Mock Version: 1.4.2
Mock Version: 1.4.2
Mock Version: 1.4.2
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'], chrootPath='/var/lib/mock/583313-epel-7-x86_64/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f93773c64a8>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--private-network']printOutput=True)
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'], chrootPath='/var/lib/mock/583313-epel-7-x86_64/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f93773c64a8>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--private-network']printOutput=True)
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3c55428bedd1469aacc9eb30d8a9db45', '-D', '/var/lib/mock/583313-epel-7-x86_64/root', '-a', '--private-network', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3c55428bedd1469aacc9eb30d8a9db45', '-D', '/var/lib/mock/583313-epel-7-x86_64/root', '-a', '--private-network', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
warning: Could not canonicalize hostname: 3c55428bedd1469aacc9eb30d8a9db45
warning: Could not canonicalize hostname: 3c55428bedd1469aacc9eb30d8a9db45
Building target platforms: x86_64
Building target platforms: x86_64
Building for target x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/bowtie2-2.3.2-1.el7.centos.src.rpm
Wrote: /builddir/build/SRPMS/bowtie2-2.3.2-1.el7.centos.src.rpm
Child return code was: 0
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'], chrootPath='/var/lib/mock/583313-epel-7-x86_64/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f93773c64a8>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--private-network', '--private-network']printOutput=True)
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'], chrootPath='/var/lib/mock/583313-epel-7-x86_64/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f93773c64a8>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--private-network', '--private-network']printOutput=True)
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5ea72e2ef93f48ad833e55508c4e64a6', '-D', '/var/lib/mock/583313-epel-7-x86_64/root', '-a', '--private-network', '--private-network', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5ea72e2ef93f48ad833e55508c4e64a6', '-D', '/var/lib/mock/583313-epel-7-x86_64/root', '-a', '--private-network', '--private-network', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bowtie2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building target platforms: x86_64
Building for target x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.YaCT3E
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.YaCT3E
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bowtie2-2.3.2
+ rm -rf bowtie2-2.3.2
+ /usr/bin/unzip -qq /builddir/build/SOURCES/bowtie2-2.3.2-source.zip
+ /usr/bin/unzip -qq /builddir/build/SOURCES/bowtie2-2.3.2-source.zip
+ STATUS=0
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ '[' 0 -ne 0 ']'
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ chmod +x example/reads/simulate.pl
+ chmod +x example/reads/simulate.pl
+ exit 0
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IA5MDg
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IA5MDg
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ make -j2 BITS=64 WITH_TBB=1 'LIBS=-lpthread -ltbb -ltbbmalloc -lz' SSE_FLAG= 'CXX=g++ -std=gnu++98'
+ make -j2 BITS=64 WITH_TBB=1 'LIBS=-lpthread -ltbb -ltbbmalloc -lz' SSE_FLAG= 'CXX=g++ -std=gnu++98'
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DNDEBUG -Wall \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DNDEBUG -Wall \
	 -I third_party \
	 -I third_party \
	-o bowtie2-build-s bt2_build.cpp \
	-o bowtie2-build-s bt2_build.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \
	-lpthread -ltbb -ltbbmalloc -lz 
	-lpthread -ltbb -ltbbmalloc -lz 
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
	 -I third_party \
	 -I third_party \
	-o bowtie2-build-l bt2_build.cpp \
	-o bowtie2-build-l bt2_build.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \
	-lpthread -ltbb -ltbbmalloc -lz 
	-lpthread -ltbb -ltbbmalloc -lz 
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DNDEBUG -Wall \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DNDEBUG -Wall \
	 -I third_party \
	 -I third_party \
	-o bowtie2-align-s bt2_search.cpp \
	-o bowtie2-align-s bt2_search.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \
	-lpthread -ltbb -ltbbmalloc -lz 
	-lpthread -ltbb -ltbbmalloc -lz 
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \
	 -I third_party \
	 -I third_party \
	-o bowtie2-align-l bt2_search.cpp \
	-o bowtie2-align-l bt2_search.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \
	-lpthread -ltbb -ltbbmalloc -lz 
	-lpthread -ltbb -ltbbmalloc -lz 
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 \
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 \
	-DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_INSPECT_MAIN -Wall \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_INSPECT_MAIN -Wall \
	 -I third_party -I . \
	 -I third_party -I . \
	-o bowtie2-inspect-s bt2_inspect.cpp \
	-o bowtie2-inspect-s bt2_inspect.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp \
	-lpthread -ltbb -ltbbmalloc -lz 
	-lpthread -ltbb -ltbbmalloc -lz 
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 \
g++ -std=gnu++98 -O3 -m64  -funroll-loops -g3 \
	-DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-DCOMPILER_OPTIONS="\"-O3 -m64  -funroll-loops -g3 -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -DPOPCNT_CAPABILITY -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_INSPECT_MAIN  -DBOWTIE_64BIT_INDEX -Wall \
	-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -std=gnu++98 -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DBOWTIE_MM  -DBOWTIE2 -DBOWTIE_INSPECT_MAIN  -DBOWTIE_64BIT_INDEX -Wall \
	 -I third_party -I . \
	 -I third_party -I . \
	-o bowtie2-inspect-l bt2_inspect.cpp \
	-o bowtie2-inspect-l bt2_inspect.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp \
	-lpthread -ltbb -ltbbmalloc -lz 
	-lpthread -ltbb -ltbbmalloc -lz 
/bin/sh: hostname: command not found
/bin/sh: hostname: command not found
+ exit 0
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.kUBCQc
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.kUBCQc
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64 '!=' / ']'
+ '[' /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ rm -rf /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ mkdir /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ rm -rf /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ rm -rf /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ make install DESTDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64 prefix=/usr
+ make install DESTDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64 prefix=/usr
mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin
mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin
for file in bowtie2-build-s bowtie2-build-l bowtie2-align-s bowtie2-align-l bowtie2-inspect-s bowtie2-inspect-l bowtie2-inspect bowtie2-build bowtie2 ; do \
for file in bowtie2-build-s bowtie2-build-l bowtie2-align-s bowtie2-align-l bowtie2-inspect-s bowtie2-inspect-l bowtie2-inspect bowtie2-build bowtie2 ; do \
	cp -f $file /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin ; \
	cp -f $file /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin ; \
done
done
+ mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64//usr/share/bowtie2
+ mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64//usr/share/bowtie2
+ cp -a example scripts /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64//usr/share/bowtie2/
+ cp -a example scripts /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64//usr/share/bowtie2/
+ ln -s bowtie2-align-s /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64//usr/bin/bowtie2-align
+ ln -s bowtie2-align-s /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64//usr/bin/bowtie2-align
+ chmod 755 example/reads/simulate.pl
+ chmod 755 example/reads/simulate.pl
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bowtie2-2.3.2
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bowtie2-2.3.2
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-inspect-l
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-inspect-l
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-inspect-s
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-inspect-s
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-align-l
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-align-l
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-align-s
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-align-s
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-build-l
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-build-l
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-build-s
extracting debug info from /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/bin/bowtie2-build-s
/usr/lib/rpm/sepdebugcrcfix: Updated 6 CRC32s, 0 CRC32s did match.
/usr/lib/rpm/sepdebugcrcfix: Updated 6 CRC32s, 0 CRC32s did match.
symlinked /usr/lib/debug/usr/bin/bowtie2-align-s.debug to /usr/lib/debug/usr/bin/bowtie2-align.debug
symlinked /usr/lib/debug/usr/bin/bowtie2-align-s.debug to /usr/lib/debug/usr/bin/bowtie2-align.debug
4819 blocks
4819 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.4YkG1o
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.4YkG1o
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ exit 0
+ exit 0
Processing files: bowtie2-2.3.2-1.el7.centos.x86_64
Processing files: bowtie2-2.3.2-1.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.qPcmdB
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.qPcmdB
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ DOCDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ DOCDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ export DOCDIR
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr doc/style.css doc/manual.html /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr doc/style.css doc/manual.html /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr AUTHORS /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr AUTHORS /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr NEWS /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr NEWS /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr MANUAL /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr MANUAL /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr TUTORIAL /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ cp -pr TUTORIAL /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/doc/bowtie2-2.3.2
+ exit 0
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.8xG3qN
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.8xG3qN
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-2.3.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-2.3.2
+ export LICENSEDIR
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-2.3.2
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-2.3.2
+ cp -pr LICENSE /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-2.3.2
+ cp -pr LICENSE /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-2.3.2
+ exit 0
+ exit 0
Finding  Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u "
Finding  Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u "
Finding  Requires(interp): 
Finding  Requires(interp): 
Finding  Requires(rpmlib): 
Finding  Requires(rpmlib): 
Finding  Requires(verify): 
Finding  Requires(verify): 
Finding  Requires(pre): 
Finding  Requires(pre): 
Finding  Requires(post): 
Finding  Requires(post): 
Finding  Requires(preun): 
Finding  Requires(preun): 
Finding  Requires(postun): 
Finding  Requires(postun): 
Finding  Requires(pretrans): 
Finding  Requires(pretrans): 
Finding  Requires(posttrans): 
Finding  Requires(posttrans): 
Finding  Requires: /bin/sh -c " /usr/bin/grep -v  '/usr/share/bowtie2/example' |  while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u "
Finding  Requires: /bin/sh -c " /usr/bin/grep -v  '/usr/share/bowtie2/example' |  while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u "
Provides: bowtie = 2.3.2 bowtie2 = 2.3.2-1.el7.centos bowtie2(x86-64) = 2.3.2-1.el7.centos
Provides: bowtie = 2.3.2 bowtie2 = 2.3.2-1.el7.centos bowtie2(x86-64) = 2.3.2-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires: /bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtbbmalloc.so.2()(64bit) libtbb.so.2()(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0.2)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) libz.so.1(ZLIB_1.2.3.5)(64bit) perl(Config) perl(File::Spec) perl(FindBin) perl(Getopt::Long) perl(POSIX) perl(strict) perl(warnings) rtld(GNU_HASH) /usr/bin/env /usr/bin/perl
Requires: /bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtbbmalloc.so.2()(64bit) libtbb.so.2()(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0.2)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) libz.so.1(ZLIB_1.2.3.5)(64bit) perl(Config) perl(File::Spec) perl(FindBin) perl(Getopt::Long) perl(POSIX) perl(strict) perl(warnings) rtld(GNU_HASH) /usr/bin/env /usr/bin/perl
Obsoletes: bowtie < 2.0
Obsoletes: bowtie < 2.0
Processing files: bowtie2-example-2.3.2-1.el7.centos.noarch
Processing files: bowtie2-example-2.3.2-1.el7.centos.noarch
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.uLqHva
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.uLqHva
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-example-2.3.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-example-2.3.2
+ export LICENSEDIR
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-example-2.3.2
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-example-2.3.2
+ cp -pr LICENSE /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-example-2.3.2
+ cp -pr LICENSE /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64/usr/share/licenses/bowtie2-example-2.3.2
+ exit 0
+ exit 0
Finding  Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u "
Finding  Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u "
Finding  Requires(interp): 
Finding  Requires(interp): 
Finding  Requires(rpmlib): 
Finding  Requires(rpmlib): 
Finding  Requires(verify): 
Finding  Requires(verify): 
Finding  Requires(pre): 
Finding  Requires(pre): 
Finding  Requires(post): 
Finding  Requires(post): 
Finding  Requires(preun): 
Finding  Requires(preun): 
Finding  Requires(postun): 
Finding  Requires(postun): 
Finding  Requires(pretrans): 
Finding  Requires(pretrans): 
Finding  Requires(posttrans): 
Finding  Requires(posttrans): 
Finding  Requires: /bin/sh -c " /usr/bin/grep -v  '/usr/share/bowtie2/example' |  while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u "
Finding  Requires: /bin/sh -c " /usr/bin/grep -v  '/usr/share/bowtie2/example' |  while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u "
Provides: bowtie2-example = 2.3.2-1.el7.centos
Provides: bowtie2-example = 2.3.2-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Conflicts: bowtie2 < 2.2.9-2
Conflicts: bowtie2 < 2.2.9-2
Processing files: bowtie2-debuginfo-2.3.2-1.el7.centos.x86_64
Processing files: bowtie2-debuginfo-2.3.2-1.el7.centos.x86_64
Provides: bowtie2-debuginfo = 2.3.2-1.el7.centos bowtie2-debuginfo(x86-64) = 2.3.2-1.el7.centos
Provides: bowtie2-debuginfo = 2.3.2-1.el7.centos bowtie2-debuginfo(x86-64) = 2.3.2-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
warning: Could not canonicalize hostname: 5ea72e2ef93f48ad833e55508c4e64a6
warning: Could not canonicalize hostname: 5ea72e2ef93f48ad833e55508c4e64a6
Wrote: /builddir/build/RPMS/bowtie2-2.3.2-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/bowtie2-2.3.2-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/bowtie2-example-2.3.2-1.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/bowtie2-example-2.3.2-1.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/bowtie2-debuginfo-2.3.2-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/bowtie2-debuginfo-2.3.2-1.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.sS2y1r
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.sS2y1r
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bowtie2-2.3.2
+ cd bowtie2-2.3.2
+ rm -rf /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ rm -rf /builddir/build/BUILDROOT/bowtie2-2.3.2-1.el7.centos.x86_64
+ exit 0
+ exit 0
Child return code was: 0
Child return code was: 0