Mock Version: 1.4.15
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/benchmark-mini-apps.spec'], chrootPath='/var/lib/mock/910056-epel-7-x86_64-1558049876.847831/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f92a1f5c978>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1c4lr9_:/etc/resolv.conf']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1c4lr9_:/etc/resolv.conf']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '39eb77734916410c9e12ec3519fe0e3c', '-D', '/var/lib/mock/910056-epel-7-x86_64-1558049876.847831/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1c4lr9_:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/benchmark-mini-apps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/benchmark-mini-apps-1-1.el7.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/benchmark-mini-apps.spec'], chrootPath='/var/lib/mock/910056-epel-7-x86_64-1558049876.847831/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f92a1f5c978>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1c4lr9_:/etc/resolv.conf']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1c4lr9_:/etc/resolv.conf']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'fee364ed48264ea8a953df2570d4d1ea', '-D', '/var/lib/mock/910056-epel-7-x86_64-1558049876.847831/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1c4lr9_:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/benchmark-mini-apps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dgfxQC
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf benchmark-mini-apps-1
+ /usr/bin/mkdir -p benchmark-mini-apps-1
+ cd benchmark-mini-apps-1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/MiniDFT-1.1.1.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ tar fx /builddir/build/SOURCES/MiniDFT-1.1.1.tar.gz
+ tar fx /builddir/build/SOURCES/SNAP-9914e82.tar.gz
+ tar fx /builddir/build/SOURCES/miniMD-ce5e74c.tar.gz
+ cp miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref/LICENSE LICENSE.miniMD
+ cp MiniDFT-MiniDFT-1.1.1/License License.MiniDFT
+ cp SNAP-9914e82aabd39b2c1e47c48ea719c848970decde/README.md README.SNAP
+ cp miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/README.md README.miniMD
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.frLoPz
+ umask 022
+ cd /builddir/build/BUILD
+ cd benchmark-mini-apps-1
+ . /etc/profile.d/modules.sh
BUILDSTDERR: ++++ /bin/ps -p 45 -ocomm=
BUILDSTDERR: +++ /bin/basename sh
BUILDSTDERR: ++ shell=sh
BUILDSTDERR: ++ '[' -f /usr/share/Modules/init/sh ']'
BUILDSTDERR: ++ . /usr/share/Modules/init/sh
BUILDSTDERR: +++ MODULESHOME=/usr/share/Modules
BUILDSTDERR: +++ export MODULESHOME
BUILDSTDERR: +++ '[' '' = '' ']'
BUILDSTDERR: +++ LOADEDMODULES=
BUILDSTDERR: +++ export LOADEDMODULES
BUILDSTDERR: +++ '[' /usr/share/Modules/modulefiles:/etc/modulefiles = '' ']'
+ module load mpi/openmpi-x86_64
BUILDSTDERR: ++ /usr/bin/modulecmd sh load mpi/openmpi-x86_64
+ eval LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/openmpi-x86_64' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/openmpi/bin' ';export' 'MPI_BIN;MPI_COMPILER=openmpi-x86_64' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-x86_64' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/openmpi' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/openmpi-x86_64' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/openmpi/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/openmpi-x86_64' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_openmpi' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/openmpi-x86_64' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin' ';export' 'PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64' ';export' '_LMFILES_;'
BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export LD_LIBRARY_PATH
BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-x86_64
BUILDSTDERR: ++ export LOADEDMODULES
BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin
BUILDSTDERR: ++ export MPI_BIN
BUILDSTDERR: ++ MPI_COMPILER=openmpi-x86_64
BUILDSTDERR: ++ export MPI_COMPILER
BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-x86_64
BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi
BUILDSTDERR: ++ export MPI_HOME
BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-x86_64
BUILDSTDERR: ++ export MPI_INCLUDE
BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export MPI_LIB
BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-x86_64
BUILDSTDERR: ++ export MPI_MAN
BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ MPI_SUFFIX=_openmpi
BUILDSTDERR: ++ export MPI_SUFFIX
BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-x86_64
BUILDSTDERR: ++ export MPI_SYSCONFIG
BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export PYTHONPATH
BUILDSTDERR: ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64
BUILDSTDERR: ++ export _LMFILES_
+ export 'CFLAGS= -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ CFLAGS=' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ cd MiniDFT-MiniDFT-1.1.1
+ LDFLAGS=-Wl,-z,relro
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules -O3 -ffast-math'
+ make -C src -f /builddir/build/SOURCES/minidft-makefile
make: Entering directory `/builddir/build/BUILD/benchmark-mini-apps-1/MiniDFT-MiniDFT-1.1.1/src'
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c kind.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c constants.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c radial_grids.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c atom.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c io_global.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c parallel_include.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c mp.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c mp_global.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c parser.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c parameters.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c input_parameters.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c io_files.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c control_flags.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c cell_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c check_stop.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c clocks.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c fft_types.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c fft_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c random_numbers.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c ions_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c descriptors.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c electrons_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c version.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c environment.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c error_handler.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c fft_scalar.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c fft_custom.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c recvec.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c pwcom.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c stick_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c stick_set.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c data_structure_custom.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c fft_parallel.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c fft_interfaces.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c wrappers.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c funct.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c griddim.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c image_io_routines.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c allocate_fft_custom.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c ruotaijk.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c xk_wk_collect.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c mp_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c mp_wave.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c mp_image_global_module.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c pseudo_types.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c zhpev_drv.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c ptoolkit.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c read_cards.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c read_namelists.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c uspp.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c upf_nml.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c upf.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c upf_to_internal.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c read_pseudo.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c recvec_subs.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c run_info.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c set_signal.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c splinelib.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c wavefunctions.f90
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o c_mkdir.o c_mkdir.c
BUILDSTDERR: c_mkdir.c: In function 'c_mkdir_safe':
BUILDSTDERR: c_mkdir.c:73:8: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:     int i, retval = -1 ;
BUILDSTDERR:         ^
BUILDSTDERR: c_mkdir.c: In function 'c_chdir_int_':
BUILDSTDERR: c_mkdir.c:98:4: warning: implicit declaration of function 'chdir' [-Wimplicit-function-declaration]
BUILDSTDERR:     retval = chdir( ldir ) ;
BUILDSTDERR:     ^
BUILDSTDERR: c_mkdir.c: In function 'c_link_int_':
BUILDSTDERR: c_mkdir.c:163:4: warning: implicit declaration of function 'symlink' [-Wimplicit-function-declaration]
BUILDSTDERR:     retval = symlink( oldname_, newname_ ) ;
BUILDSTDERR:     ^
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o cptimer.o cptimer.c
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o customize_signals.o customize_signals.c
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o eval_infix.o eval_infix.c
BUILDSTDERR: eval_infix.c: In function 'EvalInfix':
BUILDSTDERR: eval_infix.c:473:9: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:      int i = 0;
BUILDSTDERR:          ^
BUILDSTDERR: eval_infix.c:654:21: warning: 'right' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              push_val( -1 * right, strError );
BUILDSTDERR:                      ^
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o fft_stick.o fft_stick.c
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o md5.o md5.c
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o md5_from_file.o md5_from_file.c
BUILDSTDERR: md5_from_file.c: In function 'get_md5':
BUILDSTDERR: md5_from_file.c:104:6: warning: statement with no effect [-Wunused-value]
BUILDSTDERR:       for(i;i<16;i++){
BUILDSTDERR:       ^
BUILDSTDERR: md5_from_file.c: In function 'readFile':
BUILDSTDERR: md5_from_file.c:67:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:   fread(out, fileLen, 1, file);
BUILDSTDERR:        ^
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o memstat.o memstat.c
mpicc  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -O3  -D__FFTW3 -D__MPI -D__SCALAPACK   -c -o stack.o stack.c
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c atomic_number.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c capital.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c cryst_to_car.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c date_and_tim.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c distools.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c erf.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c find_free_unit.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c flush_unit.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c functionals.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c inpfile.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c int_to_char.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c invmat.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c latgen.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c lsda_functionals.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c matches.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c recips.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c remove_tot_torque.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c rgen.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c simpsn.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c sort.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c sph_bes.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c trimcheck.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c volume.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c ylmr2.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c symm_base.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c start_k.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c scf_mod.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c a2fmod.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c buffers.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c becmod.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c add_vuspsi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c allocate_fft.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c allocate_locpot.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c allocate_nlpot.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c allocate_wfc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c atomic_rho.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c atomic_wfc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c g_psi_mod.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c c_bands.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c ccgdiagg.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c cdiaghg.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c cegterg.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c symme.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c close_files.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c coset.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c data_structure.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c deriv_drhoc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c divide.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c divide_et_impera.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c drhoc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c dvloc_of_g.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c compute_deff.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c newd.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c coulomb_vcut.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c exx.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c clean_pw.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c input.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c electrons.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c eqvect.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c ewald.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c g2_kin.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c g_psi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c gk_sort.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c gradcorr.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c h_1psi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c h_psi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c hinit0.f90
BUILDSTDERR: hinit0.f90:59:0: warning: extra tokens at end of #endif directive [enabled by default]
BUILDSTDERR:  #endif __IGKIO
BUILDSTDERR:  ^
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c init_at_1.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c openfil.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c init_run.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c init_us_1.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c init_us_2.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c init_vloc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c interpolate.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c irrek.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c iweights.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c kpoint_grid.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c lchk_tauxk.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c memory_report.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c mix_rho.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c multable.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c n_plane_waves.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c para.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c potinit.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c print_clock_pw.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c print_ks_energies.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c read_input.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c pwscf.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c remove_atomic_rho.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c rotate_wfc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c rotate_wfc_k.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c s_1psi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c s_psi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c set_kup_and_kdw.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c set_rhoc.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c set_vrs.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c setlocal.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c setup.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c stop_run.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c struct_fact.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c sum_band.f90
BUILDSTDERR: sum_band.f90:214:0: warning: extra tokens at end of #endif directive [enabled by default]
BUILDSTDERR:  #endif __IGKIO
BUILDSTDERR:  ^
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c summary.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c usnldiag.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c v_of_rho.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c vloc_of_g.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c vloc_psi.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c weights.f90
mpifort -cpp -fopenmp   -D__FFTW3 -D__MPI -D__SCALAPACK -c wfcinit.f90
mpifort -fopenmp -o mini_dft kind.o constants.o radial_grids.o atom.o io_global.o parallel_include.o mp.o mp_global.o parser.o parameters.o input_parameters.o io_files.o control_flags.o cell_base.o check_stop.o clocks.o fft_types.o fft_base.o random_numbers.o ions_base.o descriptors.o electrons_base.o version.o environment.o error_handler.o fft_scalar.o fft_custom.o recvec.o pwcom.o stick_base.o stick_set.o data_structure_custom.o fft_parallel.o fft_interfaces.o wrappers.o funct.o griddim.o image_io_routines.o allocate_fft_custom.o ruotaijk.o xk_wk_collect.o mp_base.o mp_wave.o mp_image_global_module.o pseudo_types.o zhpev_drv.o ptoolkit.o read_cards.o read_namelists.o uspp.o upf_nml.o upf.o upf_to_internal.o read_pseudo.o recvec_subs.o run_info.o set_signal.o splinelib.o wavefunctions.o c_mkdir.o cptimer.o customize_signals.o eval_infix.o fft_stick.o md5.o md5_from_file.o memstat.o stack.o atomic_number.o capital.o cryst_to_car.o date_and_tim.o distools.o erf.o find_free_unit.o flush_unit.o functionals.o inpfile.o int_to_char.o invmat.o latgen.o lsda_functionals.o matches.o recips.o remove_tot_torque.o rgen.o simpsn.o sort.o sph_bes.o trimcheck.o volume.o ylmr2.o symm_base.o start_k.o scf_mod.o a2fmod.o buffers.o becmod.o add_vuspsi.o allocate_fft.o allocate_locpot.o allocate_nlpot.o allocate_wfc.o atomic_rho.o atomic_wfc.o g_psi_mod.o c_bands.o ccgdiagg.o cdiaghg.o cegterg.o symme.o close_files.o coset.o data_structure.o deriv_drhoc.o divide.o divide_et_impera.o drhoc.o dvloc_of_g.o compute_deff.o newd.o coulomb_vcut.o exx.o clean_pw.o input.o electrons.o eqvect.o ewald.o g2_kin.o g_psi.o gk_sort.o gradcorr.o h_1psi.o h_psi.o hinit0.o init_at_1.o openfil.o init_run.o init_us_1.o init_us_2.o init_vloc.o interpolate.o irrek.o iweights.o kpoint_grid.o lchk_tauxk.o memory_report.o mix_rho.o multable.o n_plane_waves.o para.o potinit.o print_clock_pw.o print_ks_energies.o read_input.o pwscf.o remove_atomic_rho.o rotate_wfc.o rotate_wfc_k.o s_1psi.o s_psi.o set_kup_and_kdw.o set_rhoc.o set_vrs.o setlocal.o setup.o stop_run.o struct_fact.o sum_band.o summary.o usnldiag.o v_of_rho.o vloc_of_g.o vloc_psi.o weights.o wfcinit.o  -lfftw3_omp -lfftw3 -lscalapack -lopenblaso  
rm -f mini_dft.hpcstruct
make: Leaving directory `/builddir/build/BUILD/benchmark-mini-apps-1/MiniDFT-MiniDFT-1.1.1/src'
+ cd -
/builddir/build/BUILD/benchmark-mini-apps-1
+ cd SNAP-9914e82aabd39b2c1e47c48ea719c848970decde
+ /usr/bin/make -j2 -C src 'FFLAGS=-O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic' FFLAG2=-fopenmp
make: Entering directory `/builddir/build/BUILD/benchmark-mini-apps-1/SNAP-9914e82aabd39b2c1e47c48ea719c848970decde/src'
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c global.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c sn.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c data.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c geom.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c control.f90
cpp -P -DMPI -DOPENMP time.F90 >time.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c version.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c time.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c expxs.f90
cpp -P -DMPI -DOPENMP plib.F90 >plib.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c plib.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c mms.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c solvar.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c thrd_comm.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c dim1_sweep.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c dim3_sweep.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c mkba_sweep.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c analyze.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c dealloc.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c utils.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c input.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c setup.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c output.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c snap_main.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c octsweep.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c sweep.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c inner.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c outer.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -c translv.f90
mpif90 -O3 -funroll-loops -ffast-math -g -fno-backtrace -rdynamic -fopenmp -o gsnap global.o snap_main.o utils.o version.o plib.o geom.o sn.o data.o control.o input.o setup.o dealloc.o translv.o solvar.o outer.o expxs.o inner.o sweep.o octsweep.o dim1_sweep.o dim3_sweep.o output.o time.o mms.o analyze.o thrd_comm.o mkba_sweep.o
make: Leaving directory `/builddir/build/BUILD/benchmark-mini-apps-1/SNAP-9914e82aabd39b2c1e47c48ea719c848970decde/src'
+ cd -
/builddir/build/BUILD/benchmark-mini-apps-1
+ /usr/bin/make -j2 -C miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref openmpi AVX=no
make: Entering directory `/builddir/build/BUILD/benchmark-mini-apps-1/miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref'
make[1]: Entering directory `/builddir/build/BUILD/benchmark-mini-apps-1/miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref/Obj_openmpi'
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E ljs.cpp > ljs.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E input.cpp > input.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c input.2.cpp -o input.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c ljs.2.cpp -o ljs.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E integrate.cpp > integrate.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c integrate.2.cpp -o integrate.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E atom.cpp > atom.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E force_lj.cpp > force_lj.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c force_lj.2.cpp -o force_lj.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c atom.2.cpp -o atom.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E force_eam.cpp > force_eam.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c force_eam.2.cpp -o force_eam.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E neighbor.cpp > neighbor.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c neighbor.2.cpp -o neighbor.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E thermo.cpp > thermo.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c thermo.2.cpp -o thermo.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E comm.cpp > comm.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c comm.2.cpp -o comm.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E timer.cpp > timer.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c timer.2.cpp -o timer.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E output.cpp > output.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -E setup.cpp > setup.2.cpp
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c output.2.cpp -o output.o
mpicxx -O3 -DMPICH_IGNORE_CXX_SEEK -fopenmp -DNOCHUNK -DUSE_SIMD -DPRECISION=2 -c setup.2.cpp -o setup.o
mpicxx  -O3 -fopenmp -DPRECISION=2 ljs.o input.o integrate.o atom.o force_lj.o force_eam.o neighbor.o thermo.o comm.o timer.o output.o setup.o   -o ../miniMD_openmpi
size ../miniMD_openmpi
   text	   data	    bss	    dec	    hex	filename
 151057	   2412	  10112	 163581	  27efd	../miniMD_openmpi
make[1]: Leaving directory `/builddir/build/BUILD/benchmark-mini-apps-1/miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref/Obj_openmpi'
make: Leaving directory `/builddir/build/BUILD/benchmark-mini-apps-1/miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref'
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.N98lw3
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64
+ cd benchmark-mini-apps-1
+ . /etc/profile.d/modules.sh
BUILDSTDERR: ++++ /bin/ps -p 989 -ocomm=
BUILDSTDERR: +++ /bin/basename sh
BUILDSTDERR: ++ shell=sh
BUILDSTDERR: ++ '[' -f /usr/share/Modules/init/sh ']'
BUILDSTDERR: ++ . /usr/share/Modules/init/sh
BUILDSTDERR: +++ MODULESHOME=/usr/share/Modules
BUILDSTDERR: +++ export MODULESHOME
BUILDSTDERR: +++ '[' '' = '' ']'
BUILDSTDERR: +++ LOADEDMODULES=
BUILDSTDERR: +++ export LOADEDMODULES
BUILDSTDERR: +++ '[' /usr/share/Modules/modulefiles:/etc/modulefiles = '' ']'
+ module load mpi/openmpi-x86_64
BUILDSTDERR: ++ /usr/bin/modulecmd sh load mpi/openmpi-x86_64
+ eval LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/openmpi-x86_64' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/openmpi/bin' ';export' 'MPI_BIN;MPI_COMPILER=openmpi-x86_64' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-x86_64' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/openmpi' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/openmpi-x86_64' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/openmpi/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/openmpi-x86_64' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_openmpi' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/openmpi-x86_64' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin' ';export' 'PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64' ';export' '_LMFILES_;'
BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export LD_LIBRARY_PATH
BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-x86_64
BUILDSTDERR: ++ export LOADEDMODULES
BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin
BUILDSTDERR: ++ export MPI_BIN
BUILDSTDERR: ++ MPI_COMPILER=openmpi-x86_64
BUILDSTDERR: ++ export MPI_COMPILER
BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-x86_64
BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi
BUILDSTDERR: ++ export MPI_HOME
BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-x86_64
BUILDSTDERR: ++ export MPI_INCLUDE
BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export MPI_LIB
BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-x86_64
BUILDSTDERR: ++ export MPI_MAN
BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ MPI_SUFFIX=_openmpi
BUILDSTDERR: ++ export MPI_SUFFIX
BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-x86_64
BUILDSTDERR: ++ export MPI_SYSCONFIG
BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export PYTHONPATH
BUILDSTDERR: ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64
BUILDSTDERR: ++ export _LMFILES_
+ export 'CFLAGS= -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ CFLAGS=' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ install -D -m755 MiniDFT-MiniDFT-1.1.1/src/mini_dft /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/lib64/openmpi/bin/mini_dft
+ install -D -m755 miniMD-ce5e74c2560c86742cdb74153580ecad7f7dd3ba/ref/miniMD_openmpi /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/lib64/openmpi/bin/miniMD
+ install -D -m755 SNAP-9914e82aabd39b2c1e47c48ea719c848970decde/src/gsnap /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/lib64/openmpi/bin/gsnap
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/benchmark-mini-apps-1
extracting debug info from /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/lib64/openmpi/bin/gsnap
extracting debug info from /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/lib64/openmpi/bin/miniMD
extracting debug info from /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/lib64/openmpi/bin/mini_dft
BUILDSTDERR: dwz: .dwz/benchmark-mini-apps-1-1.el7.x86_64: .debug_info section not present
/usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 1 CRC32s did match.
BUILDSTDERR: cpio: benchmark-mini-apps-1/SNAP-9914e82aabd39b2c1e47c48ea719c848970decde/src/omp_lib.h: Cannot stat: No such file or directory
BUILDSTDERR: cpio: gcc-4.8.5-20150702/libgcc/config/i386/crtfastmath.c: Cannot stat: No such file or directory
BUILDSTDERR: cpio: gcc-4.8.5-20150702/obj-x86_64-redhat-linux/x86_64-redhat-linux/libgcc: Cannot stat: No such file or directory
BUILDSTDERR: 671 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Processing files: benchmark-mini-apps-openmpi-1-1.el7.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RAgacz
+ umask 022
+ cd /builddir/build/BUILD
+ cd benchmark-mini-apps-1
+ DOCDIR=/builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/doc/benchmark-mini-apps-openmpi-1
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/doc/benchmark-mini-apps-openmpi-1
+ cp -pr README.SNAP /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/doc/benchmark-mini-apps-openmpi-1
+ cp -pr MiniDFT-MiniDFT-1.1.1/README.APEX /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/doc/benchmark-mini-apps-openmpi-1
+ cp -pr README.miniMD /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/doc/benchmark-mini-apps-openmpi-1
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9PU7T4
+ umask 022
+ cd /builddir/build/BUILD
+ cd benchmark-mini-apps-1
+ LICENSEDIR=/builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/licenses/benchmark-mini-apps-openmpi-1
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/licenses/benchmark-mini-apps-openmpi-1
+ cp -pr LICENSE.miniMD /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/licenses/benchmark-mini-apps-openmpi-1
+ cp -pr License.MiniDFT /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64/usr/share/licenses/benchmark-mini-apps-openmpi-1
+ exit 0
Provides: benchmark-mini-apps-openmpi = 1-1.el7 benchmark-mini-apps-openmpi(x86-64) = 1-1.el7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libfftw3_omp.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgfortran.so.3()(64bit) libgfortran.so.3(GFORTRAN_1.0)(64bit) libgfortran.so.3(GFORTRAN_1.4)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmpi.so.12()(64bit) libmpi_cxx.so.1()(64bit) libmpi_mpifh.so.12()(64bit) libmpi_usempi.so.5()(64bit) libopenblaso.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libquadmath.so.0()(64bit) libscalapack.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH)
Processing files: benchmark-mini-apps-debuginfo-1-1.el7.x86_64
Provides: benchmark-mini-apps-debuginfo = 1-1.el7 benchmark-mini-apps-debuginfo(x86-64) = 1-1.el7
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64
Wrote: /builddir/build/RPMS/benchmark-mini-apps-openmpi-1-1.el7.x86_64.rpm
Wrote: /builddir/build/RPMS/benchmark-mini-apps-debuginfo-1-1.el7.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.rG7gCF
+ umask 022
+ cd /builddir/build/BUILD
+ cd benchmark-mini-apps-1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/benchmark-mini-apps-1-1.el7.x86_64
+ exit 0
Child return code was: 0