Mock Version: 1.4.4
Mock Version: 1.4.4
Mock Version: 1.4.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9937a4f8d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True)
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9937a4f8d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
warning: Could not canonicalize hostname: copr-builder-249271573.novalocal
warning: Could not canonicalize hostname: copr-builder-249271573.novalocal
Building target platforms: x86_64
Building target platforms: x86_64
Building for target x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/bedops-2.4.26-1.el7.centos.src.rpm
Wrote: /builddir/build/SRPMS/bedops-2.4.26-1.el7.centos.src.rpm
Child return code was: 0
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9937a4f8d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True)
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9937a4f8d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building target platforms: x86_64
Building for target x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1i1Uxq
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1i1Uxq
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bedops-2.4.26
+ rm -rf bedops-2.4.26
+ /usr/bin/gzip -dc /builddir/build/SOURCES/bedops-2.4.26.tar.gz
+ /usr/bin/gzip -dc /builddir/build/SOURCES/bedops-2.4.26.tar.gz
+ /usr/bin/tar -xf -
+ /usr/bin/tar -xf -
+ STATUS=0
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ '[' 0 -ne 0 ']'
+ cd bedops-2.4.26
+ cd bedops-2.4.26
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (bedops-syslibs.patch):
Patch #2 (bedops-syslibs.patch):
+ echo 'Patch #2 (bedops-syslibs.patch):'
+ echo 'Patch #2 (bedops-syslibs.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/bedops-syslibs.patch
+ /usr/bin/cat /builddir/build/SOURCES/bedops-syslibs.patch
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/patch -p1 --fuzz=0
patching file applications/bed/bedops/src/Makefile
patching file applications/bed/bedops/src/Makefile
patching file interfaces/src/data/starch/starchFileHelpers.c
patching file interfaces/src/data/starch/starchFileHelpers.c
patching file applications/bed/bedextract/src/Makefile
patching file applications/bed/bedextract/src/Makefile
patching file applications/bed/bedmap/src/Makefile
patching file applications/bed/bedmap/src/Makefile
patching file system.mk/Makefile.linux
patching file system.mk/Makefile.linux
patching file applications/bed/closestfeats/src/Makefile
patching file applications/bed/closestfeats/src/Makefile
patching file applications/bed/conversion/src/Makefile
patching file applications/bed/conversion/src/Makefile
patching file applications/bed/sort-bed/src/Makefile
patching file applications/bed/sort-bed/src/Makefile
patching file applications/bed/starch/src/Makefile
patching file applications/bed/starch/src/Makefile
patching file applications/bed/starch/src/starchcat.c
patching file applications/bed/starch/src/starchcat.c
patching file docs/conf.py
patching file docs/conf.py
+ rm -r third-party/bzip2-1.0.6.tar.bz2 third-party/jansson-2.6.tar.bz2
+ rm -r third-party/bzip2-1.0.6.tar.bz2 third-party/jansson-2.6.tar.bz2
+ exit 0
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YBC5YF
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YBC5YF
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bedops-2.4.26
+ cd bedops-2.4.26
+ make JPARALLEL=
+ make JPARALLEL=
make  -f system.mk/Makefile.linux
make  -f system.mk/Makefile.linux
make[1]: Entering directory `/builddir/build/BUILD/bedops-2.4.26'
make[1]: Entering directory `/builddir/build/BUILD/bedops-2.4.26'
#bzcat  | tar -x -C third-party
#bzcat  | tar -x -C third-party
#cd third-party/jansson-2.6 && ./configure --prefix=/builddir/build/BUILD/bedops-2.4.26/third-party/jansson-2.6 && make && make install && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f jansson && ln -sf jansson-2.6 third-party/jansson
#cd third-party/jansson-2.6 && ./configure --prefix=/builddir/build/BUILD/bedops-2.4.26/third-party/jansson-2.6 && make && make install && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f jansson && ln -sf jansson-2.6 third-party/jansson
#bzcat  | tar -x -C third-party
#bzcat  | tar -x -C third-party
#cd third-party/bzip2-1.0.6 && make libbz2.a && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2
#cd third-party/bzip2-1.0.6 && make libbz2.a && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2
#bzcat  | tar -x -C third-party
#bzcat  | tar -x -C third-party
#cd third-party/zlib-1.2.7 && ./configure --static && make && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib
#cd third-party/zlib-1.2.7 && ./configure --static && make && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib
make build -f /builddir/build/BUILD/bedops-2.4.26/system.mk/Makefile.linux
make build -f /builddir/build/BUILD/bedops-2.4.26/system.mk/Makefile.linux
make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.26'
make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.26'
make -C applications/bed/bedmap/src -f Makefile build
make -C applications/bed/bedmap/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src'
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && g++ -o ../bin/bedmap  -s -Wall -pedantic -O3 -std=c++11  objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp
mkdir -p ../bin && g++ -o ../bin/bedmap  -s -Wall -pedantic -O3 -std=c++11  objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src'
make -C applications/bed/sort-bed/src -f Makefile build
make -C applications/bed/sort-bed/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src'
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects/SortDetails.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects/SortDetails.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects/Sort.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects/Sort.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects/CheckSort.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects/CheckSort.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && g++ -o ../bin/sort-bed  -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11  -iquote../../../../interfaces/general-headers objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o objects/SortDetails.o objects/Sort.o objects/CheckSort.o -ljansson -lz -lbz2
mkdir -p ../bin && g++ -o ../bin/sort-bed  -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11  -iquote../../../../interfaces/general-headers objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o objects/SortDetails.o objects/Sort.o objects/CheckSort.o -ljansson -lz -lbz2
mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm
mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm
mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm
mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm
mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates
mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src'
make -C applications/bed/bedops/src -f Makefile build
make -C applications/bed/bedops/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src'
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && g++ -o ../bin/bedops  -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp
mkdir -p ../bin && g++ -o ../bin/bedops  -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src'
make -C applications/bed/closestfeats/src -f Makefile build
make -C applications/bed/closestfeats/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src'
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && g++ -o ../bin/closest-features  -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp
mkdir -p ../bin && g++ -o ../bin/closest-features  -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src'
make -C applications/bed/bedextract/src -f Makefile build
make -C applications/bed/bedextract/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src'
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && g++ -o ../bin/bedextract  -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp
mkdir -p ../bin && g++ -o ../bin/bedextract  -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src'
make -C applications/bed/starch/src -f Makefile build
make -C applications/bed/starch/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src'
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
mkdir -p objects
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p ../lib
mkdir -p ../lib
ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o
ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o
mkdir -p ../bin
mkdir -p ../bin
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/starch.o -o ../bin/starch ../lib/libstarch.a -ljansson -lz -lbz2
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/starch.o -o ../bin/starch ../lib/libstarch.a -ljansson -lz -lbz2
mkdir -p ../bin
mkdir -p ../bin
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/unstarch.o -o ../bin/unstarch ../lib/libstarch.a -ljansson -lz -lbz2
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/unstarch.o -o ../bin/unstarch ../lib/libstarch.a -ljansson -lz -lbz2
mkdir -p ../bin
mkdir -p ../bin
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/starchcat.o -o ../bin/starchcat ../lib/libstarch.a -ljansson -lz -lbz2
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/starchcat.o -o ../bin/starchcat ../lib/libstarch.a -ljansson -lz -lbz2
mkdir -p ../bin
mkdir -p ../bin
cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel
cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel
mkdir -p ../bin
mkdir -p ../bin
cp starchcluster_sge.tcsh ../bin/starchcluster_sge
cp starchcluster_sge.tcsh ../bin/starchcluster_sge
mkdir -p ../bin
mkdir -p ../bin
cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm
cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm
mkdir -p ../bin
mkdir -p ../bin
cp starch-diff.py ../bin/starch-diff
cp starch-diff.py ../bin/starch-diff
mkdir -p ../bin
mkdir -p ../bin
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../..
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/starchstrip.o -o ../bin/starchstrip ../lib/libstarch.a -ljansson -lz -lbz2
g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s objects/starchstrip.o -o ../bin/starchstrip ../lib/libstarch.a -ljansson -lz -lbz2
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src'
make -C applications/bed/conversion/src -f Makefile build
make -C applications/bed/conversion/src -f Makefile build
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src'
make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src'
mkdir -p ../bin && gcc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -O3  -iquote"/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src" convert2bed.c -o ../bin/convert2bed -lpthread
mkdir -p ../bin && gcc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -O3  -iquote"/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src" convert2bed.c -o ../bin/convert2bed -lpthread
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src'
make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src'
make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26'
make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26'
make[1]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26'
make[1]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26'
+ exit 0
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VHDA1B
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VHDA1B
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 '!=' / ']'
+ '[' /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
+ rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
+ mkdir /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
+ cd bedops-2.4.26
+ cd bedops-2.4.26
+ make install BINDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin
+ make install BINDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin
mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin
mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin
cp applications/bed/conversion/src/wrappers/bam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed
cp applications/bed/conversion/src/wrappers/bam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed
cp applications/bed/conversion/src/wrappers/gff2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2bed
cp applications/bed/conversion/src/wrappers/gff2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2bed
cp applications/bed/conversion/src/wrappers/gtf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2bed
cp applications/bed/conversion/src/wrappers/gtf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2bed
cp applications/bed/conversion/src/wrappers/gvf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2bed
cp applications/bed/conversion/src/wrappers/gvf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2bed
cp applications/bed/conversion/src/wrappers/psl2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2bed
cp applications/bed/conversion/src/wrappers/psl2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2bed
cp applications/bed/conversion/src/wrappers/rmsk2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2bed
cp applications/bed/conversion/src/wrappers/rmsk2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2bed
cp applications/bed/conversion/src/wrappers/sam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2bed
cp applications/bed/conversion/src/wrappers/sam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2bed
cp applications/bed/conversion/src/wrappers/vcf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2bed
cp applications/bed/conversion/src/wrappers/vcf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2bed
cp applications/bed/conversion/src/wrappers/wig2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2bed
cp applications/bed/conversion/src/wrappers/wig2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2bed
cp applications/bed/conversion/src/wrappers/bam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch
cp applications/bed/conversion/src/wrappers/bam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch
cp applications/bed/conversion/src/wrappers/gff2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2starch
cp applications/bed/conversion/src/wrappers/gff2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2starch
cp applications/bed/conversion/src/wrappers/gtf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2starch
cp applications/bed/conversion/src/wrappers/gtf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2starch
cp applications/bed/conversion/src/wrappers/gvf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2starch
cp applications/bed/conversion/src/wrappers/gvf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2starch
cp applications/bed/conversion/src/wrappers/psl2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2starch
cp applications/bed/conversion/src/wrappers/psl2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2starch
cp applications/bed/conversion/src/wrappers/rmsk2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2starch
cp applications/bed/conversion/src/wrappers/rmsk2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2starch
cp applications/bed/conversion/src/wrappers/sam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2starch
cp applications/bed/conversion/src/wrappers/sam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2starch
cp applications/bed/conversion/src/wrappers/vcf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2starch
cp applications/bed/conversion/src/wrappers/vcf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2starch
cp applications/bed/conversion/src/wrappers/wig2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2starch
cp applications/bed/conversion/src/wrappers/wig2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2starch
cp applications/bed/conversion/src/wrappers/bam2bed_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_sge
cp applications/bed/conversion/src/wrappers/bam2bed_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_sge
cp applications/bed/conversion/src/wrappers/bam2bed_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_slurm
cp applications/bed/conversion/src/wrappers/bam2bed_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_slurm
cp applications/bed/conversion/src/wrappers/bam2bed_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_gnuParallel
cp applications/bed/conversion/src/wrappers/bam2bed_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_gnuParallel
cp applications/bed/conversion/src/wrappers/bam2starch_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_sge
cp applications/bed/conversion/src/wrappers/bam2starch_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_sge
cp applications/bed/conversion/src/wrappers/bam2starch_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_slurm
cp applications/bed/conversion/src/wrappers/bam2starch_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_slurm
cp applications/bed/conversion/src/wrappers/bam2starch_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_gnuParallel
cp applications/bed/conversion/src/wrappers/bam2starch_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_gnuParallel
cp applications/bed/starch/bin/starchcluster_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcluster_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcluster_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcluster_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcluster_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcluster_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starch-diff /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starch-diff /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/sort-bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/sort-bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/update-sort-bed-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/update-sort-bed-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/update-sort-bed-starch-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/update-sort-bed-starch-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/update-sort-bed-migrate-candidates /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/sort-bed/bin/update-sort-bed-migrate-candidates /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/bedops/bin/bedops /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/bedops/bin/bedops /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/closestfeats/bin/closest-features /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/closestfeats/bin/closest-features /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/bedmap/bin/bedmap /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/bedmap/bin/bedmap /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/bedextract/bin/bedextract /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/bedextract/bin/bedextract /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/unstarch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/unstarch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcat /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchcat /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchstrip /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/starch/bin/starchstrip /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/conversion/bin/convert2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
cp applications/bed/conversion/bin/convert2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bedops-2.4.26
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bedops-2.4.26
extracting debug info from /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/convert2bed
extracting debug info from /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/convert2bed
dwz: Too few files for multifile optimization
dwz: Too few files for multifile optimization
/usr/lib/rpm/sepdebugcrcfix: Updated 0 CRC32s, 1 CRC32s did match.
/usr/lib/rpm/sepdebugcrcfix: Updated 0 CRC32s, 1 CRC32s did match.
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Processing files: bedops-2.4.26-1.el7.centos.x86_64
Processing files: bedops-2.4.26-1.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uhoRHy
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uhoRHy
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bedops-2.4.26
+ cd bedops-2.4.26
+ DOCDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26
+ DOCDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26
+ export DOCDIR
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26
+ cp -pr docs/Makefile docs/_static docs/assets docs/conf.py docs/content docs/index.rst docs/requirements.txt /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26
+ cp -pr docs/Makefile docs/_static docs/assets docs/conf.py docs/content docs/index.rst docs/requirements.txt /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26
+ exit 0
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Tdczvv
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Tdczvv
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bedops-2.4.26
+ cd bedops-2.4.26
+ LICENSEDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26
+ LICENSEDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26
+ export LICENSEDIR
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26
+ cp -pr LICENSE /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26
+ cp -pr LICENSE /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26
+ exit 0
+ exit 0
Finding  Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u "
Finding  Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u "
Finding  Requires(interp): 
Finding  Requires(interp): 
Finding  Requires(rpmlib): 
Finding  Requires(rpmlib): 
Finding  Requires(verify): 
Finding  Requires(verify): 
Finding  Requires(pre): 
Finding  Requires(pre): 
Finding  Requires(post): 
Finding  Requires(post): 
Finding  Requires(preun): 
Finding  Requires(preun): 
Finding  Requires(postun): 
Finding  Requires(postun): 
Finding  Requires(pretrans): 
Finding  Requires(pretrans): 
Finding  Requires(posttrans): 
Finding  Requires(posttrans): 
Finding  Requires: /bin/sh -c "  while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u  | /usr/bin/sed -e '/\/usr\/bin\/Rscript/d'"
Finding  Requires: /bin/sh -c "  while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u  | /usr/bin/sed -e '/\/usr\/bin\/Rscript/d'"
Provides: bedops = 2.4.26-1.el7.centos bedops(x86-64) = 2.4.26-1.el7.centos
Provides: bedops = 2.4.26-1.el7.centos bedops(x86-64) = 2.4.26-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires: /bin/bash /bin/tcsh libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libjansson.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) /opt/local/bin/Rscript rtld(GNU_HASH) /usr/bin/env
Requires: /bin/bash /bin/tcsh libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libjansson.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) /opt/local/bin/Rscript rtld(GNU_HASH) /usr/bin/env
Processing files: bedops-debuginfo-2.4.26-1.el7.centos.x86_64
Processing files: bedops-debuginfo-2.4.26-1.el7.centos.x86_64
Provides: bedops-debuginfo = 2.4.26-1.el7.centos bedops-debuginfo(x86-64) = 2.4.26-1.el7.centos
Provides: bedops-debuginfo = 2.4.26-1.el7.centos bedops-debuginfo(x86-64) = 2.4.26-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
warning: Could not canonicalize hostname: copr-builder-249271573.novalocal
warning: Could not canonicalize hostname: copr-builder-249271573.novalocal
Wrote: /builddir/build/RPMS/bedops-2.4.26-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/bedops-2.4.26-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/bedops-debuginfo-2.4.26-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/bedops-debuginfo-2.4.26-1.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.WfALqd
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.WfALqd
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd bedops-2.4.26
+ cd bedops-2.4.26
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64
+ exit 0
+ exit 0
Child return code was: 0
Child return code was: 0