m/n/10 option [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di- cat-ing if the re-sult should be sparse, i.e., for- Underfull \hbox (badness 10000) in paragraph at lines 877--882 \T1/ptm/m/n/10 mally in-her-it-ing from \T1/zi4/m/it/10 "[][]sparseMatrix[][][] "\T1/ptm/m/n/10 . The de-fault, [][]\T1/zi4/m/it/10 NA[][][]\T1/ptm/m/n/10 , de - Underfull \hbox (badness 6675) in paragraph at lines 877--882 \T1/ptm/m/n/10 cides from the ``spar-sity'' of \T1/zi4/m/it/10 x \T1/ptm/m/n/10 and \T1/zi4/m/it/10 y\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m /n/10 code in [2276] [2277] Underfull \hbox (badness 10000) in paragraph at lines 1056--1058 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2278] [2279]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1168 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1168 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1223--1229 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2280] [2281] [2282] Underfull \hbox (badness 2277) in paragraph at lines 1423--1426 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2283] [2284] Underfull \hbox (badness 1097) in paragraph at lines 1595--1598 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1601--1605 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2285]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1658 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1658 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1659 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1680 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1691 \aliasA{rowSums}{colSums}{rowSums} [2286] [2287] [2288] Underfull \hbox (badness 3547) in paragraph at lines 1910--1913 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2289] [2290] [2291] [2292] [2293] Underfull \hbox (badness 1360) in paragraph at lines 2333--2337 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2294] [2295] [2296] [2297] Underfull \hbox (badness 2717) in paragraph at lines 2649--2653 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2298] [2299] Underfull \hbox (badness 6842) in paragraph at lines 2739--2742 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2300] Underfull \hbox (badness 10000) in paragraph at lines 3026--3030 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2301] [2302] [2303] Underfull \hbox (badness 1173) in paragraph at lines 3236--3238 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3283--3285 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2304] [2305] Underfull \hbox (badness 1354) in paragraph at lines 3482--3485 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2306] [2307] [2308] [2309] [2310] Underfull \hbox (badness 6188) in paragraph at lines 3892--3895 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3895--3898 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2311] [2312] Underfull \hbox (badness 2318) in paragraph at lines 4010--4014 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2313] [2314] Underfull \hbox (badness 5245) in paragraph at lines 4146--4150 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2315] [2316] [2317] [2318] [2319] [2320] Overfull \hbox (23.27168pt too wide) in paragraph at lines 4563--4563 []\T1/zi4/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe ll-Boeing/counterx/counterx.html[] Overfull \hbox (8.27782pt too wide) in paragraph at lines 4570--4570 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB /Boeing/msc00726.tar.gz"))))[] [2321] [2322] Underfull \hbox (badness 1931) in paragraph at lines 4802--4804 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2323] [2324] [2325] [2326] [2327] Underfull \hbox (badness 1005) in paragraph at lines 5108--5113 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5108--5113 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5127--5130 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2328] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5175--5175 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2329] Underfull \hbox (badness 3229) in paragraph at lines 5276--5285 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2330] Underfull \hbox (badness 10000) in paragraph at lines 5318--5320 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 4995) in paragraph at lines 5323--5326 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5333--5336 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2331] [2332] [2333] [2334] [2335] Underfull \hbox (badness 1014) in paragraph at lines 5712--5715 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2336] [2337] [2338] [2339] Underfull \hbox (badness 10000) in paragraph at lines 6027--6030 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2340] Underfull \hbox (badness 2478) in paragraph at lines 6139--6144 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2341] Underfull \hbox (badness 10000) in paragraph at lines 6147--6150 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2342] Underfull \hbox (badness 10000) in paragraph at lines 6339--6342 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2343] Underfull \hbox (badness 10000) in paragraph at lines 6437--6440 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2344] Underfull \hbox (badness 10000) in paragraph at lines 6512--6515 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2345] Underfull \hbox (badness 2050) in paragraph at lines 6588--6591 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2346] [2347] [2348] [2349] [2350] Underfull \hbox (badness 6268) in paragraph at lines 6901--6905 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2351]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.7000 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 7093--7095 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode [2352] Underfull \hbox (badness 4846) in paragraph at lines 7098--7101 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 7103--7106 [2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7176 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7284 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7383 ...tcrossprod}{matrix-products}{tcrossprod} [2354] Underfull \hbox (badness 10000) in paragraph at lines 7556--7561 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7556--7561 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7565--7567 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7567--7569 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7571--7572 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2355] [2356] Underfull \hbox (badness 1430) in paragraph at lines 7715--7720 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2357] Underfull \hbox (badness 10000) in paragraph at lines 7786--7789 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2358] Underfull \hbox (badness 10000) in paragraph at lines 7842--7844 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2359] [2360] Underfull \vbox (badness 10000) has occurred while \output is active [2361] Underfull \hbox (badness 2478) in paragraph at lines 8049--8054 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 8057--8060 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2362] [2363] Underfull \hbox (badness 5924) in paragraph at lines 8251--8253 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2364]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8291 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8291 \HeaderA{norm}{Matrix Norms}{norm} [2365] [2366] Underfull \hbox (badness 10000) in paragraph at lines 8564--8567 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2367] Underfull \hbox (badness 10000) in paragraph at lines 8654--8657 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2368] Underfull \hbox (badness 10000) in paragraph at lines 8730--8733 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2369] Underfull \vbox (badness 10000) has occurred while \output is active [2370] Underfull \hbox (badness 10000) in paragraph at lines 8856--8858 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8861--8864 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2371] [2372] [2373] [2374]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.9093 \aliasA{qr}{qr-methods}{qr} [2375] [2376] [2377] [2378]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9419 ... the Reciprocal Condition Number}{rcond} [2379] [2380] [2381] [2382] [2383] Underfull \hbox (badness 2351) in paragraph at lines 9723--9731 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9723--9731 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9723--9731 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2384] [2385] [2386] [2387]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9998 \aliasA{solve}{solve-methods}{solve} [2388] Underfull \hbox (badness 10000) in paragraph at lines 10161--10168 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2389] Underfull \hbox (badness 4403) in paragraph at lines 10222--10225 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10292--10295 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2390] Underfull \hbox (badness 10000) in paragraph at lines 10328--10331 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10339--10343 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2391] [2392] [2393] [2394] [2395] [2396] [2397] [2398] Underfull \hbox (badness 10000) in paragraph at lines 10916--10924 []\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn s an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 10916--10924 \T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x) \T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 10941--10949 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10941--10949 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2399]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.11007 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2400] [2401] Underfull \hbox (badness 5036) in paragraph at lines 11193--11195 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2402] [2403] Underfull \hbox (badness 10000) in paragraph at lines 11400--11403 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2404] Underfull \vbox (badness 10000) has occurred while \output is active [2405] [2406] [2407] Underfull \hbox (badness 10000) in paragraph at lines 11669--11674 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2408] Underfull \hbox (badness 2057) in paragraph at lines 11749--11751 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2409] [2410] Underfull \hbox (badness 10000) in paragraph at lines 11918--11923 []\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[] [][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 11924--11930 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2411] Underfull \hbox (badness 1902) in paragraph at lines 11959--11963 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2412] [2413] [2414] [2415] [2416] [2417] [2418] Underfull \hbox (badness 6910) in paragraph at lines 12558--12560 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2419] Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12605. Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12605. [2420] [2421]) (./boot-pkg.tex [2422] Chapter 18. [2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2433] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2434] Underfull \vbox (badness 10000) has occurred while \output is active [2435] [2436] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2437] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2438] [2439] [2440] [2441] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2442] [2443] [2444] [2445] [2446] [2447] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2448] [2449] Underfull \vbox (badness 10000) has occurred while \output is active [2450] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2451] [2452] [2453] [2454] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2455] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2456] [2457] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2492] [2493] [2494] [2495] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2496] [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] [2506] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525]) (./class-pkg.tex [2526] Chapter 19. [2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536] [2537] [2538] [2539] [2540] [2541] [2542]) (./cluster-pkg.tex Chapter 20. [2543] [2544] [2545] [2546] [2547] Underfull \vbox (badness 7777) has occurred while \output is active [2548] [2549] [2550] [2551] [2552] Underfull \hbox (badness 4144) in paragraph at lines 691--694 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2553] [2554] Underfull \hbox (badness 1412) in paragraph at lines 783--788 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2555] Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2556] [2557] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2558] [2559] [2560] Underfull \hbox (badness 6110) in paragraph at lines 1207--1211 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2561] [2562] [2563] Underfull \hbox (badness 10000) in paragraph at lines 1476--1479 [2564] [2565] Underfull \hbox (badness 2503) in paragraph at lines 1588--1591 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] Underfull \hbox (badness 10000) in paragraph at lines 2182--2185 Underfull \hbox (badness 10000) in paragraph at lines 2196--2202 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2574] [2575] [2576] [2577] Underfull \hbox (badness 6675) in paragraph at lines 2431--2433 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2578] [2579] [2580] [2581] [2582] [2583] [2584] Underfull \hbox (badness 2980) in paragraph at lines 2961--2965 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2585] [2586] [2587] [2588] [2589] [2590] Underfull \hbox (badness 1142) in paragraph at lines 3302--3305 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2591] [2592] Underfull \hbox (badness 1142) in paragraph at lines 3421--3424 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2593] [2594] [2595] Underfull \hbox (badness 2582) in paragraph at lines 3644--3649 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2596] Underfull \hbox (badness 3209) in paragraph at lines 3706--3711 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3706--3711 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2597] [2598] [2599] [2600] [2601] Underfull \hbox (badness 10000) in paragraph at lines 3998--4000 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2602] [2603] [2604] [2605] Underfull \hbox (badness 2626) in paragraph at lines 4227--4232 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2606] Underfull \hbox (badness 1383) in paragraph at lines 4305--4310 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2607] [2608] [2609] [2610] [2611] [2612] [2613] Underfull \hbox (badness 10000) in paragraph at lines 4748--4750 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2614] [2615]) (./codetools-pkg.tex [2616] Chapter 21. [2617] [2618] [2619] [2620] [2621]) (./foreign-pkg.tex [2622] Chapter 22. [2623] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2624] [2625] [2626] [2627] [2628] [2629] [2630] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 7133) in paragraph at lines 550--558 []\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][] [2631] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2632] [2633] [2634] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2635] [2636] [2637] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2638] [2639] [2640] [2641] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2642] [2643]) (./lattice-pkg.tex [2644] Chapter 23. [2645] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2661] Underfull \vbox (badness 4416) has occurred while \output is active [2662] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2663] [2664] [2665] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2666] [2667] [2668] [2669] [2670] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680] Underfull \hbox (badness 2781) in paragraph at lines 2849--2851 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2681] [2682] Underfull \hbox (badness 2486) in paragraph at lines 3001--3005 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2683] [2684] [2685] [2686] [2687] [2688]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.parallel}) has been already used, duplicate ign ored \relax l.3475 \aliasA{parallel}{B\_08\_splom}{parallel} [2689] [2690] [2691] [2692] [2693] [2694] [2695] [2696] Underfull \hbox (badness 5696) in paragraph at lines 3970--3974 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3970--3974 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3970--3974 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2697] Underfull \hbox (badness 1173) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in [2698] Underfull \hbox (badness 3219) in paragraph at lines 4136--4138 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2699] [2700] Underfull \hbox (badness 3492) in paragraph at lines 4336--4346 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , [2701] Underfull \hbox (badness 10000) in paragraph at lines 4361--4364 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4364--4366 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] Underfull \hbox (badness 6157) in paragraph at lines 5087--5090 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2711] [2712] [2713] [2714] [2715] [2716] [2717] Underfull \hbox (badness 10000) in paragraph at lines 5545--5548 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5545--5548 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 4805) in paragraph at lines 5907--5911 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5918--5925 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5918--5925 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5918--5925 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5918--5925 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5918--5925 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2723] [2724] [2725] [2726] Underfull \hbox (badness 4242) in paragraph at lines 6218--6223 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6218--6223 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2727] [2728] Underfull \hbox (badness 2310) in paragraph at lines 6334--6339 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739] Underfull \hbox (badness 3168) in paragraph at lines 7116--7120 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2740] [2741] [2742] [2743] Underfull \hbox (badness 2012) in paragraph at lines 7387--7390 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2744] [2745] Underfull \hbox (badness 3333) in paragraph at lines 7559--7561 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2746] [2747] [2748] Underfull \vbox (badness 10000) has occurred while \output is active [2749] [2750] [2751] Underfull \hbox (badness 1436) in paragraph at lines 7973--7979 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759] Underfull \hbox (badness 10000) in paragraph at lines 8531--8534 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2760] Underfull \hbox (badness 1092) in paragraph at lines 8577--8579 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2761] [2762] Underfull \hbox (badness 3895) in paragraph at lines 8738--8741 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2763] Underfull \hbox (badness 1515) in paragraph at lines 8814--8818 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2764] [2765] Underfull \hbox (badness 6316) in paragraph at lines 8920--8925 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8937--8940 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2766] [2767] [2768] [2769] Overfull \hbox (5.28876pt too wide) in paragraph at lines 9228--9232 []\T1/ptm/m/n/10 Returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2770] [2771] [2772] [2773] [2774] [2775] [2776] Underfull \hbox (badness 2310) in paragraph at lines 9692--9696 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9697--9700 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2777] [2778] [2779]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9923 \aliasA{melanoma}{H\_melanoma}{melanoma} [2780] [2781] [2782] Underfull \hbox (badness 4144) in paragraph at lines 10147--10150 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10147--10150 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2783] [2784]) (./mgcv-pkg.tex Chapter 24. [2785] [2786] [2787] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2788] [2789] [2790] [2791] Underfull \hbox (badness 10000) in paragraph at lines 378--385 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 378--385 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2792] [2793] [2794] [2795] [2796] Underfull \hbox (badness 1406) in paragraph at lines 703--704 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2797] [2798] [2799] Underfull \hbox (badness 1158) in paragraph at lines 813--815 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion Underfull \hbox (badness 1259) in paragraph at lines 876--877 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2800] [2801] [2802] [2803] [2804] Underfull \hbox (badness 1281) in paragraph at lines 1160--1161 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2805] [2806] Underfull \vbox (badness 10000) has occurred while \output is active [2807] Underfull \vbox (badness 10000) has occurred while \output is active [2808] [2809] Underfull \vbox (badness 10000) has occurred while \output is active [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] Underfull \hbox (badness 1142) in paragraph at lines 2361--2365 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2387--2392 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2826] [2827] [2828] [2829] [2830] [2831] Underfull \vbox (badness 10000) has occurred while \output is active [2832] Underfull \vbox (badness 10000) has occurred while \output is active [2833] [2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 10000) in paragraph at lines 3822--3826 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2850] [2851] Underfull \vbox (badness 10000) has occurred while \output is active [2852] [2853] [2854] Underfull \hbox (badness 1184) in paragraph at lines 4108--4112 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] [2863] [2864] [2865] [2866] Underfull \hbox (badness 1142) in paragraph at lines 4829--4833 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2867] Underfull \hbox (badness 1231) in paragraph at lines 4933--4935 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2868] [2869] [2870] Underfull \vbox (badness 10000) has occurred while \output is active [2871] [2872] [2873] [2874] Underfull \hbox (badness 2181) in paragraph at lines 5377--5378 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2875] [2876] [2877] [2878] [2879] [2880] [2881] Underfull \hbox (badness 10000) in paragraph at lines 5766--5767 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] Underfull \hbox (badness 1142) in paragraph at lines 6351--6355 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2893] [2894] [2895] Underfull \vbox (badness 10000) has occurred while \output is active [2896] [2897] [2898] [2899] Underfull \hbox (badness 1087) in paragraph at lines 6723--6724 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2900] [2901] Underfull \vbox (badness 10000) has occurred while \output is active [2902] Underfull \vbox (badness 10000) has occurred while \output is active [2903] [2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914] [2915] Underfull \hbox (badness 1242) in paragraph at lines 7672--7673 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \hbox (badness 6001) in paragraph at lines 8312--8314 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935] [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] Underfull \hbox (badness 1038) in paragraph at lines 9061--9064 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9061--9064 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2939] Underfull \hbox (badness 10000) in paragraph at lines 9117--9120 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] Underfull \hbox (badness 1852) in paragraph at lines 9790--9793 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2951] [2952] [2953] Underfull \hbox (badness 1852) in paragraph at lines 9959--9962 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] Underfull \hbox (badness 1205) in paragraph at lines 10191--10193 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10191--10193 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10197--10202 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2958] Underfull \hbox (badness 1205) in paragraph at lines 10281--10283 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10281--10283 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2959] [2960] [2961] Underfull \hbox (badness 1253) in paragraph at lines 10480--10482 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2962] [2963] [2964] [2965] [2966] [2967] Underfull \hbox (badness 4792) in paragraph at lines 10741--10744 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10741--10744 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2968] Underfull \hbox (badness 10000) in paragraph at lines 10848--10851 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] [2978] [2979] [2980] [2981] Underfull \vbox (badness 10000) has occurred while \output is active [2982] Underfull \hbox (badness 3861) in paragraph at lines 11637--11640 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2983] [2984] Underfull \hbox (badness 1320) in paragraph at lines 11752--11757 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2985] Underfull \hbox (badness 1975) in paragraph at lines 11858--11863 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2986] [2987] Underfull \hbox (badness 1762) in paragraph at lines 11947--11959 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2988] [2989] [2990] Underfull \hbox (badness 7667) in paragraph at lines 12159--12165 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2991] Underfull \hbox (badness 10000) in paragraph at lines 12200--12201 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2992] [2993] [2994] [2995] Underfull \vbox (badness 10000) has occurred while \output is active [2996] Underfull \hbox (badness 10000) in paragraph at lines 12477--12479 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2997] [2998] Underfull \hbox (badness 10000) in paragraph at lines 12607--12608 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2999] [3000] [3001] Underfull \hbox (badness 1436) in paragraph at lines 12745--12752 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [3002] [3003] Underfull \hbox (badness 10000) in paragraph at lines 12840--12841 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011] [3012] [3013] Underfull \hbox (badness 10000) in paragraph at lines 13441--13447 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13441--13447 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [3014] [3015] [3016] Underfull \vbox (badness 10000) has occurred while \output is active [3017] Underfull \vbox (badness 10000) has occurred while \output is active [3018] [3019] Underfull \hbox (badness 10000) in paragraph at lines 13784--13785 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3020] [3021] [3022] [3023] Underfull \hbox (badness 3895) in paragraph at lines 14044--14047 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3024] Underfull \hbox (badness 10000) in paragraph at lines 14089--14091 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3025] [3026] [3027] [3028] [3029] Underfull \hbox (badness 1371) in paragraph at lines 14363--14369 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14403--14407 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14403--14407 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14403--14407 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3030] [3031] [3032] [3033] Underfull \hbox (badness 2326) in paragraph at lines 14608--14615 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3034] Underfull \hbox (badness 2158) in paragraph at lines 14693--14693 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] Underfull \hbox (badness 1796) in paragraph at lines 16345--16348 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071]) (./nlme-pkg.tex [3072] Chapter 25. [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] Underfull \hbox (badness 2875) in paragraph at lines 1996--2002 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1996--2002 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3103] [3104] [3105] [3106] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed ...shipout:D \box_use:N \l_shipout_box l.3194 ] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] Underfull \hbox (badness 1067) in paragraph at lines 4419--4424 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150] [3151] Underfull \hbox (badness 10000) in paragraph at lines 5165--5169 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3152] [3153] [3154] [3155] [3156] [3157] [3158] Underfull \hbox (badness 10000) in paragraph at lines 5597--5600 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3159] [3160] [3161] [3162] [3163] [3164] [3165] Underfull \hbox (badness 10000) in paragraph at lines 5978--5983 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3166] [3167] [3168] [3169] Underfull \hbox (badness 1490) in paragraph at lines 6248--6259 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3170] Underfull \hbox (badness 10000) in paragraph at lines 6312--6314 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3171] [3172] [3173] [3174] [3175] [3176] Underfull \hbox (badness 10000) in paragraph at lines 6726--6728 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3177] [3178] [3179] [3180] Underfull \hbox (badness 10000) in paragraph at lines 6999--7006 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3181] [3182] [3183] [3184] Underfull \hbox (badness 10000) in paragraph at lines 7259--7264 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] Underfull \hbox (badness 10000) in paragraph at lines 8527--8529 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3204]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8578 \aliasA{sigma}{lmeObject}{sigma} [3205] [3206] [3207] [3208] Underfull \hbox (badness 10000) in paragraph at lines 8808--8815 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] Underfull \hbox (badness 10000) in paragraph at lines 9330--9337 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3217] [3218] [3219] [3220] [3221]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] Underfull \hbox (badness 1596) in paragraph at lines 10465--10491 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3234] [3235] Underfull \hbox (badness 1490) in paragraph at lines 10603--10609 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3236] [3237] [3238] [3239] Underfull \hbox (badness 10000) in paragraph at lines 10844--10846 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] Underfull \hbox (badness 1286) in paragraph at lines 13742--13749 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289] Underfull \hbox (badness 1215) in paragraph at lines 14288--14290 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] [3301] [3302]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] Underfull \hbox (badness 3884) in paragraph at lines 15825--15829 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15825--15829 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15825--15829 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3313] [3314] Underfull \hbox (badness 1067) in paragraph at lines 15937--15942 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). 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Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 377. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv e/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49]) [50] [1] [2] (./base-pkg.tex Chapter 1. [3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1567--1573 [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 2492--2494 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2495--2500 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2495--2500 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Underfull \vbox (badness 10000) has occurred while \output is active [52] [53] [54] [55] [56] [57] [58] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] Underfull \hbox (badness 2521) in paragraph at lines 5180--5182 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] [97] [98] [99] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 7020--7023 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [103] [104] Underfull \hbox (badness 6063) in paragraph at lines 7202--7208 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [105] Underfull \hbox (badness 1303) in paragraph at lines 7264--7271 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the Underfull \hbox (badness 2111) in paragraph at lines 7275--7280 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [106] [107] Underfull \vbox (badness 10000) has occurred while \output is active [108] [109] [110] Underfull \hbox (badness 1077) in paragraph at lines 7593--7599 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7593--7599 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [111] [112] [113] [114] [115] Underfull \hbox (badness 2096) in paragraph at lines 7948--7952 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [116] [117] Underfull \hbox (badness 2351) in paragraph at lines 8062--8065 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [118] [119] [120] [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 8388--8399 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] Underfull \hbox (badness 1629) in paragraph at lines 8839--8851 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 6396) in paragraph at lines 11228--11236 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11228--11236 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 4569) in paragraph at lines 12377--12381 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12377--12381 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] Underfull \hbox (badness 2253) in paragraph at lines 14062--14064 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [201] Underfull \hbox (badness 1565) in paragraph at lines 14138--14142 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [202] Underfull \hbox (badness 4927) in paragraph at lines 14182--14184 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [203] Underfull \hbox (badness 3148) in paragraph at lines 14284--14289 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [204] Underfull \hbox (badness 1466) in paragraph at lines 14331--14334 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [205] [206] Underfull \hbox (badness 10000) in paragraph at lines 14458--14462 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14469--14472 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [207] [208] [209] [210] Underfull \hbox (badness 3965) in paragraph at lines 14766--14770 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] Underfull \hbox (badness 4429) in paragraph at lines 15546--15549 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [223] Underfull \hbox (badness 10000) in paragraph at lines 15652--15654 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15652--15654 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15674--15679 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15674--15679 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15686--15690 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15686--15690 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [224] Underfull \hbox (badness 2035) in paragraph at lines 15725--15729 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [225] Underfull \vbox (badness 10000) has occurred while \output is active [226] [227] [228] [229] [230] [231] [232] [233] Underfull \hbox (badness 2452) in paragraph at lines 16338--16342 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16338--16342 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [234] [235] [236] Underfull \hbox (badness 1092) in paragraph at lines 16511--16516 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [237] [238] [239] Underfull \hbox (badness 6741) in paragraph at lines 16764--16768 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [240] [241] [242] [243] [244] [245] [246] [247] [248] Underfull \vbox (badness 10000) has occurred while \output is active [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] Underfull \hbox (badness 1478) in paragraph at lines 18113--18116 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [259] [260] [261] Underfull \hbox (badness 10000) in paragraph at lines 18381--18383 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [262] [263] [264] [265] [266] [267] [268] [269] [270] Underfull \hbox (badness 1442) in paragraph at lines 18980--18982 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [271] [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19311--19317 [276] [277] [278] Underfull \hbox (badness 1248) in paragraph at lines 19556--19559 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [279] [280] [281] [282] Underfull \hbox (badness 4739) in paragraph at lines 19819--19821 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [283] [284] [285] [286] Underfull \hbox (badness 1603) in paragraph at lines 20046--20049 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [287] [288] [289] Underfull \hbox (badness 1596) in paragraph at lines 20273--20278 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] Underfull \hbox (badness 2469) in paragraph at lines 20878--20883 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [300] Underfull \hbox (badness 10000) in paragraph at lines 20972--20976 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory [301] [302] Underfull \hbox (badness 1014) in paragraph at lines 21142--21147 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314] Underfull \hbox (badness 1264) in paragraph at lines 21991--21996 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [315] Underfull \hbox (badness 4441) in paragraph at lines 22020--22023 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [316] [317] [318] [319] [320] [321] [322] [323] [324] [325] Underfull \hbox (badness 6047) in paragraph at lines 22794--22796 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [343] [344] [345] [346] [347] [348] [349] [350] Underfull \hbox (badness 2790) in paragraph at lines 24375--24378 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24375--24378 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [351] [352] [353] Underfull \hbox (badness 1194) in paragraph at lines 24664--24667 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [354] [355] [356] Underfull \hbox (badness 2368) in paragraph at lines 24871--24877 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24871--24877 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [357] [358] [359] [360] [361] [362] Underfull \hbox (badness 10000) in paragraph at lines 25256--25259 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [363] [364] [365] [366] [367] [368] [369] [370] [371] Underfull \hbox (badness 10000) in paragraph at lines 25876--25878 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 1038) in paragraph at lines 26737--26745 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26746--26749 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26770--26772 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [384] [385] Underfull \hbox (badness 2142) in paragraph at lines 26911--26915 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26968--26973 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [386] [387] [388] Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27275--27278 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [389] Underfull \hbox (badness 2689) in paragraph at lines 27301--27303 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27336--27341 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27354--27357 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [390] [391] [392] [393] [394] [395] [396] [397] Underfull \hbox (badness 10000) in paragraph at lines 27901--27904 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [398] Underfull \hbox (badness 7925) in paragraph at lines 27982--27986 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27982--27986 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27987--27996 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] Underfull \hbox (badness 2726) in paragraph at lines 28935--28938 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] Underfull \hbox (badness 1603) in paragraph at lines 29685--29688 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [424] [425] [426] [427] [428] [429] Underfull \vbox (badness 10000) has occurred while \output is active [430] [431] [432] [433] [434] [435] [436] [437] Underfull \hbox (badness 1533) in paragraph at lines 30713--30716 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [438] [439] Underfull \hbox (badness 1163) in paragraph at lines 30876--30887 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] Underfull \vbox (badness 10000) has occurred while \output is active [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] Underfull \hbox (badness 10000) in paragraph at lines 32539--32543 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32539--32543 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [464] Underfull \hbox (badness 3557) in paragraph at lines 32560--32562 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32563--32567 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [465] [466] [467] [468] [469] [470] [471] [472] Underfull \hbox (badness 1655) in paragraph at lines 33157--33159 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] Underfull \hbox (badness 2261) in paragraph at lines 34349--34354 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 34376--34382 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 34376--34382 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] Underfull \hbox (badness 10000) in paragraph at lines 36987--36989 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [528] [529] [530] [531] [532] [533] [534] [535] Underfull \hbox (badness 1072) in paragraph at lines 37584--37588 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37589--37593 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37634--37641 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [536] [537] [538] [539] Underfull \hbox (badness 2644) in paragraph at lines 37866--37870 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [540] [541] Underfull \hbox (badness 1142) in paragraph at lines 38018--38024 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] Underfull \hbox (badness 1565) in paragraph at lines 39297--39299 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [560] [561] [562] [563] [564] [565] [566] [567] [568] Underfull \hbox (badness 1137) in paragraph at lines 39887--39893 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39906--39911 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [569] [570] Underfull \hbox (badness 1616) in paragraph at lines 40026--40031 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [571] [572] [573] [574] [575] [576] [577] [578] Underfull \hbox (badness 1472) in paragraph at lines 40568--40571 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] Underfull \hbox (badness 10000) in paragraph at lines 41487--41491 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [592] [593] [594] [595] Underfull \hbox (badness 10000) in paragraph at lines 41738--41741 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [596] [597] [598] Underfull \hbox (badness 10000) in paragraph at lines 41922--41926 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [599] [600] [601] [602] [603] [604] [605] [606] Underfull \hbox (badness 10000) in paragraph at lines 42547--42550 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] Underfull \hbox (badness 1990) in paragraph at lines 43469--43477 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43469--43477 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 1917) in paragraph at lines 43975--43982 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 2452) in paragraph at lines 44428--44434 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [634] [635] [636] [637] [638] [639] Underfull \hbox (badness 3668) in paragraph at lines 44802--44804 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [640] Underfull \hbox (badness 2401) in paragraph at lines 44932--44936 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [641] [642] [643] Underfull \hbox (badness 2111) in paragraph at lines 45139--45144 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. [644] Underfull \hbox (badness 10000) in paragraph at lines 45160--45165 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [645] [646] [647] Underfull \hbox (badness 4001) in paragraph at lines 45385--45387 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [648] [649] [650] [651] [652] Underfull \hbox (badness 5417) in paragraph at lines 45750--45754 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [653] Underfull \hbox (badness 10000) in paragraph at lines 45811--45815 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [654]) (./compiler-pkg.tex Chapter 2. [655] [656] [657] [658]) (./datasets-pkg.tex Chapter 3. [659] [660] [661] [662] [663] [664] Underfull \vbox (badness 1472) has occurred while \output is active [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] Overfull \vbox (4.26088pt too high) has occurred while \output is active [696] [697] [698] [699] [700] [701] Overfull \vbox (13.87083pt too high) has occurred while \output is active [702] Underfull \vbox (badness 2376) has occurred while \output is active [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Overfull \vbox (10.49593pt too high) has occurred while \output is active [719] Overfull \vbox (15.49593pt too high) has occurred while \output is active [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]) (./grDevices-pkg.tex Chapter 4. [735] [736] [737] [738] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [739] [740] [741] [742] [743] [744] [745] [746] [747] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [748] [749] [750] [751] [752] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [753] [754] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [755] Underfull \hbox (badness 1852) in paragraph at lines 1405--1408 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [756] [757] [758] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [759] [760] [761] [762] [763] [764] Underfull \hbox (badness 1325) in paragraph at lines 2017--2027 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [765] Underfull \hbox (badness 10000) in paragraph at lines 2129--2131 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [766] [767] [768] Underfull \hbox (badness 6758) in paragraph at lines 2308--2311 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 10000) in paragraph at lines 2919--2920 Underfull \vbox (badness 10000) has occurred while \output is active [778] [779] [780] [781] [782] [783] [784] [785] Underfull \hbox (badness 10000) in paragraph at lines 3493--3498 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [786] [787] [788] [789] [790] [791] [792] Underfull \vbox (badness 10000) has occurred while \output is active [793] Underfull \hbox (badness 10000) in paragraph at lines 3992--3995 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4732--4737 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [804] Underfull \vbox (badness 10000) has occurred while \output is active [805] [806] Underfull \hbox (badness 1584) in paragraph at lines 4888--4890 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4892--4899 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [807] [808] [809] [810] Underfull \hbox (badness 1377) in paragraph at lines 5198--5203 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [811] Underfull \hbox (badness 1418) in paragraph at lines 5274--5281 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5292--5294 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [812] Underfull \hbox (badness 1377) in paragraph at lines 5403--5408 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [813] Underfull \hbox (badness 7344) in paragraph at lines 5472--5474 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [814] [815] Underfull \hbox (badness 2035) in paragraph at lines 5610--5619 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [816] [817] Underfull \hbox (badness 10000) in paragraph at lines 5678--5680 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [818] [819] Underfull \hbox (badness 1546) in paragraph at lines 5820--5828 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [820] [821] [822] [823] [824] [825] [826] [827] Underfull \hbox (badness 10000) in paragraph at lines 6358--6361 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 1189) in paragraph at lines 7184--7186 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [840] Underfull \hbox (badness 10000) in paragraph at lines 7289--7291 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [841] [842] [843] [844] [845] Underfull \hbox (badness 3780) in paragraph at lines 7603--7609 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [846] [847] Underfull \hbox (badness 2680) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [848] [849] [850]) (./graphics-pkg.tex Chapter 5. [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [866] [867] [868] [869] [870] [871] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \hbox (badness 1728) in paragraph at lines 2333--2335 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [887] Underfull \hbox (badness 1009) in paragraph at lines 2426--2433 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] Underfull \vbox (badness 10000) has occurred while \output is active [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] Underfull \hbox (badness 3229) in paragraph at lines 4602--4607 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [921] [922] [923] [924] Underfull \hbox (badness 10000) in paragraph at lines 5032--5038 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5032--5038 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [925] [926] Underfull \hbox (badness 10000) in paragraph at lines 5163--5166 [927 ] Underfull \hbox (badness 10000) in paragraph at lines 5224--5226 [928 ] [929] Underfull \hbox (badness 10000) in paragraph at lines 5414--5416 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [930] [931] [932] [933] [934] [935] [936] [937]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5896 \aliasA{plot}{plot.default}{plot} [938] [939] [940] [941] [942] [943] [944] [945] [946] [947] [948] [949] [950] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802 [][] [951 ] [952] Underfull \vbox (badness 10000) has occurred while \output is active [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] Underfull \hbox (badness 2012) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] Underfull \hbox (badness 10000) in paragraph at lines 8889--8891 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8891--8893 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [983]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8971 \HeaderA{units}{Graphical Units}{units} [984] [985] [986] [987]) (./grid-pkg.tex [988] Chapter 6. [989] [990] [991] [992] [993] [994] [995] [996] Underfull \hbox (badness 2680) in paragraph at lines 486--489 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] Underfull \hbox (badness 4279) in paragraph at lines 1112--1121 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1006] Underfull \vbox (badness 10000) has occurred while \output is active [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] Underfull \vbox (badness 10000) has occurred while \output is active [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] Underfull \hbox (badness 1067) in paragraph at lines 4537--4540 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1060] [1061] [1062] [1063] Underfull \hbox (badness 7256) in paragraph at lines 4782--4784 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] Underfull \hbox (badness 1824) in paragraph at lines 6753--6756 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1095] [1096] [1097] [1098]) (./methods-pkg.tex Chapter 7. [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] Underfull \vbox (badness 10000) has occurred while \output is active [1107] Underfull \vbox (badness 10000) has occurred while \output is active [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1125] [1126] [1127] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1128] [1129] [1130] [1131] [1132] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1133] [1134] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1135] [1136] [1137] [1138] [1139] [1140] [1141] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1147] [1148] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] Underfull \vbox (badness 10000) has occurred while \output is active [1167] Underfull \vbox (badness 10000) has occurred while \output is active [1168] [1169] [1170] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1171] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1172] [1173] [1174] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1183] [1184] [1185] [1186] Underfull \vbox (badness 10000) has occurred while \output is active [1187] [1188] [1189]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1190] [1191] [1192]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1193] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1194] [1195] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1229] [1230] [1231] [1232] [1233] [1234] [1235] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1236] [1237] [1238]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1239] [1240] [1241] [1242] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] Underfull \hbox (badness 3386) in paragraph at lines 1401--1404 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1259] [1260] [1261]) (./splines-pkg.tex [1262] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276]) (./stats-pkg.tex Chapter 10. [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1290] [1291] [1292] [1293] [1294] [1295] [1296] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1297] [1298] [1299] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1342] [1343] [1344] [1345] [1346] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1356] [1357] [1358] [1359] [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] Underfull \vbox (badness 10000) has occurred while \output is active [1408] [1409] [1410] [1411] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1412] [1413] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1433] [1434] [1435] [1436] [1437] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1438] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1439] [1440] [1441] [1442] [1443] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1452] [1453] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] Underfull \hbox (badness 10000) in paragraph at lines 12650--12652 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1463] [1464] [1465] [1466] [1467] Underfull \hbox (badness 2894) in paragraph at lines 12986--12990 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] Underfull \hbox (badness 4518) in paragraph at lines 13737--13742 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] Underfull \hbox (badness 4518) in paragraph at lines 14390--14395 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1489] [1490] Underfull \hbox (badness 8151) in paragraph at lines 14528--14532 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14535--14537 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] Underfull \hbox (badness 2503) in paragraph at lines 15611--15615 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] Underfull \hbox (badness 10000) in paragraph at lines 16124--16130 []\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16124--16130 \T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response (m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s ums any terms [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 1158) in paragraph at lines 17767--17770 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm /m/n/10 as the data ar-gu-ment. The ac- [1540] [1541] Underfull \vbox (badness 10000) has occurred while \output is active [1542] Underfull \vbox (badness 10000) has occurred while \output is active [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 1377) in paragraph at lines 18790--18795 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on [1555] Underfull \hbox (badness 1735) in paragraph at lines 18795--18798 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18808--18812 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18808--18812 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18816--18820 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1556] [1557] [1558] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1559] [1560] [1561] [1562] [1563] [1564] [1565] Underfull \hbox (badness 1337) in paragraph at lines 19503--19506 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] Underfull \hbox (badness 3049) in paragraph at lines 20001--20005 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1574] [1575] [1576] [1577] Underfull \hbox (badness 1194) in paragraph at lines 20264--20267 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1578] [1579] [1580] [1581] [1582] [1583] [1584] Underfull \hbox (badness 2503) in paragraph at lines 20643--20646 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20670--20672 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] Underfull \hbox (badness 10000) in paragraph at lines 21748--21754 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 1337) in paragraph at lines 23105--23111 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1622] [1623] [1624] [1625] [1626] [1627] [1628] Underfull \hbox (badness 3780) in paragraph at lines 23530--23533 []\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th e pre-ci-sion to use when for-mat- Underfull \hbox (badness 1152) in paragraph at lines 23530--23533 \T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s ions up to 4.0.x, this had been set to [1629] [1630] Underfull \hbox (badness 10000) in paragraph at lines 23671--23672 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1631] [1632] [1633] [1634] Underfull \hbox (badness 10000) in paragraph at lines 23955--23958 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23955--23958 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] Underfull \hbox (badness 1824) in paragraph at lines 24632--24638 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24632--24638 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 24653--24656 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = [1645] Underfull \hbox (badness 3690) in paragraph at lines 24722--24726 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 2165) in paragraph at lines 25234--25239 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] Underfull \hbox (badness 1867) in paragraph at lines 25439--25441 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25454--25458 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \vbox (badness 10000) has occurred while \output is active [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] Underfull \vbox (badness 10000) has occurred while \output is active [1679] [1680] Underfull \hbox (badness 3514) in paragraph at lines 27017--27022 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] [1682] [1683] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1684] Underfull \hbox (badness 3514) in paragraph at lines 27287--27293 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1685] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1686] [1687] [1688] Underfull \hbox (badness 3514) in paragraph at lines 27520--27525 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1689] Underfull \hbox (badness 3514) in paragraph at lines 27607--27612 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1690] Underfull \hbox (badness 3514) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1691] [1692] Underfull \hbox (badness 3514) in paragraph at lines 27766--27771 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1693] Underfull \hbox (badness 6691) in paragraph at lines 27858--27863 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 4024) in paragraph at lines 28349--28352 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 5431) in paragraph at lines 28955--28957 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1711] [1712] [1713] [1714] Underfull \hbox (badness 5431) in paragraph at lines 29165--29168 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1715] [1716] [1717] [1718] [1719] Underfull \hbox (badness 1337) in paragraph at lines 29480--29484 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1720] [1721] [1722] [1723] Underfull \hbox (badness 1616) in paragraph at lines 29792--29795 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] Underfull \hbox (badness 3557) in paragraph at lines 30927--30931 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1742] [1743] Underfull \vbox (badness 10000) has occurred while \output is active [1744] [1745] [1746] Underfull \hbox (badness 1337) in paragraph at lines 31291--31295 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] Underfull \hbox (badness 1337) in paragraph at lines 31820--31824 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31834--31836 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1755] [1756] [1757] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1758] [1759] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1760] [1761] [1762] [1763] [1764]) (./stats4-pkg.tex Chapter 11. [1765] [1766] [1767] Underfull \vbox (badness 10000) has occurred while \output is active [1768] [1769] [1770] [1771] [1772]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1773] [1774] [1775]) (./tcltk-pkg.tex [1776] Chapter 12. [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \vbox (badness 10000) has occurred while \output is active [1784] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796]) (./tools-pkg.tex Chapter 13. [1797] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1798] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1799] [1800] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1801] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1802] [1803] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1804] [1805] [1806] [1807] [1808] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1815] [1816] [1817] [1818] [1819] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1820] [1821] Underfull \hbox (badness 7981) in paragraph at lines 1707--1715 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1822] Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1823] [1824] [1825]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1826] [1827] [1828] [1829] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1830] [1831] [1832] Underfull \hbox (badness 7981) in paragraph at lines 2391--2399 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1833] [1834] [1835] [1836] [1837] [1838] [1839] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. 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[1840] [1841] [1842] [1843] Underfull \hbox (badness 1424) in paragraph at lines 3177--3179 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1855] [1856] Underfull \hbox (badness 10000) in paragraph at lines 4017--4020 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1857] Underfull \hbox (badness 1137) in paragraph at lines 4119--4121 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1858] [1859] [1860] [1861] [1862] Underfull \hbox (badness 1796) in paragraph at lines 4427--4432 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1863] Underfull \hbox (badness 1838) in paragraph at lines 4501--4507 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4501--4507 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1864] [1865] [1866] [1867] Underfull \hbox (badness 2197) in paragraph at lines 4776--4786 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1868] Underfull \hbox (badness 1571) in paragraph at lines 4842--4846 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1869] [1870] [1871]) (./utils-pkg.tex [1872] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1873] [1874] [1875] [1876] [1877] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 10000) in paragraph at lines 720--726 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 720--726 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1883] [1884] Underfull \hbox (badness 5847) in paragraph at lines 857--863 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 857--863 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1885] Underfull \hbox (badness 3861) in paragraph at lines 925--930 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1886] [1887] [1888] Underfull \hbox (badness 3323) in paragraph at lines 1108--1116 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1889] [1890] [1891] [1892] [1893] [1894] [1895] Underfull \hbox (badness 1371) in paragraph at lines 1625--1627 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1695. [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] Underfull \hbox (badness 2057) in paragraph at lines 2346--2348 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1906] [1907] [1908] [1909] [1910]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2697 ... the Clipboard in MS Windows}{clipboard} [1911] [1912] [1913] Underfull \hbox (badness 1748) in paragraph at lines 2864--2867 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1914] [1915] [1916] [1917] [1918] [1919] Underfull \hbox (badness 5388) in paragraph at lines 3274--3278 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3279--3282 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] Underfull \hbox (badness 1430) in paragraph at lines 4063--4071 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1931] Underfull \hbox (badness 1231) in paragraph at lines 4140--4152 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1932] [1933] Underfull \hbox (badness 10000) in paragraph at lines 4297--4299 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.format}) has been a lready used, duplicate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] Underfull \hbox (badness 1622) in paragraph at lines 5514--5518 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6232. [1962] Underfull \hbox (badness 1371) in paragraph at lines 6236--6238 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1963] Underfull \hbox (badness 1502) in paragraph at lines 6325--6330 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6325--6330 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1964] [1965] Underfull \hbox (badness 10000) in paragraph at lines 6498--6507 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1966] Underfull \hbox (badness 2150) in paragraph at lines 6562--6565 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1967] [1968] Underfull \hbox (badness 3118) in paragraph at lines 6701--6703 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1969] [1970] Underfull \hbox (badness 1325) in paragraph at lines 6880--6884 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6892--6898 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1971] Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1972] Underfull \hbox (badness 3219) in paragraph at lines 7043--7050 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7043--7050 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 7051--7054 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1973] [1974] Underfull \hbox (badness 1546) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7210--7215 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] Underfull \hbox (badness 10000) in paragraph at lines 7997--7999 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 8735--8737 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8757--8762 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1999] [2000] [2001] [2002] [2003] [2004] [2005] Underfull \hbox (badness 1248) in paragraph at lines 9283--9287 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2006] Underfull \hbox (badness 1789) in paragraph at lines 9363--9365 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014] [2015] Underfull \vbox (badness 5533) has occurred while \output is active [2016] [2017] [2018] Underfull \hbox (badness 1097) in paragraph at lines 10200--10203 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2019] [2020] Underfull \hbox (badness 3000) in paragraph at lines 10336--10341 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] Underfull \hbox (badness 2134) in paragraph at lines 10925--10930 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2029] Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2030] [2031] [2032] [2033] [2034] [2035] [2036] Underfull \hbox (badness 2469) in paragraph at lines 11475--11479 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11475--11479 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 4060) in paragraph at lines 11891--11894 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2043] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2044] [2045] [2046] Underfull \hbox (badness 2150) in paragraph at lines 12162--12164 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2047] [2048] [2049] [2050] Underfull \hbox (badness 10000) in paragraph at lines 12381--12385 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12412--12418 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2051] [2052] Underfull \hbox (badness 1009) in paragraph at lines 12606--12618 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2053] Underfull \hbox (badness 4779) in paragraph at lines 12646--12648 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12676--12683 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 3780) in paragraph at lines 13084--13088 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13100--13103 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2060] [2061] [2062] Underfull \hbox (badness 2302) in paragraph at lines 13305--13307 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 10000) in paragraph at lines 13603--13608 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2068] [2069] [2070] [2071] [2072] [2073] Underfull \hbox (badness 2932) in paragraph at lines 14050--14057 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14050--14057 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2074] [2075] [2076] [2077] Underfull \hbox (badness 6510) in paragraph at lines 14358--14362 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14365--14368 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14365--14368 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 15032--15037 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15032--15037 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2088] Underfull \hbox (badness 10000) in paragraph at lines 15097--15100 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] Underfull \hbox (badness 10000) in paragraph at lines 15875--15877 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2101] [2102] [2103]) [2104] [2105] [2106] (./KernSmooth-pkg.tex Chapter 15. [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116]) (./MASS-pkg.tex Chapter 16. [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2154] [2155] [2156] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2157] [2158] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2184] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2215] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2216] [2217] [2218] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2265] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2266] [2267] [2268] [2269] Underfull \hbox (badness 5119) in paragraph at lines 509--513 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2270] [2271] Underfull \hbox (badness 2035) in paragraph at lines 605--608 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-her-its from class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1 /zi4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2272] [2273] Underfull \hbox (badness 1701) in paragraph at lines 758--762 []\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org / [2274] [2275] Underfull \hbox (badness 5175) in paragraph at lines 877--882 []\T1/ptm/m/n/10 option [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di- cat-ing if the re-sult should be sparse, i.e., for- Underfull \hbox (badness 10000) in paragraph at lines 877--882 \T1/ptm/m/n/10 mally in-her-it-ing from \T1/zi4/m/it/10 "[][]sparseMatrix[][][] "\T1/ptm/m/n/10 . The de-fault, [][]\T1/zi4/m/it/10 NA[][][]\T1/ptm/m/n/10 , de - Underfull \hbox (badness 6675) in paragraph at lines 877--882 \T1/ptm/m/n/10 cides from the ``spar-sity'' of \T1/zi4/m/it/10 x \T1/ptm/m/n/10 and \T1/zi4/m/it/10 y\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m /n/10 code in [2276] [2277] Underfull \hbox (badness 10000) in paragraph at lines 1056--1058 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2278] [2279]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1168 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1168 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1223--1229 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2280] [2281] [2282] Underfull \hbox (badness 2277) in paragraph at lines 1423--1426 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2283] [2284] Underfull \hbox (badness 1097) in paragraph at lines 1595--1598 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1601--1605 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2285]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1658 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1658 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1659 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1680 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1691 \aliasA{rowSums}{colSums}{rowSums} [2286] [2287] [2288] Underfull \hbox (badness 3547) in paragraph at lines 1910--1913 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2289] [2290] [2291] [2292] [2293] Underfull \hbox (badness 1360) in paragraph at lines 2333--2337 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2294] [2295] [2296] [2297] Underfull \hbox (badness 2717) in paragraph at lines 2649--2653 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2298] [2299] Underfull \hbox (badness 6842) in paragraph at lines 2739--2742 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2300] Underfull \hbox (badness 10000) in paragraph at lines 3026--3030 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2301] [2302] [2303] Underfull \hbox (badness 1173) in paragraph at lines 3236--3238 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3283--3285 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2304] [2305] Underfull \hbox (badness 1354) in paragraph at lines 3482--3485 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2306] [2307] [2308] [2309] [2310] Underfull \hbox (badness 6188) in paragraph at lines 3892--3895 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3895--3898 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2311] [2312] Underfull \hbox (badness 2318) in paragraph at lines 4010--4014 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2313] [2314] Underfull \hbox (badness 5245) in paragraph at lines 4146--4150 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2315] [2316] [2317] [2318] [2319] [2320] Overfull \hbox (23.27168pt too wide) in paragraph at lines 4563--4563 []\T1/zi4/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe ll-Boeing/counterx/counterx.html[] Overfull \hbox (8.27782pt too wide) in paragraph at lines 4570--4570 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB /Boeing/msc00726.tar.gz"))))[] [2321] [2322] Underfull \hbox (badness 1931) in paragraph at lines 4802--4804 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2323] [2324] [2325] [2326] [2327] Underfull \hbox (badness 1005) in paragraph at lines 5108--5113 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5108--5113 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5127--5130 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2328] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5175--5175 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2329] Underfull \hbox (badness 3229) in paragraph at lines 5276--5285 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2330] Underfull \hbox (badness 10000) in paragraph at lines 5318--5320 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 4995) in paragraph at lines 5323--5326 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5333--5336 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2331] [2332] [2333] [2334] [2335] Underfull \hbox (badness 1014) in paragraph at lines 5712--5715 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2336] [2337] [2338] [2339] Underfull \hbox (badness 10000) in paragraph at lines 6027--6030 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2340] Underfull \hbox (badness 2478) in paragraph at lines 6139--6144 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2341] Underfull \hbox (badness 10000) in paragraph at lines 6147--6150 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2342] Underfull \hbox (badness 10000) in paragraph at lines 6339--6342 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2343] Underfull \hbox (badness 10000) in paragraph at lines 6437--6440 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2344] Underfull \hbox (badness 10000) in paragraph at lines 6512--6515 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2345] Underfull \hbox (badness 2050) in paragraph at lines 6588--6591 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2346] [2347] [2348] [2349] [2350] Underfull \hbox (badness 6268) in paragraph at lines 6901--6905 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2351]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.7000 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 7093--7095 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode [2352] Underfull \hbox (badness 4846) in paragraph at lines 7098--7101 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 7103--7106 [2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7176 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7284 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7383 ...tcrossprod}{matrix-products}{tcrossprod} [2354] Underfull \hbox (badness 10000) in paragraph at lines 7556--7561 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7556--7561 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7565--7567 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7567--7569 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7571--7572 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2355] [2356] Underfull \hbox (badness 1430) in paragraph at lines 7715--7720 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2357] Underfull \hbox (badness 10000) in paragraph at lines 7786--7789 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2358] Underfull \hbox (badness 10000) in paragraph at lines 7842--7844 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2359] [2360] Underfull \vbox (badness 10000) has occurred while \output is active [2361] Underfull \hbox (badness 2478) in paragraph at lines 8049--8054 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 8057--8060 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2362] [2363] Underfull \hbox (badness 5924) in paragraph at lines 8251--8253 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2364]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8291 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8291 \HeaderA{norm}{Matrix Norms}{norm} [2365] [2366] Underfull \hbox (badness 10000) in paragraph at lines 8564--8567 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2367] Underfull \hbox (badness 10000) in paragraph at lines 8654--8657 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2368] Underfull \hbox (badness 10000) in paragraph at lines 8730--8733 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2369] Underfull \vbox (badness 10000) has occurred while \output is active [2370] Underfull \hbox (badness 10000) in paragraph at lines 8856--8858 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8861--8864 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2371] [2372] [2373] [2374]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.9093 \aliasA{qr}{qr-methods}{qr} [2375] [2376] [2377] [2378]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9419 ... the Reciprocal Condition Number}{rcond} [2379] [2380] [2381] [2382] [2383] Underfull \hbox (badness 2351) in paragraph at lines 9723--9731 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9723--9731 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9723--9731 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2384] [2385] [2386] [2387]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9998 \aliasA{solve}{solve-methods}{solve} [2388] Underfull \hbox (badness 10000) in paragraph at lines 10161--10168 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2389] Underfull \hbox (badness 4403) in paragraph at lines 10222--10225 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10292--10295 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2390] Underfull \hbox (badness 10000) in paragraph at lines 10328--10331 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10339--10343 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2391] [2392] [2393] [2394] [2395] [2396] [2397] [2398] Underfull \hbox (badness 10000) in paragraph at lines 10916--10924 []\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn s an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 10916--10924 \T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x) \T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 10941--10949 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10941--10949 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2399]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.11007 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2400] [2401] Underfull \hbox (badness 5036) in paragraph at lines 11193--11195 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2402] [2403] Underfull \hbox (badness 10000) in paragraph at lines 11400--11403 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2404] Underfull \vbox (badness 10000) has occurred while \output is active [2405] [2406] [2407] Underfull \hbox (badness 10000) in paragraph at lines 11669--11674 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2408] Underfull \hbox (badness 2057) in paragraph at lines 11749--11751 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2409] [2410] Underfull \hbox (badness 10000) in paragraph at lines 11918--11923 []\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[] [][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 11924--11930 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2411] Underfull \hbox (badness 1902) in paragraph at lines 11959--11963 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2412] [2413] [2414] [2415] [2416] [2417] [2418] Underfull \hbox (badness 6910) in paragraph at lines 12558--12560 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2419] Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12605. Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12605. [2420] [2421]) (./boot-pkg.tex [2422] Chapter 18. [2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2433] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2434] Underfull \vbox (badness 10000) has occurred while \output is active [2435] [2436] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2437] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2438] [2439] [2440] [2441] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2442] [2443] [2444] [2445] [2446] [2447] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2448] [2449] Underfull \vbox (badness 10000) has occurred while \output is active [2450] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2451] [2452] [2453] [2454] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2455] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2456] [2457] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2492] [2493] [2494] [2495] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2496] [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] [2506] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525]) (./class-pkg.tex [2526] Chapter 19. [2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536] [2537] [2538] [2539] [2540] [2541] [2542]) (./cluster-pkg.tex Chapter 20. [2543] [2544] [2545] [2546] [2547] Underfull \vbox (badness 7777) has occurred while \output is active [2548] [2549] [2550] [2551] [2552] Underfull \hbox (badness 4144) in paragraph at lines 691--694 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2553] [2554] Underfull \hbox (badness 1412) in paragraph at lines 783--788 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2555] Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2556] [2557] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2558] [2559] [2560] Underfull \hbox (badness 6110) in paragraph at lines 1207--1211 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2561] [2562] [2563] Underfull \hbox (badness 10000) in paragraph at lines 1476--1479 [2564] [2565] Underfull \hbox (badness 2503) in paragraph at lines 1588--1591 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] Underfull \hbox (badness 10000) in paragraph at lines 2182--2185 Underfull \hbox (badness 10000) in paragraph at lines 2196--2202 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2574] [2575] [2576] [2577] Underfull \hbox (badness 6675) in paragraph at lines 2431--2433 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2578] [2579] [2580] [2581] [2582] [2583] [2584] Underfull \hbox (badness 2980) in paragraph at lines 2961--2965 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2585] [2586] [2587] [2588] [2589] [2590] Underfull \hbox (badness 1142) in paragraph at lines 3302--3305 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2591] [2592] Underfull \hbox (badness 1142) in paragraph at lines 3421--3424 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2593] [2594] [2595] Underfull \hbox (badness 2582) in paragraph at lines 3644--3649 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2596] Underfull \hbox (badness 3209) in paragraph at lines 3706--3711 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3706--3711 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2597] [2598] [2599] [2600] [2601] Underfull \hbox (badness 10000) in paragraph at lines 3998--4000 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2602] [2603] [2604] [2605] Underfull \hbox (badness 2626) in paragraph at lines 4227--4232 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2606] Underfull \hbox (badness 1383) in paragraph at lines 4305--4310 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2607] [2608] [2609] [2610] [2611] [2612] [2613] Underfull \hbox (badness 10000) in paragraph at lines 4748--4750 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2614] [2615]) (./codetools-pkg.tex [2616] Chapter 21. [2617] [2618] [2619] [2620] [2621]) (./foreign-pkg.tex [2622] Chapter 22. [2623] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2624] [2625] [2626] [2627] [2628] [2629] [2630] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 7133) in paragraph at lines 550--558 []\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][] [2631] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2632] [2633] [2634] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2635] [2636] [2637] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2638] [2639] [2640] [2641] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2642] [2643]) (./lattice-pkg.tex [2644] Chapter 23. [2645] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2661] Underfull \vbox (badness 4416) has occurred while \output is active [2662] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2663] [2664] [2665] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2666] [2667] [2668] [2669] [2670] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680] Underfull \hbox (badness 2781) in paragraph at lines 2849--2851 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2681] [2682] Underfull \hbox (badness 2486) in paragraph at lines 3001--3005 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2683] [2684] [2685] [2686] [2687] [2688]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.parallel}) has been already used, duplicate ign ored \relax l.3475 \aliasA{parallel}{B\_08\_splom}{parallel} [2689] [2690] [2691] [2692] [2693] [2694] [2695] [2696] Underfull \hbox (badness 5696) in paragraph at lines 3970--3974 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3970--3974 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3970--3974 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2697] Underfull \hbox (badness 1173) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in [2698] Underfull \hbox (badness 3219) in paragraph at lines 4136--4138 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2699] [2700] Underfull \hbox (badness 3492) in paragraph at lines 4336--4346 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , [2701] Underfull \hbox (badness 10000) in paragraph at lines 4361--4364 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4364--4366 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] Underfull \hbox (badness 6157) in paragraph at lines 5087--5090 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2711] [2712] [2713] [2714] [2715] [2716] [2717] Underfull \hbox (badness 10000) in paragraph at lines 5545--5548 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5545--5548 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 4805) in paragraph at lines 5907--5911 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5918--5925 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5918--5925 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5918--5925 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5918--5925 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5918--5925 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2723] [2724] [2725] [2726] Underfull \hbox (badness 4242) in paragraph at lines 6218--6223 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6218--6223 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2727] [2728] Underfull \hbox (badness 2310) in paragraph at lines 6334--6339 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739] Underfull \hbox (badness 3168) in paragraph at lines 7116--7120 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2740] [2741] [2742] [2743] Underfull \hbox (badness 2012) in paragraph at lines 7387--7390 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2744] [2745] Underfull \hbox (badness 3333) in paragraph at lines 7559--7561 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2746] [2747] [2748] Underfull \vbox (badness 10000) has occurred while \output is active [2749] [2750] [2751] Underfull \hbox (badness 1436) in paragraph at lines 7973--7979 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759] Underfull \hbox (badness 10000) in paragraph at lines 8531--8534 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2760] Underfull \hbox (badness 1092) in paragraph at lines 8577--8579 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2761] [2762] Underfull \hbox (badness 3895) in paragraph at lines 8738--8741 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2763] Underfull \hbox (badness 1515) in paragraph at lines 8814--8818 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2764] [2765] Underfull \hbox (badness 6316) in paragraph at lines 8920--8925 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8937--8940 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2766] [2767] [2768] [2769] Overfull \hbox (5.28876pt too wide) in paragraph at lines 9228--9232 []\T1/ptm/m/n/10 Returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2770] [2771] [2772] [2773] [2774] [2775] [2776] Underfull \hbox (badness 2310) in paragraph at lines 9692--9696 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9697--9700 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2777] [2778] [2779]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9923 \aliasA{melanoma}{H\_melanoma}{melanoma} [2780] [2781] [2782] Underfull \hbox (badness 4144) in paragraph at lines 10147--10150 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10147--10150 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2783] [2784]) (./mgcv-pkg.tex Chapter 24. [2785] [2786] [2787] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2788] [2789] [2790] [2791] Underfull \hbox (badness 10000) in paragraph at lines 378--385 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 378--385 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2792] [2793] [2794] [2795] [2796] Underfull \hbox (badness 1406) in paragraph at lines 703--704 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2797] [2798] [2799] Underfull \hbox (badness 1158) in paragraph at lines 813--815 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion Underfull \hbox (badness 1259) in paragraph at lines 876--877 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2800] [2801] [2802] [2803] [2804] Underfull \hbox (badness 1281) in paragraph at lines 1160--1161 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2805] [2806] Underfull \vbox (badness 10000) has occurred while \output is active [2807] Underfull \vbox (badness 10000) has occurred while \output is active [2808] [2809] Underfull \vbox (badness 10000) has occurred while \output is active [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] Underfull \hbox (badness 1142) in paragraph at lines 2361--2365 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2387--2392 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2826] [2827] [2828] [2829] [2830] [2831] Underfull \vbox (badness 10000) has occurred while \output is active [2832] Underfull \vbox (badness 10000) has occurred while \output is active [2833] [2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 10000) in paragraph at lines 3822--3826 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2850] [2851] Underfull \vbox (badness 10000) has occurred while \output is active [2852] [2853] [2854] Underfull \hbox (badness 1184) in paragraph at lines 4108--4112 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] [2863] [2864] [2865] [2866] Underfull \hbox (badness 1142) in paragraph at lines 4829--4833 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2867] Underfull \hbox (badness 1231) in paragraph at lines 4933--4935 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2868] [2869] [2870] Underfull \vbox (badness 10000) has occurred while \output is active [2871] [2872] [2873] [2874] Underfull \hbox (badness 2181) in paragraph at lines 5377--5378 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2875] [2876] [2877] [2878] [2879] [2880] [2881] Underfull \hbox (badness 10000) in paragraph at lines 5766--5767 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] Underfull \hbox (badness 1142) in paragraph at lines 6351--6355 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2893] [2894] [2895] Underfull \vbox (badness 10000) has occurred while \output is active [2896] [2897] [2898] [2899] Underfull \hbox (badness 1087) in paragraph at lines 6723--6724 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2900] [2901] Underfull \vbox (badness 10000) has occurred while \output is active [2902] Underfull \vbox (badness 10000) has occurred while \output is active [2903] [2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914] [2915] Underfull \hbox (badness 1242) in paragraph at lines 7672--7673 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \hbox (badness 6001) in paragraph at lines 8312--8314 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935] [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] Underfull \hbox (badness 1038) in paragraph at lines 9061--9064 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9061--9064 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2939] Underfull \hbox (badness 10000) in paragraph at lines 9117--9120 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] Underfull \hbox (badness 1852) in paragraph at lines 9790--9793 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2951] [2952] [2953] Underfull \hbox (badness 1852) in paragraph at lines 9959--9962 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] Underfull \hbox (badness 1205) in paragraph at lines 10191--10193 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10191--10193 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10197--10202 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2958] Underfull \hbox (badness 1205) in paragraph at lines 10281--10283 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10281--10283 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2959] [2960] [2961] Underfull \hbox (badness 1253) in paragraph at lines 10480--10482 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2962] [2963] [2964] [2965] [2966] [2967] Underfull \hbox (badness 4792) in paragraph at lines 10741--10744 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10741--10744 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2968] Underfull \hbox (badness 10000) in paragraph at lines 10848--10851 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] [2978] [2979] [2980] [2981] Underfull \vbox (badness 10000) has occurred while \output is active [2982] Underfull \hbox (badness 3861) in paragraph at lines 11637--11640 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2983] [2984] Underfull \hbox (badness 1320) in paragraph at lines 11752--11757 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2985] Underfull \hbox (badness 1975) in paragraph at lines 11858--11863 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2986] [2987] Underfull \hbox (badness 1762) in paragraph at lines 11947--11959 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2988] [2989] [2990] Underfull \hbox (badness 7667) in paragraph at lines 12159--12165 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2991] Underfull \hbox (badness 10000) in paragraph at lines 12200--12201 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2992] [2993] [2994] [2995] Underfull \vbox (badness 10000) has occurred while \output is active [2996] Underfull \hbox (badness 10000) in paragraph at lines 12477--12479 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2997] [2998] Underfull \hbox (badness 10000) in paragraph at lines 12607--12608 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2999] [3000] [3001] Underfull \hbox (badness 1436) in paragraph at lines 12745--12752 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [3002] [3003] Underfull \hbox (badness 10000) in paragraph at lines 12840--12841 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011] [3012] [3013] Underfull \hbox (badness 10000) in paragraph at lines 13441--13447 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13441--13447 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [3014] [3015] [3016] Underfull \vbox (badness 10000) has occurred while \output is active [3017] Underfull \vbox (badness 10000) has occurred while \output is active [3018] [3019] Underfull \hbox (badness 10000) in paragraph at lines 13784--13785 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3020] [3021] [3022] [3023] Underfull \hbox (badness 3895) in paragraph at lines 14044--14047 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3024] Underfull \hbox (badness 10000) in paragraph at lines 14089--14091 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3025] [3026] [3027] [3028] [3029] Underfull \hbox (badness 1371) in paragraph at lines 14363--14369 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14403--14407 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14403--14407 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14403--14407 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3030] [3031] [3032] [3033] Underfull \hbox (badness 2326) in paragraph at lines 14608--14615 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3034] Underfull \hbox (badness 2158) in paragraph at lines 14693--14693 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] Underfull \hbox (badness 1796) in paragraph at lines 16345--16348 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071]) (./nlme-pkg.tex [3072] Chapter 25. [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] Underfull \hbox (badness 2875) in paragraph at lines 1996--2002 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1996--2002 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3103] [3104] [3105] [3106] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed ...shipout:D \box_use:N \l_shipout_box l.3194 ] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] Underfull \hbox (badness 1067) in paragraph at lines 4419--4424 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150] [3151] Underfull \hbox (badness 10000) in paragraph at lines 5165--5169 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3152] [3153] [3154] [3155] [3156] [3157] [3158] Underfull \hbox (badness 10000) in paragraph at lines 5597--5600 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3159] [3160] [3161] [3162] [3163] [3164] [3165] Underfull \hbox (badness 10000) in paragraph at lines 5978--5983 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3166] [3167] [3168] [3169] Underfull \hbox (badness 1490) in paragraph at lines 6248--6259 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3170] Underfull \hbox (badness 10000) in paragraph at lines 6312--6314 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. 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D e-fault is [3177] [3178] [3179] [3180] Underfull \hbox (badness 10000) in paragraph at lines 6999--7006 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3181] [3182] [3183] [3184] Underfull \hbox (badness 10000) in paragraph at lines 7259--7264 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] Underfull \hbox (badness 10000) in paragraph at lines 8527--8529 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3204]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8578 \aliasA{sigma}{lmeObject}{sigma} [3205] [3206] [3207] [3208] Underfull \hbox (badness 10000) in paragraph at lines 8808--8815 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] Underfull \hbox (badness 10000) in paragraph at lines 9330--9337 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3217] [3218] [3219] [3220] [3221]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] Underfull \hbox (badness 1596) in paragraph at lines 10465--10491 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3234] [3235] Underfull \hbox (badness 1490) in paragraph at lines 10603--10609 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3236] [3237] [3238] [3239] Underfull \hbox (badness 10000) in paragraph at lines 10844--10846 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] Underfull \hbox (badness 1286) in paragraph at lines 13742--13749 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289] Underfull \hbox (badness 1215) in paragraph at lines 14288--14290 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] [3301] [3302]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] Underfull \hbox (badness 3884) in paragraph at lines 15825--15829 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15825--15829 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15825--15829 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3313] [3314] Underfull \hbox (badness 1067) in paragraph at lines 15937--15942 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3315] [3316] [3317] [3318] Underfull \hbox (badness 1448) in paragraph at lines 16180--16189 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 1728) in paragraph at lines 16885--16888 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3329] [3330] [3331] [3332] [3333] Underfull \hbox (badness 8056) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3334] [3335] [3336] [3337] [3338] Underfull \hbox (badness 10000) in paragraph at lines 17542--17550 [][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , [] []\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 , [3339] [3340] [3341] [3342] [3343] [3344] [3345] [3346] [3347] [3348] Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3349] [3350] [3351] [3352] [3353] Underfull \hbox (badness 5036) in paragraph at lines 18576--18585 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3367] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3368] [3369] [3370] [3371] [3372] [3373] [3374]) (./rpart-pkg.tex Chapter 27. [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403]) (./spatial-pkg.tex [3404] Chapter 28. [3405] [3406] [3407] [3408] [3409] [3410] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423]) (./survival-pkg.tex [3424] Chapter 29. [3425] [3426] [3427] [3428] Underfull \hbox (badness 6412) in paragraph at lines 282--284 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3429] [3430]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} [3431] [3432] [3433] [3434] Overfull \vbox (3.85637pt too high) has occurred while \output is active [3435] [3436] [3437] [3438] [3439] [3440] [3441] Underfull \hbox (badness 1097) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3442] [3443] [3444]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1308 ...erapy for Stage B/C colon cancer}{colon} [3445] Underfull \hbox (badness 10000) in paragraph at lines 1356--1360 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453] Underfull \hbox (badness 10000) in paragraph at lines 1940--1955 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1940--1955 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1940--1955 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1940--1955 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] [3468] [3469] Overfull \vbox (31.18587pt too high) has occurred while \output is active [3470] [3471] [3472] Underfull \hbox (badness 1389) in paragraph at lines 3300--3302 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3473] [3474] [3475] [3476] Overfull \hbox (467.89665pt too wide) in alignment at lines 3586--3586 [] [] Underfull \vbox (badness 10000) has occurred while \output is active [3477] Overfull \vbox (8.56093pt too high) has occurred while \output is active [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488] [3489] [3490] [3491] Overfull \vbox (11.01616pt too high) has occurred while \output is active [3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502] Underfull \hbox (badness 5274) in paragraph at lines 5316--5318 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515] [3516] [3517] [3518] [3519] Underfull \hbox (badness 1281) in paragraph at lines 6540--6543 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.7092 ...ata from a soldering experiment}{solder} [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541] [3542] [3543] [3544] [3545] [3546] Underfull \hbox (badness 10000) in paragraph at lines 8422--8431 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3547] [3548] Underfull \hbox (badness 1038) in paragraph at lines 8578--8584 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3549] [3550] [3551] [3552] [3553] Underfull \hbox (badness 10000) in paragraph at lines 8941--8946 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564] [3565] Underfull \hbox (badness 1354) in paragraph at lines 9860--9864 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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at lines 5910--5912 []\T1/zi4/m/it/10 Arith,triangularMatrix,diagonalMatrix-method [3642] [3643] [3644] Overfull \hbox (15.01662pt too wide) in paragraph at lines 6567--6569 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3645] [3646] [3647] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7233--7235 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7235--7237 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7265--7267 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7267--7269 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7273--7275 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3648] [3649] [3650] [3651] Overfull \hbox (10.8567pt too wide) in 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too wide) in paragraph at lines 9985--9987 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3667] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10326--10328 []\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 10328--10330 []\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 10336--10338 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 10350--10352 []\T1/zi4/m/it/10 determinant,dsparseMatrix,logical-method [3668] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10370--10372 []\T1/zi4/m/it/10 determinant,sparseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 10372--10374 []\T1/zi4/m/it/10 determinant,sparseMatrix,missing-method [3669] [3670] [3671] Overfull \hbox (15.01662pt too wide) in paragraph at lines 11102--11104 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3672] [3673] Overfull \hbox (15.01662pt too wide) in paragraph at lines 11620--11622 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3674] [3675] Overfull \hbox (15.8567pt too wide) in paragraph at lines 11964--11966 []\T1/zi4/m/it/10 forceSymmetric,corMatrix,character-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 11966--11968 []\T1/zi4/m/it/10 forceSymmetric,corMatrix,missing-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 11968--11970 []\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,ANY-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 11970--11972 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,character-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 11972--11974 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,missing-method Overfull \hbox (15.8567pt too 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forceSymmetric,nsTMatrix,character-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 12040--12042 []\T1/zi4/m/it/10 forceSymmetric,nsTMatrix,missing-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 12042--12044 []\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,character-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 12044--12046 []\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 12046--12048 []\T1/zi4/m/it/10 forceSymmetric,sparseMatrix,ANY-method [3677] [3678] [3679] Overfull \hbox (15.01662pt too wide) in paragraph at lines 12981--12983 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3680] [3681] [3682] [3683] [3684] [3685] [3686] [3687] Overfull \hbox (0.8567pt too wide) in paragraph at lines 14517--14519 []\T1/zi4/m/it/10 kronecker,diagonalMatrix,Matrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 14519--14521 []\T1/zi4/m/it/10 kronecker,dsparseMatrix,dsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 14529--14531 []\T1/zi4/m/it/10 kronecker,Matrix,diagonalMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 14533--14535 []\T1/zi4/m/it/10 kronecker,sparseMatrix,TsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 14535--14537 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,sparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 14537--14539 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method [3688] [3689] [3690] Overfull \hbox (10.8567pt too wide) in paragraph at lines 15350--15352 []\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method [3691] Overfull \hbox (5.8567pt too wide) in paragraph at lines 15358--15360 []\T1/zi4/m/it/10 Logic,ldenseMatrix,lsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 15382--15384 []\T1/zi4/m/it/10 Logic,lsparseMatrix,ldenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15384--15386 []\T1/zi4/m/it/10 Logic,lsparseMatrix,lsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15386--15388 []\T1/zi4/m/it/10 Logic,lsparseVector,lsparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15408--15410 []\T1/zi4/m/it/10 Logic,nsparseVector,nsparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 15422--15424 []\T1/zi4/m/it/10 Logic,sparseVector,sparseVector-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 15424--15426 []\T1/zi4/m/it/10 Logic,triangularMatrix,diagonalMatrix-method [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] Overfull \hbox (10.8567pt too wide) in paragraph at lines 17360--17362 []\T1/zi4/m/it/10 Ops,diagonalMatrix,diagonalMatrix-method [3700] Overfull \hbox (0.8567pt too wide) in paragraph at lines 17362--17364 []\T1/zi4/m/it/10 Ops,diagonalMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 17364--17366 []\T1/zi4/m/it/10 Ops,diagonalMatrix,triangularMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17384--17386 []\T1/zi4/m/it/10 Ops,dsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17422--17424 []\T1/zi4/m/it/10 Ops,lsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17424--17426 []\T1/zi4/m/it/10 Ops,lsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17456--17458 []\T1/zi4/m/it/10 Ops,nsparseMatrix,dsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17458--17460 []\T1/zi4/m/it/10 Ops,nsparseMatrix,lsparseMatrix-method [3701] Overfull \hbox (0.8567pt too wide) in paragraph at lines 17482--17484 []\T1/zi4/m/it/10 Ops,sparseMatrix,diagonalMatrix-method [3702] Overfull \hbox (15.01662pt too wide) in paragraph at lines 17703--17705 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (33.3567pt too wide) in paragraph at lines 17729--17731 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [3703] [3704] [3705] [3706] [3707] Overfull \hbox (15.01662pt too wide) in paragraph at lines 19035--19037 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19042--19044 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19044--19046 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19046--19048 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (20.01662pt too wide) in paragraph at lines 19048--19050 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19052--19054 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.re.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (20.01662pt too wide) in paragraph at lines 19058--19060 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3708] [3709] [3710] [3711] [3712] Overfull \hbox (0.8567pt too wide) in paragraph at lines 19970--19972 []\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method [3713] Overfull \hbox (20.8567pt too wide) in paragraph at lines 20141--20143 []\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [3714] Overfull \hbox (0.8567pt too wide) in paragraph at lines 20371--20373 []\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 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smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 22163--22165 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 22169--22171 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 22177--22179 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3724] [3725] Overfull \hbox (10.8567pt too wide) in paragraph at lines 22397--22399 []\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 22399--22401 []\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method Overfull \hbox (20.01662pt too wide) in paragraph at lines 22559--22561 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3726] [3727] Overfull \hbox (5.8567pt too wide) in paragraph at lines 23002--23004 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 23004--23006 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 23006--23008 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [3728] [3729] [3730] [3731] [3732] Overfull \hbox (35.8567pt too wide) in paragraph at lines 23898--23900 []\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 23900--23902 []\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,ddenseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 23902--23904 []\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 23904--23906 []\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,matrix-method Overfull \hbox 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[3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . 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The mo st gen-eral form (from RFC1738) is [103] [104] Underfull \hbox (badness 6063) in paragraph at lines 7202--7208 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [105] Underfull \hbox (badness 1303) in paragraph at lines 7264--7271 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the Underfull \hbox (badness 2111) in paragraph at lines 7275--7280 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [106] [107] Underfull \vbox (badness 10000) has occurred while \output is active [108] [109] [110] Underfull \hbox (badness 1077) in paragraph at lines 7593--7599 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7593--7599 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [111] [112] [113] [114] [115] Underfull \hbox (badness 2096) in paragraph at lines 7948--7952 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [116] [117] Underfull \hbox (badness 2351) in paragraph at lines 8062--8065 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [118] [119] [120] [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 8388--8399 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] Underfull \hbox (badness 1629) in paragraph at lines 8839--8851 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 6396) in paragraph at lines 11228--11236 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11228--11236 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 4569) in paragraph at lines 12377--12381 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12377--12381 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] Underfull \hbox (badness 2253) in paragraph at lines 14062--14064 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [201] Underfull \hbox (badness 1565) in paragraph at lines 14138--14142 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [202] Underfull \hbox (badness 4927) in paragraph at lines 14182--14184 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [203] Underfull \hbox (badness 3148) in paragraph at lines 14284--14289 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [204] Underfull \hbox (badness 1466) in paragraph at lines 14331--14334 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [205] [206] Underfull \hbox (badness 10000) in paragraph at lines 14458--14462 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14469--14472 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [207] [208] [209] [210] Underfull \hbox (badness 3965) in paragraph at lines 14766--14770 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] Underfull \hbox (badness 4429) in paragraph at lines 15546--15549 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [223] Underfull \hbox (badness 10000) in paragraph at lines 15652--15654 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15652--15654 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15674--15679 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15674--15679 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15686--15690 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15686--15690 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [224] Underfull \hbox (badness 2035) in paragraph at lines 15725--15729 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [225] Underfull \vbox (badness 10000) has occurred while \output is active [226] [227] [228] [229] [230] [231] [232] [233] Underfull \hbox (badness 2452) in paragraph at lines 16338--16342 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16338--16342 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [234] [235] [236] Underfull \hbox (badness 1092) in paragraph at lines 16511--16516 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [237] [238] [239] Underfull \hbox (badness 6741) in paragraph at lines 16764--16768 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [240] [241] [242] [243] [244] [245] [246] [247] [248] Underfull \vbox (badness 10000) has occurred while \output is active [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] Underfull \hbox (badness 1478) in paragraph at lines 18113--18116 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [259] [260] [261] Underfull \hbox (badness 10000) in paragraph at lines 18381--18383 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [262] [263] [264] [265] [266] [267] [268] [269] [270] Underfull \hbox (badness 1442) in paragraph at lines 18980--18982 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [271] [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19311--19317 [276] [277] [278] Underfull \hbox (badness 1248) in paragraph at lines 19556--19559 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [279] [280] [281] [282] Underfull \hbox (badness 4739) in paragraph at lines 19819--19821 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [283] [284] [285] [286] Underfull \hbox (badness 1603) in paragraph at lines 20046--20049 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [287] [288] [289] Underfull \hbox (badness 1596) in paragraph at lines 20273--20278 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] Underfull \hbox (badness 2469) in paragraph at lines 20878--20883 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [300] Underfull \hbox (badness 10000) in paragraph at lines 20972--20976 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory [301] [302] Underfull \hbox (badness 1014) in paragraph at lines 21142--21147 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314] Underfull \hbox (badness 1264) in paragraph at lines 21991--21996 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [315] Underfull \hbox (badness 4441) in paragraph at lines 22020--22023 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [316] [317] [318] [319] [320] [321] [322] [323] [324] [325] Underfull \hbox (badness 6047) in paragraph at lines 22794--22796 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [343] [344] [345] [346] [347] [348] [349] [350] Underfull \hbox (badness 2790) in paragraph at lines 24375--24378 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24375--24378 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [351] [352] [353] Underfull \hbox (badness 1194) in paragraph at lines 24664--24667 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [354] [355] [356] Underfull \hbox (badness 2368) in paragraph at lines 24871--24877 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24871--24877 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [357] [358] [359] [360] [361] [362] Underfull \hbox (badness 10000) in paragraph at lines 25256--25259 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [363] [364] [365] [366] [367] [368] [369] [370] [371] Underfull \hbox (badness 10000) in paragraph at lines 25876--25878 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 1038) in paragraph at lines 26737--26745 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26746--26749 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26770--26772 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [384] [385] Underfull \hbox (badness 2142) in paragraph at lines 26911--26915 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26968--26973 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [386] [387] [388] Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27275--27278 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [389] Underfull \hbox (badness 2689) in paragraph at lines 27301--27303 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27336--27341 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27354--27357 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [390] [391] [392] [393] [394] [395] [396] [397] Underfull \hbox (badness 10000) in paragraph at lines 27901--27904 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [398] Underfull \hbox (badness 7925) in paragraph at lines 27982--27986 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27982--27986 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27987--27996 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] Underfull \hbox (badness 2726) in paragraph at lines 28935--28938 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] Underfull \hbox (badness 1603) in paragraph at lines 29685--29688 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [424] [425] [426] [427] [428] [429] Underfull \vbox (badness 10000) has occurred while \output is active [430] [431] [432] [433] [434] [435] [436] [437] Underfull \hbox (badness 1533) in paragraph at lines 30713--30716 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [438] [439] Underfull \hbox (badness 1163) in paragraph at lines 30876--30887 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] Underfull \vbox (badness 10000) has occurred while \output is active [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] Underfull \hbox (badness 10000) in paragraph at lines 32539--32543 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32539--32543 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [464] Underfull \hbox (badness 3557) in paragraph at lines 32560--32562 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32563--32567 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [465] [466] [467] [468] [469] [470] [471] [472] Underfull \hbox (badness 1655) in paragraph at lines 33157--33159 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] Underfull \hbox (badness 2261) in paragraph at lines 34349--34354 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 34376--34382 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 34376--34382 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] Underfull \hbox (badness 10000) in paragraph at lines 36987--36989 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [528] [529] [530] [531] [532] [533] [534] [535] Underfull \hbox (badness 1072) in paragraph at lines 37584--37588 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37589--37593 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37634--37641 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [536] [537] [538] [539] Underfull \hbox (badness 2644) in paragraph at lines 37866--37870 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [540] [541] Underfull \hbox (badness 1142) in paragraph at lines 38018--38024 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] Underfull \hbox (badness 1565) in paragraph at lines 39297--39299 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [560] [561] [562] [563] [564] [565] [566] [567] [568] Underfull \hbox (badness 1137) in paragraph at lines 39887--39893 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39906--39911 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [569] [570] Underfull \hbox (badness 1616) in paragraph at lines 40026--40031 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [571] [572] [573] [574] [575] [576] [577] [578] Underfull \hbox (badness 1472) in paragraph at lines 40568--40571 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] Underfull \hbox (badness 10000) in paragraph at lines 41487--41491 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [592] [593] [594] [595] Underfull \hbox (badness 10000) in paragraph at lines 41738--41741 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [596] [597] [598] Underfull \hbox (badness 10000) in paragraph at lines 41922--41926 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [599] [600] [601] [602] [603] [604] [605] [606] Underfull \hbox (badness 10000) in paragraph at lines 42547--42550 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] Underfull \hbox (badness 1990) in paragraph at lines 43469--43477 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43469--43477 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 1917) in paragraph at lines 43975--43982 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 2452) in paragraph at lines 44428--44434 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [634] [635] [636] [637] [638] [639] Underfull \hbox (badness 3668) in paragraph at lines 44802--44804 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [640] Underfull \hbox (badness 2401) in paragraph at lines 44932--44936 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [641] [642] [643] Underfull \hbox (badness 2111) in paragraph at lines 45139--45144 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. [644] Underfull \hbox (badness 10000) in paragraph at lines 45160--45165 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [645] [646] [647] Underfull \hbox (badness 4001) in paragraph at lines 45385--45387 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [648] [649] [650] [651] [652] Underfull \hbox (badness 5417) in paragraph at lines 45750--45754 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [653] Underfull \hbox (badness 10000) in paragraph at lines 45811--45815 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [654]) (./compiler-pkg.tex Chapter 2. [655] [656] [657] [658]) (./datasets-pkg.tex Chapter 3. [659] [660] [661] [662] [663] [664] Underfull \vbox (badness 1472) has occurred while \output is active [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] Overfull \vbox (4.26088pt too high) has occurred while \output is active [696] [697] [698] [699] [700] [701] Overfull \vbox (13.87083pt too high) has occurred while \output is active [702] Underfull \vbox (badness 2376) has occurred while \output is active [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Overfull \vbox (10.49593pt too high) has occurred while \output is active [719] Overfull \vbox (15.49593pt too high) has occurred while \output is active [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]) (./grDevices-pkg.tex Chapter 4. [735] [736] [737] [738] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [739] [740] [741] [742] [743] [744] [745] [746] [747] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [748] [749] [750] [751] [752] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [753] [754] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [755] Underfull \hbox (badness 1852) in paragraph at lines 1405--1408 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [756] [757] [758] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [759] [760] [761] [762] [763] [764] Underfull \hbox (badness 1325) in paragraph at lines 2017--2027 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [765] Underfull \hbox (badness 10000) in paragraph at lines 2129--2131 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [766] [767] [768] Underfull \hbox (badness 6758) in paragraph at lines 2308--2311 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 10000) in paragraph at lines 2919--2920 Underfull \vbox (badness 10000) has occurred while \output is active [778] [779] [780] [781] [782] [783] [784] [785] Underfull \hbox (badness 10000) in paragraph at lines 3493--3498 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [786] [787] [788] [789] [790] [791] [792] Underfull \vbox (badness 10000) has occurred while \output is active [793] Underfull \hbox (badness 10000) in paragraph at lines 3992--3995 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4732--4737 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [804] Underfull \vbox (badness 10000) has occurred while \output is active [805] [806] Underfull \hbox (badness 1584) in paragraph at lines 4888--4890 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4892--4899 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [807] [808] [809] [810] Underfull \hbox (badness 1377) in paragraph at lines 5198--5203 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [811] Underfull \hbox (badness 1418) in paragraph at lines 5274--5281 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5292--5294 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [812] Underfull \hbox (badness 1377) in paragraph at lines 5403--5408 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [813] Underfull \hbox (badness 7344) in paragraph at lines 5472--5474 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [814] [815] Underfull \hbox (badness 2035) in paragraph at lines 5610--5619 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [816] [817] Underfull \hbox (badness 10000) in paragraph at lines 5678--5680 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [818] [819] Underfull \hbox (badness 1546) in paragraph at lines 5820--5828 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [820] [821] [822] [823] [824] [825] [826] [827] Underfull \hbox (badness 10000) in paragraph at lines 6358--6361 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 1189) in paragraph at lines 7184--7186 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [840] Underfull \hbox (badness 10000) in paragraph at lines 7289--7291 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [841] [842] [843] [844] [845] Underfull \hbox (badness 3780) in paragraph at lines 7603--7609 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [846] [847] Underfull \hbox (badness 2680) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [848] [849] [850]) (./graphics-pkg.tex Chapter 5. [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [866] [867] [868] [869] [870] [871] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \hbox (badness 1728) in paragraph at lines 2333--2335 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [887] Underfull \hbox (badness 1009) in paragraph at lines 2426--2433 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] Underfull \vbox (badness 10000) has occurred while \output is active [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] Underfull \hbox (badness 3229) in paragraph at lines 4602--4607 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [921] [922] [923] [924] Underfull \hbox (badness 10000) in paragraph at lines 5032--5038 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5032--5038 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [925] [926] Underfull \hbox (badness 10000) in paragraph at lines 5163--5166 [927 ] Underfull \hbox (badness 10000) in paragraph at lines 5224--5226 [928 ] [929] Underfull \hbox (badness 10000) in paragraph at lines 5414--5416 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [930] [931] [932] [933] [934] [935] [936] [937]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5896 \aliasA{plot}{plot.default}{plot} [938] [939] [940] [941] [942] [943] [944] [945] [946] [947] [948] [949] [950] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802 [][] [951 ] [952] Underfull \vbox (badness 10000) has occurred while \output is active [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] Underfull \hbox (badness 2012) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] Underfull \hbox (badness 10000) in paragraph at lines 8889--8891 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8891--8893 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [983]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8971 \HeaderA{units}{Graphical Units}{units} [984] [985] [986] [987]) (./grid-pkg.tex [988] Chapter 6. [989] [990] [991] [992] [993] [994] [995] [996] Underfull \hbox (badness 2680) in paragraph at lines 486--489 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] Underfull \hbox (badness 4279) in paragraph at lines 1112--1121 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1006] Underfull \vbox (badness 10000) has occurred while \output is active [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] Underfull \vbox (badness 10000) has occurred while \output is active [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] Underfull \hbox (badness 1067) in paragraph at lines 4537--4540 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1060] [1061] [1062] [1063] Underfull \hbox (badness 7256) in paragraph at lines 4782--4784 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] Underfull \hbox (badness 1824) in paragraph at lines 6753--6756 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1095] [1096] [1097] [1098]) (./methods-pkg.tex Chapter 7. [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] Underfull \vbox (badness 10000) has occurred while \output is active [1107] Underfull \vbox (badness 10000) has occurred while \output is active [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1125] [1126] [1127] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1128] [1129] [1130] [1131] [1132] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1133] [1134] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1135] [1136] [1137] [1138] [1139] [1140] [1141] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1147] [1148] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] Underfull \vbox (badness 10000) has occurred while \output is active [1167] Underfull \vbox (badness 10000) has occurred while \output is active [1168] [1169] [1170] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1171] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1172] [1173] [1174] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1183] [1184] [1185] [1186] Underfull \vbox (badness 10000) has occurred while \output is active [1187] [1188] [1189]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1190] [1191] [1192]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1193] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1194] [1195] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1229] [1230] [1231] [1232] [1233] [1234] [1235] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1236] [1237] [1238]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1239] [1240] [1241] [1242] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] Underfull \hbox (badness 3386) in paragraph at lines 1401--1404 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1259] [1260] [1261]) (./splines-pkg.tex [1262] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276]) (./stats-pkg.tex Chapter 10. [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1290] [1291] [1292] [1293] [1294] [1295] [1296] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1297] [1298] [1299] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1342] [1343] [1344] [1345] [1346] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1356] [1357] [1358] [1359] [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] Underfull \vbox (badness 10000) has occurred while \output is active [1408] [1409] [1410] [1411] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1412] [1413] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1433] [1434] [1435] [1436] [1437] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1438] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1439] [1440] [1441] [1442] [1443] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1452] [1453] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] Underfull \hbox (badness 10000) in paragraph at lines 12650--12652 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1463] [1464] [1465] [1466] [1467] Underfull \hbox (badness 2894) in paragraph at lines 12986--12990 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] Underfull \hbox (badness 4518) in paragraph at lines 13737--13742 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] Underfull \hbox (badness 4518) in paragraph at lines 14390--14395 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1489] [1490] Underfull \hbox (badness 8151) in paragraph at lines 14528--14532 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14535--14537 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] Underfull \hbox (badness 2503) in paragraph at lines 15611--15615 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] Underfull \hbox (badness 10000) in paragraph at lines 16124--16130 []\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16124--16130 \T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response (m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s ums any terms [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 1158) in paragraph at lines 17767--17770 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm /m/n/10 as the data ar-gu-ment. The ac- [1540] [1541] Underfull \vbox (badness 10000) has occurred while \output is active [1542] Underfull \vbox (badness 10000) has occurred while \output is active [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 1377) in paragraph at lines 18790--18795 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on [1555] Underfull \hbox (badness 1735) in paragraph at lines 18795--18798 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18808--18812 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18808--18812 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18816--18820 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1556] [1557] [1558] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1559] [1560] [1561] [1562] [1563] [1564] [1565] Underfull \hbox (badness 1337) in paragraph at lines 19503--19506 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] Underfull \hbox (badness 3049) in paragraph at lines 20001--20005 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1574] [1575] [1576] [1577] Underfull \hbox (badness 1194) in paragraph at lines 20264--20267 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1578] [1579] [1580] [1581] [1582] [1583] [1584] Underfull \hbox (badness 2503) in paragraph at lines 20643--20646 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20670--20672 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] Underfull \hbox (badness 10000) in paragraph at lines 21748--21754 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 1337) in paragraph at lines 23105--23111 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1622] [1623] [1624] [1625] [1626] [1627] [1628] Underfull \hbox (badness 3780) in paragraph at lines 23530--23533 []\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th e pre-ci-sion to use when for-mat- Underfull \hbox (badness 1152) in paragraph at lines 23530--23533 \T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s ions up to 4.0.x, this had been set to [1629] [1630] Underfull \hbox (badness 10000) in paragraph at lines 23671--23672 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1631] [1632] [1633] [1634] Underfull \hbox (badness 10000) in paragraph at lines 23955--23958 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23955--23958 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] Underfull \hbox (badness 1824) in paragraph at lines 24632--24638 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24632--24638 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 24653--24656 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = [1645] Underfull \hbox (badness 3690) in paragraph at lines 24722--24726 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 2165) in paragraph at lines 25234--25239 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] Underfull \hbox (badness 1867) in paragraph at lines 25439--25441 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25454--25458 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \vbox (badness 10000) has occurred while \output is active [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] Underfull \vbox (badness 10000) has occurred while \output is active [1679] [1680] Underfull \hbox (badness 3514) in paragraph at lines 27017--27022 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] [1682] [1683] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1684] Underfull \hbox (badness 3514) in paragraph at lines 27287--27293 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1685] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1686] [1687] [1688] Underfull \hbox (badness 3514) in paragraph at lines 27520--27525 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1689] Underfull \hbox (badness 3514) in paragraph at lines 27607--27612 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1690] Underfull \hbox (badness 3514) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1691] [1692] Underfull \hbox (badness 3514) in paragraph at lines 27766--27771 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1693] Underfull \hbox (badness 6691) in paragraph at lines 27858--27863 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 4024) in paragraph at lines 28349--28352 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 5431) in paragraph at lines 28955--28957 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1711] [1712] [1713] [1714] Underfull \hbox (badness 5431) in paragraph at lines 29165--29168 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1715] [1716] [1717] [1718] [1719] Underfull \hbox (badness 1337) in paragraph at lines 29480--29484 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1720] [1721] [1722] [1723] Underfull \hbox (badness 1616) in paragraph at lines 29792--29795 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] Underfull \hbox (badness 3557) in paragraph at lines 30927--30931 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1742] [1743] Underfull \vbox (badness 10000) has occurred while \output is active [1744] [1745] [1746] Underfull \hbox (badness 1337) in paragraph at lines 31291--31295 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] Underfull \hbox (badness 1337) in paragraph at lines 31820--31824 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31834--31836 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1755] [1756] [1757] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1758] [1759] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1760] [1761] [1762] [1763] [1764]) (./stats4-pkg.tex Chapter 11. [1765] [1766] [1767] Underfull \vbox (badness 10000) has occurred while \output is active [1768] [1769] [1770] [1771] [1772]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1773] [1774] [1775]) (./tcltk-pkg.tex [1776] Chapter 12. [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \vbox (badness 10000) has occurred while \output is active [1784] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796]) (./tools-pkg.tex Chapter 13. [1797] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1798] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1799] [1800] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1801] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1802] [1803] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1804] [1805] [1806] [1807] [1808] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1815] [1816] [1817] [1818] [1819] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1820] [1821] Underfull \hbox (badness 7981) in paragraph at lines 1707--1715 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1822] Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1823] [1824] [1825]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1826] [1827] [1828] [1829] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1830] [1831] [1832] Underfull \hbox (badness 7981) in paragraph at lines 2391--2399 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1833] [1834] [1835] [1836] [1837] [1838] [1839] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [1840] [1841] [1842] [1843] Underfull \hbox (badness 1424) in paragraph at lines 3177--3179 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1855] [1856] Underfull \hbox (badness 10000) in paragraph at lines 4017--4020 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1857] Underfull \hbox (badness 1137) in paragraph at lines 4119--4121 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1858] [1859] [1860] [1861] [1862] Underfull \hbox (badness 1796) in paragraph at lines 4427--4432 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1863] Underfull \hbox (badness 1838) in paragraph at lines 4501--4507 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4501--4507 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1864] [1865] [1866] [1867] Underfull \hbox (badness 2197) in paragraph at lines 4776--4786 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1868] Underfull \hbox (badness 1571) in paragraph at lines 4842--4846 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1869] [1870] [1871]) (./utils-pkg.tex [1872] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1873] [1874] [1875] [1876] [1877] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 10000) in paragraph at lines 720--726 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 720--726 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1883] [1884] Underfull \hbox (badness 5847) in paragraph at lines 857--863 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 857--863 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1885] Underfull \hbox (badness 3861) in paragraph at lines 925--930 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1886] [1887] [1888] Underfull \hbox (badness 3323) in paragraph at lines 1108--1116 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1889] [1890] [1891] [1892] [1893] [1894] [1895] Underfull \hbox (badness 1371) in paragraph at lines 1625--1627 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1695. [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] Underfull \hbox (badness 2057) in paragraph at lines 2346--2348 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1906] [1907] [1908] [1909] [1910]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2697 ... the Clipboard in MS Windows}{clipboard} [1911] [1912] [1913] Underfull \hbox (badness 1748) in paragraph at lines 2864--2867 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1914] [1915] [1916] [1917] [1918] [1919] Underfull \hbox (badness 5388) in paragraph at lines 3274--3278 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3279--3282 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] Underfull \hbox (badness 1430) in paragraph at lines 4063--4071 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1931] Underfull \hbox (badness 1231) in paragraph at lines 4140--4152 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1932] [1933] Underfull \hbox (badness 10000) in paragraph at lines 4297--4299 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.format}) has been a lready used, duplicate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] Underfull \hbox (badness 1622) in paragraph at lines 5514--5518 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6232. [1962] Underfull \hbox (badness 1371) in paragraph at lines 6236--6238 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1963] Underfull \hbox (badness 1502) in paragraph at lines 6325--6330 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6325--6330 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1964] [1965] Underfull \hbox (badness 10000) in paragraph at lines 6498--6507 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1966] Underfull \hbox (badness 2150) in paragraph at lines 6562--6565 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1967] [1968] Underfull \hbox (badness 3118) in paragraph at lines 6701--6703 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1969] [1970] Underfull \hbox (badness 1325) in paragraph at lines 6880--6884 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6892--6898 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1971] Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1972] Underfull \hbox (badness 3219) in paragraph at lines 7043--7050 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7043--7050 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 7051--7054 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1973] [1974] Underfull \hbox (badness 1546) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7210--7215 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] Underfull \hbox (badness 10000) in paragraph at lines 7997--7999 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 8735--8737 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8757--8762 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1999] [2000] [2001] [2002] [2003] [2004] [2005] Underfull \hbox (badness 1248) in paragraph at lines 9283--9287 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2006] Underfull \hbox (badness 1789) in paragraph at lines 9363--9365 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014] [2015] Underfull \vbox (badness 5533) has occurred while \output is active [2016] [2017] [2018] Underfull \hbox (badness 1097) in paragraph at lines 10200--10203 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2019] [2020] Underfull \hbox (badness 3000) in paragraph at lines 10336--10341 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] Underfull \hbox (badness 2134) in paragraph at lines 10925--10930 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2029] Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2030] [2031] [2032] [2033] [2034] [2035] [2036] Underfull \hbox (badness 2469) in paragraph at lines 11475--11479 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11475--11479 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 4060) in paragraph at lines 11891--11894 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2043] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2044] [2045] [2046] Underfull \hbox (badness 2150) in paragraph at lines 12162--12164 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2047] [2048] [2049] [2050] Underfull \hbox (badness 10000) in paragraph at lines 12381--12385 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12412--12418 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2051] [2052] Underfull \hbox (badness 1009) in paragraph at lines 12606--12618 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2053] Underfull \hbox (badness 4779) in paragraph at lines 12646--12648 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12676--12683 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 3780) in paragraph at lines 13084--13088 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13100--13103 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2060] [2061] [2062] Underfull \hbox (badness 2302) in paragraph at lines 13305--13307 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 10000) in paragraph at lines 13603--13608 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2068] [2069] [2070] [2071] [2072] [2073] Underfull \hbox (badness 2932) in paragraph at lines 14050--14057 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14050--14057 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2074] [2075] [2076] [2077] Underfull \hbox (badness 6510) in paragraph at lines 14358--14362 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14365--14368 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14365--14368 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 15032--15037 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15032--15037 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2088] Underfull \hbox (badness 10000) in paragraph at lines 15097--15100 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] Underfull \hbox (badness 10000) in paragraph at lines 15875--15877 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2101] [2102] [2103]) [2104] [2105] [2106] (./KernSmooth-pkg.tex Chapter 15. [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116]) (./MASS-pkg.tex Chapter 16. [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2154] [2155] [2156] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2157] [2158] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2184] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2215] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2216] [2217] [2218] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2265] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2266] [2267] [2268] [2269] Underfull \hbox (badness 5119) in paragraph at lines 509--513 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2270] [2271] Underfull \hbox (badness 2035) in paragraph at lines 605--608 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-her-its from class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1 /zi4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2272] [2273] Underfull \hbox (badness 1701) in paragraph at lines 758--762 []\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org / [2274] [2275] Underfull \hbox (badness 5175) in paragraph at lines 877--882 []\T1/ptm/m/n/10 option [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di- cat-ing if the re-sult should be sparse, i.e., for- Underfull \hbox (badness 10000) in paragraph at lines 877--882 \T1/ptm/m/n/10 mally in-her-it-ing from \T1/zi4/m/it/10 "[][]sparseMatrix[][][] "\T1/ptm/m/n/10 . The de-fault, [][]\T1/zi4/m/it/10 NA[][][]\T1/ptm/m/n/10 , de - Underfull \hbox (badness 6675) in paragraph at lines 877--882 \T1/ptm/m/n/10 cides from the ``spar-sity'' of \T1/zi4/m/it/10 x \T1/ptm/m/n/10 and \T1/zi4/m/it/10 y\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m /n/10 code in [2276] [2277] Underfull \hbox (badness 10000) in paragraph at lines 1056--1058 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2278] [2279]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1168 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1168 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1223--1229 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2280] [2281] [2282] Underfull \hbox (badness 2277) in paragraph at lines 1423--1426 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2283] [2284] Underfull \hbox (badness 1097) in paragraph at lines 1595--1598 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1601--1605 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2285]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1658 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1658 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1659 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1680 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1691 \aliasA{rowSums}{colSums}{rowSums} [2286] [2287] [2288] Underfull \hbox (badness 3547) in paragraph at lines 1910--1913 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2289] [2290] [2291] [2292] [2293] Underfull \hbox (badness 1360) in paragraph at lines 2333--2337 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2294] [2295] [2296] [2297] Underfull \hbox (badness 2717) in paragraph at lines 2649--2653 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2298] [2299] Underfull \hbox (badness 6842) in paragraph at lines 2739--2742 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2300] Underfull \hbox (badness 10000) in paragraph at lines 3026--3030 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2301] [2302] [2303] Underfull \hbox (badness 1173) in paragraph at lines 3236--3238 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3283--3285 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2304] [2305] Underfull \hbox (badness 1354) in paragraph at lines 3482--3485 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2306] [2307] [2308] [2309] [2310] Underfull \hbox (badness 6188) in paragraph at lines 3892--3895 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3895--3898 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2311] [2312] Underfull \hbox (badness 2318) in paragraph at lines 4010--4014 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2313] [2314] Underfull \hbox (badness 5245) in paragraph at lines 4146--4150 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2315] [2316] [2317] [2318] [2319] [2320] Overfull \hbox (23.27168pt too wide) in paragraph at lines 4563--4563 []\T1/zi4/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe ll-Boeing/counterx/counterx.html[] Overfull \hbox (8.27782pt too wide) in paragraph at lines 4570--4570 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB /Boeing/msc00726.tar.gz"))))[] [2321] [2322] Underfull \hbox (badness 1931) in paragraph at lines 4802--4804 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2323] [2324] [2325] [2326] [2327] Underfull \hbox (badness 1005) in paragraph at lines 5108--5113 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5108--5113 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5127--5130 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2328] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5175--5175 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2329] Underfull \hbox (badness 3229) in paragraph at lines 5276--5285 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2330] Underfull \hbox (badness 10000) in paragraph at lines 5318--5320 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 4995) in paragraph at lines 5323--5326 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5333--5336 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2331] [2332] [2333] [2334] [2335] Underfull \hbox (badness 1014) in paragraph at lines 5712--5715 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2336] [2337] [2338] [2339] Underfull \hbox (badness 10000) in paragraph at lines 6027--6030 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2340] Underfull \hbox (badness 2478) in paragraph at lines 6139--6144 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2341] Underfull \hbox (badness 10000) in paragraph at lines 6147--6150 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2342] Underfull \hbox (badness 10000) in paragraph at lines 6339--6342 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2343] Underfull \hbox (badness 10000) in paragraph at lines 6437--6440 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2344] Underfull \hbox (badness 10000) in paragraph at lines 6512--6515 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2345] Underfull \hbox (badness 2050) in paragraph at lines 6588--6591 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2346] [2347] [2348] [2349] [2350] Underfull \hbox (badness 6268) in paragraph at lines 6901--6905 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2351]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.7000 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 7093--7095 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode [2352] Underfull \hbox (badness 4846) in paragraph at lines 7098--7101 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 7103--7106 [2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7176 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7284 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7383 ...tcrossprod}{matrix-products}{tcrossprod} [2354] Underfull \hbox (badness 10000) in paragraph at lines 7556--7561 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7556--7561 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7565--7567 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7567--7569 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7571--7572 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2355] [2356] Underfull \hbox (badness 1430) in paragraph at lines 7715--7720 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2357] Underfull \hbox (badness 10000) in paragraph at lines 7786--7789 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2358] Underfull \hbox (badness 10000) in paragraph at lines 7842--7844 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2359] [2360] Underfull \vbox (badness 10000) has occurred while \output is active [2361] Underfull \hbox (badness 2478) in paragraph at lines 8049--8054 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 8057--8060 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2362] [2363] Underfull \hbox (badness 5924) in paragraph at lines 8251--8253 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2364]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8291 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8291 \HeaderA{norm}{Matrix Norms}{norm} [2365] [2366] Underfull \hbox (badness 10000) in paragraph at lines 8564--8567 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2367] Underfull \hbox (badness 10000) in paragraph at lines 8654--8657 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2368] Underfull \hbox (badness 10000) in paragraph at lines 8730--8733 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2369] Underfull \vbox (badness 10000) has occurred while \output is active [2370] Underfull \hbox (badness 10000) in paragraph at lines 8856--8858 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8861--8864 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2371] [2372] [2373] [2374]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.9093 \aliasA{qr}{qr-methods}{qr} [2375] [2376] [2377] [2378]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9419 ... the Reciprocal Condition Number}{rcond} [2379] [2380] [2381] [2382] [2383] Underfull \hbox (badness 2351) in paragraph at lines 9723--9731 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9723--9731 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9723--9731 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2384] [2385] [2386] [2387]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9998 \aliasA{solve}{solve-methods}{solve} [2388] Underfull \hbox (badness 10000) in paragraph at lines 10161--10168 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2389] Underfull \hbox (badness 4403) in paragraph at lines 10222--10225 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10292--10295 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2390] Underfull \hbox (badness 10000) in paragraph at lines 10328--10331 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10339--10343 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2391] [2392] [2393] [2394] [2395] [2396] [2397] [2398] Underfull \hbox (badness 10000) in paragraph at lines 10916--10924 []\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn s an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 10916--10924 \T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x) \T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 10941--10949 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10941--10949 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2399]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.11007 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2400] [2401] Underfull \hbox (badness 5036) in paragraph at lines 11193--11195 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2402] [2403] Underfull \hbox (badness 10000) in paragraph at lines 11400--11403 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2404] Underfull \vbox (badness 10000) has occurred while \output is active [2405] [2406] [2407] Underfull \hbox (badness 10000) in paragraph at lines 11669--11674 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2408] Underfull \hbox (badness 2057) in paragraph at lines 11749--11751 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2409] [2410] Underfull \hbox (badness 10000) in paragraph at lines 11918--11923 []\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[] [][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 11924--11930 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2411] Underfull \hbox (badness 1902) in paragraph at lines 11959--11963 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2412] [2413] [2414] [2415] [2416] [2417] [2418] Underfull \hbox (badness 6910) in paragraph at lines 12558--12560 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2419] Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12605. Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12605. [2420] [2421]) (./boot-pkg.tex [2422] Chapter 18. [2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2433] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2434] Underfull \vbox (badness 10000) has occurred while \output is active [2435] [2436] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2437] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2438] [2439] [2440] [2441] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2442] [2443] [2444] [2445] [2446] [2447] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2448] [2449] Underfull \vbox (badness 10000) has occurred while \output is active [2450] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2451] [2452] [2453] [2454] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2455] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2456] [2457] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2492] [2493] [2494] [2495] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2496] [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] [2506] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525]) (./class-pkg.tex [2526] Chapter 19. [2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536] [2537] [2538] [2539] [2540] [2541] [2542]) (./cluster-pkg.tex Chapter 20. [2543] [2544] [2545] [2546] [2547] Underfull \vbox (badness 7777) has occurred while \output is active [2548] [2549] [2550] [2551] [2552] Underfull \hbox (badness 4144) in paragraph at lines 691--694 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2553] [2554] Underfull \hbox (badness 1412) in paragraph at lines 783--788 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2555] Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2556] [2557] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2558] [2559] [2560] Underfull \hbox (badness 6110) in paragraph at lines 1207--1211 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2561] [2562] [2563] Underfull \hbox (badness 10000) in paragraph at lines 1476--1479 [2564] [2565] Underfull \hbox (badness 2503) in paragraph at lines 1588--1591 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] Underfull \hbox (badness 10000) in paragraph at lines 2182--2185 Underfull \hbox (badness 10000) in paragraph at lines 2196--2202 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2574] [2575] [2576] [2577] Underfull \hbox (badness 6675) in paragraph at lines 2431--2433 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2578] [2579] [2580] [2581] [2582] [2583] [2584] Underfull \hbox (badness 2980) in paragraph at lines 2961--2965 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2585] [2586] [2587] [2588] [2589] [2590] Underfull \hbox (badness 1142) in paragraph at lines 3302--3305 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2591] [2592] Underfull \hbox (badness 1142) in paragraph at lines 3421--3424 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2593] [2594] [2595] Underfull \hbox (badness 2582) in paragraph at lines 3644--3649 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2596] Underfull \hbox (badness 3209) in paragraph at lines 3706--3711 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3706--3711 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2597] [2598] [2599] [2600] [2601] Underfull \hbox (badness 10000) in paragraph at lines 3998--4000 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2602] [2603] [2604] [2605] Underfull \hbox (badness 2626) in paragraph at lines 4227--4232 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2606] Underfull \hbox (badness 1383) in paragraph at lines 4305--4310 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2607] [2608] [2609] [2610] [2611] [2612] [2613] Underfull \hbox (badness 10000) in paragraph at lines 4748--4750 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2614] [2615]) (./codetools-pkg.tex [2616] Chapter 21. [2617] [2618] [2619] [2620] [2621]) (./foreign-pkg.tex [2622] Chapter 22. [2623] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2624] [2625] [2626] [2627] [2628] [2629] [2630] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 7133) in paragraph at lines 550--558 []\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][] [2631] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2632] [2633] [2634] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2635] [2636] [2637] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2638] [2639] [2640] [2641] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2642] [2643]) (./lattice-pkg.tex [2644] Chapter 23. [2645] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2661] Underfull \vbox (badness 4416) has occurred while \output is active [2662] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2663] [2664] [2665] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2666] [2667] [2668] [2669] [2670] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680] Underfull \hbox (badness 2781) in paragraph at lines 2849--2851 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2681] [2682] Underfull \hbox (badness 2486) in paragraph at lines 3001--3005 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2683] [2684] [2685] [2686] [2687] [2688]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.parallel}) has been already used, duplicate ign ored \relax l.3475 \aliasA{parallel}{B\_08\_splom}{parallel} [2689] [2690] [2691] [2692] [2693] [2694] [2695] [2696] Underfull \hbox (badness 5696) in paragraph at lines 3970--3974 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3970--3974 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3970--3974 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2697] Underfull \hbox (badness 1173) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in [2698] Underfull \hbox (badness 3219) in paragraph at lines 4136--4138 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2699] [2700] Underfull \hbox (badness 3492) in paragraph at lines 4336--4346 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , [2701] Underfull \hbox (badness 10000) in paragraph at lines 4361--4364 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4364--4366 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] Underfull \hbox (badness 6157) in paragraph at lines 5087--5090 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2711] [2712] [2713] [2714] [2715] [2716] [2717] Underfull \hbox (badness 10000) in paragraph at lines 5545--5548 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5545--5548 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 4805) in paragraph at lines 5907--5911 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5918--5925 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5918--5925 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5918--5925 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5918--5925 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5918--5925 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2723] [2724] [2725] [2726] Underfull \hbox (badness 4242) in paragraph at lines 6218--6223 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6218--6223 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2727] [2728] Underfull \hbox (badness 2310) in paragraph at lines 6334--6339 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739] Underfull \hbox (badness 3168) in paragraph at lines 7116--7120 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2740] [2741] [2742] [2743] Underfull \hbox (badness 2012) in paragraph at lines 7387--7390 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2744] [2745] Underfull \hbox (badness 3333) in paragraph at lines 7559--7561 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2746] [2747] [2748] Underfull \vbox (badness 10000) has occurred while \output is active [2749] [2750] [2751] Underfull \hbox (badness 1436) in paragraph at lines 7973--7979 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759] Underfull \hbox (badness 10000) in paragraph at lines 8531--8534 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2760] Underfull \hbox (badness 1092) in paragraph at lines 8577--8579 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2761] [2762] Underfull \hbox (badness 3895) in paragraph at lines 8738--8741 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2763] Underfull \hbox (badness 1515) in paragraph at lines 8814--8818 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2764] [2765] Underfull \hbox (badness 6316) in paragraph at lines 8920--8925 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8937--8940 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2766] [2767] [2768] [2769] Overfull \hbox (5.28876pt too wide) in paragraph at lines 9228--9232 []\T1/ptm/m/n/10 Returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2770] [2771] [2772] [2773] [2774] [2775] [2776] Underfull \hbox (badness 2310) in paragraph at lines 9692--9696 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9697--9700 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2777] [2778] [2779]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9923 \aliasA{melanoma}{H\_melanoma}{melanoma} [2780] [2781] [2782] Underfull \hbox (badness 4144) in paragraph at lines 10147--10150 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10147--10150 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2783] [2784]) (./mgcv-pkg.tex Chapter 24. [2785] [2786] [2787] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2788] [2789] [2790] [2791] Underfull \hbox (badness 10000) in paragraph at lines 378--385 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 378--385 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2792] [2793] [2794] [2795] [2796] Underfull \hbox (badness 1406) in paragraph at lines 703--704 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2797] [2798] [2799] Underfull \hbox (badness 1158) in paragraph at lines 813--815 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion Underfull \hbox (badness 1259) in paragraph at lines 876--877 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2800] [2801] [2802] [2803] [2804] Underfull \hbox (badness 1281) in paragraph at lines 1160--1161 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2805] [2806] Underfull \vbox (badness 10000) has occurred while \output is active [2807] Underfull \vbox (badness 10000) has occurred while \output is active [2808] [2809] Underfull \vbox (badness 10000) has occurred while \output is active [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] Underfull \hbox (badness 1142) in paragraph at lines 2361--2365 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2387--2392 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2826] [2827] [2828] [2829] [2830] [2831] Underfull \vbox (badness 10000) has occurred while \output is active [2832] Underfull \vbox (badness 10000) has occurred while \output is active [2833] [2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 10000) in paragraph at lines 3822--3826 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2850] [2851] Underfull \vbox (badness 10000) has occurred while \output is active [2852] [2853] [2854] Underfull \hbox (badness 1184) in paragraph at lines 4108--4112 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] [2863] [2864] [2865] [2866] Underfull \hbox (badness 1142) in paragraph at lines 4829--4833 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2867] Underfull \hbox (badness 1231) in paragraph at lines 4933--4935 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2868] [2869] [2870] Underfull \vbox (badness 10000) has occurred while \output is active [2871] [2872] [2873] [2874] Underfull \hbox (badness 2181) in paragraph at lines 5377--5378 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2875] [2876] [2877] [2878] [2879] [2880] [2881] Underfull \hbox (badness 10000) in paragraph at lines 5766--5767 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] Underfull \hbox (badness 1142) in paragraph at lines 6351--6355 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2893] [2894] [2895] Underfull \vbox (badness 10000) has occurred while \output is active [2896] [2897] [2898] [2899] Underfull \hbox (badness 1087) in paragraph at lines 6723--6724 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2900] [2901] Underfull \vbox (badness 10000) has occurred while \output is active [2902] Underfull \vbox (badness 10000) has occurred while \output is active [2903] [2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914] [2915] Underfull \hbox (badness 1242) in paragraph at lines 7672--7673 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \hbox (badness 6001) in paragraph at lines 8312--8314 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935] [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] Underfull \hbox (badness 1038) in paragraph at lines 9061--9064 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9061--9064 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2939] Underfull \hbox (badness 10000) in paragraph at lines 9117--9120 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] Underfull \hbox (badness 1852) in paragraph at lines 9790--9793 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2951] [2952] [2953] Underfull \hbox (badness 1852) in paragraph at lines 9959--9962 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] Underfull \hbox (badness 1205) in paragraph at lines 10191--10193 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10191--10193 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10197--10202 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2958] Underfull \hbox (badness 1205) in paragraph at lines 10281--10283 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10281--10283 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2959] [2960] [2961] Underfull \hbox (badness 1253) in paragraph at lines 10480--10482 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2962] [2963] [2964] [2965] [2966] [2967] Underfull \hbox (badness 4792) in paragraph at lines 10741--10744 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10741--10744 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2968] Underfull \hbox (badness 10000) in paragraph at lines 10848--10851 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] [2978] [2979] [2980] [2981] Underfull \vbox (badness 10000) has occurred while \output is active [2982] Underfull \hbox (badness 3861) in paragraph at lines 11637--11640 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2983] [2984] Underfull \hbox (badness 1320) in paragraph at lines 11752--11757 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2985] Underfull \hbox (badness 1975) in paragraph at lines 11858--11863 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2986] [2987] Underfull \hbox (badness 1762) in paragraph at lines 11947--11959 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2988] [2989] [2990] Underfull \hbox (badness 7667) in paragraph at lines 12159--12165 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2991] Underfull \hbox (badness 10000) in paragraph at lines 12200--12201 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2992] [2993] [2994] [2995] Underfull \vbox (badness 10000) has occurred while \output is active [2996] Underfull \hbox (badness 10000) in paragraph at lines 12477--12479 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2997] [2998] Underfull \hbox (badness 10000) in paragraph at lines 12607--12608 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2999] [3000] [3001] Underfull \hbox (badness 1436) in paragraph at lines 12745--12752 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [3002] [3003] Underfull \hbox (badness 10000) in paragraph at lines 12840--12841 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011] [3012] [3013] Underfull \hbox (badness 10000) in paragraph at lines 13441--13447 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13441--13447 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [3014] [3015] [3016] Underfull \vbox (badness 10000) has occurred while \output is active [3017] Underfull \vbox (badness 10000) has occurred while \output is active [3018] [3019] Underfull \hbox (badness 10000) in paragraph at lines 13784--13785 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3020] [3021] [3022] [3023] Underfull \hbox (badness 3895) in paragraph at lines 14044--14047 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3024] Underfull \hbox (badness 10000) in paragraph at lines 14089--14091 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3025] [3026] [3027] [3028] [3029] Underfull \hbox (badness 1371) in paragraph at lines 14363--14369 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14403--14407 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14403--14407 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14403--14407 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3030] [3031] [3032] [3033] Underfull \hbox (badness 2326) in paragraph at lines 14608--14615 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3034] Underfull \hbox (badness 2158) in paragraph at lines 14693--14693 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] Underfull \hbox (badness 1796) in paragraph at lines 16345--16348 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071]) (./nlme-pkg.tex [3072] Chapter 25. [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] Underfull \hbox (badness 2875) in paragraph at lines 1996--2002 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1996--2002 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3103] [3104] [3105] [3106] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed ...shipout:D \box_use:N \l_shipout_box l.3194 ] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] Underfull \hbox (badness 1067) in paragraph at lines 4419--4424 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150] [3151] Underfull \hbox (badness 10000) in paragraph at lines 5165--5169 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3152] [3153] [3154] [3155] [3156] [3157] [3158] Underfull \hbox (badness 10000) in paragraph at lines 5597--5600 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3159] [3160] [3161] [3162] [3163] [3164] [3165] Underfull \hbox (badness 10000) in paragraph at lines 5978--5983 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3166] [3167] [3168] [3169] Underfull \hbox (badness 1490) in paragraph at lines 6248--6259 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3170] Underfull \hbox (badness 10000) in paragraph at lines 6312--6314 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3171] [3172] [3173] [3174] [3175] [3176] Underfull \hbox (badness 10000) in paragraph at lines 6726--6728 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3177] [3178] [3179] [3180] Underfull \hbox (badness 10000) in paragraph at lines 6999--7006 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3181] [3182] [3183] [3184] Underfull \hbox (badness 10000) in paragraph at lines 7259--7264 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] Underfull \hbox (badness 10000) in paragraph at lines 8527--8529 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3204]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8578 \aliasA{sigma}{lmeObject}{sigma} [3205] [3206] [3207] [3208] Underfull \hbox (badness 10000) in paragraph at lines 8808--8815 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] Underfull \hbox (badness 10000) in paragraph at lines 9330--9337 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3217] [3218] [3219] [3220] [3221]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] Underfull \hbox (badness 1596) in paragraph at lines 10465--10491 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3234] [3235] Underfull \hbox (badness 1490) in paragraph at lines 10603--10609 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3236] [3237] [3238] [3239] Underfull \hbox (badness 10000) in paragraph at lines 10844--10846 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] Underfull \hbox (badness 1286) in paragraph at lines 13742--13749 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289] Underfull \hbox (badness 1215) in paragraph at lines 14288--14290 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] [3301] [3302]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] Underfull \hbox (badness 3884) in paragraph at lines 15825--15829 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15825--15829 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15825--15829 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3313] [3314] Underfull \hbox (badness 1067) in paragraph at lines 15937--15942 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3315] [3316] [3317] [3318] Underfull \hbox (badness 1448) in paragraph at lines 16180--16189 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 1728) in paragraph at lines 16885--16888 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3329] [3330] [3331] [3332] [3333] Underfull \hbox (badness 8056) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3334] [3335] [3336] [3337] [3338] Underfull \hbox (badness 10000) in paragraph at lines 17542--17550 [][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , [] []\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 , [3339] [3340] [3341] [3342] [3343] [3344] [3345] [3346] [3347] [3348] Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3349] [3350] [3351] [3352] [3353] Underfull \hbox (badness 5036) in paragraph at lines 18576--18585 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3367] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3368] [3369] [3370] [3371] [3372] [3373] [3374]) (./rpart-pkg.tex Chapter 27. [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403]) (./spatial-pkg.tex [3404] Chapter 28. [3405] [3406] [3407] [3408] [3409] [3410] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423]) (./survival-pkg.tex [3424] Chapter 29. [3425] [3426] [3427] [3428] Underfull \hbox (badness 6412) in paragraph at lines 282--284 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3429] [3430]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} [3431] [3432] [3433] [3434] Overfull \vbox (3.85637pt too high) has occurred while \output is active [3435] [3436] [3437] [3438] [3439] [3440] [3441] Underfull \hbox (badness 1097) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3442] [3443] [3444]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1308 ...erapy for Stage B/C colon cancer}{colon} [3445] Underfull \hbox (badness 10000) in paragraph at lines 1356--1360 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453] Underfull \hbox (badness 10000) in paragraph at lines 1940--1955 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1940--1955 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1940--1955 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1940--1955 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] [3468] [3469] Overfull \vbox (31.18587pt too high) has occurred while \output is active [3470] [3471] [3472] Underfull \hbox (badness 1389) in paragraph at lines 3300--3302 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3473] [3474] [3475] [3476] Overfull \hbox (467.89665pt too wide) in alignment at lines 3586--3586 [] [] Underfull \vbox (badness 10000) has occurred while \output is active [3477] Overfull \vbox (8.56093pt too high) has occurred while \output is active [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488] [3489] [3490] [3491] Overfull \vbox (11.01616pt too high) has occurred while \output is active [3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502] Underfull \hbox (badness 5274) in paragraph at lines 5316--5318 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515] [3516] [3517] [3518] [3519] Underfull \hbox (badness 1281) in paragraph at lines 6540--6543 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.7092 ...ata from a soldering experiment}{solder} [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541] [3542] [3543] [3544] [3545] [3546] Underfull \hbox (badness 10000) in paragraph at lines 8422--8431 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3547] [3548] Underfull \hbox (badness 1038) in paragraph at lines 8578--8584 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3549] [3550] [3551] [3552] [3553] Underfull \hbox (badness 10000) in paragraph at lines 8941--8946 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564] [3565] Underfull \hbox (badness 1354) in paragraph at lines 9860--9864 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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[]\T1/zi4/m/it/10 %&%,nCsparseMatrix,nsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5155--5157 []\T1/zi4/m/it/10 %&%,nsparseMatrix,nCsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5159--5161 []\T1/zi4/m/it/10 %&%,nsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5163--5165 []\T1/zi4/m/it/10 %&%,sparseMatrix,diagonalMatrix-method [3637] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5346--5348 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3638] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5511--5513 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5513--5515 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5517--5519 []\T1/zi4/m/it/10 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at lines 5910--5912 []\T1/zi4/m/it/10 Arith,triangularMatrix,diagonalMatrix-method [3642] [3643] [3644] Overfull \hbox (15.01662pt too wide) in paragraph at lines 6567--6569 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3645] [3646] [3647] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7233--7235 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7235--7237 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7265--7267 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7267--7269 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7273--7275 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3648] [3649] [3650] [3651] Overfull \hbox (10.8567pt too wide) in paragraph at lines 8029--8031 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8031--8033 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8041--8043 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8045--8047 []\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8049--8051 []\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8051--8053 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8053--8055 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8055--8057 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8059--8061 []\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8061--8063 []\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8063--8065 []\T1/zi4/m/it/10 coerce,CsparseMatrix,symmetricMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8065--8067 []\T1/zi4/m/it/10 coerce,CsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8085--8087 []\T1/zi4/m/it/10 coerce,ddiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8087--8089 []\T1/zi4/m/it/10 coerce,ddiMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8091--8093 []\T1/zi4/m/it/10 coerce,denseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8093--8095 []\T1/zi4/m/it/10 coerce,denseMatrix,generalMatrix-method 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coerce,diagonalMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8165--8167 []\T1/zi4/m/it/10 coerce,diagonalMatrix,generalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8171--8173 []\T1/zi4/m/it/10 coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8173--8175 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method [3653] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8221--8223 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3654] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8373--8375 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8375--8377 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8407--8409 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method [3655] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8421--8423 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8423--8425 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8449--8451 []\T1/zi4/m/it/10 coerce,lsparseMatrix,dsparseMatrix-method [3656] [3657] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8635--8637 []\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8643--8645 []\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8645--8647 []\T1/zi4/m/it/10 coerce,matrix.csc,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8651--8653 []\T1/zi4/m/it/10 coerce,matrix.csc,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8653--8655 []\T1/zi4/m/it/10 coerce,matrix.csr,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8661--8663 []\T1/zi4/m/it/10 coerce,matrix.csr,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8663--8665 []\T1/zi4/m/it/10 coerce,matrix.csr,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8665--8667 []\T1/zi4/m/it/10 coerce,ndenseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8667--8669 []\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8671--8673 []\T1/zi4/m/it/10 coerce,ndenseMatrix,nsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8673--8675 []\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8675--8677 []\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8715--8717 []\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method [3658] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8739--8741 []\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8741--8743 []\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8773--8775 []\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8775--8777 []\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8777--8779 []\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8779--8781 []\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8781--8783 []\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method [3659] Overfull \hbox (15.8567pt too wide) in paragraph at lines 8899--8901 []\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8901--8903 []\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8907--8909 []\T1/zi4/m/it/10 coerce,RsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8909--8911 []\T1/zi4/m/it/10 coerce,RsparseMatrix,generalMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8913--8915 []\T1/zi4/m/it/10 coerce,RsparseMatrix,lsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8919--8921 []\T1/zi4/m/it/10 coerce,RsparseMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8921--8923 []\T1/zi4/m/it/10 coerce,RsparseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8927--8929 []\T1/zi4/m/it/10 coerce,sparseMatrix,generalMatrix-method [3660] Overfull \hbox (10.8567pt too wide) in paragraph at lines 8937--8939 []\T1/zi4/m/it/10 coerce,sparseMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8939--8941 []\T1/zi4/m/it/10 coerce,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8941--8943 []\T1/zi4/m/it/10 coerce,sparseMatrix,symmetricMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8943--8945 []\T1/zi4/m/it/10 coerce,sparseMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8945--8947 []\T1/zi4/m/it/10 coerce,sparseVector,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8955--8957 []\T1/zi4/m/it/10 coerce,sparseVector,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8957--8959 []\T1/zi4/m/it/10 coerce,sparseVector,TsparseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 8963--8965 []\T1/zi4/m/it/10 coerce,triangularMatrix,symmetricMatrix-method Overfull \hbox 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coerce,xsparseVector,nsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8989--8991 []\T1/zi4/m/it/10 coerce,xsparseVector,zsparseVector-method [3661] Overfull \hbox (20.8567pt too wide) in paragraph at lines 9127--9129 []\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9145--9147 []\T1/zi4/m/it/10 Compare,lsparseMatrix,lsparseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9161--9163 []\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method [3662] [3663] [3664] Overfull \hbox (30.8567pt too wide) in paragraph at lines 9689--9691 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9691--9693 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,ddenseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9693--9695 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method Overfull 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too wide) in paragraph at lines 9985--9987 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3667] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10326--10328 []\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 10328--10330 []\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 10336--10338 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 10350--10352 []\T1/zi4/m/it/10 determinant,dsparseMatrix,logical-method [3668] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10370--10372 []\T1/zi4/m/it/10 determinant,sparseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 10372--10374 []\T1/zi4/m/it/10 determinant,sparseMatrix,missing-method [3669] [3670] [3671] Overfull \hbox (15.01662pt too wide) in paragraph at lines 11102--11104 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3672] [3673] Overfull \hbox (15.01662pt too wide) in paragraph at lines 11620--11622 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3674] [3675] Overfull \hbox (15.8567pt too wide) in paragraph at lines 11964--11966 []\T1/zi4/m/it/10 forceSymmetric,corMatrix,character-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 11966--11968 []\T1/zi4/m/it/10 forceSymmetric,corMatrix,missing-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 11968--11970 []\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,ANY-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 11970--11972 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,character-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 11972--11974 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,missing-method Overfull \hbox (15.8567pt too 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forceSymmetric,nsTMatrix,character-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 12040--12042 []\T1/zi4/m/it/10 forceSymmetric,nsTMatrix,missing-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 12042--12044 []\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,character-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 12044--12046 []\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 12046--12048 []\T1/zi4/m/it/10 forceSymmetric,sparseMatrix,ANY-method [3677] [3678] [3679] Overfull \hbox (15.01662pt too wide) in paragraph at lines 12981--12983 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3680] [3681] [3682] [3683] [3684] [3685] [3686] [3687] Overfull \hbox (0.8567pt too wide) in paragraph at lines 14517--14519 []\T1/zi4/m/it/10 kronecker,diagonalMatrix,Matrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 14519--14521 []\T1/zi4/m/it/10 kronecker,dsparseMatrix,dsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 14529--14531 []\T1/zi4/m/it/10 kronecker,Matrix,diagonalMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 14533--14535 []\T1/zi4/m/it/10 kronecker,sparseMatrix,TsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 14535--14537 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,sparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 14537--14539 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method [3688] [3689] [3690] Overfull \hbox (10.8567pt too wide) in paragraph at lines 15350--15352 []\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method [3691] Overfull \hbox (5.8567pt too wide) in paragraph at lines 15358--15360 []\T1/zi4/m/it/10 Logic,ldenseMatrix,lsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 15382--15384 []\T1/zi4/m/it/10 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Ops,diagonalMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 17364--17366 []\T1/zi4/m/it/10 Ops,diagonalMatrix,triangularMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17384--17386 []\T1/zi4/m/it/10 Ops,dsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17422--17424 []\T1/zi4/m/it/10 Ops,lsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17424--17426 []\T1/zi4/m/it/10 Ops,lsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17456--17458 []\T1/zi4/m/it/10 Ops,nsparseMatrix,dsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 17458--17460 []\T1/zi4/m/it/10 Ops,nsparseMatrix,lsparseMatrix-method [3701] Overfull \hbox (0.8567pt too wide) in paragraph at lines 17482--17484 []\T1/zi4/m/it/10 Ops,sparseMatrix,diagonalMatrix-method [3702] Overfull \hbox (15.01662pt too wide) in paragraph at lines 17703--17705 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (33.3567pt too wide) in paragraph at lines 17729--17731 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [3703] [3704] [3705] [3706] [3707] Overfull \hbox (15.01662pt too wide) in paragraph at lines 19035--19037 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19042--19044 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19044--19046 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19046--19048 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox 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Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te xmf-var/fonts/map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 639--642 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 639--642 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 639--642 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 666--671 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1534--1537 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1534--1537 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3137--3151 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3288--3296 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 356681 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te xmf-var/fonts/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 639--642 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 639--642 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 639--642 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 666--671 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1534--1537 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1534--1537 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3137--3151 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3288--3296 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 373135 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te xmf-var/fonts/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 639--642 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 639--642 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 639--642 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 666--671 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1534--1537 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1534--1537 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3137--3151 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3288--3296 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 373131 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1505--1509 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2112--2112 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [24] [25] Overfull \hbox (56.55324pt too wide) in paragraph at lines 2325--2325 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34] [35] Appendix A [36] [37] [38] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3296--3296 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] Appendix B [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5059--5059 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 5061--5061 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5143--5143 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [60] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5193--5194 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [61] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5259--5259 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [62] [63] [64] [65] [66] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5680--5680 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have Overfull \hbox (22.06111pt too wide) in paragraph at lines 5715--5715 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [67] [68] [69] Overfull \hbox (119.7888pt too wide) in paragraph at lines 6040--6040 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [70] [71] (Function and variable index) [72] No file R-admin.vrs. (Concept index) [73] No file R-admin.cps. (Environment variable index) [74] No file R-admin.ens. [75] ) (see the transcript file for additional information) Output written on R-admin.pdf (78 pages, 478631 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1505--1509 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2112--2112 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [24] [25] Overfull \hbox (56.55324pt too wide) in paragraph at lines 2325--2325 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34] [35] Appendix A [36] [37] [38] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3296--3296 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [39] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5059--5059 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 5061--5061 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5143--5143 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [60] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5193--5194 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [61] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5259--5259 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [62] [63] [64] [65] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5680--5680 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have [66] Overfull \hbox (22.06111pt too wide) in paragraph at lines 5715--5715 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [67] [68] [69] Overfull \hbox (119.7888pt too wide) in paragraph at lines 6040--6040 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [70] [71] (Function and variable index) [72] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.vrs) (Concept index) [73] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.cps) (Environment variable index) [74] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.ens) [75] ) (see the transcript file for additional information) Output written on R-admin.pdf (80 pages, 523139 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1505--1509 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2112--2112 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [24] [25] Overfull \hbox (56.55324pt too wide) in paragraph at lines 2325--2325 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34] [35] Appendix A [36] [37] [38] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3296--3296 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [39] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5059--5059 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 5061--5061 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5143--5143 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [60] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5193--5194 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [61] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5259--5259 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [62] [63] [64] [65] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5680--5680 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have [66] Overfull \hbox (22.06111pt too wide) in paragraph at lines 5715--5715 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [67] [68] [69] Overfull \hbox (119.7888pt too wide) in paragraph at lines 6040--6040 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [70] [71] (Function and variable index) [72] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.vrs) (Concept index) [73] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.cps) (Environment variable index) [74] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.ens) [75] ) (see the transcript file for additional information) Output written on R-admin.pdf (80 pages, 523122 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] No file R-data.vrs. (Concept index) [29] No file R-data.cps. [30] ) (see the transcript file for additional information) Output written on R-data.pdf (33 pages, 265836 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 305716 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 305723 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [18] Underfull \hbox (badness 10000) in paragraph at lines 1614--1624 @texttt sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tkt able2. 10. tar. gz[][][]@textrm , but [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2755--2758 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [32] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [51] [52] [53] [54] [55] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [56] Underfull \hbox (badness 7558) in paragraph at lines 5009--5013 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 5461--5464 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [62] [63] [64] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [65] Underfull \hbox (badness 10000) in paragraph at lines 5773--5774 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [66] [67] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 6230--6240 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 7457--7463 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96] Chapter 4 [97] [98] [99] [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 9017--9029 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [105] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [106] Underfull \hbox (badness 10000) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [107] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [108] [109] [110] [111] [112] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [113] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [124] [125] [126] [127] [128] [129] [130] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [153] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [163] [164] [165] [166] [167] [168] [169] [170] Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 15299--15305 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [183] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16271--16278 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [190] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [191] (Function and variable index) [192] No file R-exts.vrs. (Concept index) [193] No file R-exts.cps. [194] ) (see the transcript file for additional information) Output written on R-exts.pdf (197 pages, 932850 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [18] Underfull \hbox (badness 10000) in paragraph at lines 1614--1624 @texttt sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tkt able2. 10. tar. gz[][][]@textrm , but [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2755--2758 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [32] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [51] [52] [53] [54] [55] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [56] Underfull \hbox (badness 7558) in paragraph at lines 5009--5013 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 5461--5464 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [62] [63] [64] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [65] Underfull \hbox (badness 10000) in paragraph at lines 5773--5774 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [66] [67] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 6230--6240 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 7457--7463 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96] Chapter 4 [97] [98] [99] [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 9017--9029 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [105] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [106] Underfull \hbox (badness 10000) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [107] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [108] [109] [110] [111] [112] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [113] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [124] [125] [126] [127] [128] [129] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [153] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [163] [164] [165] [166] [167] [168] [169] [170] Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 15299--15305 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [183] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16271--16278 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [190] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [191] (Function and variable index) [192] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.vrs [193] [194] [195]) (Concept index) [196] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.cps [197]) [198] ) (see the transcript file for additional information) Output written on R-exts.pdf (204 pages, 997663 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [18] Underfull \hbox (badness 10000) in paragraph at lines 1614--1624 @texttt sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tkt able2. 10. tar. gz[][][]@textrm , but [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2755--2758 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [32] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [51] [52] [53] [54] [55] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [56] Underfull \hbox (badness 7558) in paragraph at lines 5009--5013 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 5461--5464 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [62] [63] [64] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [65] Underfull \hbox (badness 10000) in paragraph at lines 5773--5774 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [66] [67] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 6230--6240 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 7457--7463 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96] Chapter 4 [97] [98] [99] [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 9017--9029 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [105] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [106] Underfull \hbox (badness 10000) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [107] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [108] [109] [110] [111] [112] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [113] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [124] [125] [126] [127] [128] [129] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [153] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [163] [164] [165] [166] [167] [168] [169] [170] Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 15299--15305 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [183] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16271--16278 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [190] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [191] (Function and variable index) [192] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.vrs [193] [194] [195]) (Concept index) [196] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.cps [197]) [198] ) (see the transcript file for additional information) Output written on R-exts.pdf (204 pages, 997669 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] No file R-intro.vrs. Appendix E [94] No file R-intro.cps. Appendix F [95] [96] ) (see the transcript file for additional information) Output written on R-intro.pdf (99 pages, 571401 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 628083 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 628086 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] Underfull \hbox (badness 10000) in paragraph at lines 3841--3845 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [46] Underfull \hbox (badness 10000) in paragraph at lines 3875--3880 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] No file R-ints.vrs. (Concept index) [63] No file R-ints.cps. [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (67 pages, 404147 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] Underfull \hbox (badness 10000) in paragraph at lines 3841--3845 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [46] Underfull \hbox (badness 10000) in paragraph at lines 3875--3880 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.vrs [63]) (Concept index) [64] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.cps) [65] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 455189 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] Underfull \hbox (badness 10000) in paragraph at lines 3841--3845 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [46] Underfull \hbox (badness 10000) in paragraph at lines 3875--3880 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.vrs [63]) (Concept index) [64] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.cps) [65] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 455184 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4353--4355 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 326954 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4353--4355 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 375645 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4353--4355 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 375634 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc' + cp doc/manual/R-exts.texi doc/manual/R-exts.texi.spot + cp doc/manual/R-intro.texi doc/manual/R-intro.texi.spot + sed -i 's|@eqn|@math|g' doc/manual/R-exts.texi + sed -i 's|@eqn|@math|g' doc/manual/R-intro.texi + make MAKEINFO=texi2any info make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc' + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ + mv doc/FAQ.utf8 doc/FAQ + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.aVcMwT + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.1.2 + make DESTDIR=/builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 install install-info mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc' installing doc ... mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/R mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/man/man1 make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/html' installing doc/html ... mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/R/html make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' installing doc/manual ... mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/R/manual mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/R/manual/images make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/etc' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/etc installing etc ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/share' installing share ... mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/R mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/dictionaries mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/encodings mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/java mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/licenses mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/make mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/Rd mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/Rd/macros mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/sh mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/texmf mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/texmf/bibtex/bib mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/texmf/bibtex/bst mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/texmf/tex/latex make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/scripts' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/bin mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/include/R make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/include/R/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/blas' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/tre' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/tre' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/tzone' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/tzone' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/intl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/intl' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix' gcc -m64 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/pkgconfig make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/exec make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/lib make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/modules make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/info /usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual' + mv doc/manual/R-exts.texi.spot doc/manual/R-exts.texi + mv doc/manual/R-intro.texi.spot doc/manual/R-intro.texi + make DESTDIR=/builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 install-pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [18] Underfull \hbox (badness 10000) in paragraph at lines 1614--1624 @texttt sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tkt able2. 10. tar. gz[][][]@textrm , but [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2755--2758 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [32] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [51] [52] [53] [54] [55] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [56] Underfull \hbox (badness 7558) in paragraph at lines 5009--5013 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 5461--5464 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [62] [63] [64] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [65] Underfull \hbox (badness 10000) in paragraph at lines 5773--5774 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [66] [67] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 6230--6240 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 7457--7463 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96] Chapter 4 [97] [98] [99] [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 9017--9029 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [105] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [106] Underfull \hbox (badness 10000) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [107] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [108] [109] [110] [111] [112] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [113] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [124] [125] [126] [127] [128] [129] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [153] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [163] [164] [165] [166] [167] [168] [169] [170] Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 15299--15305 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [183] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16271--16278 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [190] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [191] (Function and variable index) [192] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.vrs [193] [194] [195]) (Concept index) [196] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.cps [197]) [198] ) (see the transcript file for additional information) Output written on R-exts.pdf (204 pages, 997669 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 628086 bytes). 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/KernSmooth/html/locpoly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Aids2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Animals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Boston.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Cars93.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Cushings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/DDT.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/GAGurine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Insurance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/MASS-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Null.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/OME.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Pima.tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Rabbit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Rubber.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/SP500.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Sitka.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Sitka89.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Skye.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/Traffic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/UScereal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/UScrime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/VA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/abbey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/accdeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/addterm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/anorexia.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/anova.negbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/area.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/bacteria.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/bandwidth.nrd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/bcv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/beav1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/beav2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/biopsy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/birthwt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/boxcox.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/cabbages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/caith.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/cats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/cement.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/chem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/con2tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/confint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/contr.sdif.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/coop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/corresp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/cov.rob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/cov.trob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/cpus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/crabs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/deaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/denumerate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/dose.p.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/drivers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/dropterm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/eagles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/epil.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/eqscplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/farms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/fgl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/fitdistr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/forbes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/fractions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/galaxies.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/gamma.dispersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/gamma.shape.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/gehan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/genotype.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/geyser.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/gilgais.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/ginv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/glm.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/glm.nb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/glmmPQL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/hills.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/hist.scott.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/housing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/huber.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/hubers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/immer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/isoMDS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/kde2d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/ldahist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/leuk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/lm.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/lm.ridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/loglm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/loglm1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/logtrans.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/lqs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/mammals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/mcycle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/menarche.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/michelson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/minn38.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/motors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/muscle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/mvrnorm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/negative.binomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/newcomb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/nlschools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/npk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/npr1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/oats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/painters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/pairs.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/parcoord.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/petrol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/phones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/plot.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/plot.mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/plot.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/polr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/predict.glmmPQL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/predict.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/predict.lqs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/predict.mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/predict.qda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/profile.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/qda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/quine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/rational.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/renumerate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/rlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/rms.curv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/rnegbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/road.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/rotifer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/sammon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/ships.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/shoes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/shrimp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/shuttle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/snails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/stdres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/steam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/stepAIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/stormer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/html/studres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/MatrixFactorization-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/RsparseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/Schur-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/Schur.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/condest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/dMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/ddenseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/ddiMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/uniqTsparse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/unpack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/unused-classes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/html/updown.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/CallExternal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Colon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Comparison.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Constants.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Cstack_info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/DateTimeClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Dates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Encoding.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/EnvVar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Extract.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Extract.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Extract.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Extremes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Foreign-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Foreign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Hyperbolic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ISOdatetime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/InternalMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/La_library.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/La_version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Last.value.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Log.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Logic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/LongVectors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/MathFun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Memory-limits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Memory.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/NA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/NULL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/NumericConstants.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Ops.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Paren.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Platform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Primitive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Quotes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Random-user.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Random.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/RdUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Recall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Reserved.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Rhome.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Round.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/S3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Signals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Special.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Startup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Syntax.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.getenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.getpid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.glob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.localeconv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.readlink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.setFileTime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.setenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.sleep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Sys.which.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Trig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/UTF8filepaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/UseMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Vectorize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/Version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/abbreviate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/agrep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/all.equal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/all.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/allnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/any.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/aperm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/append.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/apply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/args.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/as.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/as.POSIXlt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/as.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/as.environment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/as.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/asplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/assign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/assignOps.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/attach.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/attr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/attributes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/autoload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/backsolve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/base-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/base-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/base-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/base-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/basename.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/bincode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/bindenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/bitwise.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/body.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/bquote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/browser.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/browserText.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/builtins.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/by.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/c.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/callCC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/capabilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/cat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/cbind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/char.expand.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/character.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/charmatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/chartr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/chkDots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/chol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/chol2inv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/col.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/colSums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/colnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/commandArgs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/comment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/complex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/conditions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/conflicts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/connections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/contributors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/copyright.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/crossprod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/cumsum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/curlGetHeaders.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/cut.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/cut.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/data.class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/data.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dataframeHelpers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dcf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/debug.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/delayedAssign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/deparse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/deparseOpts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/det.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/detach.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/diff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/difftime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dimnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/do.call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dontCheck.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/double.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dput.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/drop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/droplevels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dump.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/duplicated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/dynload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/eapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/eigen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/encodeString.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/environment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/eval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/exists.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/expand.grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/expression.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/extSoftVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/file.access.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/file.choose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/file.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/file.path.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/file.show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/files2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/find.package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/findInterval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/force.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/forceAndCall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/formals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/format.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/format.pval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/formatDL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/formatc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/funprog.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/gc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/gc.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/gctorture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/getCallingDLL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/getDLLRegisteredRoutines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/getLoadedDLLs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/getNativeSymbolInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/gettext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/getwd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/gl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/grep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/grepRaw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/groupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/grouping.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/gzcon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/hexmode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/iconv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/icuSetCollate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/identical.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/identity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ifelse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/integer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/interaction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/interactive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/invisible.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.finite.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.language.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.recursive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.single.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/is.unsorted.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/isR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/isS4.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/isSymmetric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/jitter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/kappa.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/kronecker.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/l10n_info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/labels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/lapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/lazyload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/length.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/lengths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/levels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/libPaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/libcurlVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/library.dynam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/library.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/license.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/list.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/list2DF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/list2env.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/load.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/locales.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/logical.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/lower.tri.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/make.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/make.unique.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/mapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/marginSums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/mat.or.vec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/match.arg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/match.call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/match.fun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/match.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/matmult.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/maxCol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/mean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/memCompress.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/memlimits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/memory.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/merge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/message.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/missing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/mode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/name.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/nargs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/nchar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/nlevels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/noquote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/norm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/normalizePath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/notyet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/nrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ns-dblcolon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ns-hooks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ns-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ns-load.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ns-reflect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/ns-topenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/numeric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/numeric_version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/octmode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/on.exit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/order.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/outer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/parse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/paste.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/path.expand.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/pcre_config.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/pipeOp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/pmatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/polyroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/pos.to.env.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/pretty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/print.dataframe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/print.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/print.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/prmatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/proc.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/prod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/proportions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/pushBack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/qr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/qraux.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/quit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/range.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/raw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rawConnection.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rawConversion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/readBin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/readChar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/readLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/readRDS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/readRenviron.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/readline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/reg.finalizer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/regex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/regmatches.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/replace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/round.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/row.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/row.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/rowsum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sQuote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sample.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/save.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/scale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/scan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/search.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/seek.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/seq.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/seq.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/seq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sequence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/serialize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/setTimeLimit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/shQuote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/showConnections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/slice.index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/slotOp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/socketSelect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/solve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sort.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/source.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/split.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sprintf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/srcfile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/standardGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/startsWith.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/stop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/stopifnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/strptime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/strrep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/strsplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/strtoi.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/strtrim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/structure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/strwrap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/subset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/substitute.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/substr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/summary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/svd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sweep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/switch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sys.parent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/sys.source.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/system.file.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/system.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/system.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/system2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/t.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/tabulate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/tapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/taskCallback.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/taskCallbackManager.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/taskCallbackNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/tempfile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/textconnections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/tilde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/timezones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/toString.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/trace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/traceback.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/tracemem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/transform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/trimws.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/try.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/typeof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/unique.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/unlink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/unlist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/unname.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/userhooks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/utf8Conversion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/validUTF8.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/vector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/warning.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/warnings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/weekday.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/which.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/which.min.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/with.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/withVisible.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/write.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/writeLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/xtfrm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/zMachine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/zScript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/zapsmall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/zpackages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/base/html/zutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/EEF.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/Imp.Estimates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/abc.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/acme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/aids.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/aircondit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/amis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/aml.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/beaver.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/bigcity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/boot-practicals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/boot.array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/boot.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/brambles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/breslow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/calcium.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cane.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/capability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/catsM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cav.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cd4.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cd4.nested.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/censboot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/channing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/claridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cloth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/co.transfer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/coal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/corr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cum3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/cv.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/darwin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/dogs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/downs.bc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/ducks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/empinf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/envelope.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/exp.tilt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/fir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/freq.array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/frets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/glm.diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/glm.diag.plots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/gravity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/hirose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/imp.weights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/inv.logit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/islay.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/jack.after.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/k3.linear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/linear.approx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/lines.saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/logit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/manaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/motor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/neuro.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/nitrofen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/nodal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/norm.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/nuclear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/paulsen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/plot.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/poisons.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/polar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/print.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/print.bootci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/print.saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/print.simplex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/remission.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/saddle.distn.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/saddle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/salinity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/simplex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/simplex.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/smooth.f.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/sunspot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/survival.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/tau.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/tilt.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/tsboot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/tuna.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/urine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/var.linear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/boot/html/wool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/SOM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/batchSOM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/condense.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/knn.cv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/knn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/knn1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/lvq1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/lvq2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/lvq3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/lvqinit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/lvqtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/multiedit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/olvq1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/reduce.nn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/html/somgrid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/agnes.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/agriculture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/animals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/bannerplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/chorSub.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/clara.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/clusGap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/clusplot.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/clusplot.partition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/cluster-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/coef.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/daisy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/dissimilarity.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/ellipsoidhull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/fanny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/fanny.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/flower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/mona.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/pam.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/partition.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/plantTraits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/plot.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/plot.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/plot.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/plot.partition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/pltree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/pluton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/predict.ellipsoid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.dissimilarity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.fanny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/print.pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/ruspini.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/silhouette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/sizeDiss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/summary.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/summary.clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/summary.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/summary.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/summary.pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/twins.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/volume.ellipsoid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/votes.repub.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/html/xclara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/codetools/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/codetools/html/checkUsage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/codetools/html/codetools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/codetools/html/findGlobals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/codetools/html/showTree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/compiler/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/compiler/html/compile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/AirPassengers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/BJsales.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/BOD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/ChickWeight.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/DNase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/EuStockMarkets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Formaldehyde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/HairEyeColor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Harman23.cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Harman74.cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Indometh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/InsectSprays.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/JohnsonJohnson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/LakeHuron.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/LifeCycleSavings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Loblolly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Nile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Orange.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/OrchardSprays.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/PlantGrowth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Puromycin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Theoph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/Titanic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/ToothGrowth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/UCBAdmissions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/UKDriverDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/UKLungDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/UKgas.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/USAccDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/USArrests.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/USJudgeRatings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/VADeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/WWWusage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/WorldPhones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/ability.cov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/airmiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/airquality.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/anscombe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/attenu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/attitude.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/austres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/beavers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/cars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/chickwts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/co2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/crimtab.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/datasets-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/discoveries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/esoph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/euro.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/eurodist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/faithful.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/freeny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/infert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/iris.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/islands.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/lh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/longley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/lynx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/morley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/mtcars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/nhtemp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/nottem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/npk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/occupationalStatus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/precip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/presidents.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/pressure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/quakes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/randu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/rivers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/rock.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/sleep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/stackloss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/state.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/sunspot.month.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/sunspot.year.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/sunspots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/swiss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/treering.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/trees.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/uspop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/volcano.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/warpbreaks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/women.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/datasets/html/zCO2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/lookup.xport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.S.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.arff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.dbf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.dta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.epiinfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.mtp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.octave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.spss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.ssd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.systat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/read.xport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/write.arff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/write.dbf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/write.dta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/html/write.foreign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/Devices.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/Hershey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/Japanese.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/Type1Font.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/adjustcolor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/as.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/axisTicks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/boxplot.stats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/bringToTop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/cairo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/cairoSymbolFont.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/check.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/chull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/cm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/col2rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/colorRamp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/contourLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/convertColor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/densCols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev.capabilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev.capture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev.flush.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev.interactive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/dev2bitmap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/devAskNewPage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/embedFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/extendrange.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/grDevices-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/grSoftVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/gray.colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/gray.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/hcl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/hsv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/make.rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/msgWindow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/n2mfrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/nclass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/palette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/palettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/pdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/pdf.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/pictex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/plotmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/png.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/postscript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/postscriptFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/pretty.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/ps.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/quartz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/quartzFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/recordGraphics.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/recordplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/rgb2hsv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/savePlot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/trans3d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/windows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/windows.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/windowsFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/x11.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/x11Fonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/xfig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/xy.coords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/xyTable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/html/xyz.coords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/abline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/arrows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/assocplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/axTicks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/axis.POSIXct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/axis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/barplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/box.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/boxplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/boxplot.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/coplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/curve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/dotchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/filled.contour.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/fourfoldplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/graphics-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/graphics-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/hist.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/hist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/identify.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/image.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/legend.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/lines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/locator.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/matplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/mosaicplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/mtext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/pairs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/panel.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/par.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plot.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plot.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plot.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plot.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plot.window.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plot.xy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/plothistogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/points.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/polygon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/segments.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/smoothScatter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/spineplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/stars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/stem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/stripchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/strwidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/sunflowerplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/symbols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/text.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/title.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/units.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/xspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/html/zAxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/Grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/absolute.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/arrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/calcStringMetric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/current.viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/dataViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/depth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/deviceLoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/drawDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/editDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/editViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/explode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/gEdit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/gPath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/getNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/gpar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.DLapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.add.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.bezier.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.cap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.circle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.clip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.copy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.curve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.delay.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.display.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.draw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.force.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.grab.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.grep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.grill.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.grob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.lines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.locator.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.move.to.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.newpage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.null.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.pack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.path.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.place.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.plot.and.legend.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.points.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.polygon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.pretty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.record.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.rect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.refresh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.remove.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.reorder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.roundrect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.segments.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.set.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.show.layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.show.viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.text.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.xaxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.xspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grid.yaxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grobCoords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grobName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grobWidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/grobX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/legendGrob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/makeContent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/patterns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/plotViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/resolveRasterSize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/showGrob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/showViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/stringWidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/unit.c.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/unit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/unit.length.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/unit.pmin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/unit.rep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/unitType.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/valid.just.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/validDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/viewports.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/vpPath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/widthDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/xDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/html/xsplinePoints.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/Lattice.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/Rows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/USMortality.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/axis.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/banking.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/barchart.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/barley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/cloud.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/draw.colorkey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/draw.key.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/environmental.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/ethanol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/histogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/interaction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/lattice.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/latticeParseFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/level.colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/levelplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/llines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/lset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/make.groups.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/oneway.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/packet.panel.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.axis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.barchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.bwplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.cloud.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.densityplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.dotplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.functions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.histogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.levelplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.number.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.pairs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.parallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.qqmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.qqmathline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.smoothScatter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.stripplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.superpose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.violin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/panel.xyplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/prepanel.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/prepanel.functions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/print.trellis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/qq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/qqmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/rfs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/shingles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/simpleKey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/simpleTheme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/singer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/splom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/strip.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/tmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/trellis.device.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/trellis.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/trellis.par.get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/update.trellis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/utilities.3d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/xyplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/html/xyplot.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/BasicClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Classes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Classes_Details.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Documentation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/EnvironmentClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/GenericFunctions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Introduction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/LanguageClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/LinearMethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/MethodDefinition-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/MethodSupport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/MethodWithNext-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/MethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/MethodsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Methods_Details.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/Methods_for_S3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/NextMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/RClassUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/RMethodUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/S3Part.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/S4groupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/SClassExtension-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/StructureClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/TraceClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/as.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/callGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/canCoerce.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/cbind2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/className.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/classRepresentation-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/classesToAM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/dotsMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/evalSource.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/findClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/findMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/fixPrevious.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/genericFunction-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/getClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/getMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/getPackageName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/hasArg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/implicitGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/inheritedSlotNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/initialize-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/is.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/isSealedMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/languageEl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/localRefClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/method.skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/methodUtilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/methods-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/methods-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/methods-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/new.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/nonStructure-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/promptClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/promptMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/refClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/removeMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/representation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/selectSuperClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setAs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setClassUnion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setGroupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setIs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setLoadActions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setOldClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/setSClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/showMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/signature-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/slot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/stdRefClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/substituteDirect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/testInheritedMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/validObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/html/zBasicFunsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Beta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/FFdes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Predict.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Rrank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Sl.repara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Sl.setup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/Tweedie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/XWXd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/anova.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/bam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/bam.update.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/bandchol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/blas.thread.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/bug.reports.mgcv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/cSplineDes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/chol.down.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/choose.k.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/columb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/concurvity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/coxpht.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/dDeta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/exclude.too.far.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/extract.lme.cov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/family.mgcv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/fix.family.link.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/fixDependence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/formXtViX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/formula.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/fs.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/full.score.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.check.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.convergence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.fit3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.fit5.post.proc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.mh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.models.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.outer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.reparam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.scale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.selection.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.side.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam.vcomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gam2objective.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gamObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gamSim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gamlss.etamu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gamlss.gH.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gamm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gammals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gaulss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/get.var.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gevlss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/ginla.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/gumbls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/identifiability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/in.out.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/inSide.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/influence.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/initial.sp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/interpret.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/jagam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/k.check.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/ldTweedie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/ldetS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/linear.functional.terms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/mgcv-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/mgcv-parallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/mini.roots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/missing.data.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/model.matrix.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/mono.con.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/mroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/mvn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/pen.edf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/place.knots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/plot.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/html/polys.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Covariate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Covariate.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Dialyzer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Dim.corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Dim.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Dim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Dim.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Earthquake.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Extract.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Fatigue.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Gasoline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Glucose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Glucose2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Gun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/IGF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Initialize.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Initialize.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Initialize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Initialize.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Initialize.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Initialize.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/LDEsysMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Machines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/MathAchSchool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/MathAchieve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Matrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Meat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Milk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Muscle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Names.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Names.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Names.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Names.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Nitrendipene.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Oats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Orthodont.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Ovary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Oxboys.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Oxide.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/PBG.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Phenobarb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Pixel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Quinidine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Rail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/RatPupWeight.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Relaxin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Remifentanil.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Soybean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Spruce.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.corLin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.corRatio.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.corSpher.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Variogram.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Wafer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Wheat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/Wheat2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/allCoef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/anova.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/anova.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/asOneFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/asTable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/augPred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/balancedGrouped.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/bdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/coef.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/collapse.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/collapse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corCompSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corFactor.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corFactor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corGaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corLin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corNatural.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corRatio.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corSpher.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/corSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/ergoStool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fdHess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fitted.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fitted.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fitted.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fixed.effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/fixef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/formula.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/formula.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/formula.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getCovariate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getCovariateFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getData.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getData.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getData.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroups.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getGroupsFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getResponse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getResponseFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/getVarCov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gls-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/glsControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/glsObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gnlsControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gnlsObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/gsummary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/intervals.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/intervals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/intervals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/intervals.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/isBalanced.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/isInitialized.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lmList.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lme.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lme.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lmeControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lmeObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logDet.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logDet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logDet.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logDet.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/logLik.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/needUpdate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlme.nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlmeControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlmeObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/nlsList.selfStart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pairs.compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pairs.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pairs.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdCompSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdConstruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdDiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdFactor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdIdent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdLogChol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdNatural.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pdSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/phenoModel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.ACF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.Variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.augPred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/plot.ranef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/pooledSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/predict.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/predict.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/predict.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/predict.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/predict.nlme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/print.summary.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/print.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/qqnorm.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/qqnorm.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/quinModel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/random.effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/ranef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/ranef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/recalc.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/recalc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/recalc.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/recalc.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/recalc.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/simulate.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/solve.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/solve.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/splitFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/summary.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/update.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/update.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varComb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varConstPower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varConstProp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varFixed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varIdent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varPower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varWeights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/class.ind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/nnet.Hess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/nnet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/predict.nnet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/html/which.is.max.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/RngStream.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/children.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/clusterApply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/detectCores.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/makeCluster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/mcaffinity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/mcfork.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/mclapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/mcparallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/parallel-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/pvec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/html/splitIndices.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/car.test.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/car90.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/cu.summary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/kyphosis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/labels.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/meanvar.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/na.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/path.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/plot.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/plotcp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/post.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/predict.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/print.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/printcp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/prune.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/rpart.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/rsq.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/snip.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/solder.balance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/stagec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/summary.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/text.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/html/xpred.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/Strauss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/anova.trls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/correlogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/expcov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/ppgetregion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/ppinit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/pplik.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/ppregion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/predict.trls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/prmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/semat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/surf.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/surf.ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/html/trls.influence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/bs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/interpSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/ns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/periodicSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/polySpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/predict.bSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/predict.bs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/splineDesign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/splineKnots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/splineOrder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/splines-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/html/xyVector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/AIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ARMAacf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ARMAtoMA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Beta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Binomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Cauchy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Chisquare.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Distributions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Exponential.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Fdist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/GammaDist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Geometric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Hypergeometric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/IQR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/KalmanLike.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Logistic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Lognormal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/NLSstAsymptotic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/NLSstClosestX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/NLSstLfAsymptote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/NLSstRtAsymptote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/NegBinomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Normal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Pair.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Poisson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSasymp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSasympOff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSasympOrig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSbiexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSfol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSfpl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSgompertz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSlogis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSmicmen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SSweibull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/SignRank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/StructTS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/TDist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Tukey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/TukeyHSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Uniform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Weibull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/Wilcoxon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/acf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/acf2AR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/add1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/addmargins.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/aggregate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/alias.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/anova.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/anova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/anova.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/anova.mlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ansari.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/aov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/approxfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ar.ols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/arima.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/arima.sim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/arima0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/as.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/asOneSidedFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/bandwidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/bartlett.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/binom.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/biplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/biplot.princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/birthday.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/box.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cancor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/case.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/checkMFClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/chisq.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cmdscale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/coef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/complete.cases.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/confint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/constrOptim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/contrast.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/contrasts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/convolve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cophenetic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cor.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cov.wt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cpgram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/cutree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/decompose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/delete.response.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/dendrapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/density.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/deriv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/deviance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/df.residual.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/diffinv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/dist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/dummy.coef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ecdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/eff.aovlist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/embed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/expand.model.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/extractAIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/factanal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/factor.scope.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/family.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/fft.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/filter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/fisher.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/fitted.values.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/fivenum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/fligner.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/formula.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/friedman.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ftable.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ftable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/getInitial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/glm.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/glm.summaries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/heatmap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/identify.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/influence.measures.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/integrate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/interaction.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/is.empty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/isoreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/kernapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/kernel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/kmeans.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/kruskal.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ks.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ksmooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lag.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/line.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/listof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lm.influence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lm.summaries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lmfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/loadings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/loess.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/logLik.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/loglin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lowess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ls.diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ls.print.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/lsfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/mad.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/mahalanobis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/make.link.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/makepredictcall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/manova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/mantelhaen.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/mauchly.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/mcnemar.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/median.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/medpolish.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/model.extract.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/model.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/model.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/model.tables.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/monthplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/mood.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/na.action.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/na.contiguous.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/na.fail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nafns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/naprint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nextn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nlminb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nls.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/nobs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/numericDeriv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/offset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/oneway.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/optim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/optimize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/order.dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/p.adjust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/pairwise.prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/pairwise.t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/pairwise.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.acf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.density.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.isoreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.ppr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.profile.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.spec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.stepfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/plot.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/poisson.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/poly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/power.anova.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/power.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/power.prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/power.t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/pp.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ppoints.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ppr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/prcomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/predict.loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/predict.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/predict.smooth.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/preplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/print.power.htest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/print.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/printCoefmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/profile.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/proj.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/prop.trend.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/qqnorm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/quade.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/quantile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/r2dtable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/rWishart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/read.ftable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/rect.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/relevel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/reorder.dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/reorder.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/screeplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/sd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/se.contrast.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/selfStart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/setNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/shapiro.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/sigma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/simulate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/spec.taper.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/spectrum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/splinefun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/start.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stat.anova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stats-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stats-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stats-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/step.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stepfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/stlmethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/summary.aov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/summary.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/summary.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/summary.manova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/summary.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/summary.princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/supsmu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/symnum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/termplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/terms.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ts.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/ts.union.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/tsSmooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/tsdiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/tsp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/uniroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/update.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/update.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/weights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/wilcox.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/window.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/xtabs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/html/zC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/coef-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/confint-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/logLik-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/show-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/stats4-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/summary-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/summary.mle-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/update-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats4/html/vcov-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/Surv2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/agreg.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/aml.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/anova.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/attrassign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/basehaz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/bladder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/blogit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/cch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/cgd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/cgd0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/cipoisson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/clogit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/cluster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/colon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/concordance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/concordancefit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/cox.zph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/coxph.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/coxph.detail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/coxph.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/coxph.wtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/coxsurv.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/diabetic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/dsurvreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/finegray.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/flchain.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/frailty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/gbsg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/heart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/is.ratetable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/kidney.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/levels.Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/lines.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/logLik.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/logan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/lung.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/mgus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/mgus2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/model.frame.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/model.matrix.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/myeloid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/myeloma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/nafld.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/neardate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/nsk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/nwtco.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/ovarian.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/pbc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/pbcseq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/plot.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/plot.cox.zph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/plot.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/predict.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/predict.survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/print.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/print.summary.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/print.summary.survexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/print.summary.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/print.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/pseudo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/pspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/pyears.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/quantile.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/ratetable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/ratetableDate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/rats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/rats2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/reliability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/residuals.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/residuals.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/residuals.survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/retinopathy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/rhDNase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/stanford2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/statefig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/strata.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/summary.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/summary.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/summary.pyears.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/summary.survexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/summary.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survSplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survexp.us.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfit.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfit.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfit.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfit.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfit0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survfitcoxph.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survival-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survreg.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/survregDtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/tcut.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/tmerge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/vcov.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/veteran.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/xtfrm.Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/yates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/html/yates_setup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/TclInterface.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/TkCommands.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/TkWidgetcmds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/tkStartGUI.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/tk_choose.dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/tk_choose.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/tk_messageBox.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/tk_select.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/html/tkpager.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/CRANtools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/HTMLheader.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/RdTextFilter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/Rdiff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/Rdindex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/Rdutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/SweaveTeXFilter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/add_datalist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/assertCondition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/bibstyle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/buildVignette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/buildVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/charsets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkFF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkMD5sums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkPoFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkRd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkRdaFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkTnF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/checkVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/check_packages_in_dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/codoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/compactPDF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/delimMatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/dependsOnPkgs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/encoded.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/fileutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/find_gs_cmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/getVignetteInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/loadRdMacros.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/makeLazyLoading.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/make_translations_pkg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/makevars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/md5sum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/package_dependencies.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/parseLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/parse_Rd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/print.via.format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/pskill.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/psnice.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/read.00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/showNonASCII.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/startDynamicHelp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/testInstalledPackage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/texi2dvi.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/toHTML.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/toRd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/toTitleCase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/tools-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/tools-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/tools-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/undoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/updatePACKAGES.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/update_pkg_po.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/userdir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/vignetteEngine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/vignetteInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/writePACKAGES.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/html/xgettext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/BATCH.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/COMPILE.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/DLL.version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/INSTALL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/LINK.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/PkgUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Question.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/REMOVE.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/RHOME.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/RShowDoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/RSiteSearch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Rconsole.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Rprof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Rprofmem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Rscript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Rtangle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/RweaveLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/SHLIB.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/Sweave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/SweaveSyntConv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/SweaveUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/URLencode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/View.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/adist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/alarm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/apropos.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/aregexec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/arrangeWindows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/askYesNo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/aspell-utils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/aspell.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/available.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/bibentry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/browseEnv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/browseURL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/browseVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/bug.report.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/capture.output.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/changedFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/charClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/choose.dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/choose.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/chooseBioCmirror.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/chooseCRANmirror.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/citEntry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/citation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/cite.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/clipboard.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/close.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/combn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/compareVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/contrib.url.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/count.fields.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/create.post.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/data.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/dataentry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/debugcall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/debugger.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/demo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/download.file.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/download.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/edit.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/example.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/file.edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/filetest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/findLineNum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/fix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/flush.console.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/getAnywhere.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/getFromNamespace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/getParseData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/getS3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/getWindowsHandle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/getWindowsHandles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/glob2rx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/globalVariables.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/hasName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/head.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/help.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/help.request.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/help.search.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/help.start.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/hsearch-utils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/install.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/installed.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/isS3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/isS3stdGen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/localeToCharset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/menu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/mirrorAdmin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/modifyList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/news.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/nsl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/object.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/package.skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/packageDescription.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/prompt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/promptData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/promptPackage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/rcompgen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/read.DIF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/read.fortran.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/read.fwf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/read.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/read.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/roman.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/rtags.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/savehistory.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/select.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/sessionInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/setRepositories.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/setWindowTitle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/shortPathName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/sourceutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/toLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/txtProgressBar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/type.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/untar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/unzip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/update.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/url.show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/utils-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/utils-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/winProgressBar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/winextras.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/write.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/html/zip.html + chmod +x /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/R/sh/echo.sh + chmod +x /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/BATCH /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/COMPILE /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/INSTALL /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/LINK /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/R /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/REMOVE /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rcmd /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rd2pdf /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rdconv /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rdiff /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rprof /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rscript /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/SHLIB /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Stangle /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Sweave /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/build /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/check /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/config /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/exec /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/javareconf /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/libtool /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/mkinstalldirs /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/pager /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/rtags + chmod -x /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/R/CAPABILITIES + '[' '!' -d /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/include ']' ~/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R ~/build/BUILD/R-4.1.2 + pushd /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R + ln -s ../../include/R include + popd ~/build/BUILD/R-4.1.2 + '[' '!' -d /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/texmf/tex/latex/R ']' + mkdir -p /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/texmf/tex/latex + pushd /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/texmf/tex/latex ~/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/texmf/tex/latex ~/build/BUILD/R-4.1.2 + ln -s /usr/share/R/texmf/tex/latex R + popd ~/build/BUILD/R-4.1.2 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.1.2-4.fc36 --unique-debug-suffix -4.1.2-4.fc36.x86_64 --unique-debug-src-base R-4.1.2-4.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-4.1.2 extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/bin/Rscript extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rscript extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/exec/R extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/lib/libR.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/MASS/libs/MASS.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/Matrix/libs/Matrix.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/class/libs/class.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/cluster/libs/cluster.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/foreign/libs/foreign.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/libs/cairo.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grDevices/libs/grDevices.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/graphics/libs/graphics.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/grid/libs/grid.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/lattice/libs/lattice.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/methods/libs/methods.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/mgcv/libs/mgcv.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nlme/libs/nlme.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/nnet/libs/nnet.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/parallel/libs/parallel.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/rpart/libs/rpart.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/spatial/libs/spatial.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/splines/libs/splines.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/stats/libs/stats.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/survival/libs/survival.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tcltk/libs/tcltk.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/tools/libs/tools.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/library/utils/libs/utils.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/modules/R_X11.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/modules/R_de.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/modules/internet.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/modules/lapack.so extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/libRmath.so original debug info size: 22064kB, size after compression: 20656kB /usr/bin/sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match. 19842 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/mlutils.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/d1mach.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/i1mach.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/fmax2.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/fmin2.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/fprec.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/fround.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/ftrunc.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/sign.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/fsign.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/imax2.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/imin2.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/chebyshev.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/log1p.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/lgammacor.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/gammalims.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/stirlerr.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/bd0.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/gamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/lgamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/gamma_cody.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/beta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/lbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/polygamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/cospi.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/bessel_i.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/bessel_j.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/bessel_k.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/bessel_y.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/choose.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/snorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/sexp.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dgamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pgamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qgamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rgamma.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dunif.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/punif.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qunif.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/runif.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dlnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/plnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qlnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rlnorm.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/df.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pf.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qf.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rf.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dnf.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dnt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rnchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rmultinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dcauchy.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pcauchy.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qcauchy.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rcauchy.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dexp.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pexp.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qexp.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rexp.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dgeom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pgeom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qgeom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rgeom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dhyper.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/phyper.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qhyper.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rhyper.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dnbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pnbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnbinom_mu.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rnbinom.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dpois.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/ppois.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qpois.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rpois.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dweibull.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pweibull.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qweibull.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rweibull.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dlogis.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/plogis.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qlogis.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/rlogis.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dnchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pnchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnchisq.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/dnbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pnbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnbeta.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pnf.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/pnt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnf.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qnt.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/ptukey.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/qtukey.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/toms708.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/wilcox.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/signrank.o: cannot set time: Invalid argument /usr/bin/strip: /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/stgxfBGT/std_unif.o: cannot set time: Invalid argument + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/bin/true + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.s522UU + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh R 4.1.2-4.fc36 x86_64 + cd R-4.1.2 + ulimit -s 16384 + TZ=Europe/Paris + make check make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests/Examples' Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests/Examples' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running strict specific tests make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' running sloppy specific tests make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK running code in 'eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' checking Sys.timezone ... make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running code in 'timezone.R' ... OK make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running regression tests ... make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running code in 'array-subset.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'd-p-q-r-tst-2.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ...882,885c882 < [1] FALSE < Warning message: < In Sys.setlocale("LC_CTYPE", mbyte.lc) : < OS reports request to set locale to "en_US.UTF-8" cannot be honored --- > [1] TRUE OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... FAILED running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running tests of Internet functions make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,247 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("http://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections on http > > zz <- url("http://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [23] "" > > close(zz) > > > > # and via read.table, test http and ftp. > > > > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-4.1.2-4.fc36.x86_64 Processing files: R-core-4.1.2-4.fc36.x86_64 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib64/R/bin/Rscript warning: absolute symlink: /usr/share/texmf/tex/latex/R -> /usr/share/R/texmf/tex/latex Provides: R(ABI) = 4.1 R(KernSmooth) = 2.23.20 R(MASS) = 7.3.54 R(Matrix) = 1.3.4 R(base) = 4.1.2 R(boot) = 1.3.28 R(class) = 7.3.19 R(cluster) = 2.1.2 R(codetools) = 0.2.18 R(compiler) = 4.1.2 R(datasets) = 4.1.2 R(foreign) = 0.8.81 R(grDevices) = 4.1.2 R(graphics) = 4.1.2 R(grid) = 4.1.2 R(lattice) = 0.20.45 R(methods) = 4.1.2 R(mgcv) = 1.8.38 R(nlme) = 3.1.153 R(nnet) = 7.3.16 R(parallel) = 4.1.2 R(rpart) = 4.1.15 R(spatial) = 7.3.14 R(splines) = 4.1.2 R(stats) = 4.1.2 R(stats4) = 4.1.2 R(survival) = 3.2.13 R(tcltk) = 4.1.2 R(tools) = 4.1.2 R(translations) = 4.1.2 R(utils) = 4.1.2 R-KernSmooth = 2.23.20 R-MASS = 7.3.54 R-Matrix = 1.3.4 R-base = 4.1.2 R-boot = 1.3.28 R-class = 7.3.19 R-cluster = 2.1.2 R-codetools = 0.2.18 R-compiler = 4.1.2 R-core = 4.1.2-4.fc36 R-core(x86-64) = 4.1.2-4.fc36 R-datasets = 4.1.2 R-foreign = 0.8.81 R-grDevices = 4.1.2 R-graphics = 4.1.2 R-grid = 4.1.2 R-lattice = 0.20.45 R-methods = 4.1.2 R-mgcv = 1.8.38 R-nlme = 3.1.153 R-nnet = 7.3.16 R-parallel = 4.1.2 R-rpart = 4.1.15 R-spatial = 7.3.14 R-splines = 4.1.2 R-stats = 4.1.2 R-stats4 = 4.1.2 R-survival = 3.2.13 R-tcltk = 4.1.2 R-tools = 4.1.2 R-translations = 4.1.2 R-utils = 4.1.2 config(R-core) = 4.1.2-4.fc36 libR.so()(64bit) Requires(interp): /bin/sh /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires(posttrans): /bin/sh Requires: /bin/sh glibc >= 2.34.9000-38.fc36 ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.2.5)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.16)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.6)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.69()(64bit) libicuuc.so.69()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: R-Matrix < 0.999375-7 Recommends: cups Processing files: R-core-devel-4.1.2-4.fc36.x86_64 Provides: R-Matrix-devel = 1.3.4 R-core-devel = 4.1.2-4.fc36 R-core-devel(x86-64) = 4.1.2-4.fc36 pkgconfig(libR) = 4.1.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Obsoletes: R-Matrix-devel < 0.999375-7 Processing files: R-devel-4.1.2-4.fc36.x86_64 Processing files: R-java-4.1.2-4.fc36.x86_64 Processing files: R-java-devel-4.1.2-4.fc36.x86_64 Processing files: libRmath-4.1.2-4.fc36.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ty1bWA + umask 022 + cd /builddir/build/BUILD + cd R-4.1.2 + DOCDIR=/builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/libRmath + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/libRmath + cp -pr doc/COPYING /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/share/doc/libRmath + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRmath = 4.1.2-4.fc36 libRmath(x86-64) = 4.1.2-4.fc36 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH) Processing files: libRmath-devel-4.1.2-4.fc36.x86_64 Provides: libRmath-devel = 4.1.2-4.fc36 libRmath-devel(x86-64) = 4.1.2-4.fc36 pkgconfig(libRmath) = 4.1.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: libRmath-static-4.1.2-4.fc36.x86_64 Provides: libRmath-static = 4.1.2-4.fc36 libRmath-static(x86-64) = 4.1.2-4.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debugsource-4.1.2-4.fc36.x86_64 Provides: R-debugsource = 4.1.2-4.fc36 R-debugsource(x86-64) = 4.1.2-4.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debuginfo-4.1.2-4.fc36.x86_64 Provides: R-debuginfo = 4.1.2-4.fc36 R-debuginfo(x86-64) = 4.1.2-4.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(x86-64) = 4.1.2-4.fc36 Processing files: R-core-debuginfo-4.1.2-4.fc36.x86_64 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib/debug/usr/bin/Rscript-4.1.2-4.fc36.x86_64.debug and /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64/usr/lib/debug/usr/lib64/R/bin/Rscript-4.1.2-4.fc36.x86_64.debug Provides: R-core-debuginfo = 4.1.2-4.fc36 R-core-debuginfo(x86-64) = 4.1.2-4.fc36 debuginfo(build-id) = 01342c62a18d663f614d497e7cefb19dd33dc531 debuginfo(build-id) = 01fa0639a2838d7fb8578b40ca1d855251e51814 debuginfo(build-id) = 0223fa8a86bab9162df0d81f4e01ca4528185e19 debuginfo(build-id) = 071f7fa0c11c8519b2e292b5bf4886b5ae55fe70 debuginfo(build-id) = 0a23d967707c654fd1f061d5392c8ab9e9b3bbb4 debuginfo(build-id) = 20d45b383ed11d922918a8a45cb33648f58b9ee0 debuginfo(build-id) = 224c68b22dedb002fe83d81c5c6677b09b97bf51 debuginfo(build-id) = 34180396838e2ba03326d12a5daaa61326fae4b4 debuginfo(build-id) = 3b716e1c2ded9984cda0d1061efdc0a15cbf0d42 debuginfo(build-id) = 407bac5e5de57b40397c25dff38789e9bf0afd11 debuginfo(build-id) = 595888e4e2eb19c71f2e75ce13882a805308381e debuginfo(build-id) = 663467af821495d346a3ed961f171555c32ccd43 debuginfo(build-id) = 73619247e866c0dacde6f3a79c391a22143521e4 debuginfo(build-id) = 7791bc4961a3cde585ca6c102fd897f0bfc2b2f1 debuginfo(build-id) = 7a8e7bd55993310aca32129cc6aa79f7ab524780 debuginfo(build-id) = 92a7a5f74d1e248c68093f12f237ee9ad2cb108d debuginfo(build-id) = 982a81b66d47d1c39824116e207b392b741e7e05 debuginfo(build-id) = 99c5c55e770349ee7aefa67613eedcdb25b5597a debuginfo(build-id) = 9e5400ec6f36c2efcc4b48f88c5c0296dcb2cb9d debuginfo(build-id) = a27de682963e34f82d21ab717e2e71f64cfcd508 debuginfo(build-id) = a59721d2aaf490c2fadd238ba2f32327290c1f4a debuginfo(build-id) = aa28fbb85651a679e1069e1ba39c229402d6dd0e debuginfo(build-id) = bc04f4e68b53895714025458bf37c5c77d080437 debuginfo(build-id) = c6a5d55d349c84e9ceb6d2139abf2accbd615f4f debuginfo(build-id) = cfb966237093d783df9ed1e11da4fe06d66ba568 debuginfo(build-id) = d158572a884d7d20ae9841c39c5c82cd329c69e0 debuginfo(build-id) = d3f410ff366cdc42ca62f8cc9f2cb2c9430f7762 debuginfo(build-id) = db9cfd3691f66dfb416acb61621e5543c0c3e548 debuginfo(build-id) = dce823cb3b6d95d5790399e80fbf6661bb844294 debuginfo(build-id) = e313140c829c4fa274c4fd78da218180f9f6c7f2 debuginfo(build-id) = e783886d5c2f1aef3a081f05c464d69484027eba debuginfo(build-id) = nilnil libR.so-4.1.2-4.fc36.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(x86-64) = 4.1.2-4.fc36 Processing files: libRmath-debuginfo-4.1.2-4.fc36.x86_64 Provides: debuginfo(build-id) = 83a8f0bb7fbcf70b33778d98e886f356aaa5a942 libRmath-debuginfo = 4.1.2-4.fc36 libRmath-debuginfo(x86-64) = 4.1.2-4.fc36 libRmath.so-4.1.2-4.fc36.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(x86-64) = 4.1.2-4.fc36 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 Wrote: /builddir/build/RPMS/R-core-debuginfo-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-debugsource-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-static-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-core-devel-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-debuginfo-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-devel-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-devel-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-java-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-java-devel-4.1.2-4.fc36.x86_64.rpm Wrote: /builddir/build/RPMS/R-core-4.1.2-4.fc36.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.eurvZo + umask 022 + cd /builddir/build/BUILD + cd R-4.1.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-4.1.2-4.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-4.1.2-4.fc36.src.rpm Finish: build phase for R-4.1.2-4.fc36.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1644126413.320478/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-4.1.2-4.fc36.src.rpm) Config(child) 18 minutes 5 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool