Warning: Permanently added '150.240.1.113' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8069380-fedora-rawhide-s390x --chroot fedora-rawhide-s390x
Version: 0.73
PID: 20258
Logging PID: 20259
Task:
{'allow_user_ssh': False,
'appstream': False,
'background': False,
'build_id': 8069380,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-s390x',
'enable_net': False,
'fedora_review': False,
'git_hash': 'd379c960634009efa2b69592144417c0b252f611',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/R-rtracklayer',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'R-rtracklayer',
'package_version': '1.62.0-3',
'project_dirname': 'zlib-ng-rebase-fedora',
'project_name': 'zlib-ng-rebase-fedora',
'project_owner': 'ljavorsk',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ljavorsk/zlib-ng-rebase-fedora/fedora-rawhide-s390x/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'ljavorsk/zlib-ng-rebase-fedora--ljavorsk',
'source_json': {},
'source_type': None,
'ssh_public_keys': None,
'submitter': 'ljavorsk',
'tags': [],
'task_id': '8069380-fedora-rawhide-s390x',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/R-rtracklayer /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/R-rtracklayer', '/var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer'...
Running: git checkout d379c960634009efa2b69592144417c0b252f611 --
cmd: ['git', 'checkout', 'd379c960634009efa2b69592144417c0b252f611', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer
rc: 0
stdout:
stderr: Note: switching to 'd379c960634009efa2b69592144417c0b252f611'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at d379c96 automatic import of R-rtracklayer
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading rtracklayer_1.62.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o rtracklayer_1.62.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ljavorsk/zlib-ng-rebase-fedora/R-rtracklayer/rtracklayer_1.62.0.tar.gz/md5/a16a9ca02e49808b38823899860abdb6/rtracklayer_1.62.0.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 3925k 100 3925k 0 0 747k 0 0:00:05 0:00:05 --:--:-- 792k
INFO: Reading stdout from command: md5sum rtracklayer_1.62.0.tar.gz
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer/R-rtracklayer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727310661.696615 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer/R-rtracklayer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727310661.696615 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer/R-rtracklayer.spec) Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1727310661.696615/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1727310661.696615/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/96f1c7c31fff857c02acc183e2c4a92702b5cfff7ea013bb783534f461dd21ec/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/96f1c7c31fff857c02acc183e2c4a92702b5cfff7ea013bb783534f461dd21ec/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1727310661.696615/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.19.94-1.fc42.s390x
rpm-sequoia-1.7.0-2.fc41.s390x
dnf5-5.2.6.2-1.fc42.s390x
dnf5-plugins-5.2.6.2-1.fc42.s390x
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
fedora 100% | 18.7 KiB/s | 5.8 KiB | 00m00s
Copr repository 100% | 309.0 B/s | 1.5 KiB | 00m05s
Copr repository 100% | 2.1 MiB/s | 486.0 KiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing group/module packages:
bash s390x 5.2.32-2.fc42 fedora 8.3 MiB
bzip2 s390x 1.0.8-19.fc41 fedora 99.2 KiB
coreutils s390x 9.5-9.fc42 fedora 6.2 MiB
cpio s390x 2.15-2.fc41 fedora 1.1 MiB
diffutils s390x 3.10-8.fc41 fedora 1.6 MiB
fedora-release-common noarch 42-0.3 fedora 19.4 KiB
findutils s390x 1:4.10.0-4.fc41 fedora 1.9 MiB
gawk s390x 5.3.0-4.fc41 fedora 1.8 MiB
glibc-minimal-langpack s390x 2.40.9000-1.fc42 fedora 0.0 B
grep s390x 3.11-9.fc41 fedora 1.0 MiB
gzip s390x 1.13-2.fc41 fedora 400.8 KiB
info s390x 7.1.1-1.fc42 fedora 409.1 KiB
patch s390x 2.7.6-25.fc41 fedora 298.3 KiB
redhat-rpm-config noarch 295-1.fc42 fedora 186.6 KiB
rpm-build s390x 4.19.94-1.fc42 fedora 200.5 KiB
sed s390x 4.9-3.fc41 fedora 873.2 KiB
shadow-utils s390x 2:4.16.0-4.fc42 fedora 4.1 MiB
tar s390x 2:1.35-4.fc41 fedora 3.0 MiB
unzip s390x 6.0-64.fc41 fedora 410.0 KiB
util-linux s390x 2.40.2-8.fc42 fedora 3.7 MiB
which s390x 2.21-42.fc41 fedora 83.9 KiB
xz s390x 1:5.6.2-2.fc41 fedora 1.2 MiB
Installing dependencies:
add-determinism s390x 0.3.6-1.fc41 fedora 3.0 MiB
alternatives s390x 1.30-1.fc41 fedora 70.1 KiB
ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB
audit-libs s390x 4.0.2-1.fc41 fedora 350.9 KiB
authselect s390x 1.5.0-7.fc41 fedora 153.3 KiB
authselect-libs s390x 1.5.0-7.fc41 fedora 819.6 KiB
basesystem noarch 11-21.fc41 fedora 0.0 B
binutils s390x 2.43.50-1.fc42 copr_base 26.9 MiB
build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B
bzip2-libs s390x 1.0.8-19.fc41 fedora 88.5 KiB
ca-certificates noarch 2024.2.69_v8.0.401-1.fc42 fedora 2.6 MiB
coreutils-common s390x 9.5-9.fc42 fedora 11.2 MiB
cracklib s390x 2.9.11-6.fc41 fedora 250.0 KiB
crypto-policies noarch 20240828-1.git5f66e81.fc42 fedora 136.9 KiB
curl s390x 8.10.1-1.fc42 fedora 485.1 KiB
cyrus-sasl-lib s390x 2.1.28-27.fc41 fedora 2.4 MiB
debugedit s390x 5.0-17.fc41 fedora 202.8 KiB
dwz s390x 0.15-7.fc41 fedora 318.6 KiB
ed s390x 1.20.2-2.fc41 fedora 150.6 KiB
efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB
elfutils s390x 0.191-8.fc41 fedora 3.0 MiB
elfutils-debuginfod-client s390x 0.191-8.fc41 fedora 64.4 KiB
elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB
elfutils-libelf s390x 0.191-8.fc41 fedora 1.2 MiB
elfutils-libs s390x 0.191-8.fc41 fedora 746.0 KiB
fedora-gpg-keys noarch 42-0.2 fedora 126.4 KiB
fedora-release noarch 42-0.3 fedora 0.0 B
fedora-release-identity-basic noarch 42-0.3 fedora 694.0 B
fedora-repos noarch 42-0.2 fedora 4.9 KiB
fedora-repos-rawhide noarch 42-0.2 fedora 2.2 KiB
file s390x 5.45-7.fc41 fedora 103.3 KiB
file-libs s390x 5.45-7.fc41 fedora 9.9 MiB
filesystem s390x 3.18-29.fc42 fedora 106.0 B
fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB
forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB
fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B
gdb-minimal s390x 15.1-2.fc42 fedora 15.0 MiB
gdbm s390x 1:1.23-7.fc41 fedora 483.9 KiB
gdbm-libs s390x 1:1.23-7.fc41 fedora 133.4 KiB
ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B
glibc s390x 2.40.9000-1.fc42 fedora 5.3 MiB
glibc-common s390x 2.40.9000-1.fc42 fedora 1.1 MiB
glibc-gconv-extra s390x 2.40.9000-1.fc42 fedora 7.9 MiB
gmp s390x 1:6.3.0-2.fc41 fedora 770.0 KiB
gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB
go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB
jansson s390x 2.13.1-10.fc41 fedora 92.1 KiB
kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB
keyutils-libs s390x 1.6.3-4.fc41 fedora 54.2 KiB
krb5-libs s390x 1.21.3-2.fc41 fedora 2.4 MiB
libacl s390x 2.3.2-2.fc41 fedora 43.8 KiB
libarchive s390x 3.7.6-1.fc42 fedora 1.0 MiB
libattr s390x 2.5.2-4.fc41 fedora 28.3 KiB
libblkid s390x 2.40.2-8.fc42 fedora 286.4 KiB
libbrotli s390x 1.1.0-5.fc41 fedora 925.1 KiB
libcap s390x 2.70-4.fc41 fedora 234.2 KiB
libcap-ng s390x 0.8.5-3.fc41 fedora 76.7 KiB
libcom_err s390x 1.47.1-3.fc41 fedora 67.0 KiB
libcurl s390x 8.10.1-1.fc42 fedora 890.1 KiB
libeconf s390x 0.6.2-3.fc41 fedora 61.8 KiB
libevent s390x 2.1.12-14.fc41 fedora 938.8 KiB
libfdisk s390x 2.40.2-8.fc42 fedora 394.8 KiB
libffi s390x 3.4.6-3.fc42 fedora 65.9 KiB
libgcc s390x 14.2.1-3.fc42 fedora 177.2 KiB
libgomp s390x 14.2.1-3.fc42 fedora 531.2 KiB
libidn2 s390x 2.3.7-2.fc41 fedora 328.9 KiB
libmount s390x 2.40.2-8.fc42 fedora 375.8 KiB
libnghttp2 s390x 1.63.0-1.fc42 fedora 177.9 KiB
libnsl2 s390x 2.0.1-2.fc41 fedora 61.7 KiB
libpkgconf s390x 2.3.0-1.fc42 fedora 85.9 KiB
libpsl s390x 0.21.5-4.fc41 fedora 80.3 KiB
libpwquality s390x 1.4.5-11.fc41 fedora 420.9 KiB
libselinux s390x 3.7-6.fc42 fedora 192.9 KiB
libsemanage s390x 3.7-3.fc42 fedora 305.4 KiB
libsepol s390x 3.7-3.fc42 fedora 849.8 KiB
libsmartcols s390x 2.40.2-8.fc42 fedora 192.2 KiB
libssh s390x 0.11.1-1.fc42 fedora 585.3 KiB
libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B
libstdc++ s390x 14.2.1-3.fc42 fedora 3.1 MiB
libtasn1 s390x 4.19.0-9.fc41 fedora 187.5 KiB
libtirpc s390x 1.3.5-0.fc41 fedora 218.5 KiB
libtool-ltdl s390x 2.4.7-12.fc41 fedora 74.0 KiB
libunistring s390x 1.1-8.fc41 fedora 1.8 MiB
libuuid s390x 2.40.2-8.fc42 fedora 41.2 KiB
libverto s390x 0.3.2-9.fc41 fedora 29.3 KiB
libxcrypt s390x 4.4.36-7.fc41 fedora 274.7 KiB
libxml2 s390x 2.12.8-2.fc41 fedora 1.9 MiB
libzstd s390x 1.5.6-2.fc41 fedora 875.7 KiB
lua-libs s390x 5.4.6-6.fc41 fedora 320.9 KiB
lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB
lz4-libs s390x 1.10.0-1.fc41 fedora 201.3 KiB
mpfr s390x 4.2.1-5.fc41 fedora 698.7 KiB
ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB
ncurses-libs s390x 6.5-2.20240629.fc41 fedora 1.1 MiB
ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB
openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B
openldap s390x 2.6.8-5.fc41 fedora 683.6 KiB
openssl-libs s390x 1:3.2.2-8.fc42 fedora 6.1 MiB
p11-kit s390x 0.25.5-3.fc41 fedora 2.5 MiB
p11-kit-trust s390x 0.25.5-3.fc41 fedora 475.2 KiB
package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB
pam s390x 1.6.1-6.fc42 fedora 1.8 MiB
pam-libs s390x 1.6.1-6.fc42 fedora 138.4 KiB
pcre2 s390x 10.44-1.fc41.1 fedora 684.9 KiB
pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB
perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B
pkgconf s390x 2.3.0-1.fc42 fedora 92.4 KiB
pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB
pkgconf-pkg-config s390x 2.3.0-1.fc42 fedora 988.0 B
popt s390x 1.19-7.fc41 fedora 144.7 KiB
publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB
pyproject-srpm-macros noarch 1.15.0-1.fc42 fedora 1.9 KiB
python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB
qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B
qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B
readline s390x 8.2-11.fc42 fedora 556.8 KiB
rpm s390x 4.19.94-1.fc42 fedora 3.1 MiB
rpm-build-libs s390x 4.19.94-1.fc42 fedora 218.4 KiB
rpm-libs s390x 4.19.94-1.fc42 fedora 813.6 KiB
rpm-sequoia s390x 1.7.0-2.fc41 fedora 3.2 MiB
rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB
setup noarch 2.15.0-5.fc41 fedora 720.7 KiB
sqlite-libs s390x 3.46.0-4.fc41 fedora 1.6 MiB
systemd-libs s390x 256.5-1.fc42 fedora 2.1 MiB
util-linux-core s390x 2.40.2-8.fc42 fedora 1.5 MiB
xxhash-libs s390x 0.8.2-3.fc41 fedora 68.0 KiB
xz-libs s390x 1:5.6.2-2.fc41 fedora 226.1 KiB
zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB
zip s390x 3.0-41.fc41 fedora 750.2 KiB
zlib-ng-compat s390x 2.2.2-1.fc42 copr_base 117.3 KiB
zstd s390x 1.5.6-2.fc41 fedora 1.8 MiB
Installing groups:
Buildsystem building group
Transaction Summary:
Installing: 153 packages
Total size of inbound packages is 54 MiB. Need to download 0 B.
After this operation, 184 MiB extra will be used (install 184 MiB, remove 0 B).
[1/1] tar-2:1.35-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/2] bzip2-0:1.0.8-19.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/3] redhat-rpm-config-0:295-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/4] rpm-build-0:4.19.94-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/5] unzip-0:6.0-64.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[5/5] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/6] cpio-0:2.15-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[6/6] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/7] which-0:2.21-42.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[7/7] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/8] bash-0:5.2.32-2.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[8/8] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/9] coreutils-0:9.5-9.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[9/9] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/10] grep-0:3.11-9.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[10/10] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/11] patch-0:2.7.6-25.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[11/11] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/12] sed-0:4.9-3.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[12/12] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/13] shadow-utils-2:4.16.0-4.fc42.s3 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[13/13] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/14] util-linux-0:2.40.2-8.fc42.s390 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[14/14] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/15] diffutils-0:3.10-8.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[15/15] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/16] fedora-release-common-0:42-0.3. 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[16/16] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/17] findutils-1:4.10.0-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[17/17] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/18] gawk-0:5.3.0-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/19] glibc-minimal-langpack-0:2.40.9 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/21] info-0:7.1.1-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/25] libselinux-0:3.7-6.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/26] bzip2-libs-0:1.0.8-19.fc41.s390 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/27] ansible-srpm-macros-0:1-16.fc41 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/28] build-reproducibility-srpm-macr 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/30] efi-srpm-macros-0:5-12.fc41.noa 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/32] fonts-srpm-macros-1:2.0.5-17.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/38] kernel-srpm-macros-0:1.0-24.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/39] lua-srpm-macros-0:1-14.fc41.noa 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/41] openblas-srpm-macros-0:2-18.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/48] rpm-0:4.19.94-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/49] rust-srpm-macros-0:26.3-3.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/50] zig-srpm-macros-0:1-3.fc41.noar 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/51] zip-0:3.0-41.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/52] debugedit-0:5.0-17.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/53] elfutils-0:0.191-8.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/54] elfutils-libelf-0:0.191-8.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/55] libarchive-0:3.7.6-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/56] pkgconf-pkg-config-0:2.3.0-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/57] popt-0:1.19-7.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/58] readline-0:8.2-11.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/59] rpm-build-libs-0:4.19.94-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/61] zstd-0:1.5.6-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/62] filesystem-0:3.18-29.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/63] ncurses-libs-0:6.5-2.20240629.f 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/64] coreutils-common-0:9.5-9.fc42.s 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/66] libattr-0:2.5.2-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/67] libcap-0:2.70-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/68] openssl-libs-1:3.2.2-8.fc42.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/69] systemd-libs-0:256.5-1.fc42.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/70] pcre2-0:10.44-1.fc41.1.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/71] ed-0:1.20.2-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/72] audit-libs-0:4.0.2-1.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/73] libeconf-0:0.6.2-3.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/74] libsemanage-0:3.7-3.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/75] libxcrypt-0:4.4.36-7.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/76] pam-libs-0:1.6.1-6.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/77] setup-0:2.15.0-5.fc41.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/78] authselect-libs-0:1.5.0-7.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/79] libblkid-0:2.40.2-8.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/80] libcap-ng-0:0.8.5-3.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/82] libmount-0:2.40.2-8.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/83] libsmartcols-0:2.40.2-8.fc42.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/84] libuuid-0:2.40.2-8.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/85] pam-0:1.6.1-6.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/86] util-linux-core-0:2.40.2-8.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/87] fedora-repos-0:42-0.2.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/88] mpfr-0:4.2.1-5.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/89] glibc-common-0:2.40.9000-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/90] xz-libs-1:5.6.2-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/91] glibc-gconv-extra-0:2.40.9000-1 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/92] basesystem-0:11-21.fc41.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/93] libgcc-0:14.2.1-3.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/94] libsepol-0:3.7-3.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/95] add-determinism-0:0.3.6-1.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/96] file-libs-0:5.45-7.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/98] elfutils-libs-0:0.191-8.fc41.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/99] elfutils-debuginfod-client-0:0. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/100] libstdc++-0:14.2.1-3.fc42.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/104] pkgconf-0:2.3.0-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/107] lua-libs-0:5.4.6-6.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/108] rpm-sequoia-0:1.7.0-2.fc41.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/109] sqlite-libs-0:3.46.0-4.fc41.s 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/110] ncurses-base-0:6.5-2.20240629 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/111] ca-certificates-0:2024.2.69_v 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/112] crypto-policies-0:20240828-1. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/113] pcre2-syntax-0:10.44-1.fc41.1 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/114] authselect-0:1.5.0-7.fc41.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/115] gdbm-1:1.23-7.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/117] libnsl2-0:2.0.1-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/118] libpwquality-0:1.4.5-11.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/119] libtirpc-0:1.3.5-0.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/120] fedora-gpg-keys-0:42-0.2.noar 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/121] fedora-repos-rawhide-0:42-0.2 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/122] elfutils-default-yama-scope-0 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/123] libpkgconf-0:2.3.0-1.fc42.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/124] libffi-0:3.4.6-3.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[124/124] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/125] p11-kit-0:0.25.5-3.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[125/125] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/126] p11-kit-trust-0:0.25.5-3.fc41 100% | 0.0 B/s | 0.0 B | 00m00s
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[126/126] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/127] cracklib-0:2.9.11-6.fc41.s390 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/128] krb5-libs-0:1.21.3-2.fc41.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/129] libcom_err-0:1.47.1-3.fc41.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/130] libtasn1-0:4.19.0-9.fc41.s390 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/131] alternatives-0:1.30-1.fc41.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/132] keyutils-libs-0:1.6.3-4.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/133] libverto-0:0.3.2-9.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/134] zlib-ng-compat-0:2.2.2-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/135] binutils-0:2.43.50-1.fc42.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/136] jansson-0:2.13.1-10.fc41.s390 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/137] fedora-release-0:42-0.3.noarc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/138] gdb-minimal-0:15.1-2.fc42.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/139] xxhash-libs-0:0.8.2-3.fc41.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[139/139] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/140] fedora-release-identity-basic 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/141] libcurl-0:8.10.1-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/142] libbrotli-0:1.1.0-5.fc41.s390 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/143] libidn2-0:2.3.7-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/144] libnghttp2-0:1.63.0-1.fc42.s3 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/145] libpsl-0:0.21.5-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/146] libssh-0:0.11.1-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/147] openldap-0:2.6.8-5.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/148] libunistring-0:1.1-8.fc41.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/149] publicsuffix-list-dafsa-0:202 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/150] libssh-config-0:0.11.1-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/151] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/152] libevent-0:2.1.12-14.fc41.s39 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
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Running transaction
Importing PGP key 0x105EF944:
UserID : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0x105EF944:
UserID : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0xE99D6AD1:
UserID : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing PGP key 0x31645531:
UserID : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
Fingerprint: C6E7F081CF80E13146676E88829B606631645531
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[ 1/155] Verify package files 100% | 784.0 B/s | 153.0 B | 00m00s
[ 2/155] Prepare transaction 100% | 2.9 KiB/s | 153.0 B | 00m00s
[ 3/155] Installing libgcc-0:14.2.1-3. 100% | 174.7 MiB/s | 178.9 KiB | 00m00s
[ 4/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s
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[ 7/155] Installing fedora-gpg-keys-0: 100% | 42.0 MiB/s | 172.2 KiB | 00m00s
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warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[ 19/155] Installing glibc-0:2.40.9000- 100% | 188.2 MiB/s | 5.3 MiB | 00m00s
[ 20/155] Installing bash-0:5.2.32-2.fc 100% | 321.6 MiB/s | 8.4 MiB | 00m00s
[ 21/155] Installing glibc-common-0:2.4 100% | 160.3 MiB/s | 1.1 MiB | 00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[ 22/155] Installing glibc-gconv-extra- 100% | 242.1 MiB/s | 8.0 MiB | 00m00s
[ 23/155] Installing zlib-ng-compat-0:2 100% | 115.3 MiB/s | 118.1 KiB | 00m00s
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[ 26/155] Installing popt-0:1.19-7.fc41 100% | 73.9 MiB/s | 151.3 KiB | 00m00s
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[ 36/155] Installing elfutils-libelf-0: 100% | 295.2 MiB/s | 1.2 MiB | 00m00s
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[ 41/155] Installing gawk-0:5.3.0-4.fc4 100% | 259.2 MiB/s | 1.8 MiB | 00m00s
[ 42/155] Installing unzip-0:6.0-64.fc4 100% | 201.9 MiB/s | 413.5 KiB | 00m00s
[ 43/155] Installing file-libs-0:5.45-7 100% | 523.5 MiB/s | 9.9 MiB | 00m00s
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[ 54/155] Installing libsmartcols-0:2.4 100% | 188.7 MiB/s | 193.2 KiB | 00m00s
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[ 57/155] Installing sed-0:4.9-3.fc41.s 100% | 172.1 MiB/s | 881.4 KiB | 00m00s
[ 58/155] Installing findutils-1:4.10.0 100% | 270.4 MiB/s | 1.9 MiB | 00m00s
[ 59/155] Installing libmount-0:2.40.2- 100% | 184.0 MiB/s | 376.9 KiB | 00m00s
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[ 61/155] Installing lua-libs-0:5.4.6-6 100% | 157.3 MiB/s | 322.1 KiB | 00m00s
[ 62/155] Installing libffi-0:3.4.6-3.f 100% | 65.7 MiB/s | 67.3 KiB | 00m00s
[ 63/155] Installing libcom_err-0:1.47. 100% | 66.5 MiB/s | 68.1 KiB | 00m00s
[ 64/155] Installing libtasn1-0:4.19.0- 100% | 184.9 MiB/s | 189.3 KiB | 00m00s
[ 65/155] Installing p11-kit-0:0.25.5-3 100% | 250.4 MiB/s | 2.5 MiB | 00m00s
[ 66/155] Installing alternatives-0:1.3 100% | 70.0 MiB/s | 71.7 KiB | 00m00s
[ 67/155] Installing libunistring-0:1.1 100% | 295.6 MiB/s | 1.8 MiB | 00m00s
[ 68/155] Installing libidn2-0:2.3.7-2. 100% | 109.0 MiB/s | 334.9 KiB | 00m00s
[ 69/155] Installing libpsl-0:0.21.5-4. 100% | 79.5 MiB/s | 81.4 KiB | 00m00s
[ 70/155] Installing p11-kit-trust-0:0. 100% | 77.6 MiB/s | 476.8 KiB | 00m00s
[ 71/155] Installing zstd-0:1.5.6-2.fc4 100% | 262.1 MiB/s | 1.8 MiB | 00m00s
[ 72/155] Installing util-linux-core-0: 100% | 220.5 MiB/s | 1.5 MiB | 00m00s
[ 73/155] Installing tar-2:1.35-4.fc41. 100% | 302.0 MiB/s | 3.0 MiB | 00m00s
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[ 76/155] Installing zip-0:3.0-41.fc41. 100% | 245.5 MiB/s | 754.1 KiB | 00m00s
[ 77/155] Installing gdbm-1:1.23-7.fc41 100% | 159.1 MiB/s | 488.8 KiB | 00m00s
[ 78/155] Installing cyrus-sasl-lib-0:2 100% | 298.6 MiB/s | 2.4 MiB | 00m00s
[ 79/155] Installing libfdisk-0:2.40.2- 100% | 193.3 MiB/s | 395.9 KiB | 00m00s
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[ 94/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.6 KiB | 00m00s
[ 95/155] Installing libverto-0:0.3.2-9 100% | 30.3 MiB/s | 31.1 KiB | 00m00s
[ 96/155] Installing jansson-0:2.13.1-1 100% | 91.3 MiB/s | 93.5 KiB | 00m00s
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[ 98/155] Installing libbrotli-0:1.1.0- 100% | 226.4 MiB/s | 927.4 KiB | 00m00s
[ 99/155] Installing libnghttp2-0:1.63. 100% | 174.9 MiB/s | 179.1 KiB | 00m00s
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[104/155] Installing openssl-libs-1:3.2 100% | 279.2 MiB/s | 6.1 MiB | 00m00s
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[112/155] Installing cracklib-0:2.9.11- 100% | 85.1 MiB/s | 261.4 KiB | 00m00s
[113/155] Installing libpwquality-0:1.4 100% | 141.0 MiB/s | 433.3 KiB | 00m00s
[114/155] Installing libnsl2-0:2.0.1-2. 100% | 61.4 MiB/s | 62.8 KiB | 00m00s
[115/155] Installing pam-0:1.6.1-6.fc42 100% | 170.4 MiB/s | 1.9 MiB | 00m00s
[116/155] Installing libssh-0:0.11.1-1. 100% | 286.8 MiB/s | 587.4 KiB | 00m00s
[117/155] Installing rpm-sequoia-0:1.7. 100% | 289.1 MiB/s | 3.2 MiB | 00m00s
[118/155] Installing rpm-libs-0:4.19.94 100% | 265.3 MiB/s | 815.1 KiB | 00m00s
[119/155] Installing rpm-build-libs-0:4 100% | 214.1 MiB/s | 219.3 KiB | 00m00s
[120/155] Installing libevent-0:2.1.12- 100% | 306.8 MiB/s | 942.6 KiB | 00m00s
[121/155] Installing openldap-0:2.6.8-5 100% | 223.8 MiB/s | 687.4 KiB | 00m00s
[122/155] Installing libcurl-0:8.10.1-1 100% | 290.1 MiB/s | 891.2 KiB | 00m00s
[123/155] Installing elfutils-debuginfo 100% | 64.7 MiB/s | 66.3 KiB | 00m00s
[124/155] Installing elfutils-0:0.191-8 100% | 329.7 MiB/s | 3.0 MiB | 00m00s
[125/155] Installing binutils-0:2.43.50 100% | 332.2 MiB/s | 26.9 MiB | 00m00s
[126/155] Installing gdb-minimal-0:15.1 100% | 311.6 MiB/s | 15.0 MiB | 00m00s
[127/155] Installing debugedit-0:5.0-17 100% | 200.7 MiB/s | 205.5 KiB | 00m00s
[128/155] Installing curl-0:8.10.1-1.fc 100% | 59.5 MiB/s | 487.6 KiB | 00m00s
[129/155] Installing rpm-0:4.19.94-1.fc 100% | 167.0 MiB/s | 2.5 MiB | 00m00s
[130/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s
[131/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s
[132/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s
[133/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s
[134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s
[135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s
[136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s
[137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s
[138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s
[139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s
[140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s
[141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s
[142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s
[143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s
[144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s
[145/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s
[146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.4 KiB | 00m00s
[147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s
[148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s
[149/155] Installing redhat-rpm-config- 100% | 94.4 MiB/s | 193.2 KiB | 00m00s
[150/155] Installing rpm-build-0:4.19.9 100% | 102.1 MiB/s | 209.1 KiB | 00m00s
[151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s
[152/155] Installing util-linux-0:2.40. 100% | 177.6 MiB/s | 3.7 MiB | 00m00s
[153/155] Installing authselect-0:1.5.0 100% | 77.0 MiB/s | 157.7 KiB | 00m00s
[154/155] Installing which-0:2.21-42.fc 100% | 84.1 MiB/s | 86.1 KiB | 00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[155/155] Installing info-0:7.1.1-1.fc4 100% | 238.4 KiB/s | 409.5 KiB | 00m02s
Warning: skipped PGP checks for 2 packages from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-1.fc41.s390x
alternatives-1.30-1.fc41.s390x
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.s390x
authselect-1.5.0-7.fc41.s390x
authselect-libs-1.5.0-7.fc41.s390x
basesystem-11-21.fc41.noarch
bash-5.2.32-2.fc42.s390x
binutils-2.43.50-1.fc42.s390x
build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch
bzip2-1.0.8-19.fc41.s390x
bzip2-libs-1.0.8-19.fc41.s390x
ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch
coreutils-9.5-9.fc42.s390x
coreutils-common-9.5-9.fc42.s390x
cpio-2.15-2.fc41.s390x
cracklib-2.9.11-6.fc41.s390x
crypto-policies-20240828-1.git5f66e81.fc42.noarch
curl-8.10.1-1.fc42.s390x
cyrus-sasl-lib-2.1.28-27.fc41.s390x
debugedit-5.0-17.fc41.s390x
diffutils-3.10-8.fc41.s390x
dwz-0.15-7.fc41.s390x
ed-1.20.2-2.fc41.s390x
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.s390x
elfutils-debuginfod-client-0.191-8.fc41.s390x
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.s390x
elfutils-libs-0.191-8.fc41.s390x
fedora-gpg-keys-42-0.2.noarch
fedora-release-42-0.3.noarch
fedora-release-common-42-0.3.noarch
fedora-release-identity-basic-42-0.3.noarch
fedora-repos-42-0.2.noarch
fedora-repos-rawhide-42-0.2.noarch
file-5.45-7.fc41.s390x
file-libs-5.45-7.fc41.s390x
filesystem-3.18-29.fc42.s390x
findutils-4.10.0-4.fc41.s390x
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.2-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.s390x
gdb-minimal-15.1-2.fc42.s390x
gdbm-1.23-7.fc41.s390x
gdbm-libs-1.23-7.fc41.s390x
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-1.fc42.s390x
glibc-common-2.40.9000-1.fc42.s390x
glibc-gconv-extra-2.40.9000-1.fc42.s390x
glibc-minimal-langpack-2.40.9000-1.fc42.s390x
gmp-6.3.0-2.fc41.s390x
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.s390x
gzip-1.13-2.fc41.s390x
info-7.1.1-1.fc42.s390x
jansson-2.13.1-10.fc41.s390x
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.s390x
krb5-libs-1.21.3-2.fc41.s390x
libacl-2.3.2-2.fc41.s390x
libarchive-3.7.6-1.fc42.s390x
libattr-2.5.2-4.fc41.s390x
libblkid-2.40.2-8.fc42.s390x
libbrotli-1.1.0-5.fc41.s390x
libcap-2.70-4.fc41.s390x
libcap-ng-0.8.5-3.fc41.s390x
libcom_err-1.47.1-3.fc41.s390x
libcurl-8.10.1-1.fc42.s390x
libeconf-0.6.2-3.fc41.s390x
libevent-2.1.12-14.fc41.s390x
libfdisk-2.40.2-8.fc42.s390x
libffi-3.4.6-3.fc42.s390x
libgcc-14.2.1-3.fc42.s390x
libgomp-14.2.1-3.fc42.s390x
libidn2-2.3.7-2.fc41.s390x
libmount-2.40.2-8.fc42.s390x
libnghttp2-1.63.0-1.fc42.s390x
libnsl2-2.0.1-2.fc41.s390x
libpkgconf-2.3.0-1.fc42.s390x
libpsl-0.21.5-4.fc41.s390x
libpwquality-1.4.5-11.fc41.s390x
libselinux-3.7-6.fc42.s390x
libsemanage-3.7-3.fc42.s390x
libsepol-3.7-3.fc42.s390x
libsmartcols-2.40.2-8.fc42.s390x
libssh-0.11.1-1.fc42.s390x
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-3.fc42.s390x
libtasn1-4.19.0-9.fc41.s390x
libtirpc-1.3.5-0.fc41.s390x
libtool-ltdl-2.4.7-12.fc41.s390x
libunistring-1.1-8.fc41.s390x
libuuid-2.40.2-8.fc42.s390x
libverto-0.3.2-9.fc41.s390x
libxcrypt-4.4.36-7.fc41.s390x
libxml2-2.12.8-2.fc41.s390x
libzstd-1.5.6-2.fc41.s390x
lua-libs-5.4.6-6.fc41.s390x
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.s390x
mpfr-4.2.1-5.fc41.s390x
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.s390x
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.s390x
openssl-libs-3.2.2-8.fc42.s390x
p11-kit-0.25.5-3.fc41.s390x
p11-kit-trust-0.25.5-3.fc41.s390x
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-6.fc42.s390x
pam-libs-1.6.1-6.fc42.s390x
patch-2.7.6-25.fc41.s390x
pcre2-10.44-1.fc41.1.s390x
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.s390x
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.s390x
popt-1.19-7.fc41.s390x
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.15.0-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-11.fc42.s390x
redhat-rpm-config-295-1.fc42.noarch
rpm-4.19.94-1.fc42.s390x
rpm-build-4.19.94-1.fc42.s390x
rpm-build-libs-4.19.94-1.fc42.s390x
rpm-libs-4.19.94-1.fc42.s390x
rpm-sequoia-1.7.0-2.fc41.s390x
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.s390x
setup-2.15.0-5.fc41.noarch
shadow-utils-4.16.0-4.fc42.s390x
sqlite-libs-3.46.0-4.fc41.s390x
systemd-libs-256.5-1.fc42.s390x
tar-1.35-4.fc41.s390x
unzip-6.0-64.fc41.s390x
util-linux-2.40.2-8.fc42.s390x
util-linux-core-2.40.2-8.fc42.s390x
which-2.21-42.fc41.s390x
xxhash-libs-0.8.2-3.fc41.s390x
xz-5.6.2-2.fc41.s390x
xz-libs-5.6.2-2.fc41.s390x
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.s390x
zlib-ng-compat-2.2.2-1.fc42.s390x
zstd-1.5.6-2.fc41.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1725408000
Wrote: /builddir/build/SRPMS/R-rtracklayer-1.62.0-3.fc42.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-s390x-1727310661.696615/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1727310661.696615/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_a662mkx/R-rtracklayer/R-rtracklayer.spec) Config(child) 0 minutes 30 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/R-rtracklayer-1.62.0-3.fc42.src.rpm) Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1727310661.696615/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1727310661.696615/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1727310661.696615/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.19.94-1.fc42.s390x
rpm-sequoia-1.7.0-2.fc41.s390x
dnf5-5.2.6.2-1.fc42.s390x
dnf5-plugins-5.2.6.2-1.fc42.s390x
Finish: chroot init
Start: build phase for R-rtracklayer-1.62.0-3.fc42.src.rpm
Start: build setup for R-rtracklayer-1.62.0-3.fc42.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1725408000
Wrote: /builddir/build/SRPMS/R-rtracklayer-1.62.0-3.fc42.src.rpm
Updating and loading repositories:
fedora 100% | 1.1 KiB/s | 5.8 KiB | 00m05s
Copr repository 100% | 90.1 KiB/s | 1.5 KiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing:
R-BiocGenerics noarch 0.42.0-9.fc41 fedora 1.1 MiB
R-BiocIO noarch 1.6.0-9.fc41 fedora 876.3 KiB
R-Biostrings-devel s390x 2.64.1-9.fc41 fedora 16.4 KiB
R-GenomeInfoDb noarch 1.32.3-9.fc41 fedora 4.9 MiB
R-GenomicAlignments s390x 1.32.1-9.fc41 fedora 3.1 MiB
R-GenomicRanges s390x 1.48.0-9.fc41 fedora 3.6 MiB
R-IRanges-devel s390x 2.30.1-9.fc41 fedora 10.2 KiB
R-RCurl s390x 1.98.1.8-8.fc41 fedora 2.1 MiB
R-Rsamtools s390x 2.18.0-2.fc42 copr_base 6.4 MiB
R-S4Vectors-devel s390x 0.40.2-2.fc41 fedora 32.5 KiB
R-XML s390x 3.99.0.16.1-3.fc41 fedora 3.4 MiB
R-XVector-devel s390x 0.42.0-2.fc42 copr_base 17.3 KiB
R-core s390x 4.4.1-5.fc42 copr_base 103.0 MiB
R-devel s390x 4.4.1-5.fc42 copr_base 0.0 B
R-restfulr s390x 0.0.15-9.fc41 fedora 532.9 KiB
openssl-devel s390x 1:3.2.2-8.fc42 fedora 4.3 MiB
zlib-ng-compat-devel s390x 2.2.2-1.fc42 copr_base 106.8 KiB
Installing dependencies:
R-Biobase s390x 2.56.0-9.fc41 fedora 3.1 MiB
R-BiocParallel s390x 1.30.3-8.fc41 fedora 2.1 MiB
R-Biostrings s390x 2.64.1-9.fc41 fedora 15.3 MiB
R-DelayedArray s390x 0.22.0-12.fc41 fedora 4.0 MiB
R-GenomeInfoDbData noarch 1.2.8-9.fc41 fedora 11.0 MiB
R-IRanges s390x 2.30.1-9.fc41 fedora 3.8 MiB
R-MatrixGenerics noarch 1.8.1-9.fc41 fedora 710.3 KiB
R-S4Vectors s390x 0.40.2-2.fc41 fedora 4.0 MiB
R-SummarizedExperiment noarch 1.26.1-9.fc41 fedora 5.0 MiB
R-XVector s390x 0.42.0-2.fc42 copr_base 1.1 MiB
R-bitops s390x 1.0.8-1.fc41 fedora 61.4 KiB
R-core-devel s390x 4.4.1-5.fc42 copr_base 394.7 KiB
R-crayon noarch 1.5.1-8.fc41 fedora 235.6 KiB
R-formatR noarch 1.13-9.fc41 fedora 248.9 KiB
R-futile.logger noarch 1.4.3-24.fc41 fedora 151.3 KiB
R-futile.options noarch 1.0.1-17.fc41 fedora 30.9 KiB
R-java s390x 4.4.1-5.fc42 copr_base 0.0 B
R-java-devel s390x 4.4.1-5.fc42 copr_base 0.0 B
R-lambda.r noarch 1.2.4-17.fc41 fedora 148.1 KiB
R-matrixStats s390x 0.62.0-9.fc41 fedora 1.2 MiB
R-rjson s390x 0.2.21-8.fc41 fedora 363.7 KiB
R-rpm-macros noarch 1.2.1-11.fc41 fedora 5.6 KiB
R-snow noarch 0.4.4-17.fc41 fedora 140.2 KiB
R-yaml s390x 2.3.8-2.fc41 fedora 276.7 KiB
abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB
adobe-mappings-cmap noarch 20230622-4.fc41 fedora 14.4 MiB
adobe-mappings-cmap-deprecated noarch 20230622-4.fc41 fedora 582.1 KiB
adobe-mappings-pdf noarch 20190401-8.fc41 fedora 4.4 MiB
alsa-lib s390x 1.2.12-2.fc41 fedora 1.5 MiB
annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB
annobin-plugin-gcc s390x 12.70-1.fc42 fedora 985.3 KiB
avahi-libs s390x 0.8-30.fc42 copr_base 181.6 KiB
biber noarch 2.19-6.fc41 fedora 1.3 MiB
brotli s390x 1.1.0-5.fc41 fedora 35.6 KiB
brotli-devel s390x 1.1.0-5.fc41 fedora 65.6 KiB
bzip2-devel s390x 1.0.8-19.fc41 fedora 309.8 KiB
cairo s390x 1.18.0-4.fc42 copr_base 1.8 MiB
cairo-devel s390x 1.18.0-4.fc42 copr_base 2.3 MiB
cmake-filesystem s390x 3.28.3-7.fc41 fedora 0.0 B
copy-jdk-configs noarch 4.1-6.fc41 fedora 20.3 KiB
cpp s390x 14.2.1-3.fc42 fedora 25.5 MiB
cups-libs s390x 1:2.4.10-6.fc42 fedora 730.6 KiB
dbus-libs s390x 1:1.14.10-4.fc41 fedora 396.8 KiB
default-fonts-core-sans noarch 4.1-3.fc42 fedora 11.9 KiB
desktop-file-utils s390x 0.27-2.fc41 fedora 253.7 KiB
emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B
expat s390x 2.6.3-1.fc42 fedora 319.1 KiB
flexiblas s390x 3.4.4-3.fc41 fedora 48.5 KiB
flexiblas-devel s390x 3.4.4-3.fc41 fedora 4.8 MiB
flexiblas-netlib s390x 3.4.4-3.fc41 fedora 12.4 MiB
flexiblas-netlib64 s390x 3.4.4-3.fc41 fedora 12.4 MiB
flexiblas-openblas-openmp s390x 3.4.4-3.fc41 fedora 43.1 KiB
flexiblas-openblas-openmp64 s390x 3.4.4-3.fc41 fedora 43.2 KiB
fontconfig s390x 2.15.0-8.fc41 fedora 825.6 KiB
fontconfig-devel s390x 2.15.0-8.fc41 fedora 117.2 KiB
fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B
freetype s390x 2.13.2-6.fc41 fedora 934.9 KiB
freetype-devel s390x 2.13.2-6.fc41 fedora 7.8 MiB
fribidi s390x 1.0.15-2.fc41 fedora 379.9 KiB
gcc s390x 14.2.1-3.fc42 fedora 76.7 MiB
gcc-c++ s390x 14.2.1-3.fc42 fedora 28.7 MiB
gcc-gfortran s390x 14.2.1-3.fc42 fedora 27.5 MiB
gcc-plugin-annobin s390x 14.2.1-3.fc42 fedora 60.8 KiB
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perl-XString s390x 0.005-14.fc41 fedora 36.8 KiB
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perl-autovivification s390x 0.18-24.fc41 fedora 65.8 KiB
perl-base noarch 2.27-511.fc41 fedora 12.5 KiB
perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB
perl-deprecate noarch 0.04-511.fc41 fedora 6.5 KiB
perl-encoding s390x 4:3.00-511.fc41 fedora 149.5 KiB
perl-if noarch 0.61.000-511.fc41 fedora 5.8 KiB
perl-interpreter s390x 4:5.40.0-511.fc41 fedora 122.1 KiB
perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB
perl-libs s390x 4:5.40.0-511.fc41 fedora 10.2 MiB
perl-libwww-perl noarch 6.77-2.fc41 fedora 521.0 KiB
perl-locale noarch 1.12-511.fc41 fedora 6.5 KiB
perl-meta-notation noarch 5.40.0-511.fc41 fedora 2.0 KiB
perl-mro s390x 1.29-511.fc41 fedora 45.4 KiB
perl-namespace-autoclean noarch 0.29-19.fc41 fedora 41.1 KiB
perl-namespace-clean noarch 0.27-27.fc41 fedora 38.7 KiB
perl-open noarch 1.13-511.fc41 fedora 11.3 KiB
perl-overload noarch 1.37-511.fc41 fedora 71.5 KiB
perl-overloading noarch 0.02-511.fc41 fedora 4.8 KiB
perl-parent noarch 1:0.242-1.fc42 fedora 10.0 KiB
perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB
perl-sigtrap noarch 1.10-511.fc41 fedora 11.0 KiB
perl-subs noarch 1.04-511.fc41 fedora 2.1 KiB
perl-vars noarch 1.05-511.fc41 fedora 3.9 KiB
perl-version s390x 9:0.99.33-1.fc42 fedora 132.6 KiB
perltidy noarch 20240903-1.fc42 fedora 3.9 MiB
pixman s390x 0.43.4-2.fc41 fedora 576.3 KiB
pixman-devel s390x 0.43.4-2.fc41 fedora 49.4 KiB
python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB
python3 s390x 3.13.0~rc2-3.fc42 fedora 31.6 KiB
python3-libs s390x 3.13.0~rc2-3.fc42 fedora 40.8 MiB
python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB
sombok s390x 2.4.0-22.fc41 fedora 138.6 KiB
sysprof-capture-devel s390x 47.0-1.fc42 fedora 255.3 KiB
tcl s390x 1:8.6.14-2.fc41 fedora 4.4 MiB
tcl-devel s390x 1:8.6.14-2.fc41 fedora 790.8 KiB
teckit s390x 2.5.12-3.fc41 fedora 2.7 MiB
texlive-ae noarch 11:svn15878.1.4-73.fc41 fedora 451.9 KiB
texlive-algorithms noarch 11:svn42428-73.fc41 fedora 38.2 KiB
texlive-alphalph noarch 11:svn53087-73.fc41 fedora 375.9 KiB
texlive-amscls noarch 11:svn55378-73.fc41 fedora 1.4 MiB
texlive-amsfonts noarch 11:svn61937-73.fc41 fedora 5.9 MiB
texlive-amsmath noarch 11:svn63514-73.fc41 fedora 266.6 KiB
texlive-anysize noarch 11:svn15878.0-73.fc41 fedora 3.4 KiB
texlive-atbegshi noarch 11:svn53051-73.fc41 fedora 443.4 KiB
texlive-attachfile noarch 11:svn42099-73.fc41 fedora 32.0 KiB
texlive-attachfile2 noarch 11:svn57959-85.fc41 fedora 492.2 KiB
texlive-atveryend noarch 11:svn53108-73.fc41 fedora 409.9 KiB
texlive-auto-pst-pdf noarch 11:svn56596-73.fc41 fedora 14.8 KiB
texlive-auxhook noarch 11:svn53173-73.fc41 fedora 301.9 KiB
texlive-avantgar noarch 11:svn61983-73.fc41 fedora 1.2 MiB
texlive-babel noarch 11:svn65823-73.fc41 fedora 2.1 MiB
texlive-babel-english noarch 11:svn44495-73.fc41 fedora 44.4 KiB
texlive-babelbib noarch 11:svn57349-73.fc41 fedora 779.1 KiB
texlive-base s390x 11:20230311-85.fc41 fedora 19.0 MiB
texlive-beamer noarch 11:svn65984-73.fc41 fedora 702.9 KiB
texlive-bera noarch 11:svn20031.0-73.fc41 fedora 772.9 KiB
texlive-beton noarch 11:svn15878.0-73.fc41 fedora 11.8 KiB
texlive-biblatex noarch 11:svn66403-73.fc41 fedora 2.2 MiB
texlive-bibtex s390x 11:svn66186-85.fc41 fedora 798.7 KiB
texlive-bidi noarch 11:svn65572-73.fc41 fedora 1.2 MiB
texlive-bigintcalc noarch 11:svn53172-73.fc41 fedora 515.6 KiB
texlive-bitset noarch 11:svn53837-73.fc41 fedora 662.3 KiB
texlive-bookman noarch 11:svn61719-73.fc41 fedora 1.2 MiB
texlive-bookmark noarch 11:svn56885-73.fc41 fedora 569.3 KiB
texlive-booktabs noarch 11:svn53402-73.fc41 fedora 18.3 KiB
texlive-breakurl noarch 11:svn29901.1.40-73.fc41 fedora 17.1 KiB
texlive-breqn noarch 11:svn60881-73.fc41 fedora 167.4 KiB
texlive-caption noarch 11:svn66580-73.fc41 fedora 906.9 KiB
texlive-carlisle noarch 11:svn59577-73.fc41 fedora 31.2 KiB
texlive-catchfile noarch 11:svn53084-73.fc41 fedora 318.8 KiB
texlive-changepage noarch 11:svn15878.1.0c-73.fc41 fedora 27.3 KiB
texlive-charter noarch 11:svn15878.0-73.fc41 fedora 404.0 KiB
texlive-cite noarch 11:svn36428.5.5-73.fc41 fedora 62.3 KiB
texlive-cm noarch 11:svn57963-73.fc41 fedora 994.9 KiB
texlive-cm-super noarch 11:svn15878.0-73.fc41 fedora 65.0 MiB
texlive-cmap noarch 11:svn57640-73.fc41 fedora 36.2 KiB
texlive-collection-basic noarch 11:svn59159-73.fc41 fedora 0.0 B
texlive-collection-latex noarch 11:svn63515-73.fc41 fedora 0.0 B
texlive-collection-latexrecommended noarch 11:svn65512-73.fc41 fedora 0.0 B
texlive-colorprofiles noarch 11:svn49086-73.fc41 fedora 272.2 KiB
texlive-colortbl noarch 11:svn64015-73.fc41 fedora 21.0 KiB
texlive-courier noarch 11:svn61719-73.fc41 fedora 915.1 KiB
texlive-crop noarch 11:svn55424-73.fc41 fedora 26.7 KiB
texlive-csquotes noarch 11:svn64389-73.fc41 fedora 112.0 KiB
texlive-ctable noarch 11:svn38672-73.fc41 fedora 20.6 KiB
texlive-ctablestack noarch 11:svn38514-73.fc41 fedora 20.1 KiB
texlive-currfile noarch 11:svn64673-73.fc41 fedora 34.0 KiB
texlive-dehyph noarch 11:svn48599-73.fc41 fedora 239.9 KiB
texlive-dvipdfmx s390x 11:svn66203-85.fc41 fedora 3.8 MiB
texlive-dvips s390x 11:svn66203-85.fc41 fedora 1.6 MiB
texlive-ec noarch 11:svn25033.1.0-73.fc41 fedora 2.5 MiB
texlive-enctex noarch 11:svn34957.0-73.fc41 fedora 179.8 KiB
texlive-enumitem noarch 11:svn51423-73.fc41 fedora 59.4 KiB
texlive-epstopdf noarch 11:svn66461-85.fc41 fedora 39.3 KiB
texlive-epstopdf-pkg noarch 11:svn53546-73.fc41 fedora 386.5 KiB
texlive-eso-pic noarch 11:svn56658-73.fc41 fedora 27.7 KiB
texlive-etex noarch 11:svn66203-73.fc41 fedora 41.0 KiB
texlive-etex-pkg noarch 11:svn41784-73.fc41 fedora 18.6 KiB
texlive-etexcmds noarch 11:svn53171-73.fc41 fedora 321.0 KiB
texlive-etoolbox noarch 11:svn56554-73.fc41 fedora 66.7 KiB
texlive-euenc noarch 11:svn19795.0.1h-73.fc41 fedora 39.3 KiB
texlive-euler noarch 11:svn42428-73.fc41 fedora 20.7 KiB
texlive-everysel noarch 11:svn57489-73.fc41 fedora 457.9 KiB
texlive-everyshi noarch 11:svn57001-73.fc41 fedora 157.4 KiB
texlive-extsizes noarch 11:svn17263.1.4a-73.fc41 fedora 126.6 KiB
texlive-fancybox noarch 11:svn18304.1.4-73.fc41 fedora 40.7 KiB
texlive-fancyhdr noarch 11:svn64977-73.fc41 fedora 31.6 KiB
texlive-fancyref noarch 11:svn15878.0.9c-73.fc41 fedora 27.8 KiB
texlive-fancyvrb noarch 11:svn65585-73.fc41 fedora 66.2 KiB
texlive-filecontents noarch 11:svn52142-73.fc41 fedora 12.2 KiB
texlive-filehook noarch 11:svn64822-73.fc41 fedora 55.2 KiB
texlive-finstrut noarch 11:svn21719.0.5-73.fc41 fedora 25.6 KiB
texlive-firstaid noarch 11:svn64892-73.fc41 fedora 296.9 KiB
texlive-fix2col noarch 11:svn38770-73.fc41 fedora 16.7 KiB
texlive-float noarch 11:svn15878.1.3d-73.fc41 fedora 15.5 KiB
texlive-fontspec noarch 11:svn63386-73.fc41 fedora 329.1 KiB
texlive-footmisc noarch 11:svn62524-73.fc41 fedora 64.7 KiB
texlive-footnotehyper noarch 11:svn60374-73.fc41 fedora 30.5 KiB
texlive-fp noarch 11:svn49719-73.fc41 fedora 124.9 KiB
texlive-fpl noarch 11:svn54512-73.fc41 fedora 647.6 KiB
texlive-geometry noarch 11:svn61719-73.fc41 fedora 49.5 KiB
texlive-gettitlestring noarch 11:svn53170-73.fc41 fedora 338.8 KiB
texlive-glyphlist noarch 11:svn54074-85.fc41 fedora 90.3 KiB
texlive-graphics noarch 11:svn66204-73.fc41 fedora 124.5 KiB
texlive-graphics-cfg noarch 11:svn41448-73.fc41 fedora 3.0 KiB
texlive-graphics-def noarch 11:svn64487-73.fc41 fedora 98.2 KiB
texlive-grfext noarch 11:svn53024-73.fc41 fedora 327.8 KiB
texlive-grffile noarch 11:svn52756-73.fc41 fedora 379.3 KiB
texlive-gsftopk s390x 11:svn52851-85.fc41 fedora 50.9 KiB
texlive-helvetic noarch 11:svn61719-73.fc41 fedora 1.8 MiB
texlive-hobsub noarch 11:svn52810-73.fc41 fedora 80.2 KiB
texlive-hologo noarch 11:svn61719-73.fc41 fedora 664.7 KiB
texlive-hopatch noarch 11:svn65491-73.fc41 fedora 345.8 KiB
texlive-hycolor noarch 11:svn53584-73.fc41 fedora 411.7 KiB
texlive-hypdoc noarch 11:svn65678-73.fc41 fedora 358.3 KiB
texlive-hyperref noarch 11:svn65758-73.fc41 fedora 763.7 KiB
texlive-hyph-utf8 noarch 11:svn61719-73.fc41 fedora 73.9 KiB
texlive-hyphen-base noarch 11:svn66413-73.fc41 fedora 63.7 KiB
texlive-hyphenex noarch 11:svn57387-73.fc41 fedora 25.7 KiB
texlive-ifmtarg noarch 11:svn47544-73.fc41 fedora 9.2 KiB
texlive-ifplatform noarch 11:svn45533-73.fc41 fedora 12.7 KiB
texlive-iftex noarch 11:svn61910-73.fc41 fedora 28.7 KiB
texlive-index noarch 11:svn24099.4.1beta-73.fc41 fedora 60.6 KiB
texlive-infwarerr noarch 11:svn53023-73.fc41 fedora 306.3 KiB
texlive-intcalc noarch 11:svn53168-73.fc41 fedora 471.6 KiB
texlive-jknapltx noarch 11:svn19440.0-73.fc41 fedora 43.9 KiB
texlive-kastrup noarch 11:svn15878.0-73.fc41 fedora 3.4 KiB
texlive-knuth-lib noarch 11:svn57963-73.fc41 fedora 99.9 KiB
texlive-knuth-local noarch 11:svn57963-73.fc41 fedora 106.3 KiB
texlive-koma-script noarch 11:svn64685-73.fc41 fedora 9.9 MiB
texlive-kpathsea s390x 11:svn66209-85.fc41 fedora 2.1 MiB
texlive-kvdefinekeys noarch 11:svn53193-73.fc41 fedora 314.2 KiB
texlive-kvoptions noarch 11:svn63622-73.fc41 fedora 550.0 KiB
texlive-kvsetkeys noarch 11:svn64632-73.fc41 fedora 427.4 KiB
texlive-l3backend noarch 11:svn65573-73.fc41 fedora 1.1 MiB
texlive-l3experimental noarch 11:svn65621-73.fc41 fedora 190.3 KiB
texlive-l3kernel noarch 11:svn66094-73.fc41 fedora 1.4 MiB
texlive-l3packages noarch 11:svn65722-73.fc41 fedora 262.4 KiB
texlive-latex noarch 11:svn65161-85.fc41 fedora 40.2 MiB
texlive-latex-fonts noarch 11:svn28888.0-73.fc41 fedora 114.2 KiB
texlive-latex-lab noarch 11:svn64892-73.fc41 fedora 2.3 MiB
texlive-latexbug noarch 11:svn63596-73.fc41 fedora 282.4 KiB
texlive-latexconfig noarch 11:svn53525-73.fc41 fedora 8.3 KiB
texlive-letltxmacro noarch 11:svn53022-73.fc41 fedora 311.2 KiB
texlive-lib s390x 11:20230311-85.fc41 fedora 617.3 KiB
texlive-lineno noarch 11:svn65586-73.fc41 fedora 237.4 KiB
texlive-listings noarch 11:svn66222-73.fc41 fedora 580.0 KiB
texlive-lm noarch 11:svn65956-73.fc41 fedora 39.4 MiB
texlive-lm-math noarch 11:svn36915.1.959-73.fc41 fedora 735.8 KiB
texlive-logreq noarch 11:svn53003-73.fc41 fedora 26.3 KiB
texlive-ltabptch noarch 11:svn17533.1.74d-73.fc41 fedora 20.8 KiB
texlive-ltxcmds noarch 11:svn56421-73.fc41 fedora 424.3 KiB
texlive-ltxmisc noarch 11:svn21927.0-73.fc41 fedora 44.0 KiB
texlive-lua-alt-getopt noarch 11:svn56414-73.fc41 fedora 3.9 KiB
texlive-lua-uni-algos noarch 11:svn62204-73.fc41 fedora 129.1 KiB
texlive-luabidi noarch 11:svn54512-73.fc41 fedora 25.3 KiB
texlive-luahbtex s390x 11:svn66186-85.fc41 fedora 7.1 MiB
texlive-lualatex-math noarch 11:svn61464-73.fc41 fedora 28.4 KiB
texlive-lualibs noarch 11:svn64615-73.fc41 fedora 764.4 KiB
texlive-luaotfload noarch 11:svn64616-85.fc41 fedora 8.2 MiB
texlive-luatex s390x 11:svn66967-85.fc41 fedora 9.9 MiB
texlive-luatexbase noarch 11:svn52663-73.fc41 fedora 12.8 KiB
texlive-lwarp noarch 11:svn66259-85.fc41 fedora 4.8 MiB
texlive-makecmds noarch 11:svn15878.0-73.fc41 fedora 11.1 KiB
texlive-makeindex s390x 11:svn62517-85.fc41 fedora 510.7 KiB
texlive-marginnote noarch 11:svn48383-73.fc41 fedora 22.5 KiB
texlive-marvosym noarch 11:svn29349.2.2a-73.fc41 fedora 185.6 KiB
texlive-mathpazo noarch 11:svn52663-73.fc41 fedora 110.5 KiB
texlive-mathspec noarch 11:svn42773-73.fc41 fedora 52.4 KiB
texlive-mathtools noarch 11:svn63767-73.fc41 fedora 130.7 KiB
texlive-mdwtools noarch 11:svn15878.1.05.4-73.fc41 fedora 111.6 KiB
texlive-memoir noarch 11:svn65040-73.fc41 fedora 480.4 KiB
texlive-metafont s390x 11:svn66186-85.fc41 fedora 913.2 KiB
texlive-metalogo noarch 11:svn18611.0.12-73.fc41 fedora 15.7 KiB
texlive-mflogo noarch 11:svn42428-73.fc41 fedora 12.0 KiB
texlive-mfnfss noarch 11:svn46036-73.fc41 fedora 22.8 KiB
texlive-mfware s390x 11:svn66186-85.fc41 fedora 227.2 KiB
texlive-microtype noarch 11:svn66587-73.fc41 fedora 459.9 KiB
texlive-minitoc noarch 11:svn61719-73.fc41 fedora 534.1 KiB
texlive-mnsymbol noarch 11:svn18651.1.4-73.fc41 fedora 5.7 MiB
texlive-modes noarch 11:svn61719-73.fc41 fedora 389.9 KiB
texlive-mparhack noarch 11:svn59066-73.fc41 fedora 20.3 KiB
texlive-mptopdf noarch 11:svn65952-85.fc41 fedora 151.3 KiB
texlive-ms noarch 11:svn57473-73.fc41 fedora 18.4 KiB
texlive-multido noarch 11:svn18302.1.42-73.fc41 fedora 18.5 KiB
texlive-natbib noarch 11:svn20668.8.31b-73.fc41 fedora 132.7 KiB
texlive-newfloat noarch 11:svn52906-73.fc41 fedora 158.1 KiB
texlive-notoccite noarch 11:svn18129.0-73.fc41 fedora 2.3 KiB
texlive-ntgclass noarch 11:svn65522-73.fc41 fedora 282.6 KiB
texlive-oberdiek noarch 11:svn65521-85.fc41 fedora 12.3 MiB
texlive-pagesel noarch 11:svn56105-73.fc41 fedora 354.7 KiB
texlive-palatino noarch 11:svn61719-73.fc41 fedora 1.1 MiB
texlive-paralist noarch 11:svn43021-73.fc41 fedora 23.4 KiB
texlive-parallel noarch 11:svn15878.0-73.fc41 fedora 22.5 KiB
texlive-parskip noarch 11:svn58358-73.fc41 fedora 15.7 KiB
texlive-pdfcol noarch 11:svn64469-73.fc41 fedora 345.6 KiB
texlive-pdfcolfoot noarch 11:svn65512-73.fc41 fedora 335.8 KiB
texlive-pdfcolmk noarch 11:svn52912-73.fc41 fedora 19.6 KiB
texlive-pdfescape noarch 11:svn53082-73.fc41 fedora 375.9 KiB
texlive-pdflscape noarch 11:svn64851-73.fc41 fedora 343.3 KiB
texlive-pdfmanagement-testphase noarch 11:svn66532-73.fc41 fedora 11.6 MiB
texlive-pdfpages noarch 11:svn65319-73.fc41 fedora 105.7 KiB
texlive-pdftex s390x 11:svn66243-85.fc41 fedora 4.7 MiB
texlive-pdftexcmds noarch 11:svn55777-73.fc41 fedora 423.9 KiB
texlive-pgf noarch 11:svn65553-73.fc41 fedora 4.8 MiB
texlive-picture noarch 11:svn54867-73.fc41 fedora 323.3 KiB
texlive-placeins noarch 11:svn19848.2.2-73.fc41 fedora 4.6 KiB
texlive-plain noarch 11:svn57963-73.fc41 fedora 109.4 KiB
texlive-polyglossia noarch 11:svn65792-73.fc41 fedora 715.0 KiB
texlive-psfrag noarch 11:svn15878.3.04-73.fc41 fedora 12.3 KiB
texlive-pslatex noarch 11:svn57434-73.fc41 fedora 26.9 KiB
texlive-psnfss noarch 11:svn54694-73.fc41 fedora 101.0 KiB
texlive-pspicture noarch 11:svn15878.0-73.fc41 fedora 13.6 KiB
texlive-pst-3d noarch 11:svn17257.1.10-73.fc41 fedora 19.5 KiB
texlive-pst-coil noarch 11:svn62977-73.fc41 fedora 20.4 KiB
texlive-pst-eps noarch 11:svn15878.1.0-73.fc41 fedora 15.5 KiB
texlive-pst-fill noarch 11:svn60671-73.fc41 fedora 22.8 KiB
texlive-pst-grad noarch 11:svn15878.1.06-73.fc41 fedora 21.1 KiB
texlive-pst-math noarch 11:svn64732-73.fc41 fedora 22.3 KiB
texlive-pst-node noarch 11:svn61838-73.fc41 fedora 114.0 KiB
texlive-pst-ovl noarch 11:svn54963-73.fc41 fedora 12.4 KiB
texlive-pst-plot noarch 11:svn65346-73.fc41 fedora 129.7 KiB
texlive-pst-text noarch 11:svn49542-73.fc41 fedora 19.7 KiB
texlive-pst-tools noarch 11:svn60621-73.fc41 fedora 26.8 KiB
texlive-pst-tree noarch 11:svn60421-73.fc41 fedora 42.6 KiB
texlive-pstricks noarch 11:svn65346-73.fc41 fedora 468.9 KiB
texlive-pstricks-add noarch 11:svn65067-73.fc41 fedora 103.4 KiB
texlive-ragged2e noarch 11:svn66152-73.fc41 fedora 731.9 KiB
texlive-rcs noarch 11:svn15878.0-73.fc41 fedora 47.0 KiB
texlive-realscripts noarch 11:svn56594-73.fc41 fedora 23.1 KiB
texlive-refcount noarch 11:svn53164-73.fc41 fedora 348.0 KiB
texlive-rerunfilecheck noarch 11:svn63869-73.fc41 fedora 361.8 KiB
texlive-rsfs noarch 11:svn15878.0-73.fc41 fedora 97.8 KiB
texlive-sansmath noarch 11:svn17997.1.1-73.fc41 fedora 8.6 KiB
texlive-sansmathaccent noarch 11:svn53628-73.fc41 fedora 51.9 KiB
texlive-sauerj noarch 11:svn15878.0-73.fc41 fedora 27.0 KiB
texlive-section noarch 11:svn20180.0-73.fc41 fedora 38.2 KiB
texlive-seminar noarch 11:svn59801-73.fc41 fedora 195.9 KiB
texlive-sepnum noarch 11:svn20186.2.0-73.fc41 fedora 15.0 KiB
texlive-setspace noarch 11:svn65206-73.fc41 fedora 22.0 KiB
texlive-showexpl noarch 11:svn57414-73.fc41 fedora 21.8 KiB
texlive-stringenc noarch 11:svn52982-73.fc41 fedora 1.0 MiB
texlive-subfig noarch 11:svn15878.1.3-73.fc41 fedora 36.6 KiB
texlive-symbol noarch 11:svn61719-73.fc41 fedora 78.3 KiB
texlive-tex s390x 11:svn66186-85.fc41 fedora 449.2 KiB
texlive-tex-ini-files noarch 11:svn40533-73.fc41 fedora 8.1 KiB
texlive-texlive-common-doc noarch 11:svn54176-73.fc41 fedora 265.5 KiB
texlive-texlive-en noarch 11:svn66572-85.fc41 fedora 5.9 MiB
texlive-texlive-msg-translations noarch 11:svn66593-73.fc41 fedora 1.4 MiB
texlive-texlive-scripts noarch 11:svn66584-85.fc41 fedora 337.2 KiB
texlive-texlive.infra noarch 11:svn66512-85.fc41 fedora 1.0 MiB
texlive-textcase noarch 11:svn63868-73.fc41 fedora 11.2 KiB
texlive-thumbpdf noarch 11:svn62518-85.fc41 fedora 97.0 KiB
texlive-times noarch 11:svn61719-73.fc41 fedora 992.2 KiB
texlive-tipa noarch 11:svn29349.1.3-73.fc41 fedora 3.7 MiB
texlive-titlesec noarch 11:svn59845-73.fc41 fedora 97.8 KiB
texlive-tools noarch 11:svn64892-73.fc41 fedora 403.2 KiB
texlive-translator noarch 11:svn59412-73.fc41 fedora 494.7 KiB
texlive-transparent noarch 11:svn64852-73.fc41 fedora 302.0 KiB
texlive-typehtml noarch 11:svn17134.0-73.fc41 fedora 33.4 KiB
texlive-ucharcat noarch 11:svn38907-73.fc41 fedora 10.2 KiB
texlive-ucs noarch 11:svn64114-73.fc41 fedora 2.4 MiB
texlive-underscore noarch 11:svn18261.0-73.fc41 fedora 19.3 KiB
texlive-unicode-data noarch 11:svn64423-73.fc41 fedora 3.1 MiB
texlive-unicode-math noarch 11:svn61719-73.fc41 fedora 517.2 KiB
texlive-uniquecounter noarch 11:svn53162-73.fc41 fedora 312.0 KiB
texlive-url noarch 11:svn32528.3.4-73.fc41 fedora 21.4 KiB
texlive-utopia noarch 11:svn15878.0-73.fc41 fedora 540.6 KiB
texlive-varwidth noarch 11:svn24104.0.92-73.fc41 fedora 19.5 KiB
texlive-xcolor noarch 11:svn63563-73.fc41 fedora 79.3 KiB
texlive-xdvi s390x 11:svn62387-85.fc41 fedora 874.5 KiB
texlive-xetex s390x 11:svn66203-85.fc41 fedora 2.3 MiB
texlive-xetexconfig noarch 11:svn45845-73.fc41 fedora 305.0 B
texlive-xifthen noarch 11:svn38929-73.fc41 fedora 14.4 KiB
texlive-xkeyval noarch 11:svn63616-73.fc41 fedora 69.3 KiB
texlive-xltxtra noarch 11:svn56594-73.fc41 fedora 14.4 KiB
texlive-xpatch noarch 11:svn54563-73.fc41 fedora 26.8 KiB
texlive-xstring noarch 11:svn65551-73.fc41 fedora 56.1 KiB
texlive-xunicode noarch 11:svn30466.0.981-73.fc41 fedora 219.6 KiB
texlive-zapfding noarch 11:svn61719-73.fc41 fedora 79.5 KiB
texlive-zref noarch 11:svn62977-73.fc41 fedora 816.8 KiB
tk s390x 1:8.6.14-2.fc41 fedora 3.8 MiB
tk-devel s390x 1:8.6.14-2.fc41 fedora 984.8 KiB
tre s390x 0.8.0-45.20140228gitc2f5d13.fc41 fedora 79.7 KiB
tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB
tre-devel s390x 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB
ttmkfdir s390x 3.0.9-71.fc41 fedora 126.2 KiB
tzdata noarch 2024a-9.fc41 fedora 1.7 MiB
tzdata-java noarch 2024a-9.fc41 fedora 101.7 KiB
urw-base35-bookman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB
urw-base35-c059-fonts noarch 20200910-23.fc41 fedora 1.4 MiB
urw-base35-d050000l-fonts noarch 20200910-23.fc41 fedora 84.3 KiB
urw-base35-fonts noarch 20200910-23.fc41 fedora 5.3 KiB
urw-base35-fonts-common noarch 20200910-23.fc41 fedora 37.4 KiB
urw-base35-gothic-fonts noarch 20200910-23.fc41 fedora 1.2 MiB
urw-base35-nimbus-mono-ps-fonts noarch 20200910-23.fc41 fedora 1.0 MiB
urw-base35-nimbus-roman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB
urw-base35-nimbus-sans-fonts noarch 20200910-23.fc41 fedora 2.4 MiB
urw-base35-p052-fonts noarch 20200910-23.fc41 fedora 1.5 MiB
urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41 fedora 64.9 KiB
urw-base35-z003-fonts noarch 20200910-23.fc41 fedora 390.8 KiB
xdg-utils noarch 1.2.1-2.fc41 fedora 346.3 KiB
xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB
xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB
xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB
xpdf-libs s390x 1:4.05-5.fc41 fedora 2.0 MiB
xz-devel s390x 1:5.6.2-2.fc41 fedora 255.6 KiB
zziplib s390x 0.13.74-2.fc41 fedora 240.8 KiB
Transaction Summary:
Installing: 721 packages
Total size of inbound packages is 555 MiB. Need to download 54 MiB.
After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B).
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warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
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Warning: skipped PGP checks for 14 packages from repository: copr_base
Complete!
Finish: build setup for R-rtracklayer-1.62.0-3.fc42.src.rpm
Start: rpmbuild R-rtracklayer-1.62.0-3.fc42.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1725408000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.JaQ3jC
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ test -d /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ /usr/bin/rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.uzVn6D
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ rm -rf rtracklayer
+ /usr/bin/mkdir -p rtracklayer
+ cd rtracklayer
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rtracklayer_1.62.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i -e 's|zlibbioc,||' rtracklayer/DESCRIPTION
+ sed -i -e 's|import(zlibbioc)||' rtracklayer/NAMESPACE
+ pushd rtracklayer
~/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer/rtracklayer ~/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer
Patch #0 (0001-fix-format-security.patch):
+ echo 'Patch #0 (0001-fix-format-security.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/handlers.c
+ popd
~/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer
+ cp /builddir/build/SOURCES/rtracklayer_jimkent_license.txt .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zLfQqD
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd rtracklayer
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.AOd8JL
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ '[' /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ mkdir /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd rtracklayer
+ mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL rtracklayer -l /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library
* installing *source* package ‘rtracklayer’ ...
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for OPENSSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_rtracklayer.c -o R_init_rtracklayer.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c readGFF.c -o readGFF.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bbiHelper.c -o bbiHelper.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bigWig.c -o bigWig.o
bigWig.c: In function ‘BWGFile_query’:
bigWig.c:268:11: warning: ‘ans_nhits’ may be used uninitialized [-Wmaybe-uninitialized]
268 | INTEGER(ans_nhits)[i] = nqhits;
| ^~~~~~~~~~~~~~~~~~
bigWig.c:231:58: note: ‘ans_nhits’ was declared here
231 | SEXP ans, ans_start, ans_width, ans_score, ans_ranges, ans_nhits;
| ^~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bigBedHelper.c -o bigBedHelper.o
In file included from /usr/include/string.h:548,
from ucsc/common.h:33,
from bigBedHelper.h:5,
from bigBedHelper.c:1:
In function ‘strncpy’,
inlined from ‘bbNamedFileChunkKey’ at bigBedHelper.c:148:3:
/usr/include/bits/string_fortified.h:100:10: warning: ‘strncpy’ destination unchanged after copying no bytes [-Wstringop-truncation]
100 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
101 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bigBed.c -o bigBed.o
bigBed.c: In function ‘BBDFile_write’:
bigBed.c:338:10: warning: variable ‘extraIndexListEndOffset’ set but not used [-Wunused-but-set-variable]
338 | bits64 extraIndexListEndOffset = 0;
| ^~~~~~~~~~~~~~~~~~~~~~~
bigBed.c: In function ‘BBDFile_query’:
bigBed.c:195:7: warning: ‘name’ may be used uninitialized [-Wmaybe-uninitialized]
195 | SET_STRING_ELT(name, i, mkChar(bed->name));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bigBed.c:74:54: note: ‘name’ was declared here
74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score,
| ^~~~
bigBed.c:198:7: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized]
198 | INTEGER(score)[i] = bed->score;
| ^~~~~~~~~~~~~~
bigBed.c:74:60: note: ‘score’ was declared here
74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score,
| ^~~~~
bigBed.c:205:7: warning: ‘thickStart’ may be used uninitialized [-Wmaybe-uninitialized]
205 | INTEGER(thickStart)[i] = bed->thickStart;
| ^~~~~~~~~~~~~~~~~~~
bigBed.c:75:26: note: ‘thickStart’ was declared here
75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks,
| ^~~~~~~~~~
bigBed.c:204:7: warning: ‘thickWidth’ may be used uninitialized [-Wmaybe-uninitialized]
204 | INTEGER(thickWidth)[i] = bed->thickEnd - bed->thickStart + 1;
| ^~~~~~~~~~~~~~~~~~~
bigBed.c:75:38: note: ‘thickWidth’ was declared here
75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks,
| ^~~~~~~~~~
bigBed.c:209:7: warning: ‘itemRgb’ may be used uninitialized [-Wmaybe-uninitialized]
209 | SET_STRING_ELT(itemRgb, i, mkChar(rgbBuf));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bigBed.c:75:50: note: ‘itemRgb’ was declared here
75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks,
| ^~~~~~~
bigBed.c:218:7: warning: ‘blocks’ may be used uninitialized [-Wmaybe-uninitialized]
218 | SET_VECTOR_ELT(blocks, i, new_IRanges("IRanges", bstart, bwidth, R_NilValue));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bigBed.c:75:59: note: ‘blocks’ was declared here
75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks,
| ^~~~~~
bigBed.c:236:13: warning: ‘lengthIndex’ may be used uninitialized [-Wmaybe-uninitialized]
236 | INTEGER(lengthIndex)[efIndex] = index + 1;
| ^~~~~~~~~~~~~~~~~~~~
bigBed.c:76:31: note: ‘lengthIndex’ was declared here
76 | extraFields = R_NilValue, lengthIndex;
| ^~~~~~~~~~~
bigBed.c:226:22: warning: ‘typeId’ may be used uninitialized [-Wmaybe-uninitialized]
226 | switch(typeId[efIndex]) {
| ^
bigBed.c:141:13: note: ‘typeId’ was declared here
141 | SEXPTYPE *typeId;
| ^~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c chain_io.c -o chain_io.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c twoBit.c -o twoBit.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c handlers.c -o handlers.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/memgfx.c -o ucsc/memgfx.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/aliType.c -o ucsc/aliType.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/binRange.c -o ucsc/binRange.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/htmlColor.c -o ucsc/htmlColor.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/sqlList.c -o ucsc/sqlList.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/tokenizer.c -o ucsc/tokenizer.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/asParse.c -o ucsc/asParse.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/basicBed.c -o ucsc/basicBed.o
ucsc/basicBed.c: In function ‘bedParseRgb’:
ucsc/basicBed.c:997:1: warning: ‘strncpy’ specified bound 64 equals destination size [-Wstringop-truncation]
997 | strncpy(dupe, itemRgb, sizeof(dupe));
| ^
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bigBed.c -o ucsc/bigBed.o
ucsc/bigBed.c: In function ‘extractField’:
ucsc/bigBed.c:314:52: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
314 | warn("Not enough fields in extractField of %s", line);
| ^~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bbiRead.c -o ucsc/bbiRead.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o
ucsc/bwgQuery.c: In function ‘bigWigIntervalQuery’:
ucsc/bwgQuery.c:187:25: warning: variable ‘blockEnd’ set but not used [-Wunused-but-set-variable]
187 | char *blockPt, *blockEnd;
| ^~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/cirTree.c -o ucsc/cirTree.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/common.c -o ucsc/common.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dnaseq.c -o ucsc/dnaseq.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dnautil.c -o ucsc/dnautil.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/errAbort.c -o ucsc/errAbort.o
ucsc/errAbort.c: In function ‘getThreadVars’:
ucsc/errAbort.c:331:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
331 | write(STDERR_FILENO, errMsg, strlen(errMsg));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/hash.c -o ucsc/hash.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/linefile.c -o ucsc/linefile.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/localmem.c -o ucsc/localmem.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/sqlNum.c -o ucsc/sqlNum.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/zlibFace.c -o ucsc/zlibFace.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dystring.c -o ucsc/dystring.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/hmmstats.c -o ucsc/hmmstats.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/obscure.c -o ucsc/obscure.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/pipeline.c -o ucsc/pipeline.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/rangeTree.c -o ucsc/rangeTree.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/rbTree.c -o ucsc/rbTree.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/memalloc.c -o ucsc/memalloc.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dlist.c -o ucsc/dlist.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/hex.c -o ucsc/hex.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/filePath.c -o ucsc/filePath.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/htmlPage.c -o ucsc/htmlPage.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/udc.c -o ucsc/udc.o
In file included from ucsc/udc.c:41:
ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment]
178 | /* Use byteRange as a work-around alternate method to get file size (content-length).
ucsc/udc.c: In function ‘djb2_hash’:
ucsc/udc.c:1088:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
1088 | while (c = *str++)
| ^
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/net.c -o ucsc/net.o
In file included from ucsc/net.c:19:
ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment]
178 | /* Use byteRange as a work-around alternate method to get file size (content-length).
ucsc/net.c: In function ‘netConnectWithTimeout’:
ucsc/net.c:148:38: warning: passing argument 3 to ‘restrict’-qualified parameter aliases with argument 4 [-Wrestrict]
148 | res = select(sd+1, NULL, &mySet, &mySet, &tempTime);
| ^~~~~~ ~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bits.c -o ucsc/bits.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/twoBit.c -o ucsc/twoBit.o
In file included from ucsc/twoBit.c:15:
ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment]
178 | /* Use byteRange as a work-around alternate method to get file size (content-length).
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/internet.c -o ucsc/internet.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/https.c -o ucsc/https.o
In file included from ucsc/https.c:17:
ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment]
178 | /* Use byteRange as a work-around alternate method to get file size (content-length).
ucsc/https.c: In function ‘openSslInit’:
ucsc/https.c:76:5: warning: ‘ERR_load_SSL_strings’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations]
76 | ERR_load_SSL_strings();
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/openssl/sslerr.h:17,
from /usr/include/openssl/ssl.h:44,
from ucsc/https.c:8:
/usr/include/openssl/sslerr_legacy.h:29:27: note: declared here
29 | OSSL_DEPRECATEDIN_3_0 int ERR_load_SSL_strings(void);
| ^~~~~~~~~~~~~~~~~~~~
ucsc/https.c: At top level:
ucsc/https.c:27:13: warning: ‘openssl_locking_callback’ defined but not used [-Wunused-function]
27 | static void openssl_locking_callback(int mode, int n, const char * file, int line)
| ^~~~~~~~~~~~~~~~~~~~~~~~
ucsc/https.c:22:22: warning: ‘openssl_id_callback’ defined but not used [-Wunused-function]
22 | static unsigned long openssl_id_callback(void)
| ^~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/base64.c -o ucsc/base64.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/verbose.c -o ucsc/verbose.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/os.c -o ucsc/os.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/wildcmp.c -o ucsc/wildcmp.o
gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/_portimpl.c -o ucsc/_portimpl.o
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bbiHelper.o bigWig.o bigBedHelper.o bigBed.o chain_io.o twoBit.o handlers.o utils.o ucsc/memgfx.o ucsc/aliType.o ucsc/binRange.o ucsc/htmlColor.o ucsc/sqlList.o ucsc/tokenizer.o ucsc/asParse.o ucsc/basicBed.o ucsc/bigBed.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/hex.o ucsc/filePath.o ucsc/htmlPage.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -lssl -lcrypto -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library/00LOCK-rtracklayer/00new/rtracklayer/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘offset’ from package ‘stats’ in package ‘rtracklayer’
** help
*** installing help indices
converting help for package ‘rtracklayer’
finding HTML links ... done
BEDFile-class html
BamFile-methods html
Bed15TrackLine-class html
BigBedFile html
finding level-2 HTML links ... done
BigBedSelection html
BigWigFile html
BigWigSelection-class html
BrowserViewList-class html
Chain-class html
FastaFile-class html
GFFFile-class html
GRangesForUCSCGenome html
GenomicData html
GenomicSelection html
IntegerRangesList-methods html
Quickload-class html
QuickloadGenome-class html
TabixFile-methods html
TrackDb-class html
TrackHub-class html
TrackHubGenome-class html
TwoBitFile-class html
UCSCData-class html
UCSCFile-class html
UCSCSchema-class html
UCSCTableQuery-class html
WIGFile-class html
activeView-methods html
asBED html
asGFF html
basicTrackLine-class html
blocks-methods html
browseGenome html
browserSession-class html
browserSession-methods html
browserView-class html
browserView-methods html
browserViews-methods html
cpneTrack html
genomeBrowsers html
laySequence-methods html
layTrack-methods html
liftOver html
readGFF html
targets html
tracks-methods html
ucscGenomes html
ucscSession-class html
ucscTrackLine-class html
ucscTrackModes-class html
ucscTrackModes-methods html
ucscView-class html
wigToBigWig html
wigTrackLine-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rtracklayer)
+ test -d rtracklayer/src
+ cd rtracklayer/src
+ rm -f IRanges_stubs.o R_init_rtracklayer.o S4Vectors_stubs.o XVector_stubs.o bbiHelper.o bigBed.o bigBedHelper.o bigWig.o chain_io.o handlers.o readGFF.o twoBit.o utils.o rtracklayer.so
+ rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library/R.css
+ rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.62.0-3.fc42 --unique-debug-suffix -1.62.0-3.fc42.s390x --unique-debug-src-base R-rtracklayer-1.62.0-3.fc42.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/R-rtracklayer-1.62.0-3.fc42.s390x
2226 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT
Scanned 37 directories and 727 files,
processed 537 inodes,
0 modified (0 replaced + 0 rewritten),
0 unsupported format, 0 errors
Reading /builddir/build/BUILD/R-rtracklayer-1.62.0-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Xnu2nR
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd rtracklayer
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-rtracklayer-1.62.0-3.fc42.s390x
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.7NyyIr
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ cd rtracklayer
+ LICENSEDIR=/builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/share/licenses/R-rtracklayer
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/share/licenses/R-rtracklayer
+ cp -pr /builddir/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer/rtracklayer_jimkent_license.txt /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/share/licenses/R-rtracklayer
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: R(rtracklayer) = 1.62.0 R-rtracklayer = 1.62.0-3.fc42 R-rtracklayer(s390-64) = 1.62.0-3.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(ABI) = 4.4 R(BiocGenerics) >= 0.35.3 R(BiocIO) R(Biostrings) >= 2.47.6 R(GenomeInfoDb) >= 1.15.2 R(GenomicAlignments) >= 1.15.6 R(GenomicRanges) >= 1.37.2 R(IRanges) >= 2.13.13 R(RCurl) >= 1.4.2 R(Rsamtools) >= 1.31.2 R(S4Vectors) >= 0.23.18 R(XML) >= 1.98.0 R(XVector) >= 0.19.7 R(methods) R(restfulr) >= 0.0.13 R(tools) R-core >= 3.5.0 libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.28)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcrypto.so.3()(64bit) libcrypto.so.3(OPENSSL_3.0.0)(64bit) libssl.so.3()(64bit) libssl.so.3(OPENSSL_3.0.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Suggests: R(BSgenome) >= 1.33.4 R(RUnit)
Processing files: R-rtracklayer-debugsource-1.62.0-3.fc42.s390x
Provides: R-rtracklayer-debugsource = 1.62.0-3.fc42 R-rtracklayer-debugsource(s390-64) = 1.62.0-3.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-rtracklayer-debuginfo-1.62.0-3.fc42.s390x
Provides: R-rtracklayer-debuginfo = 1.62.0-3.fc42 R-rtracklayer-debuginfo(s390-64) = 1.62.0-3.fc42 debuginfo(build-id) = 04dc2dc161e628b48197b6220d5194b1157dd7ec
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-rtracklayer-debugsource(s390-64) = 1.62.0-3.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT
Wrote: /builddir/build/RPMS/R-rtracklayer-debuginfo-1.62.0-3.fc42.s390x.rpm
Wrote: /builddir/build/RPMS/R-rtracklayer-debugsource-1.62.0-3.fc42.s390x.rpm
Wrote: /builddir/build/RPMS/R-rtracklayer-1.62.0-3.fc42.s390x.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.TzJBN0
+ umask 022
+ cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ test -d /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild R-rtracklayer-1.62.0-3.fc42.src.rpm
Finish: build phase for R-rtracklayer-1.62.0-3.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1727310661.696615/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/R-rtracklayer-1.62.0-3.fc42.src.rpm) Config(child) 2 minutes 43 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "R-rtracklayer",
"epoch": null,
"version": "1.62.0",
"release": "3.fc42",
"arch": "src"
},
{
"name": "R-rtracklayer",
"epoch": null,
"version": "1.62.0",
"release": "3.fc42",
"arch": "s390x"
},
{
"name": "R-rtracklayer-debuginfo",
"epoch": null,
"version": "1.62.0",
"release": "3.fc42",
"arch": "s390x"
},
{
"name": "R-rtracklayer-debugsource",
"epoch": null,
"version": "1.62.0",
"release": "3.fc42",
"arch": "s390x"
}
]
}
RPMResults finished