Warning: Permanently added '18.212.42.12' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10356283-fedora-43-aarch64 --chroot fedora-43-aarch64 Version: 1.8 PID: 12685 Logging PID: 12687 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10356283, 'buildroot_pkgs': [], 'chroot': 'fedora-43-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7f53bb9fbd29a4d687eeab63b700e4a69b077902', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'freesurfer', 'package_version': '8.2.0-7', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-43-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '10356283-fedora-43-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer', '/var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer'... Running: git checkout 7f53bb9fbd29a4d687eeab63b700e4a69b077902 -- cmd: ['git', 'checkout', '7f53bb9fbd29a4d687eeab63b700e4a69b077902', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer rc: 0 stdout: stderr: Note: switching to '7f53bb9fbd29a4d687eeab63b700e4a69b077902'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7f53bb9 automatic import of freesurfer Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading freesurfer-8.2.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o freesurfer-8.2.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/freesurfer/freesurfer-8.2.0.tar.gz/md5/46be514b2e435f456fded3fde94e2aaa/freesurfer-8.2.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 389M 100 389M 0 0 16.3M 0 0:00:23 0:00:23 --:--:-- 15.8M INFO: Reading stdout from command: md5sum freesurfer-8.2.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer/freesurfer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1776874811.726303 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.2, NVR = mock-6.7-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer/freesurfer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1776874811.726303 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer/freesurfer.spec) Config(fedora-43-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1776874811.726303/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:43 INFO: Pulling image: registry.fedoraproject.org/fedora:43 INFO: Tagging container image as mock-bootstrap-6c9ad732-1ed7-4db0-97bc-ed1e51ecba5c INFO: Checking that aa844a78a29dc925c3fb0e1461c488e3633d1cac5e4c2812cf4bdc49d94c1fda image matches host's architecture INFO: Copy content of container aa844a78a29dc925c3fb0e1461c488e3633d1cac5e4c2812cf4bdc49d94c1fda to /var/lib/mock/fedora-43-aarch64-bootstrap-1776874811.726303/root INFO: mounting aa844a78a29dc925c3fb0e1461c488e3633d1cac5e4c2812cf4bdc49d94c1fda with podman image mount INFO: image aa844a78a29dc925c3fb0e1461c488e3633d1cac5e4c2812cf4bdc49d94c1fda as /var/lib/containers/storage/overlay/064f9a339b500818ac04942c3899449b3b2ce4d84139960a49d1c3ffba8822cb/merged INFO: umounting image aa844a78a29dc925c3fb0e1461c488e3633d1cac5e4c2812cf4bdc49d94c1fda (/var/lib/containers/storage/overlay/064f9a339b500818ac04942c3899449b3b2ce4d84139960a49d1c3ffba8822cb/merged) with podman image umount INFO: Removing image mock-bootstrap-6c9ad732-1ed7-4db0-97bc-ed1e51ecba5c INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-1776874811.726303/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.aarch64 rpm-sequoia-1.10.1-1.fc43.aarch64 dnf5-5.2.18.0-2.fc43.aarch64 dnf5-plugins-5.2.18.0-2.fc43.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 104.1 KiB/s | 18.2 KiB | 00m00s updates 100% | 12.7 MiB/s | 10.2 MiB | 00m01s fedora 100% | 26.7 MiB/s | 34.2 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 aarch64 1.0.8-21.fc43 fedora 171.3 KiB coreutils aarch64 9.7-8.fc43 updates 8.2 MiB cpio aarch64 2.15-6.fc43 fedora 1.1 MiB diffutils aarch64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 43-27 updates 20.6 KiB findutils aarch64 1:4.10.0-6.fc43 fedora 1.9 MiB gawk aarch64 5.3.2-2.fc43 fedora 2.6 MiB glibc-minimal-langpack aarch64 2.42-11.fc43 updates 0.0 B grep aarch64 3.12-2.fc43 fedora 1.0 MiB gzip aarch64 1.13-4.fc43 fedora 424.7 KiB info aarch64 7.2-7.fc43 updates 421.6 KiB patch aarch64 2.8-2.fc43 fedora 262.5 KiB redhat-rpm-config noarch 343-11.fc43 fedora 182.9 KiB rpm-build aarch64 6.0.1-1.fc43 updates 599.0 KiB sed aarch64 4.9-5.fc43 fedora 873.2 KiB shadow-utils aarch64 2:4.18.0-3.fc43 fedora 4.4 MiB tar aarch64 2:1.35-6.fc43 fedora 3.0 MiB unzip aarch64 6.0-67.fc43 fedora 470.2 KiB util-linux aarch64 2.41.4-7.fc43 updates 6.8 MiB which aarch64 2.23-3.fc43 fedora 123.4 KiB xz aarch64 1:5.8.1-4.fc43 updates 1.4 MiB Installing dependencies: add-determinism aarch64 0.6.0-3.fc43 updates 2.0 MiB alternatives aarch64 1.33-3.fc43 updates 90.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs aarch64 4.1.4-1.fc43 updates 486.9 KiB binutils aarch64 2.45.1-4.fc43 updates 31.0 MiB build-reproducibility-srpm-macros noarch 0.6.0-3.fc43 updates 735.0 B bzip2-libs aarch64 1.0.8-21.fc43 fedora 72.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-1.2.fc43 updates 2.7 MiB coreutils-common aarch64 9.7-8.fc43 updates 11.3 MiB crypto-policies noarch 20251125-1.git63291f8.fc43 updates 147.1 KiB curl aarch64 8.15.0-6.fc43 updates 457.6 KiB cyrus-sasl-lib aarch64 2.1.28-33.fc43 fedora 2.4 MiB debugedit aarch64 5.2-3.fc43 fedora 317.9 KiB dwz aarch64 0.16-2.fc43 fedora 322.6 KiB ed aarch64 1.22.2-1.fc43 fedora 156.0 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils aarch64 0.194-1.fc43 updates 3.2 MiB elfutils-debuginfod-client aarch64 0.194-1.fc43 updates 144.0 KiB elfutils-default-yama-scope noarch 0.194-1.fc43 updates 1.8 KiB elfutils-libelf aarch64 0.194-1.fc43 updates 1.1 MiB elfutils-libs aarch64 0.194-1.fc43 updates 746.7 KiB fedora-gpg-keys noarch 43-1 fedora 131.2 KiB fedora-release noarch 43-27 updates 0.0 B fedora-release-identity-basic noarch 43-27 updates 631.0 B fedora-repos noarch 43-1 fedora 4.9 KiB file aarch64 5.46-9.fc43 updates 140.2 KiB file-libs aarch64 5.46-9.fc43 updates 11.9 MiB filesystem aarch64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 2-1.fc43 fedora 2.1 KiB gdb-minimal aarch64 17.1-4.fc43 updates 13.4 MiB gdbm-libs aarch64 1:1.23-10.fc43 fedora 233.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc aarch64 2.42-11.fc43 updates 6.3 MiB glibc-common aarch64 2.42-11.fc43 updates 1.3 MiB glibc-gconv-extra aarch64 2.42-11.fc43 updates 18.6 MiB gmp aarch64 1:6.3.0-4.fc43 fedora 657.9 KiB gnat-srpm-macros noarch 7-1.fc43 updates 1.0 KiB gnulib-l10n noarch 20241231-1.fc43 fedora 655.0 KiB gnupg2 aarch64 2.4.9-5.fc43 updates 6.5 MiB gnupg2-dirmngr aarch64 2.4.9-5.fc43 updates 646.4 KiB gnupg2-gpg-agent aarch64 2.4.9-5.fc43 updates 847.3 KiB gnupg2-gpgconf aarch64 2.4.9-5.fc43 updates 321.9 KiB gnupg2-keyboxd aarch64 2.4.9-5.fc43 updates 233.3 KiB gnupg2-verify aarch64 2.4.9-5.fc43 updates 364.4 KiB gnutls aarch64 3.8.12-1.fc43 updates 3.6 MiB go-srpm-macros noarch 3.8.0-1.fc43 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs aarch64 1.6.2-6.fc43 fedora 92.7 KiB jansson aarch64 2.14-3.fc43 fedora 93.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c aarch64 0.18-7.fc43 fedora 138.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-6.fc43 fedora 98.3 KiB krb5-libs aarch64 1.22.2-3.fc43 updates 2.5 MiB libacl aarch64 2.3.2-4.fc43 fedora 68.0 KiB libarchive aarch64 3.8.4-1.fc43 updates 975.3 KiB libassuan aarch64 2.5.7-4.fc43 fedora 215.8 KiB libattr aarch64 2.5.2-6.fc43 fedora 68.5 KiB libblkid aarch64 2.41.4-7.fc43 updates 290.5 KiB libbrotli aarch64 1.2.0-1.fc43 updates 909.5 KiB libcap aarch64 2.76-4.fc43 updates 508.8 KiB libcap-ng aarch64 0.9.3-1.fc43 updates 161.1 KiB libcom_err aarch64 1.47.3-2.fc43 fedora 111.2 KiB libcurl aarch64 8.15.0-6.fc43 updates 915.1 KiB libeconf aarch64 0.7.9-2.fc43 fedora 81.0 KiB libevent aarch64 2.1.12-16.fc43 fedora 1.1 MiB libfdisk aarch64 2.41.4-7.fc43 updates 418.9 KiB libffi aarch64 3.5.2-1.fc43 updates 155.9 KiB libfsverity aarch64 1.6-3.fc43 fedora 68.5 KiB libgcc aarch64 15.2.1-7.fc43 updates 222.2 KiB libgcrypt aarch64 1.11.1-3.fc43 updates 1.2 MiB libgomp aarch64 15.2.1-7.fc43 updates 517.0 KiB libgpg-error aarch64 1.55-2.fc43 fedora 971.3 KiB libidn2 aarch64 2.3.8-2.fc43 fedora 560.6 KiB libksba aarch64 1.6.7-4.fc43 fedora 398.4 KiB liblastlog2 aarch64 2.41.4-7.fc43 updates 138.0 KiB libmount aarch64 2.41.4-7.fc43 updates 420.2 KiB libnghttp2 aarch64 1.66.0-2.fc43 fedora 197.9 KiB libpkgconf aarch64 2.3.0-3.fc43 fedora 134.0 KiB libpsl aarch64 0.21.5-6.fc43 fedora 132.5 KiB libselinux aarch64 3.9-5.fc43 fedora 201.1 KiB libsemanage aarch64 3.9-4.fc43 fedora 360.2 KiB libsepol aarch64 3.9-2.fc43 fedora 809.8 KiB libsmartcols aarch64 2.41.4-7.fc43 updates 224.6 KiB libssh aarch64 0.11.4-1.fc43 updates 587.7 KiB libssh-config noarch 0.11.4-1.fc43 updates 277.0 B libstdc++ aarch64 15.2.1-7.fc43 updates 2.8 MiB libtasn1 aarch64 4.21.0-1.fc43 updates 220.8 KiB libtool-ltdl aarch64 2.5.4-8.fc43 updates 94.0 KiB libunistring aarch64 1.1-10.fc43 fedora 1.7 MiB libusb1 aarch64 1.0.29-4.fc43 fedora 178.9 KiB libuuid aarch64 2.41.4-7.fc43 updates 69.4 KiB libverto aarch64 0.3.2-11.fc43 fedora 69.4 KiB libxcrypt aarch64 4.5.2-1.fc43 updates 273.4 KiB libxml2 aarch64 2.12.10-5.fc43 fedora 1.9 MiB libzstd aarch64 1.5.7-2.fc43 fedora 667.7 KiB lua-libs aarch64 5.4.8-4.fc43 updates 329.9 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs aarch64 1.10.0-3.fc43 fedora 197.4 KiB mpfr aarch64 4.2.2-2.fc43 fedora 755.5 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs aarch64 6.5-7.20250614.fc43 fedora 1.2 MiB nettle aarch64 3.10.1-2.fc43 fedora 765.3 KiB npth aarch64 1.8-3.fc43 fedora 93.5 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap aarch64 2.6.13-1.fc43 updates 764.2 KiB openssl-libs aarch64 1:3.5.4-2.fc43 updates 7.4 MiB p11-kit aarch64 0.26.2-1.fc43 updates 2.7 MiB p11-kit-trust aarch64 0.26.2-1.fc43 updates 530.3 KiB package-notes-srpm-macros noarch 0.5-15.fc43 updates 1.6 KiB pam-libs aarch64 1.7.1-4.fc43 updates 223.0 KiB pcre2 aarch64 10.47-1.fc43 updates 714.5 KiB pcre2-syntax noarch 10.47-1.fc43 updates 281.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf aarch64 2.3.0-3.fc43 fedora 112.4 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-3.fc43 fedora 990.0 B popt aarch64 1.19-9.fc43 fedora 144.8 KiB publicsuffix-list-dafsa noarch 20260116-1.fc43 updates 70.4 KiB pyproject-srpm-macros noarch 1.19.0-1.fc43 updates 1.9 KiB python-srpm-macros noarch 3.14-5.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.18-1.fc43 updates 500.0 B qt6-srpm-macros noarch 6.10.3-1.fc43 updates 472.0 B readline aarch64 8.3-2.fc43 fedora 563.8 KiB rpm aarch64 6.0.1-1.fc43 updates 3.4 MiB rpm-build-libs aarch64 6.0.1-1.fc43 updates 264.1 KiB rpm-libs aarch64 6.0.1-1.fc43 updates 995.5 KiB rpm-sequoia aarch64 1.10.1-1.fc43 updates 2.2 MiB rpm-sign-libs aarch64 6.0.1-1.fc43 updates 67.8 KiB rust-srpm-macros noarch 28.4-1.fc43 updates 5.5 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs aarch64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs aarch64 258.7-1.fc43 updates 2.4 MiB systemd-standalone-sysusers aarch64 258.7-1.fc43 updates 329.6 KiB tpm2-tss aarch64 4.1.3-8.fc43 fedora 2.1 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core aarch64 2.41.4-7.fc43 updates 2.4 MiB xxhash-libs aarch64 0.8.3-3.fc43 fedora 86.0 KiB xz-libs aarch64 1:5.8.1-4.fc43 updates 201.6 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip aarch64 3.0-44.fc43 fedora 762.5 KiB zlib-ng-compat aarch64 2.3.3-2.fc43 updates 133.5 KiB zstd aarch64 1.5.7-2.fc43 fedora 1.5 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 170 packages Total size of inbound packages is 58 MiB. Need to download 58 MiB. After this operation, 227 MiB extra will be used (install 227 MiB, remove 0 B). [ 1/170] bzip2-0:1.0.8-21.fc43.aarch64 100% | 3.6 MiB/s | 51.6 KiB | 00m00s [ 2/170] cpio-0:2.15-6.fc43.aarch64 100% | 14.1 MiB/s | 289.6 KiB | 00m00s [ 3/170] diffutils-0:3.12-3.fc43.aarch 100% | 38.1 MiB/s | 389.7 KiB | 00m00s [ 4/170] bash-0:5.3.0-2.fc43.aarch64 100% | 68.1 MiB/s | 1.8 MiB | 00m00s [ 5/170] findutils-1:4.10.0-6.fc43.aar 100% | 67.5 MiB/s | 552.7 KiB | 00m00s [ 6/170] gawk-0:5.3.2-2.fc43.aarch64 100% | 139.2 MiB/s | 1.1 MiB | 00m00s [ 7/170] grep-0:3.12-2.fc43.aarch64 100% | 48.2 MiB/s | 296.2 KiB | 00m00s [ 8/170] gzip-0:1.13-4.fc43.aarch64 100% | 23.4 MiB/s | 167.6 KiB | 00m00s [ 9/170] patch-0:2.8-2.fc43.aarch64 100% | 27.2 MiB/s | 111.6 KiB | 00m00s [ 10/170] redhat-rpm-config-0:343-11.fc 100% | 25.8 MiB/s | 79.1 KiB | 00m00s [ 11/170] sed-0:4.9-5.fc43.aarch64 100% | 76.7 MiB/s | 314.4 KiB | 00m00s [ 12/170] shadow-utils-2:4.18.0-3.fc43. 100% | 159.9 MiB/s | 1.3 MiB | 00m00s [ 13/170] tar-2:1.35-6.fc43.aarch64 100% | 83.1 MiB/s | 850.8 KiB | 00m00s [ 14/170] which-0:2.23-3.fc43.aarch64 100% | 20.2 MiB/s | 41.4 KiB | 00m00s [ 15/170] unzip-0:6.0-67.fc43.aarch64 100% | 22.6 MiB/s | 185.4 KiB | 00m00s [ 16/170] fedora-release-common-0:43-27 100% | 11.0 MiB/s | 22.6 KiB | 00m00s [ 17/170] glibc-minimal-langpack-0:2.42 100% | 20.5 MiB/s | 42.0 KiB | 00m00s [ 18/170] coreutils-0:9.7-8.fc43.aarch6 100% | 156.5 MiB/s | 1.1 MiB | 00m00s [ 19/170] info-0:7.2-7.fc43.aarch64 100% | 35.0 MiB/s | 179.2 KiB | 00m00s [ 20/170] rpm-build-0:6.0.1-1.fc43.aarc 100% | 21.6 MiB/s | 132.4 KiB | 00m00s [ 21/170] util-linux-0:2.41.4-7.fc43.aa 100% | 131.1 MiB/s | 1.2 MiB | 00m00s [ 22/170] xz-1:5.8.1-4.fc43.aarch64 100% | 46.7 MiB/s | 573.5 KiB | 00m00s [ 23/170] filesystem-0:3.18-50.fc43.aar 100% | 78.5 MiB/s | 1.3 MiB | 00m00s [ 24/170] bzip2-libs-0:1.0.8-21.fc43.aa 100% | 6.7 MiB/s | 40.9 KiB | 00m00s [ 25/170] ncurses-libs-0:6.5-7.20250614 100% | 24.4 MiB/s | 324.6 KiB | 00m00s [ 26/170] libselinux-0:3.9-5.fc43.aarch 100% | 23.6 MiB/s | 96.6 KiB | 00m00s [ 27/170] gmp-1:6.3.0-4.fc43.aarch64 100% | 53.0 MiB/s | 271.3 KiB | 00m00s [ 28/170] mpfr-0:4.2.2-2.fc43.aarch64 100% | 78.6 MiB/s | 322.0 KiB | 00m00s [ 29/170] readline-0:8.3-2.fc43.aarch64 100% | 36.1 MiB/s | 221.8 KiB | 00m00s [ 30/170] libattr-0:2.5.2-6.fc43.aarch6 100% | 3.5 MiB/s | 17.7 KiB | 00m00s [ 31/170] ed-0:1.22.2-1.fc43.aarch64 100% | 11.6 MiB/s | 83.1 KiB | 00m00s [ 32/170] ansible-srpm-macros-0:1-18.1. 100% | 9.7 MiB/s | 19.9 KiB | 00m00s [ 33/170] efi-srpm-macros-0:6-4.fc43.no 100% | 7.3 MiB/s | 22.4 KiB | 00m00s [ 34/170] filesystem-srpm-macros-0:3.18 100% | 12.9 MiB/s | 26.4 KiB | 00m00s [ 35/170] dwz-0:0.16-2.fc43.aarch64 100% | 32.3 MiB/s | 132.2 KiB | 00m00s [ 36/170] fonts-srpm-macros-1:2.0.5-23. 100% | 26.5 MiB/s | 27.2 KiB | 00m00s [ 37/170] forge-srpm-macros-0:0.4.0-3.f 100% | 9.8 MiB/s | 20.1 KiB | 00m00s [ 38/170] fpc-srpm-macros-0:1.3-15.fc43 100% | 3.9 MiB/s | 7.9 KiB | 00m00s [ 39/170] gap-srpm-macros-0:2-1.fc43.no 100% | 4.4 MiB/s | 9.0 KiB | 00m00s [ 40/170] ghc-srpm-macros-0:1.9.2-3.fc4 100% | 4.3 MiB/s | 8.7 KiB | 00m00s [ 41/170] java-srpm-macros-0:1-7.fc43.n 100% | 3.9 MiB/s | 7.9 KiB | 00m00s [ 42/170] kernel-srpm-macros-0:1.0-27.f 100% | 4.4 MiB/s | 8.9 KiB | 00m00s [ 43/170] go-srpm-macros-0:3.8.0-1.fc43 100% | 5.5 MiB/s | 28.3 KiB | 00m00s [ 44/170] ocaml-srpm-macros-0:11-2.fc43 100% | 4.5 MiB/s | 9.3 KiB | 00m00s [ 45/170] openblas-srpm-macros-0:2-20.f 100% | 3.7 MiB/s | 7.6 KiB | 00m00s [ 46/170] lua-srpm-macros-0:1-16.fc43.n 100% | 2.1 MiB/s | 8.8 KiB | 00m00s [ 47/170] perl-srpm-macros-0:1-60.fc43. 100% | 2.7 MiB/s | 8.3 KiB | 00m00s [ 48/170] python-srpm-macros-0:3.14-5.f 100% | 5.7 MiB/s | 23.4 KiB | 00m00s [ 49/170] tree-sitter-srpm-macros-0:0.4 100% | 2.6 MiB/s | 13.4 KiB | 00m00s [ 50/170] zig-srpm-macros-0:1-5.fc43.no 100% | 2.1 MiB/s | 8.4 KiB | 00m00s [ 51/170] libacl-0:2.3.2-4.fc43.aarch64 100% | 5.9 MiB/s | 24.2 KiB | 00m00s [ 52/170] zip-0:3.0-44.fc43.aarch64 100% | 36.6 MiB/s | 262.6 KiB | 00m00s [ 53/170] libeconf-0:0.7.9-2.fc43.aarch 100% | 6.9 MiB/s | 35.2 KiB | 00m00s [ 54/170] libsemanage-0:3.9-4.fc43.aarc 100% | 29.2 MiB/s | 119.5 KiB | 00m00s [ 55/170] setup-0:2.15.0-26.fc43.noarch 100% | 51.2 MiB/s | 157.3 KiB | 00m00s [ 56/170] fedora-repos-0:43-1.noarch 100% | 4.5 MiB/s | 9.1 KiB | 00m00s [ 57/170] coreutils-common-0:9.7-8.fc43 100% | 210.2 MiB/s | 2.1 MiB | 00m00s [ 58/170] glibc-common-0:2.42-11.fc43.a 100% | 28.2 MiB/s | 317.1 KiB | 00m00s [ 59/170] glibc-0:2.42-11.fc43.aarch64 100% | 107.2 MiB/s | 1.8 MiB | 00m00s [ 60/170] rpm-0:6.0.1-1.fc43.aarch64 100% | 51.2 MiB/s | 576.3 KiB | 00m00s [ 61/170] pkgconf-pkg-config-0:2.3.0-3. 100% | 9.4 MiB/s | 9.6 KiB | 00m00s [ 62/170] debugedit-0:5.2-3.fc43.aarch6 100% | 13.8 MiB/s | 84.7 KiB | 00m00s [ 63/170] popt-0:1.19-9.fc43.aarch64 100% | 21.3 MiB/s | 65.3 KiB | 00m00s [ 64/170] zstd-0:1.5.7-2.fc43.aarch64 100% | 109.1 MiB/s | 446.9 KiB | 00m00s [ 65/170] libblkid-0:2.41.4-7.fc43.aarc 100% | 23.8 MiB/s | 121.8 KiB | 00m00s [ 66/170] libfdisk-0:2.41.4-7.fc43.aarc 100% | 37.7 MiB/s | 154.6 KiB | 00m00s [ 67/170] liblastlog2-0:2.41.4-7.fc43.a 100% | 7.8 MiB/s | 23.9 KiB | 00m00s [ 68/170] libmount-0:2.41.4-7.fc43.aarc 100% | 31.1 MiB/s | 159.0 KiB | 00m00s [ 69/170] libuuid-0:2.41.4-7.fc43.aarch 100% | 12.8 MiB/s | 26.2 KiB | 00m00s [ 70/170] libsmartcols-0:2.41.4-7.fc43. 100% | 20.2 MiB/s | 82.7 KiB | 00m00s [ 71/170] util-linux-core-0:2.41.4-7.fc 100% | 132.2 MiB/s | 541.3 KiB | 00m00s [ 72/170] xz-libs-1:5.8.1-4.fc43.aarch6 100% | 27.1 MiB/s | 111.1 KiB | 00m00s [ 73/170] ncurses-base-0:6.5-7.20250614 100% | 21.5 MiB/s | 88.2 KiB | 00m00s [ 74/170] libsepol-0:3.9-2.fc43.aarch64 100% | 79.0 MiB/s | 323.6 KiB | 00m00s [ 75/170] gnulib-l10n-0:20241231-1.fc43 100% | 36.7 MiB/s | 150.2 KiB | 00m00s [ 76/170] fedora-gpg-keys-0:43-1.noarch 100% | 33.9 MiB/s | 138.9 KiB | 00m00s [ 77/170] pkgconf-0:2.3.0-3.fc43.aarch6 100% | 43.4 MiB/s | 44.4 KiB | 00m00s [ 78/170] pkgconf-m4-0:2.3.0-3.fc43.noa 100% | 6.8 MiB/s | 13.9 KiB | 00m00s [ 79/170] glibc-gconv-extra-0:2.42-11.f 100% | 166.1 MiB/s | 1.7 MiB | 00m00s [ 80/170] lz4-libs-0:1.10.0-3.fc43.aarc 100% | 9.7 MiB/s | 79.5 KiB | 00m00s [ 81/170] sqlite-libs-0:3.50.2-2.fc43.a 100% | 72.5 MiB/s | 742.8 KiB | 00m00s [ 82/170] libpkgconf-0:2.3.0-3.fc43.aar 100% | 12.3 MiB/s | 37.9 KiB | 00m00s [ 83/170] rpm-libs-0:6.0.1-1.fc43.aarch 100% | 61.8 MiB/s | 379.8 KiB | 00m00s [ 84/170] libzstd-0:1.5.7-2.fc43.aarch6 100% | 69.2 MiB/s | 283.6 KiB | 00m00s [ 85/170] rpm-build-libs-0:6.0.1-1.fc43 100% | 28.7 MiB/s | 117.5 KiB | 00m00s [ 86/170] rpm-sign-libs-0:6.0.1-1.fc43. 100% | 26.7 MiB/s | 27.3 KiB | 00m00s [ 87/170] ima-evm-utils-libs-0:1.6.2-6. 100% | 28.6 MiB/s | 29.3 KiB | 00m00s [ 88/170] libfsverity-0:1.6-3.fc43.aarc 100% | 9.1 MiB/s | 18.6 KiB | 00m00s [ 89/170] json-c-0:0.18-7.fc43.aarch64 100% | 22.0 MiB/s | 45.1 KiB | 00m00s [ 90/170] tpm2-tss-0:4.1.3-8.fc43.aarch 100% | 78.2 MiB/s | 400.5 KiB | 00m00s [ 91/170] libusb1-0:1.0.29-4.fc43.aarch 100% | 18.9 MiB/s | 77.5 KiB | 00m00s [ 92/170] libgcc-0:15.2.1-7.fc43.aarch6 100% | 39.2 MiB/s | 120.5 KiB | 00m00s [ 93/170] zlib-ng-compat-0:2.3.3-2.fc43 100% | 14.1 MiB/s | 72.2 KiB | 00m00s [ 94/170] libstdc++-0:15.2.1-7.fc43.aar 100% | 119.3 MiB/s | 854.9 KiB | 00m00s [ 95/170] openssl-libs-1:3.5.4-2.fc43.a 100% | 204.2 MiB/s | 2.4 MiB | 00m00s [ 96/170] audit-libs-0:4.1.4-1.fc43.aar 100% | 15.2 MiB/s | 139.8 KiB | 00m00s [ 97/170] libxcrypt-0:4.5.2-1.fc43.aarc 100% | 15.3 MiB/s | 125.2 KiB | 00m00s [ 98/170] pam-libs-0:1.7.1-4.fc43.aarch 100% | 27.7 MiB/s | 56.8 KiB | 00m00s [ 99/170] build-reproducibility-srpm-ma 100% | 3.9 MiB/s | 11.9 KiB | 00m00s [100/170] file-0:5.46-9.fc43.aarch64 100% | 23.8 MiB/s | 48.8 KiB | 00m00s [101/170] add-determinism-0:0.6.0-3.fc4 100% | 115.4 MiB/s | 827.2 KiB | 00m00s [102/170] gnat-srpm-macros-0:7-1.fc43.n 100% | 1.7 MiB/s | 8.7 KiB | 00m00s [103/170] file-libs-0:5.46-9.fc43.aarch 100% | 118.3 MiB/s | 847.7 KiB | 00m00s [104/170] package-notes-srpm-macros-0:0 100% | 4.4 MiB/s | 9.0 KiB | 00m00s [105/170] pyproject-srpm-macros-0:1.19. 100% | 6.5 MiB/s | 13.2 KiB | 00m00s [106/170] qt5-srpm-macros-0:5.15.18-1.f 100% | 2.8 MiB/s | 8.6 KiB | 00m00s [107/170] qt6-srpm-macros-0:6.10.3-1.fc 100% | 3.0 MiB/s | 9.1 KiB | 00m00s [108/170] rust-srpm-macros-0:28.4-1.fc4 100% | 3.5 MiB/s | 10.8 KiB | 00m00s [109/170] systemd-libs-0:258.7-1.fc43.a 100% | 128.6 MiB/s | 790.1 KiB | 00m00s [110/170] pcre2-0:10.47-1.fc43.aarch64 100% | 40.1 MiB/s | 246.2 KiB | 00m00s [111/170] pcre2-syntax-0:10.47-1.fc43.n 100% | 32.2 MiB/s | 164.7 KiB | 00m00s [112/170] elfutils-libelf-0:0.194-1.fc4 100% | 65.9 MiB/s | 202.3 KiB | 00m00s [113/170] elfutils-libs-0:0.194-1.fc43. 100% | 86.6 MiB/s | 266.0 KiB | 00m00s [114/170] elfutils-debuginfod-client-0: 100% | 45.2 MiB/s | 46.3 KiB | 00m00s [115/170] elfutils-0:0.194-1.fc43.aarch 100% | 87.2 MiB/s | 535.6 KiB | 00m00s [116/170] jansson-0:2.14-3.fc43.aarch64 100% | 15.2 MiB/s | 46.7 KiB | 00m00s [117/170] libcap-ng-0:0.9.3-1.fc43.aarc 100% | 33.7 MiB/s | 34.6 KiB | 00m00s [118/170] libcap-0:2.76-4.fc43.aarch64 100% | 7.7 MiB/s | 87.1 KiB | 00m00s [119/170] gnupg2-0:2.4.9-5.fc43.aarch64 100% | 85.0 MiB/s | 1.6 MiB | 00m00s [120/170] gpgverify-0:2.2-3.fc43.noarch 100% | 1.2 MiB/s | 11.1 KiB | 00m00s [121/170] binutils-0:2.45.1-4.fc43.aarc 100% | 169.8 MiB/s | 6.3 MiB | 00m00s [122/170] gnupg2-dirmngr-0:2.4.9-5.fc43 100% | 18.6 MiB/s | 266.2 KiB | 00m00s [123/170] gnupg2-gpg-agent-0:2.4.9-5.fc 100% | 18.6 MiB/s | 266.4 KiB | 00m00s [124/170] gnupg2-gpgconf-0:2.4.9-5.fc43 100% | 18.6 MiB/s | 114.0 KiB | 00m00s [125/170] gnupg2-keyboxd-0:2.4.9-5.fc43 100% | 14.9 MiB/s | 91.4 KiB | 00m00s [126/170] gnupg2-verify-0:2.4.9-5.fc43. 100% | 22.9 MiB/s | 164.3 KiB | 00m00s [127/170] libassuan-0:2.5.7-4.fc43.aarc 100% | 16.2 MiB/s | 66.5 KiB | 00m00s [128/170] npth-0:1.8-3.fc43.aarch64 100% | 12.2 MiB/s | 25.0 KiB | 00m00s [129/170] libgpg-error-0:1.55-2.fc43.aa 100% | 47.5 MiB/s | 243.5 KiB | 00m00s [130/170] libksba-0:1.6.7-4.fc43.aarch6 100% | 51.3 MiB/s | 157.5 KiB | 00m00s [131/170] lua-libs-0:5.4.8-4.fc43.aarch 100% | 31.5 MiB/s | 129.1 KiB | 00m00s [132/170] rpm-sequoia-0:1.10.1-1.fc43.a 100% | 119.8 MiB/s | 858.4 KiB | 00m00s [133/170] libgomp-0:15.2.1-7.fc43.aarch 100% | 59.5 MiB/s | 365.4 KiB | 00m00s [134/170] libarchive-0:3.8.4-1.fc43.aar 100% | 44.9 MiB/s | 413.6 KiB | 00m00s [135/170] libxml2-0:2.12.10-5.fc43.aarc 100% | 60.3 MiB/s | 678.7 KiB | 00m00s [136/170] curl-0:8.15.0-6.fc43.aarch64 100% | 21.8 MiB/s | 223.7 KiB | 00m00s [137/170] ca-certificates-0:2025.2.80_v 100% | 68.0 MiB/s | 974.5 KiB | 00m00s [138/170] crypto-policies-0:20251125-1. 100% | 11.9 MiB/s | 97.8 KiB | 00m00s [139/170] libgcrypt-0:1.11.1-3.fc43.aar 100% | 63.3 MiB/s | 518.4 KiB | 00m00s [140/170] gnutls-0:3.8.12-1.fc43.aarch6 100% | 161.1 MiB/s | 1.3 MiB | 00m00s [141/170] libidn2-0:2.3.8-2.fc43.aarch6 100% | 21.3 MiB/s | 174.6 KiB | 00m00s [142/170] libunistring-0:1.1-10.fc43.aa 100% | 58.5 MiB/s | 539.2 KiB | 00m00s [143/170] nettle-0:3.10.1-2.fc43.aarch6 100% | 83.1 MiB/s | 425.7 KiB | 00m00s [144/170] openldap-0:2.6.13-1.fc43.aarc 100% | 49.1 MiB/s | 251.4 KiB | 00m00s [145/170] cyrus-sasl-lib-0:2.1.28-33.fc 100% | 126.0 MiB/s | 774.0 KiB | 00m00s [146/170] libevent-0:2.1.12-16.fc43.aar 100% | 61.9 MiB/s | 253.4 KiB | 00m00s [147/170] gdbm-libs-1:1.23-10.fc43.aarc 100% | 13.7 MiB/s | 56.0 KiB | 00m00s [148/170] elfutils-default-yama-scope-0 100% | 12.1 MiB/s | 12.4 KiB | 00m00s [149/170] libffi-0:3.5.2-1.fc43.aarch64 100% | 38.4 MiB/s | 39.4 KiB | 00m00s [150/170] p11-kit-0:0.26.2-1.fc43.aarch 100% | 128.2 MiB/s | 525.2 KiB | 00m00s [151/170] p11-kit-trust-0:0.26.2-1.fc43 100% | 34.2 MiB/s | 140.1 KiB | 00m00s [152/170] alternatives-0:1.33-3.fc43.aa 100% | 13.1 MiB/s | 40.3 KiB | 00m00s [153/170] libtool-ltdl-0:2.5.4-8.fc43.a 100% | 17.4 MiB/s | 35.6 KiB | 00m00s [154/170] fedora-release-0:43-27.noarch 100% | 5.6 MiB/s | 11.5 KiB | 00m00s [155/170] libtasn1-0:4.21.0-1.fc43.aarc 100% | 24.0 MiB/s | 73.8 KiB | 00m00s [156/170] xxhash-libs-0:0.8.3-3.fc43.aa 100% | 11.2 MiB/s | 34.5 KiB | 00m00s [157/170] systemd-standalone-sysusers-0 100% | 23.3 MiB/s | 143.2 KiB | 00m00s [158/170] fedora-release-identity-basic 100% | 4.0 MiB/s | 12.3 KiB | 00m00s [159/170] libcurl-0:8.15.0-6.fc43.aarch 100% | 25.5 MiB/s | 392.1 KiB | 00m00s [160/170] libssh-0:0.11.4-1.fc43.aarch6 100% | 15.1 MiB/s | 231.5 KiB | 00m00s [161/170] gdb-minimal-0:17.1-4.fc43.aar 100% | 140.9 MiB/s | 4.2 MiB | 00m00s [162/170] libpsl-0:0.21.5-6.fc43.aarch6 100% | 7.1 MiB/s | 65.1 KiB | 00m00s [163/170] libnghttp2-0:1.66.0-2.fc43.aa 100% | 7.1 MiB/s | 72.2 KiB | 00m00s [164/170] libssh-config-0:0.11.4-1.fc43 100% | 4.5 MiB/s | 9.2 KiB | 00m00s [165/170] publicsuffix-list-dafsa-0:202 100% | 29.4 MiB/s | 60.3 KiB | 00m00s [166/170] keyutils-libs-0:1.6.3-6.fc43. 100% | 15.4 MiB/s | 31.5 KiB | 00m00s [167/170] krb5-libs-0:1.22.2-3.fc43.aar 100% | 149.1 MiB/s | 763.4 KiB | 00m00s [168/170] libcom_err-0:1.47.3-2.fc43.aa 100% | 8.7 MiB/s | 26.7 KiB | 00m00s [169/170] libverto-0:0.3.2-11.fc43.aarc 100% | 10.0 MiB/s | 20.4 KiB | 00m00s [170/170] libbrotli-0:1.2.0-1.fc43.aarc 100% | 85.5 MiB/s | 350.4 KiB | 00m00s -------------------------------------------------------------------------------- [170/170] Total 100% | 150.5 MiB/s | 57.8 MiB | 00m00s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/172] Verify package files 100% | 809.0 B/s | 170.0 B | 00m00s [ 2/172] Prepare transaction 100% | 2.6 KiB/s | 170.0 B | 00m00s [ 3/172] Installing libgcc-0:15.2.1-7. 100% | 218.6 MiB/s | 223.9 KiB | 00m00s [ 4/172] Installing publicsuffix-list- 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [ 5/172] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/172] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0 B | 00m00s [ 7/172] Installing fedora-gpg-keys-0: 100% | 29.1 MiB/s | 179.0 KiB | 00m00s [ 8/172] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/172] Installing fedora-release-com 100% | 24.3 MiB/s | 24.8 KiB | 00m00s [ 10/172] Installing fedora-release-0:4 100% | 13.5 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/172] Installing setup-0:2.15.0-26. 100% | 37.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/172] Installing filesystem-0:3.18- 100% | 2.0 MiB/s | 212.8 KiB | 00m00s [ 13/172] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 14/172] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [ 15/172] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 16/172] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 17/172] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 18/172] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 19/172] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 20/172] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 21/172] Installing coreutils-common-0 100% | 305.2 MiB/s | 11.3 MiB | 00m00s [ 22/172] Installing ncurses-base-0:6.5 100% | 57.5 MiB/s | 353.5 KiB | 00m00s [ 23/172] Installing bash-0:5.3.0-2.fc4 100% | 210.7 MiB/s | 8.4 MiB | 00m00s [ 24/172] Installing glibc-common-0:2.4 100% | 60.2 MiB/s | 1.3 MiB | 00m00s [ 25/172] Installing glibc-gconv-extra- 100% | 397.1 MiB/s | 18.7 MiB | 00m00s [ 26/172] Installing glibc-0:2.42-11.fc 100% | 149.5 MiB/s | 6.3 MiB | 00m00s [ 27/172] Installing ncurses-libs-0:6.5 100% | 249.5 MiB/s | 1.2 MiB | 00m00s [ 28/172] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 29/172] Installing zlib-ng-compat-0:2 100% | 131.2 MiB/s | 134.4 KiB | 00m00s [ 30/172] Installing bzip2-libs-0:1.0.8 100% | 72.0 MiB/s | 73.8 KiB | 00m00s [ 31/172] Installing libgpg-error-0:1.5 100% | 47.7 MiB/s | 977.1 KiB | 00m00s [ 32/172] Installing libstdc++-0:15.2.1 100% | 315.1 MiB/s | 2.8 MiB | 00m00s [ 33/172] Installing xz-libs-1:5.8.1-4. 100% | 197.9 MiB/s | 202.7 KiB | 00m00s [ 34/172] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 35/172] Installing libgcrypt-0:1.11.1 100% | 238.9 MiB/s | 1.2 MiB | 00m00s [ 36/172] Installing readline-0:8.3-2.f 100% | 276.3 MiB/s | 565.9 KiB | 00m00s [ 37/172] Installing gmp-1:6.3.0-4.fc43 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 38/172] Installing libuuid-0:2.41.4-7 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 39/172] Installing popt-0:1.19-9.fc43 100% | 49.3 MiB/s | 151.4 KiB | 00m00s [ 40/172] Installing npth-0:1.8-3.fc43. 100% | 92.4 MiB/s | 94.6 KiB | 00m00s [ 41/172] Installing libblkid-0:2.41.4- 100% | 284.7 MiB/s | 291.5 KiB | 00m00s [ 42/172] Installing sqlite-libs-0:3.50 100% | 250.2 MiB/s | 1.5 MiB | 00m00s [ 43/172] Installing libzstd-0:1.5.7-2. 100% | 217.8 MiB/s | 669.0 KiB | 00m00s [ 44/172] Installing elfutils-libelf-0: 100% | 286.1 MiB/s | 1.1 MiB | 00m00s [ 45/172] Installing libxcrypt-0:4.5.2- 100% | 134.8 MiB/s | 276.1 KiB | 00m00s [ 46/172] Installing gnupg2-gpgconf-0:2 100% | 18.6 MiB/s | 324.0 KiB | 00m00s [ 47/172] Installing libattr-0:2.5.2-6. 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [ 48/172] Installing libacl-0:2.3.2-4.f 100% | 67.2 MiB/s | 68.8 KiB | 00m00s [ 49/172] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 50/172] Installing libidn2-0:2.3.8-2. 100% | 138.4 MiB/s | 566.7 KiB | 00m00s [ 51/172] Installing libtasn1-0:4.21.0- 100% | 24.2 MiB/s | 222.6 KiB | 00m00s [ 52/172] Installing crypto-policies-0: 100% | 24.0 MiB/s | 172.2 KiB | 00m00s [ 53/172] Installing dwz-0:0.16-2.fc43. 100% | 16.7 MiB/s | 324.0 KiB | 00m00s [ 54/172] Installing gnupg2-verify-0:2. 100% | 21.0 MiB/s | 365.8 KiB | 00m00s [ 55/172] Installing mpfr-0:4.2.2-2.fc4 100% | 184.9 MiB/s | 757.2 KiB | 00m00s [ 56/172] Installing gawk-0:5.3.2-2.fc4 100% | 103.3 MiB/s | 2.6 MiB | 00m00s [ 57/172] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.0 KiB | 00m00s [ 58/172] Installing unzip-0:6.0-67.fc4 100% | 27.2 MiB/s | 473.7 KiB | 00m00s [ 59/172] Installing file-libs-0:5.46-9 100% | 565.9 MiB/s | 11.9 MiB | 00m00s [ 60/172] Installing file-0:5.46-9.fc43 100% | 8.1 MiB/s | 141.7 KiB | 00m00s [ 61/172] Installing libeconf-0:0.7.9-2 100% | 80.7 MiB/s | 82.6 KiB | 00m00s [ 62/172] Installing libsmartcols-0:2.4 100% | 220.3 MiB/s | 225.6 KiB | 00m00s [ 63/172] Installing libsepol-0:3.9-2.f 100% | 263.9 MiB/s | 810.8 KiB | 00m00s [ 64/172] Installing lz4-libs-0:1.10.0- 100% | 193.9 MiB/s | 198.5 KiB | 00m00s [ 65/172] Installing json-c-0:0.18-7.fc 100% | 136.7 MiB/s | 139.9 KiB | 00m00s [ 66/172] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.9 KiB | 00m00s [ 67/172] Installing libselinux-0:3.9-5 100% | 197.6 MiB/s | 202.4 KiB | 00m00s [ 68/172] Installing grep-0:3.12-2.fc43 100% | 47.2 MiB/s | 1.0 MiB | 00m00s [ 69/172] Installing findutils-1:4.10.0 100% | 80.0 MiB/s | 1.9 MiB | 00m00s [ 70/172] Installing sed-0:4.9-5.fc43.a 100% | 41.0 MiB/s | 881.4 KiB | 00m00s [ 71/172] Installing xz-1:5.8.1-4.fc43. 100% | 58.9 MiB/s | 1.4 MiB | 00m00s [ 72/172] Installing libmount-0:2.41.4- 100% | 205.7 MiB/s | 421.3 KiB | 00m00s [ 73/172] Installing libcap-ng-0:0.9.3- 100% | 159.1 MiB/s | 162.9 KiB | 00m00s [ 74/172] Installing audit-libs-0:4.1.4 100% | 239.0 MiB/s | 489.5 KiB | 00m00s [ 75/172] Installing pam-libs-0:1.7.1-4 100% | 220.0 MiB/s | 225.3 KiB | 00m00s [ 76/172] Installing libcap-0:2.76-4.fc 100% | 27.9 MiB/s | 513.9 KiB | 00m00s [ 77/172] Installing systemd-libs-0:258 100% | 300.1 MiB/s | 2.4 MiB | 00m00s [ 78/172] Installing lua-libs-0:5.4.8-4 100% | 161.8 MiB/s | 331.4 KiB | 00m00s [ 79/172] Installing libffi-0:3.5.2-1.f 100% | 153.6 MiB/s | 157.3 KiB | 00m00s [ 80/172] Installing p11-kit-0:0.26.2-1 100% | 98.7 MiB/s | 2.8 MiB | 00m00s [ 81/172] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 91.8 KiB | 00m00s [ 82/172] Installing p11-kit-trust-0:0. 100% | 19.2 MiB/s | 532.0 KiB | 00m00s [ 83/172] Installing openssl-libs-1:3.5 100% | 296.9 MiB/s | 7.4 MiB | 00m00s [ 84/172] Installing coreutils-0:9.7-8. 100% | 175.0 MiB/s | 8.2 MiB | 00m00s [ 85/172] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.5 MiB | 00m02s [ 86/172] Installing gzip-0:1.13-4.fc43 100% | 22.1 MiB/s | 430.2 KiB | 00m00s [ 87/172] Installing libfsverity-0:1.6- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [ 88/172] Installing rpm-sequoia-0:1.10 100% | 279.1 MiB/s | 2.2 MiB | 00m00s [ 89/172] Installing libevent-0:2.1.12- 100% | 271.3 MiB/s | 1.1 MiB | 00m00s [ 90/172] Installing util-linux-core-0: 100% | 94.9 MiB/s | 2.5 MiB | 00m00s [ 91/172] Installing libusb1-0:1.0.29-4 100% | 17.6 MiB/s | 180.6 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 92/172] Installing tpm2-tss-0:4.1.3-8 100% | 239.9 MiB/s | 2.2 MiB | 00m00s [ 93/172] Installing ima-evm-utils-libs 100% | 91.8 MiB/s | 94.0 KiB | 00m00s [ 94/172] Installing gnupg2-gpg-agent-0 100% | 29.7 MiB/s | 851.3 KiB | 00m00s [ 95/172] Installing systemd-standalone 100% | 17.9 MiB/s | 330.2 KiB | 00m00s [ 96/172] Installing rpm-libs-0:6.0.1-1 100% | 243.4 MiB/s | 997.1 KiB | 00m00s [ 97/172] Installing libsemanage-0:3.9- 100% | 176.7 MiB/s | 361.9 KiB | 00m00s [ 98/172] Installing tar-2:1.35-6.fc43. 100% | 111.3 MiB/s | 3.0 MiB | 00m00s [ 99/172] Installing zstd-0:1.5.7-2.fc4 100% | 71.7 MiB/s | 1.5 MiB | 00m00s [100/172] Installing zip-0:3.0-44.fc43. 100% | 39.4 MiB/s | 766.4 KiB | 00m00s [101/172] Installing gnupg2-keyboxd-0:2 100% | 28.6 MiB/s | 234.6 KiB | 00m00s [102/172] Installing libpsl-0:0.21.5-6. 100% | 130.5 MiB/s | 133.6 KiB | 00m00s [103/172] Installing liblastlog2-0:2.41 100% | 17.1 MiB/s | 140.1 KiB | 00m00s [104/172] Installing libfdisk-0:2.41.4- 100% | 205.1 MiB/s | 420.0 KiB | 00m00s [105/172] Installing nettle-0:3.10.1-2. 100% | 250.1 MiB/s | 768.4 KiB | 00m00s [106/172] Installing gnutls-0:3.8.12-1. 100% | 279.7 MiB/s | 3.6 MiB | 00m00s [107/172] Installing libxml2-0:2.12.10- 100% | 78.8 MiB/s | 1.9 MiB | 00m00s [108/172] Installing libarchive-0:3.8.4 100% | 238.6 MiB/s | 977.2 KiB | 00m00s [109/172] Installing bzip2-0:1.0.8-21.f 100% | 10.1 MiB/s | 175.8 KiB | 00m00s [110/172] Installing add-determinism-0: 100% | 92.4 MiB/s | 2.0 MiB | 00m00s [111/172] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [112/172] Installing cpio-0:2.15-6.fc43 100% | 52.2 MiB/s | 1.1 MiB | 00m00s [113/172] Installing diffutils-0:3.12-3 100% | 70.6 MiB/s | 1.6 MiB | 00m00s [114/172] Installing ed-0:1.22.2-1.fc43 100% | 9.1 MiB/s | 158.3 KiB | 00m00s [115/172] Installing patch-0:2.8-2.fc43 100% | 15.2 MiB/s | 264.1 KiB | 00m00s [116/172] Installing libpkgconf-0:2.3.0 100% | 132.0 MiB/s | 135.1 KiB | 00m00s [117/172] Installing pkgconf-0:2.3.0-3. 100% | 6.6 MiB/s | 114.9 KiB | 00m00s [118/172] Installing pkgconf-pkg-config 100% | 110.8 KiB/s | 1.8 KiB | 00m00s [119/172] Installing jansson-0:2.14-3.f 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [120/172] Installing libgomp-0:15.2.1-7 100% | 253.1 MiB/s | 518.4 KiB | 00m00s [121/172] Installing gdbm-libs-1:1.23-1 100% | 230.1 MiB/s | 235.6 KiB | 00m00s [122/172] Installing cyrus-sasl-lib-0:2 100% | 100.7 MiB/s | 2.4 MiB | 00m00s [123/172] Installing libtool-ltdl-0:2.5 100% | 92.9 MiB/s | 95.1 KiB | 00m00s [124/172] Installing openldap-0:2.6.13- 100% | 187.5 MiB/s | 768.0 KiB | 00m00s [125/172] Installing gnupg2-dirmngr-0:2 100% | 23.5 MiB/s | 649.1 KiB | 00m00s [126/172] Installing gnupg2-0:2.4.9-5.f 100% | 172.1 MiB/s | 6.5 MiB | 00m00s [127/172] Installing rpm-sign-libs-0:6. 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [128/172] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [129/172] Installing xxhash-libs-0:0.8. 100% | 85.3 MiB/s | 87.4 KiB | 00m00s [130/172] Installing libnghttp2-0:1.66. 100% | 194.4 MiB/s | 199.1 KiB | 00m00s [131/172] Installing keyutils-libs-0:1. 100% | 97.4 MiB/s | 99.8 KiB | 00m00s [132/172] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.2 KiB | 00m00s [133/172] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.2 KiB | 00m00s [134/172] Installing krb5-libs-0:1.22.2 100% | 253.5 MiB/s | 2.5 MiB | 00m00s [135/172] Installing libssh-0:0.11.4-1. 100% | 192.0 MiB/s | 589.8 KiB | 00m00s [136/172] Installing libbrotli-0:1.2.0- 100% | 222.6 MiB/s | 911.8 KiB | 00m00s [137/172] Installing libcurl-0:8.15.0-6 100% | 223.7 MiB/s | 916.2 KiB | 00m00s [138/172] Installing curl-0:8.15.0-6.fc 100% | 16.0 MiB/s | 460.1 KiB | 00m00s [139/172] Installing rpm-0:6.0.1-1.fc43 100% | 60.0 MiB/s | 2.8 MiB | 00m00s [140/172] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [141/172] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [142/172] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [143/172] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [144/172] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/172] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [146/172] Installing elfutils-default-y 100% | 291.9 KiB/s | 2.0 KiB | 00m00s [147/172] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.5 KiB | 00m00s [148/172] Installing elfutils-debuginfo 100% | 7.5 MiB/s | 146.3 KiB | 00m00s [149/172] Installing elfutils-0:0.194-1 100% | 123.2 MiB/s | 3.2 MiB | 00m00s [150/172] Installing binutils-0:2.45.1- 100% | 287.2 MiB/s | 31.0 MiB | 00m00s [151/172] Installing gdb-minimal-0:17.1 100% | 234.2 MiB/s | 13.4 MiB | 00m00s [152/172] Installing debugedit-0:5.2-3. 100% | 17.4 MiB/s | 321.2 KiB | 00m00s [153/172] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 265.0 KiB | 00m00s [154/172] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [155/172] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [156/172] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [157/172] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [158/172] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [159/172] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [160/172] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [161/172] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [162/172] Installing rpm-build-0:6.0.1- 100% | 31.3 MiB/s | 608.1 KiB | 00m00s [163/172] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [164/172] Installing redhat-rpm-config- 100% | 92.3 MiB/s | 189.1 KiB | 00m00s [165/172] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [166/172] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [167/172] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [168/172] Installing python-srpm-macros 100% | 25.8 MiB/s | 52.8 KiB | 00m00s [169/172] Installing util-linux-0:2.41. 100% | 132.0 MiB/s | 6.9 MiB | 00m00s [170/172] Installing shadow-utils-2:4.1 100% | 107.0 MiB/s | 4.5 MiB | 00m00s [171/172] Installing which-0:2.23-3.fc4 100% | 7.2 MiB/s | 125.6 KiB | 00m00s [172/172] Installing info-0:7.2-7.fc43. 100% | 185.0 KiB/s | 422.0 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-3.fc43.aarch64 alternatives-1.33-3.fc43.aarch64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.4-1.fc43.aarch64 bash-5.3.0-2.fc43.aarch64 binutils-2.45.1-4.fc43.aarch64 build-reproducibility-srpm-macros-0.6.0-3.fc43.noarch bzip2-1.0.8-21.fc43.aarch64 bzip2-libs-1.0.8-21.fc43.aarch64 ca-certificates-2025.2.80_v9.0.304-1.2.fc43.noarch coreutils-9.7-8.fc43.aarch64 coreutils-common-9.7-8.fc43.aarch64 cpio-2.15-6.fc43.aarch64 crypto-policies-20251125-1.git63291f8.fc43.noarch curl-8.15.0-6.fc43.aarch64 cyrus-sasl-lib-2.1.28-33.fc43.aarch64 debugedit-5.2-3.fc43.aarch64 diffutils-3.12-3.fc43.aarch64 dwz-0.16-2.fc43.aarch64 ed-1.22.2-1.fc43.aarch64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.194-1.fc43.aarch64 elfutils-debuginfod-client-0.194-1.fc43.aarch64 elfutils-default-yama-scope-0.194-1.fc43.noarch elfutils-libelf-0.194-1.fc43.aarch64 elfutils-libs-0.194-1.fc43.aarch64 fedora-gpg-keys-43-1.noarch fedora-release-43-27.noarch fedora-release-common-43-27.noarch fedora-release-identity-basic-43-27.noarch fedora-repos-43-1.noarch file-5.46-9.fc43.aarch64 file-libs-5.46-9.fc43.aarch64 filesystem-3.18-50.fc43.aarch64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.aarch64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc43.noarch gawk-5.3.2-2.fc43.aarch64 gdb-minimal-17.1-4.fc43.aarch64 gdbm-libs-1.23-10.fc43.aarch64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42-11.fc43.aarch64 glibc-common-2.42-11.fc43.aarch64 glibc-gconv-extra-2.42-11.fc43.aarch64 glibc-minimal-langpack-2.42-11.fc43.aarch64 gmp-6.3.0-4.fc43.aarch64 gnat-srpm-macros-7-1.fc43.noarch gnulib-l10n-20241231-1.fc43.noarch gnupg2-2.4.9-5.fc43.aarch64 gnupg2-dirmngr-2.4.9-5.fc43.aarch64 gnupg2-gpg-agent-2.4.9-5.fc43.aarch64 gnupg2-gpgconf-2.4.9-5.fc43.aarch64 gnupg2-keyboxd-2.4.9-5.fc43.aarch64 gnupg2-verify-2.4.9-5.fc43.aarch64 gnutls-3.8.12-1.fc43.aarch64 go-srpm-macros-3.8.0-1.fc43.noarch gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.aarch64 gzip-1.13-4.fc43.aarch64 ima-evm-utils-libs-1.6.2-6.fc43.aarch64 info-7.2-7.fc43.aarch64 jansson-2.14-3.fc43.aarch64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.aarch64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.aarch64 krb5-libs-1.22.2-3.fc43.aarch64 libacl-2.3.2-4.fc43.aarch64 libarchive-3.8.4-1.fc43.aarch64 libassuan-2.5.7-4.fc43.aarch64 libattr-2.5.2-6.fc43.aarch64 libblkid-2.41.4-7.fc43.aarch64 libbrotli-1.2.0-1.fc43.aarch64 libcap-2.76-4.fc43.aarch64 libcap-ng-0.9.3-1.fc43.aarch64 libcom_err-1.47.3-2.fc43.aarch64 libcurl-8.15.0-6.fc43.aarch64 libeconf-0.7.9-2.fc43.aarch64 libevent-2.1.12-16.fc43.aarch64 libfdisk-2.41.4-7.fc43.aarch64 libffi-3.5.2-1.fc43.aarch64 libfsverity-1.6-3.fc43.aarch64 libgcc-15.2.1-7.fc43.aarch64 libgcrypt-1.11.1-3.fc43.aarch64 libgomp-15.2.1-7.fc43.aarch64 libgpg-error-1.55-2.fc43.aarch64 libidn2-2.3.8-2.fc43.aarch64 libksba-1.6.7-4.fc43.aarch64 liblastlog2-2.41.4-7.fc43.aarch64 libmount-2.41.4-7.fc43.aarch64 libnghttp2-1.66.0-2.fc43.aarch64 libpkgconf-2.3.0-3.fc43.aarch64 libpsl-0.21.5-6.fc43.aarch64 libselinux-3.9-5.fc43.aarch64 libsemanage-3.9-4.fc43.aarch64 libsepol-3.9-2.fc43.aarch64 libsmartcols-2.41.4-7.fc43.aarch64 libssh-0.11.4-1.fc43.aarch64 libssh-config-0.11.4-1.fc43.noarch libstdc++-15.2.1-7.fc43.aarch64 libtasn1-4.21.0-1.fc43.aarch64 libtool-ltdl-2.5.4-8.fc43.aarch64 libunistring-1.1-10.fc43.aarch64 libusb1-1.0.29-4.fc43.aarch64 libuuid-2.41.4-7.fc43.aarch64 libverto-0.3.2-11.fc43.aarch64 libxcrypt-4.5.2-1.fc43.aarch64 libxml2-2.12.10-5.fc43.aarch64 libzstd-1.5.7-2.fc43.aarch64 lua-libs-5.4.8-4.fc43.aarch64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.aarch64 mpfr-4.2.2-2.fc43.aarch64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.aarch64 nettle-3.10.1-2.fc43.aarch64 npth-1.8-3.fc43.aarch64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.13-1.fc43.aarch64 openssl-libs-3.5.4-2.fc43.aarch64 p11-kit-0.26.2-1.fc43.aarch64 p11-kit-trust-0.26.2-1.fc43.aarch64 package-notes-srpm-macros-0.5-15.fc43.noarch pam-libs-1.7.1-4.fc43.aarch64 patch-2.8-2.fc43.aarch64 pcre2-10.47-1.fc43.aarch64 pcre2-syntax-10.47-1.fc43.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.aarch64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.aarch64 popt-1.19-9.fc43.aarch64 publicsuffix-list-dafsa-20260116-1.fc43.noarch pyproject-srpm-macros-1.19.0-1.fc43.noarch python-srpm-macros-3.14-5.fc43.noarch qt5-srpm-macros-5.15.18-1.fc43.noarch qt6-srpm-macros-6.10.3-1.fc43.noarch readline-8.3-2.fc43.aarch64 redhat-rpm-config-343-11.fc43.noarch rpm-6.0.1-1.fc43.aarch64 rpm-build-6.0.1-1.fc43.aarch64 rpm-build-libs-6.0.1-1.fc43.aarch64 rpm-libs-6.0.1-1.fc43.aarch64 rpm-sequoia-1.10.1-1.fc43.aarch64 rpm-sign-libs-6.0.1-1.fc43.aarch64 rust-srpm-macros-28.4-1.fc43.noarch sed-4.9-5.fc43.aarch64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.aarch64 sqlite-libs-3.50.2-2.fc43.aarch64 systemd-libs-258.7-1.fc43.aarch64 systemd-standalone-sysusers-258.7-1.fc43.aarch64 tar-1.35-6.fc43.aarch64 tpm2-tss-4.1.3-8.fc43.aarch64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-67.fc43.aarch64 util-linux-2.41.4-7.fc43.aarch64 util-linux-core-2.41.4-7.fc43.aarch64 which-2.23-3.fc43.aarch64 xxhash-libs-0.8.3-3.fc43.aarch64 xz-5.8.1-4.fc43.aarch64 xz-libs-5.8.1-4.fc43.aarch64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.aarch64 zlib-ng-compat-2.3.3-2.fc43.aarch64 zstd-1.5.7-2.fc43.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1776816000 Wrote: /builddir/build/SRPMS/freesurfer-8.2.0-7.fc43.src.rpm RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-aarch64-1776874811.726303/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-2tfzpmwm/freesurfer/freesurfer.spec) Config(child) 0 minutes 36 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/freesurfer-8.2.0-7.fc43.src.rpm) Config(fedora-43-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1776874811.726303/root. INFO: reusing tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1776874811.726303/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-1776874811.726303/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.aarch64 rpm-sequoia-1.10.1-1.fc43.aarch64 dnf5-5.2.18.0-2.fc43.aarch64 dnf5-plugins-5.2.18.0-2.fc43.aarch64 Finish: chroot init Start: build phase for freesurfer-8.2.0-7.fc43.src.rpm Start: build setup for freesurfer-8.2.0-7.fc43.src.rpm Building target platforms: aarch64 Building for target aarch64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1776816000 Wrote: /builddir/build/SRPMS/freesurfer-8.2.0-7.fc43.src.rpm RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Updating and loading repositories: Copr repository 100% | 1.3 KiB/s | 1.5 KiB | 00m01s fedora 100% | 10.9 KiB/s | 14.3 KiB | 00m01s updates 100% | 9.2 KiB/s | 11.6 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: InsightToolkit5-devel aarch64 5.4.5-16.fc43 copr_base 21.6 MiB blas-devel aarch64 3.12.0-10.fc43 fedora 132.4 KiB cmake aarch64 3.31.11-1.fc43 updates 29.7 MiB eigen3-devel noarch 3.4.0-18.fc43 fedora 8.4 MiB expat-devel aarch64 2.7.3-1.fc43 updates 208.4 KiB freeglut-devel aarch64 3.8.0-1.fc43 updates 2.3 MiB gcc-c++ aarch64 15.2.1-7.fc43 updates 38.9 MiB gcc-gfortran aarch64 15.2.1-7.fc43 updates 36.8 MiB gifticlib-devel aarch64 1.0.9-29.fc43 fedora 22.2 KiB lapack-devel aarch64 3.12.0-10.fc43 fedora 1.6 MiB libX11-devel aarch64 1.8.13-1.fc43 updates 1.0 MiB libXi-devel aarch64 1.8.2-3.fc43 fedora 132.5 KiB libXmu-devel aarch64 1.2.1-4.fc43 fedora 66.2 KiB libXt-devel aarch64 1.3.1-3.fc43 fedora 1.6 MiB libjpeg-turbo-devel aarch64 3.1.3-1.fc43 updates 353.9 KiB libpng-devel aarch64 2:1.6.56-1.fc43 updates 1.1 MiB libtiff-devel aarch64 4.7.1-1.fc43 updates 805.0 KiB libxml2-devel aarch64 2.12.10-5.fc43 fedora 3.4 MiB mesa-libGL-devel aarch64 25.3.6-3.fc43 updates 80.8 KiB ninja-build aarch64 1.13.1-4.fc43 fedora 468.0 KiB openssl-devel aarch64 1:3.5.4-2.fc43 updates 4.6 MiB petsc-devel aarch64 3.23.6-5.fc43 fedora 10.3 MiB python3-devel aarch64 3.14.3-2.fc43 updates 1.9 MiB qt6-qtbase-devel aarch64 6.10.3-1.fc43 updates 22.1 MiB tetgen-devel aarch64 1.5.0-30.fc43 fedora 131.6 KiB vtk-devel aarch64 9.5.2-11.fc43 copr_base 30.5 MiB xxd aarch64 2:9.2.280-1.fc43 updates 77.3 KiB zlib-ng-compat-devel aarch64 2.3.3-2.fc43 updates 107.0 KiB Installing dependencies: CharLS aarch64 2.4.3-2.fc43 updates 346.9 KiB InsightToolkit5 aarch64 5.4.5-16.fc43 copr_base 44.6 MiB InsightToolkit5-vtk aarch64 5.4.5-16.fc43 copr_base 1.2 MiB InsightToolkit5-vtk-devel aarch64 5.4.5-16.fc43 copr_base 22.4 KiB PEGTL-devel aarch64 2.8.3-13.fc43 fedora 678.1 KiB SDL3 aarch64 3.4.0-3.fc43 updates 3.0 MiB SuperLU aarch64 7.0.1-2.fc43 fedora 458.3 KiB abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB abseil-cpp aarch64 20250814.1-1.fc43 fedora 6.5 MiB adwaita-cursor-theme noarch 49.0-1.fc43 fedora 11.4 MiB adwaita-icon-theme noarch 49.0-1.fc43 fedora 1.2 MiB adwaita-icon-theme-legacy noarch 46.2-4.fc43 fedora 2.1 MiB annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc aarch64 12.99-1.fc43 fedora 1.0 MiB armadillo aarch64 12.8.1-7.fc43 fedora 146.1 KiB arpack aarch64 3.9.1-7.fc43 fedora 553.9 KiB at-spi2-atk aarch64 2.58.5-1.fc43 updates 359.2 KiB at-spi2-core aarch64 2.58.5-1.fc43 updates 1.7 MiB atk aarch64 2.58.5-1.fc43 updates 296.8 KiB autoconf noarch 2.72-7.fc43 fedora 2.8 MiB automake noarch 1.18.1-2.fc43 fedora 1.8 MiB avahi-glib aarch64 0.9~rc2-6.fc43 fedora 67.6 KiB avahi-libs aarch64 0.9~rc2-6.fc43 fedora 230.4 KiB blas aarch64 3.12.0-10.fc43 fedora 1.4 MiB blas64 aarch64 3.12.0-10.fc43 fedora 1.0 MiB blas64_ aarch64 3.12.0-10.fc43 fedora 1.0 MiB blosc aarch64 1.21.6-7.fc43 fedora 129.9 KiB boost aarch64 1.83.0-17.fc43 fedora 1.3 KiB boost-atomic aarch64 1.83.0-17.fc43 fedora 68.8 KiB boost-chrono aarch64 1.83.0-17.fc43 fedora 69.4 KiB boost-container aarch64 1.83.0-17.fc43 fedora 69.4 KiB boost-context aarch64 1.83.0-17.fc43 fedora 68.4 KiB boost-contract aarch64 1.83.0-17.fc43 fedora 134.7 KiB boost-coroutine aarch64 1.83.0-17.fc43 fedora 69.1 KiB boost-date-time aarch64 1.83.0-17.fc43 fedora 68.2 KiB boost-devel aarch64 1.83.0-17.fc43 fedora 143.0 MiB boost-fiber aarch64 1.83.0-17.fc43 fedora 134.4 KiB boost-filesystem aarch64 1.83.0-17.fc43 fedora 134.8 KiB boost-graph aarch64 1.83.0-17.fc43 fedora 334.0 KiB boost-iostreams aarch64 1.83.0-17.fc43 fedora 134.2 KiB boost-json aarch64 1.83.0-17.fc43 fedora 328.4 KiB boost-locale aarch64 1.83.0-17.fc43 fedora 594.6 KiB boost-log aarch64 1.83.0-17.fc43 fedora 1.5 MiB boost-math aarch64 1.83.0-17.fc43 fedora 862.2 KiB boost-nowide aarch64 1.83.0-17.fc43 fedora 68.9 KiB boost-numpy3 aarch64 1.83.0-17.fc43 fedora 69.4 KiB boost-program-options aarch64 1.83.0-17.fc43 fedora 267.4 KiB boost-python3 aarch64 1.83.0-17.fc43 fedora 268.3 KiB boost-random aarch64 1.83.0-17.fc43 fedora 69.5 KiB boost-regex aarch64 1.83.0-17.fc43 fedora 266.3 KiB boost-serialization aarch64 1.83.0-17.fc43 fedora 467.4 KiB boost-stacktrace aarch64 1.83.0-17.fc43 fedora 203.7 KiB boost-system aarch64 1.83.0-17.fc43 fedora 68.2 KiB boost-test aarch64 1.83.0-17.fc43 fedora 728.4 KiB boost-thread aarch64 1.83.0-17.fc43 fedora 136.3 KiB boost-timer aarch64 1.83.0-17.fc43 fedora 69.0 KiB boost-type_erasure aarch64 1.83.0-17.fc43 fedora 70.0 KiB boost-wave aarch64 1.83.0-17.fc43 fedora 854.2 KiB brotli aarch64 1.2.0-1.fc43 updates 69.6 KiB brotli-devel aarch64 1.2.0-1.fc43 updates 65.9 KiB bubblewrap aarch64 0.11.0-2.fc43 fedora 182.8 KiB bzip2-devel aarch64 1.0.8-21.fc43 fedora 309.8 KiB cairo aarch64 1.18.4-2.fc43 fedora 1.8 MiB cairo-devel aarch64 1.18.4-2.fc43 fedora 2.3 MiB cairo-gobject aarch64 1.18.4-2.fc43 fedora 67.2 KiB cfitsio aarch64 4.6.3-1.fc43 updates 1.7 MiB cgnslib aarch64 4.5.1-1.fc43 updates 2.2 MiB cgnslib-common noarch 4.5.1-1.fc43 updates 508.9 KiB cgnslib-devel aarch64 4.5.1-1.fc43 updates 159.6 KiB cgnslib-libs aarch64 4.5.1-1.fc43 updates 920.1 KiB cmake-data noarch 3.31.11-1.fc43 updates 8.5 MiB cmake-filesystem aarch64 3.31.11-1.fc43 updates 0.0 B cmake-rpm-macros noarch 3.31.11-1.fc43 updates 8.2 KiB colord-libs aarch64 1.4.8-2.fc43 fedora 970.2 KiB cpp aarch64 15.2.1-7.fc43 updates 35.5 MiB cups-filesystem noarch 1:2.4.17-1.fc43 updates 0.0 B cups-libs aarch64 1:2.4.17-1.fc43 updates 731.0 KiB dbus aarch64 1:1.16.0-4.fc43 fedora 0.0 B dbus-libs aarch64 1:1.16.0-4.fc43 fedora 397.8 KiB dcmtk aarch64 3.6.9-3.fc43 fedora 41.0 MiB dcmtk-devel aarch64 3.6.9-3.fc43 fedora 14.4 MiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB double-conversion aarch64 3.4.0-1.fc43 updates 141.2 KiB double-conversion-devel aarch64 3.4.0-1.fc43 updates 103.7 KiB duktape aarch64 2.7.0-10.fc43 fedora 671.9 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B expat aarch64 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perl-MIME-Base32 noarch 1.303-24.fc43 fedora 30.7 KiB perl-MIME-Base64 aarch64 3.16-520.fc43 fedora 94.1 KiB perl-Net-SSLeay aarch64 1.94-11.fc43 fedora 1.4 MiB perl-POSIX aarch64 2.23-523.fc43 updates 261.6 KiB perl-PathTools aarch64 3.94-520.fc43 fedora 224.0 KiB perl-Pod-Escapes noarch 1:1.07-520.fc43 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-521.fc43 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-3.fc43 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-520.fc43 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-1.fc43 fedora 152.9 KiB perl-SelectSaver noarch 1.02-523.fc43 updates 2.2 KiB perl-Socket aarch64 4:2.040-2.fc43 fedora 144.3 KiB perl-Storable aarch64 1:3.37-521.fc43 fedora 243.2 KiB perl-Symbol noarch 1.09-523.fc43 updates 6.8 KiB perl-Term-ANSIColor noarch 5.01-521.fc43 fedora 97.5 KiB perl-Term-Cap noarch 1.18-520.fc43 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-520.fc43 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-520.fc43 fedora 22.6 KiB perl-Thread-Queue noarch 3.14-520.fc43 fedora 28.9 KiB perl-Time-Local noarch 2:1.350-520.fc43 fedora 69.0 KiB perl-URI noarch 5.34-2.fc43 updates 268.0 KiB perl-base noarch 2.27-523.fc43 updates 12.6 KiB perl-constant noarch 1.33-521.fc43 fedora 26.2 KiB perl-if noarch 0.61.000-523.fc43 updates 5.8 KiB perl-interpreter aarch64 4:5.42.2-523.fc43 updates 174.8 KiB perl-libnet noarch 3.15-521.fc43 fedora 289.4 KiB perl-libs aarch64 4:5.42.2-523.fc43 updates 11.6 MiB perl-locale noarch 1.13-523.fc43 updates 6.1 KiB perl-mro aarch64 1.29-523.fc43 updates 81.6 KiB perl-overload noarch 1.40-523.fc43 updates 71.6 KiB perl-overloading noarch 0.02-523.fc43 updates 4.9 KiB perl-parent noarch 1:0.244-520.fc43 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-520.fc43 fedora 317.5 KiB perl-threads aarch64 1:2.43-520.fc43 fedora 135.1 KiB perl-threads-shared aarch64 1.70-520.fc43 fedora 103.7 KiB perl-vars noarch 1.05-523.fc43 updates 3.9 KiB petsc aarch64 3.23.6-5.fc43 fedora 21.8 MiB pixman aarch64 0.46.2-2.fc43 fedora 654.5 KiB pixman-devel aarch64 0.46.2-2.fc43 fedora 56.1 KiB poppler aarch64 25.07.0-3.fc43 updates 3.5 MiB poppler-data noarch 0.4.11-10.fc43 fedora 12.3 MiB proj aarch64 9.6.2-2.fc43 fedora 4.3 MiB proj-data noarch 9.6.2-2.fc43 fedora 9.3 MiB proj-devel aarch64 9.6.2-2.fc43 fedora 561.6 KiB protobuf aarch64 3.19.6-18.fc43 fedora 3.2 MiB publicsuffix-list noarch 20260116-1.fc43 updates 342.2 KiB pugixml aarch64 1.15-1.fc43 fedora 265.3 KiB pugixml-devel aarch64 1.15-1.fc43 fedora 67.2 KiB pyproject-rpm-macros noarch 1.19.0-1.fc43 updates 116.7 KiB python-pip-wheel noarch 25.1.1-18.fc43 fedora 1.2 MiB python-rpm-macros noarch 3.14-5.fc43 fedora 23.2 KiB python3 aarch64 3.14.3-2.fc43 updates 84.8 KiB python3-libs aarch64 3.14.3-2.fc43 updates 45.1 MiB python3-numpy aarch64 1:2.3.5-1.fc43 updates 35.2 MiB python3-numpy-f2py aarch64 1:2.3.5-1.fc43 updates 2.1 MiB python3-packaging noarch 25.0-7.fc43 fedora 607.4 KiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-5.fc43 fedora 6.5 KiB python3-vtk aarch64 9.5.2-11.fc43 copr_base 110.8 MiB qt6-filesystem aarch64 6.10.3-1.fc43 updates 0.0 B qt6-qtbase aarch64 6.10.3-1.fc43 updates 13.5 MiB qt6-qtbase-common noarch 6.10.3-1.fc43 updates 76.0 B qt6-qtbase-gui aarch64 6.10.3-1.fc43 updates 26.9 MiB qt6-qtbase-ibase aarch64 6.10.3-1.fc43 updates 150.6 KiB qt6-qtbase-mysql aarch64 6.10.3-1.fc43 updates 150.3 KiB qt6-qtbase-odbc aarch64 6.10.3-1.fc43 updates 149.8 KiB qt6-qtbase-postgresql aarch64 6.10.3-1.fc43 updates 150.2 KiB qt6-qtdeclarative aarch64 6.10.3-1.fc43 updates 59.1 MiB qt6-qtdeclarative-devel aarch64 6.10.3-1.fc43 updates 24.0 MiB qt6-qtsvg aarch64 6.10.3-1.fc43 updates 950.5 KiB qt6-rpm-macros noarch 6.10.3-1.fc43 updates 3.0 KiB rav1e-libs aarch64 0.8.1-2.fc43 updates 2.1 MiB re2 aarch64 2:20251105-1.fc43 updates 599.2 KiB rhash aarch64 1.4.5-3.fc43 fedora 394.8 KiB sdl2-compat aarch64 2.32.64-1.fc43 updates 484.5 KiB shared-mime-info aarch64 2.4-2.fc43 fedora 5.3 MiB snappy aarch64 1.2.2-2.fc43 fedora 83.6 KiB spirv-tools-libs aarch64 2026.1-2.fc43 updates 5.6 MiB sqlite aarch64 3.50.2-2.fc43 fedora 1.9 MiB sqlite-devel aarch64 3.50.2-2.fc43 fedora 684.1 KiB svt-av1-libs aarch64 3.1.2-1.fc43 fedora 3.4 MiB sysprof-capture-devel aarch64 49.0-1.fc43 fedora 767.4 KiB tcl8 aarch64 1:8.6.16-2.fc43 fedora 4.3 MiB tetgen aarch64 1.5.0-30.fc43 fedora 618.7 KiB thrift aarch64 0.20.0-8.fc43 fedora 4.6 MiB tk8 aarch64 1:8.6.16-2.fc43 fedora 3.2 MiB tslib aarch64 1.23-2.fc43 fedora 1.7 MiB tzdata noarch 2026a-1.fc43 updates 1.6 MiB unixODBC aarch64 2.3.14-2.fc43 updates 1.3 MiB uriparser aarch64 1.0.0-1.fc43 updates 238.7 KiB utf8cpp-devel noarch 4.0.8-1.fc43 fedora 140.8 KiB utf8proc aarch64 2.10.0-2.fc43 fedora 412.1 KiB vim-filesystem noarch 2:9.2.280-1.fc43 updates 40.0 B vtk aarch64 9.5.2-11.fc43 copr_base 179.3 MiB vtk-qt aarch64 9.5.2-11.fc43 copr_base 1.6 MiB vulkan-headers noarch 1.4.341.0-1.fc43 updates 36.1 MiB vulkan-loader aarch64 1.4.341.0-1.fc43 updates 613.4 KiB vulkan-loader-devel aarch64 1.4.341.0-1.fc43 updates 8.0 KiB wayland-devel aarch64 1.24.0-1.fc43 fedora 712.0 KiB xcb-util aarch64 0.4.1-8.fc43 fedora 70.3 KiB xcb-util-cursor aarch64 0.1.5-4.fc43 fedora 71.2 KiB xcb-util-image aarch64 0.4.1-8.fc43 fedora 70.2 KiB xcb-util-keysyms aarch64 0.4.1-8.fc43 fedora 68.6 KiB xcb-util-renderutil aarch64 0.3.10-8.fc43 fedora 72.4 KiB xcb-util-wm aarch64 0.4.2-8.fc43 fedora 137.3 KiB xerces-c aarch64 3.3.0-8.fc43 fedora 3.7 MiB xkeyboard-config noarch 2.46-1.fc43 updates 10.2 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-5.fc43 fedora 1.7 MiB xprop aarch64 1.2.8-4.fc43 fedora 78.7 KiB xz-devel aarch64 1:5.8.1-4.fc43 updates 258.8 KiB Transaction Summary: Installing: 521 packages Total size of inbound packages is 473 MiB. Need to download 473 MiB. After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B). 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Running transaction [ 1/523] Verify package files 100% | 334.0 B/s | 521.0 B | 00m02s >>> Running %pretrans scriptlet: xkeyboard-config-0:2.46-1.fc43.noarch >>> Finished %pretrans scriptlet: xkeyboard-config-0:2.46-1.fc43.noarch >>> [RPM] /var/lib/mock/fedora-43-aarch64-1776874811.726303/root/var/cache/dnf/c [ 2/523] Prepare transaction 100% | 884.0 B/s | 521.0 B | 00m01s [ 3/523] Installing cmake-filesystem-0 100% | 2.5 MiB/s | 7.6 KiB | 00m00s [ 4/523] Installing glib2-0:2.86.5-1.f 100% | 218.1 MiB/s | 15.7 MiB | 00m00s [ 5/523] Installing expat-0:2.7.3-1.fc 100% | 19.7 MiB/s | 363.1 KiB | 00m00s [ 6/523] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.6 KiB | 00m00s [ 7/523] Installing libgfortran-0:15.2 100% | 285.2 MiB/s | 1.7 MiB | 00m00s [ 8/523] Installing libpng-2:1.6.56-1. 100% | 132.4 MiB/s | 271.1 KiB | 00m00s [ 9/523] Installing xorg-x11-proto-dev 100% | 162.1 MiB/s | 1.8 MiB | 00m00s [ 10/523] Installing libjpeg-turbo-0:3. 100% | 242.0 MiB/s | 743.5 KiB | 00m00s [ 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Building target platforms: aarch64 Building for target aarch64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1776816000 Wrote: /builddir/build/SRPMS/freesurfer-8.2.0-7.fc43.src.rpm RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Updating and loading repositories: Copr repository 100% | 20.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 58.3 KiB/s | 14.3 KiB | 00m00s updates 100% | 73.7 KiB/s | 11.6 KiB | 00m00s Repositories loaded. Package "InsightToolkit5-devel-5.4.5-16.fc43.aarch64" is already installed. Package "blas-devel-3.12.0-10.fc43.aarch64" is already installed. Package "cmake-3.31.11-1.fc43.aarch64" is already installed. Package "eigen3-devel-3.4.0-18.fc43.noarch" is already installed. Package "expat-devel-2.7.3-1.fc43.aarch64" is already installed. Package "freeglut-devel-3.8.0-1.fc43.aarch64" is already installed. Package "gcc-c++-15.2.1-7.fc43.aarch64" is already installed. Package "gcc-gfortran-15.2.1-7.fc43.aarch64" is already installed. Package "gifticlib-devel-1.0.9-29.fc43.aarch64" is already installed. Package "lapack-devel-3.12.0-10.fc43.aarch64" is already installed. Package "libX11-devel-1.8.13-1.fc43.aarch64" is already installed. Package "libXi-devel-1.8.2-3.fc43.aarch64" is already installed. Package "libXmu-devel-1.2.1-4.fc43.aarch64" is already installed. Package "libXt-devel-1.3.1-3.fc43.aarch64" is already installed. Package "libjpeg-turbo-devel-3.1.3-1.fc43.aarch64" is already installed. Package "libpng-devel-2:1.6.56-1.fc43.aarch64" is already installed. Package "libtiff-devel-4.7.1-1.fc43.aarch64" is already installed. Package "libxml2-devel-2.12.10-5.fc43.aarch64" is already installed. Package "mesa-libGL-devel-25.3.6-3.fc43.aarch64" is already installed. Package "ninja-build-1.13.1-4.fc43.aarch64" is already installed. Package "openssl-devel-1:3.5.4-2.fc43.aarch64" is already installed. Package "petsc-devel-3.23.6-5.fc43.aarch64" is already installed. Package "python3-devel-3.14.3-2.fc43.aarch64" is already installed. Package "qt6-qtbase-devel-6.10.3-1.fc43.aarch64" is already installed. Package "tetgen-devel-1.5.0-30.fc43.aarch64" is already installed. Package "vtk-devel-9.5.2-11.fc43.aarch64" is already installed. Package "xxd-2:9.2.280-1.fc43.aarch64" is already installed. Package "zlib-ng-compat-devel-2.3.3-2.fc43.aarch64" is already installed. Nothing to do. Finish: build setup for freesurfer-8.2.0-7.fc43.src.rpm Start: rpmbuild freesurfer-8.2.0-7.fc43.src.rpm Building target platforms: aarch64 Building for target aarch64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1776816000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.umNoYs Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.gvfIMa + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + cd /builddir/build/BUILD/freesurfer-8.2.0-build + rm -rf freesurfer-8.2.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/freesurfer-8.2.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd freesurfer-8.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/freesurfer-fedora-host-os.patch + /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i 's/COND_ExtractConditions(CTNBOOLEAN(\*callback) ())/COND_ExtractConditions(CTNBOOLEAN(*callback) (CONDITION, const char*))/' packages/dicom/condition.h + sed -i 's/COND_EstablishCallback(void (\*callback) ())/COND_EstablishCallback(void (*callback) (CONDITION, const char*))/' packages/dicom/condition.h + sed -i 's/LST_Sort(LST_HEAD \*\* list, size_t nodeSize, int (\*compare) ())/LST_Sort(LST_HEAD ** list, size_t nodeSize, int (*compare) (LST_NODE*, LST_NODE*))/' packages/dicom/lst.h + sed -i 's/add_compile_options(-w -fPIC)/add_compile_options(-w -fPIC -std=gnu89)/' packages/CMakeLists.txt + sed -i '/^ glut$/d;/^ gifti$/d;/^ tetgen$/d' packages/CMakeLists.txt + sed -i '/^ xml2$/d;/^ expat$/d' packages/CMakeLists.txt + sed -i 's|${CMAKE_SOURCE_DIR}/packages/xml2|/usr/include/libxml2|' utils/CMakeLists.txt + sed -i $'/target_link_libraries(utils/,/)/{\n s/\\bexpat\\b/-lexpat/\n}' utils/CMakeLists.txt + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i '/target_link_libraries/s/\bxml2\b/-lxml2/g' '{}' + + sed -i '1i #include ' utils/fsPrintHelp.cpp + sed -i s/Qt::WA_NoBackground/Qt::WA_NoSystemBackground/g freeview/GenericRenderView.cpp + sed -i 's/QVTKOpenGLWidget\.h/QVTKOpenGLNativeWidget.h/' freeview/main.cpp + sed -i s/QVTKOpenGLWidget::defaultFormat/QVTKOpenGLNativeWidget::defaultFormat/ freeview/main.cpp + sed -i /QVTK9/d freeview/CMakeLists.txt + sed -i $'/^public:/a\\\n /* VTK 9.5 compat: forward old method names to new camelCase names */\\\n vtkRenderWindow* GetRenderWindow() { return renderWindow(); }\\\n template void SetRenderWindow(T w) { setRenderWindow(w); }' freeview/GenericRenderView.h + sed -i 's/set(QT_LIBRARIES ${QT_LIBRARIES} Qt5::X11Extras)/if(Qt5_DIR)\n set(QT_LIBRARIES ${QT_LIBRARIES} Qt5::X11Extras)\n endif()/' freeview/CMakeLists.txt + find . -name CMakeLists.txt -exec sed -i /install_tarball/d '{}' + + sed -i '/add_subdirectories(/,/)/{/anatomicuts/d;/resurf/d}' CMakeLists.txt + sed -i 's|#if (__GNUC__ > 3) \&\& !defined(HAVE_MCHECK) \&\& !defined(ARM64)|#if (__GNUC__ > 3) \&\& !defined(HAVE_MCHECK) \&\& !defined(ARM64) \&\& defined(__x86_64__)|' include/affine.h + sed -i 's|#include |#ifdef __x86_64__\n#include \n#endif|' include/affine.hpp + sed -i -z 's|//! Specialise matrix-vector for float and use SSE|#ifdef __x86_64__\n\n//! Specialise matrix-vector for float and use SSE|' include/affine.hpp + sed -i -z 's|}\n\n}\n\n\n#endif|}\n\n#endif // __x86_64__\n\n}\n\n\n#endif|' include/affine.hpp + cat + cat + sed -i '\|/packages/gifti|d' utils/CMakeLists.txt + sed -i $'/target_link_libraries(utils/,/)/{\n s/\\bgifti\\b/giftiio/\n}' utils/CMakeLists.txt + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i 's|${CMAKE_SOURCE_DIR}/packages/tetgen|/usr/include|g' '{}' + + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i '/target_link_libraries/s/\btetgen\b/tet/g' '{}' + + sed -i 's/target_link_libraries(vtkutils tiff)/target_link_libraries(vtkutils tiff VTK::CommonCore VTK::CommonDataModel VTK::RenderingCore VTK::RenderingOpenGL2 VTK::FiltersCore VTK::FiltersSources VTK::ImagingCore)/' vtkutils/CMakeLists.txt + sed -i 's/VTK_LEGACY(void SetColorSpaceToHSVNoWrap())/\/\/ VTK_LEGACY removed/' vtkutils/vtkRGBATransferFunction.h + sed -i '/^void vtkRGBATransferFunction::SetColorSpaceToHSVNoWrap/,/^}/s/^/\/\//' vtkutils/vtkRGBATransferFunction.cxx + sed -i /build-stamp/d CMakeLists.txt + sed -i '/symlink(.*python.*bin.*python3)/d' CMakeLists.txt + echo '# Disabled for RPM build — no fspython' + sed -i 's|\${CMAKE_INSTALL_PREFIX}/\${INSTALL_DESTINATION}|$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/\${INSTALL_DESTINATION}|g' cmake/functions.cmake + sed -i $'/^function(install_append_help/,/^endfunction()/c\\\nfunction(install_append_help SCRIPT HELPTEXT DESTINATION)\\\n install_configured(${SCRIPT} DESTINATION ${DESTINATION})\\\n install(FILES ${HELPTEXT} DESTINATION docs/xml)\\\n add_test(${SCRIPT}_help_test bash -c "xmllint --noout ${CMAKE_CURRENT_SOURCE_DIR}/${HELPTEXT}")\\\nendfunction()' cmake/functions.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.N77mj3 + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error' + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive' + export 'FFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -GNinja -DMINIMAL=OFF -DBUILD_GUIS=ON -DFREEVIEW_LINEPROF=OFF -DDISTRIBUTE_FSPYTHON=OFF -DINSTALL_PYTHON_DEPENDENCIES=OFF -DTIFF_SYSLIBS=ON -DGLUT_SYSLIBS=ON -DMARTINOS_BUILD=OFF -DWARNING_AS_ERROR=OFF -DBUILD_FORTRAN=ON -DINTEGRATE_SAMSEG=ON -DLINK_SHARED_AS_NEEDED=ON -DVTK_DIR=/usr/lib64/cmake/vtk -DITK_DIR=/usr/lib64/cmake/ITK-5.4 -DQt6_DIR=/usr/lib64/cmake/Qt6 -DCMAKE_INSTALL_PREFIX=/usr/lib/freesurfer CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- The Fortran compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran - skipped CMake Warning at CMakeLists.txt:74 (message): FS_PACKAGES_DIR is NOT defined - build will be limited -- For HOST_OS=Fedora FSPYTHON_INSTALL_PREFIX=/usr/lib/freesurfer -- For HOST_OS=Fedora lineprof disabled -- For HOST_OS=Fedora TIFF_SYSLIBS=ON -- For HOST_OS=Fedora INTEGRATE_SAMSEG=ON -- No build type selected - defaulting to Release -- For HOST_OS=Fedora QT_SYSLIBS=ON -- For HOST_OS=Fedora VTK_SYSLIBS=ON -- For HOST_OS=Fedora ITK_SYSLIBS=ON -- For HOST_OS=Fedora GLUT_SYSLIBS=ON -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- For HOST_OS=Fedora C/C++ standard set to 17 for gcc/g++ version 15 -- Could NOT find PETSC (missing: PETSC_INCLUDE_DIR) -- Could NOT find ANN (missing: ANN_INCLUDE_DIR ANN_LIBRARIES) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Could NOT find OpenCV (missing: OpenCV_INCLUDE_DIR OpenCV_LIBRARIES) -- OpenSSL_INCLUDE_DIR=/usr/include -- OpenSSL_LIB_DIR=/lib64 -- Found X11: /usr/include -- For HOST_OS=Fedora X11_LIBRARIES=/usr/lib64/libX11.so;/usr/lib64/libXmu.so;/usr/lib64/libXt.so -- For HOST_OS=Fedora X11_INCLUDE_DIR=/usr/include -- Found OpenGL: /usr/lib64/libOpenGL.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_STDATOMIC -- Performing Test HAVE_STDATOMIC - Success -- Found WrapAtomic: TRUE -- Found WrapOpenGL: TRUE -- Found WrapVulkanHeaders: /usr/include -- Could NOT find Qt6X11Extras (missing: Qt6X11Extras_DIR) CMake Warning at cmake/FindQT.cmake:21 (find_package): Found package configuration file: /usr/lib64/cmake/Qt6/Qt6Config.cmake but it set Qt6_FOUND to FALSE so package "Qt6" is considered to be NOT FOUND. Reason given by package: Failed to find required Qt component "X11Extras". Expected Config file at "/usr/lib64/cmake/Qt6X11Extras/Qt6X11ExtrasConfig.cmake" does NOT exist Configuring with --debug-find-pkg=Qt6X11Extras might reveal details why the package was not found. Configuring with -DQT_DEBUG_FIND_PACKAGE=ON will print the values of some of the path variables that find_package uses to try and find the package. Call Stack (most recent call first): CMakeLists.txt:577 (find_package) -- For HOST_OS=Fedora Qt6_DIR=/usr/lib64/cmake/Qt6 -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") -- Found utf8cpp: /usr/include/utf8cpp -- Found JsonCpp: /usr/lib64/libjsoncpp.so (found suitable version "1.9.6", minimum required is "0.7.0") -- Found PEGTL: /usr/include/tao (found suitable version "2.8.3", minimum required is "2.0.0") -- Found PNG: /usr/lib64/libpng.so (found version "1.6.56") -- Found EXPAT: /usr/lib64/libexpat.so (found suitable version "2.7.3", minimum required is "2.5.0") -- Found LZ4: /usr/lib64/liblz4.so (found version "1.10.0") -- Found LZMA: /usr/lib64/liblzma.so (found version "5.8.1") -- Found JPEG: /usr/lib64/libjpeg.so (found version "62") -- Found TIFF: /usr/lib64/libtiff.so (found version "4.7.1") -- Could NOT find freetype (missing: freetype_DIR) -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.13.3") -- Found double-conversion: /usr/lib64/libdouble-conversion.so -- For HOST_OS=Fedora VTK_DIR=/usr/lib64/cmake/vtk -- Found HDF5: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libhdf5.so (found version "1.14.6") found components: CXX C HL -- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.3", minimum required is "3.14") found components: Interpreter Development.Module Development.Embed -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.10") -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.6") found components: C HL -- Found NetCDF: netcdf (found version "4.9.2") -- Found THEORA: /usr/lib64/libtheora.so -- Found OGG: /usr/lib64/libogg.so -- Found LibHaru: /usr/lib64/libhpdf.so (found suitable version "2.4.5", minimum required is "2.3.0") -- Found LibPROJ: /usr/lib64/libproj.so (found version "9.6.2") -- Found SQLite3: /usr/include (found version "3.50.2") -- Could NOT find freetype (missing: freetype_DIR) -- For HOST_OS=Fedora ITK_DIR=/usr/lib/cmake/ITK-5.4 -- Compiling source under build tree /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build CMake Deprecation Warning at packages/dcm2niix/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at packages/dcm2niix/ucm.cmake:13 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): packages/dcm2niix/CMakeLists.txt:6 (include) -- Performing Test ARM_CRC -- Performing Test ARM_CRC - Failed -- Performing Test HAS_SSE2 -- Performing Test HAS_SSE2 - Failed -- Build with JNIFTI support, USE_JNIFTI is ON -- For HOST_OS=Fedora dcm2niix ZLIB_IMPLEMENTATION=Miniz ZLIB_ROOT= CMake Deprecation Warning at packages/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.0 dev1 -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- For HOST_OS=Fedora CMAKE_CXX_COMPILER_ID=GNU -- For HOST_OS=Fedora CMAKE_CXX_FLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -- CMAKE_CXX_COMPILER_ID=GNU CMake Warning at talairach_avi/CMakeLists.txt:82 (message): Not linking FORTRAN executables with static libgfortran -- For HOST_OS Fedora CMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle CMake Deprecation Warning at /usr/lib64/cmake/vtk/vtk-use-file-deprecated.cmake:1 (message): The `VTK_USE_FILE` is no longer used starting with 8.90. Call Stack (most recent call first): freeview/CMakeLists.txt:22 (include) -- For HOST_OS=Fedora Build of freeview with ScribblePrompt disabled CMake Deprecation Warning at mris_smooth_intracortical/CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (8.1s) -- Generating done (1.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j8 --verbose Change Dir: '/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 8 [1/1580] /usr/bin/gcc -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -O2 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cmdargs.cpp.o -MF utils/CMakeFiles/utils.dir/cmdargs.cpp.o.d -o utils/CMakeFiles/utils.dir/cmdargs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cmdargs.cpp [160/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/Bruker.cpp.o -MF utils/CMakeFiles/utils.dir/Bruker.cpp.o.d -o utils/CMakeFiles/utils.dir/Bruker.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/Bruker.cpp [161/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/annotation.cpp.o -MF utils/CMakeFiles/utils.dir/annotation.cpp.o.d -o utils/CMakeFiles/utils.dir/annotation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [162/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/autoencoder.cpp.o -MF utils/CMakeFiles/utils.dir/autoencoder.cpp.o.d -o utils/CMakeFiles/utils.dir/autoencoder.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [163/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/corio.cpp.o -MF utils/CMakeFiles/utils.dir/corio.cpp.o.d -o utils/CMakeFiles/utils.dir/corio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/corio.cpp [164/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cmat.cpp.o -MF utils/CMakeFiles/utils.dir/cmat.cpp.o.d -o utils/CMakeFiles/utils.dir/cmat.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cmat.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cmat.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cmat.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [165/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/class_array.cpp.o -MF utils/CMakeFiles/utils.dir/class_array.cpp.o.d -o utils/CMakeFiles/utils.dir/class_array.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/class_array.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/class_array.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/class_array.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [166/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/connectcomp.cpp.o -MF utils/CMakeFiles/utils.dir/connectcomp.cpp.o.d -o utils/CMakeFiles/utils.dir/connectcomp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/connectcomp.cpp [167/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DmyDisableOpenJPEG -DmyEnableJNIFTI -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -static-libstdc++ -static-libgcc -DNDEBUG -static-libstdc++ -static-libgcc -std=c++17 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -w -fPIC -std=gnu89 -MD -MT packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o -MF packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o.d -o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix/nii_dicom_batch.cpp [168/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ctrpoints.cpp.o -MF utils/CMakeFiles/utils.dir/ctrpoints.cpp.o.d -o utils/CMakeFiles/utils.dir/ctrpoints.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ctrpoints.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/ctrpoints.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ctrpoints.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [169/1580] : && /usr/bin/cmake -E rm -f packages/dcm2niix/libdcm2niixfs.a && /usr/bin/ar qc packages/dcm2niix/libdcm2niixfs.a packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/dcm2niix_fswrapper.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/jpg_0XC3.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/ujpeg.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nifti1_io_core.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_foreign.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_ortho.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/cJSON.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/base64.cpp.o && /usr/bin/ranlib packages/dcm2niix/libdcm2niixfs.a && : [170/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/diag.cpp.o -MF utils/CMakeFiles/utils.dir/diag.cpp.o.d -o utils/CMakeFiles/utils.dir/diag.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/diag.cpp [171/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dct.cpp.o -MF utils/CMakeFiles/utils.dir/dct.cpp.o.d -o utils/CMakeFiles/utils.dir/dct.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dct.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/dct.h:35, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dct.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [172/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/diffuse.cpp.o -MF utils/CMakeFiles/utils.dir/diffuse.cpp.o.d -o utils/CMakeFiles/utils.dir/diffuse.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/diffuse.cpp [173/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/colortab.cpp.o -MF utils/CMakeFiles/utils.dir/colortab.cpp.o.d -o utils/CMakeFiles/utils.dir/colortab.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/colortab.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/colortab.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [174/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/density.cpp.o -MF utils/CMakeFiles/utils.dir/density.cpp.o.d -o 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dmatrix.cpp.o -MF utils/CMakeFiles/utils.dir/dmatrix.cpp.o.d -o utils/CMakeFiles/utils.dir/dmatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dmatrix.cpp [176/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cvector.cpp.o -MF utils/CMakeFiles/utils.dir/cvector.cpp.o.d -o utils/CMakeFiles/utils.dir/cvector.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cvector.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cvector.h:19, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cvector.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [177/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto 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-DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cma.cpp.o -MF utils/CMakeFiles/utils.dir/cma.cpp.o.d -o utils/CMakeFiles/utils.dir/cma.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gtm.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp: In function ‘MRI* MRIaqueductSeg(MRI*, MRI*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:2311:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2311 | for(int n=0; n < aqcrs.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:2312:20: warning: comparison of integer expressions of 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/filter.cpp.o -MF utils/CMakeFiles/utils.dir/filter.cpp.o.d -o 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fio.cpp.o -MF utils/CMakeFiles/utils.dir/fio.cpp.o.d -o utils/CMakeFiles/utils.dir/fio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In function ‘int makelocallink(char*, char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1005:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1005 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1030:8: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1030 | chdir(cwd); | ~~~~~^~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In member function ‘int TSV::read(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1047:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1047 | fgets(line,5000,fp); | ~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In function ‘fio_dirname(char const*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:636:26: warning: pointer ‘pname_27’ may be used after ‘free’ [-Wuse-after-free] 636 | if (l == 0 || pname[0] == '/') | ~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:634:9: note: call to ‘free’ here 634 | free(pname); | ~~~~^~~~~~~ [184/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dti.cpp.o -MF utils/CMakeFiles/utils.dir/dti.cpp.o.d -o utils/CMakeFiles/utils.dir/dti.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp: In function ‘MATRIX* DTIloadBVectors(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:907:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 907 | fscanf(fp,"%lf %lf %lf",&gx,&gy,&gz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:912:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 912 | fscanf(fp,"%lf %lf %lf",&gx,&gy,&gz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:918:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 918 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][1])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:920:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 920 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][2])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:922:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 922 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][3])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [185/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dtk.fs.cpp.o -MF utils/CMakeFiles/utils.dir/dtk.fs.cpp.o.d -o utils/CMakeFiles/utils.dir/dtk.fs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dtk.fs.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dtk.fs.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [186/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_cost_function.cpp.o -MF utils/CMakeFiles/utils.dir/fs_cost_function.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_cost_function.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_cost_function.cpp [187/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_lbfgs_subject.cpp.o -MF utils/CMakeFiles/utils.dir/fs_lbfgs_subject.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_lbfgs_subject.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_lbfgs_subject.cpp [188/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_lbfgs_observer.cpp.o -MF utils/CMakeFiles/utils.dir/fs_lbfgs_observer.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_lbfgs_observer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_lbfgs_observer.cpp [189/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_lbfgs.cpp.o -MF utils/CMakeFiles/utils.dir/fs_lbfgs.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_lbfgs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_lbfgs.cpp [190/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_powell.cpp.o -MF utils/CMakeFiles/utils.dir/fs_powell.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_powell.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_powell.cpp [191/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/DICOMRead.cpp.o -MF utils/CMakeFiles/utils.dir/DICOMRead.cpp.o.d -o utils/CMakeFiles/utils.dir/DICOMRead.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp: In function ‘int DumpSiemensAsciiAlt(const char*, FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:2824:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2824 | for(nthchar=0; nthchar < strlen(tmpstr); nthchar++){ | ~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:19: In function ‘sprintf’, inlined from ‘DICOMRead3(char const*, bool, std::vector >, std::allocator > > >**)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:6123:12: /usr/include/bits/stdio2.h:30:34: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘prephitmp_159’ [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [192/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fcd.cpp.o -MF utils/CMakeFiles/utils.dir/fcd.cpp.o.d -o utils/CMakeFiles/utils.dir/fcd.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fcd.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fcd.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fcd.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [193/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o -MF utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o.d -o utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsPrintHelp.cpp [194/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsenv.cpp.o -MF utils/CMakeFiles/utils.dir/fsenv.cpp.o.d -o utils/CMakeFiles/utils.dir/fsenv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsenv.cpp [195/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsinit.cpp.o -MF utils/CMakeFiles/utils.dir/fsinit.cpp.o.d -o utils/CMakeFiles/utils.dir/fsinit.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsinit.cpp [196/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fscnpy.cpp.o -MF utils/CMakeFiles/utils.dir/fscnpy.cpp.o.d -o utils/CMakeFiles/utils.dir/fscnpy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp: In member function ‘void fscnpy::__parse_header_dictionary(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 330 | for (int i = 0; i < __shape.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:356:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 356 | for (int n = 0; n < __shape.size(); n++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:219:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 219 | fread(magic_string, 1, __magic_string_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:228:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fread(&__major_version, 1, 1, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:229:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fread(&__minor_version, 1, 1, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:234:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread(&__header_len, 1, __header_len_bytes[__major_version-1], __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:238:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fread(dict, 1, __header_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:245:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fread(restheader, 1, restheader_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [197/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsglm.cpp.o -MF utils/CMakeFiles/utils.dir/fsglm.cpp.o.d -o utils/CMakeFiles/utils.dir/fsglm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsglm.cpp [198/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fstagsio.cpp.o -MF utils/CMakeFiles/utils.dir/fstagsio.cpp.o.d -o utils/CMakeFiles/utils.dir/fstagsio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fstagsio.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fstagsio.cpp:8: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [199/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fmriutils.cpp.o -MF utils/CMakeFiles/utils.dir/fmriutils.cpp.o.d -o utils/CMakeFiles/utils.dir/fmriutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp: In function ‘MRI* MRIframeMean(MRI*, MRI*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:1687:49: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1687 | if(FrameWeight.size()!=0 && FrameWeight.size()!=vol->nframes){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp: In function ‘MRI* fMRIextractFrames(MRI*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:2418:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2418 | for(int n=0; n < framelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:2435:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2435 | for(int n=0; n < framelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ [200/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o -MF utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o.d -o utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearprior.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcalinearprior.hpp:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearprior.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [201/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsgdf.cpp.o -MF utils/CMakeFiles/utils.dir/fsgdf.cpp.o.d -o utils/CMakeFiles/utils.dir/fsgdf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:68: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘FSGD* gdfRead(const char*, const char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:291:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 291 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:299:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | fscanf(fp,"%d",&version); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘FSGD* gdfReadV1(const char*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:428:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 428 | fscanf(fp,"%s",tag); | ~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:436:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 436 | fscanf(fp,"%d",&version); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:535:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 535 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:560:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:581:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 581 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:611:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 611 | fscanf(fp,"%s",gd->varlabel[m]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:633:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 633 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:635:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 635 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:637:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 637 | fscanf(fp,"%d %d",&gd->fieldcol[m],&gd->datacol[m]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:644:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 644 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:687:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 687 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:715:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 715 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘int gdfCountItemsOnLine(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:961:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 961 | fgets(tmpstr,10000,fp); | ~~~~~^~~~~~~~~~~~~~~~~ [202/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o -MF utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o.d -o utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearnode.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcalinearnode.hpp:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearnode.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [203/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcaboundary.cpp.o -MF utils/CMakeFiles/utils.dir/gcaboundary.cpp.o.d -o utils/CMakeFiles/utils.dir/gcaboundary.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcaboundary.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcaboundary.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcaboundary.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [204/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/getdelim.cpp.o -MF utils/CMakeFiles/utils.dir/getdelim.cpp.o.d -o utils/CMakeFiles/utils.dir/getdelim.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/getdelim.cpp [206/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/getline.cpp.o -MF utils/CMakeFiles/utils.dir/getline.cpp.o.d -o utils/CMakeFiles/utils.dir/getline.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/getline.cpp [207/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcautils.cpp.o -MF utils/CMakeFiles/utils.dir/gcautils.cpp.o.d -o utils/CMakeFiles/utils.dir/gcautils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcautils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcautils.hpp:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcautils.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [208/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o -MF utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamcomputeLabelsLinearCPU.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamcomputeLabelsLinearCPU.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [209/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/geos.cpp.o -MF utils/CMakeFiles/utils.dir/geos.cpp.o.d -o utils/CMakeFiles/utils.dir/geos.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/geos.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/geos.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/geos.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [210/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcsa.cpp.o -MF utils/CMakeFiles/utils.dir/gcsa.cpp.o.d -o utils/CMakeFiles/utils.dir/gcsa.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [211/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o -MF utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o.d -o utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_ic2562.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_ic2562.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [212/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gifti.cpp.o -MF utils/CMakeFiles/utils.dir/gifti.cpp.o.d -o utils/CMakeFiles/utils.dir/gifti.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gifti.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gifti.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gifti.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [213/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gw_utils.cpp.o -MF utils/CMakeFiles/utils.dir/gw_utils.cpp.o.d -o utils/CMakeFiles/utils.dir/gw_utils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_utils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gw_utils.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_utils.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [214/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/hips.cpp.o -MF utils/CMakeFiles/utils.dir/hips.cpp.o.d -o utils/CMakeFiles/utils.dir/hips.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/hips.cpp [215/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o -MF utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorphtestutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorphtestutils.hpp:34, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorphtestutils.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [216/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gtm.cpp.o -MF utils/CMakeFiles/utils.dir/gtm.cpp.o.d -o utils/CMakeFiles/utils.dir/gtm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gtm.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp: In function ‘int MRIgtmSeg(GTMSEG*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 111 | for(int n=0; n < gtmseg->mergesegids.size(); n++) printf("%d ",gtmseg->mergesegids[n]); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:120:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int n=0; n < gtmseg->mergesegids.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [217/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/hippo.cpp.o -MF utils/CMakeFiles/utils.dir/hippo.cpp.o.d -o utils/CMakeFiles/utils.dir/hippo.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/hippo.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/hippo.cpp:5: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [218/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/histo.cpp.o -MF utils/CMakeFiles/utils.dir/histo.cpp.o.d -o utils/CMakeFiles/utils.dir/histo.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/histo.cpp [219/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic12.cpp.o -MF utils/CMakeFiles/utils.dir/ic12.cpp.o.d -o utils/CMakeFiles/utils.dir/ic12.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic12.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic12.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [220/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic163842.cpp.o -MF utils/CMakeFiles/utils.dir/ic163842.cpp.o.d -o utils/CMakeFiles/utils.dir/ic163842.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic163842.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic163842.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [221/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic2562.cpp.o -MF utils/CMakeFiles/utils.dir/ic2562.cpp.o.d -o utils/CMakeFiles/utils.dir/ic2562.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic2562.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic2562.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [222/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic42.cpp.o -MF utils/CMakeFiles/utils.dir/ic42.cpp.o.d -o utils/CMakeFiles/utils.dir/ic42.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic42.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic42.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [223/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/intensity_eig.cpp.o -MF utils/CMakeFiles/utils.dir/intensity_eig.cpp.o.d -o utils/CMakeFiles/utils.dir/intensity_eig.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/intensity_eig.cpp [224/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ipmpar.cpp.o -MF utils/CMakeFiles/utils.dir/ipmpar.cpp.o.d -o utils/CMakeFiles/utils.dir/ipmpar.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ipmpar.cpp [225/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic642.cpp.o -MF utils/CMakeFiles/utils.dir/ic642.cpp.o.d -o utils/CMakeFiles/utils.dir/ic642.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic642.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic642.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [226/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions 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-Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/icosahedron.cpp.o -MF utils/CMakeFiles/utils.dir/icosahedron.cpp.o.d -o utils/CMakeFiles/utils.dir/icosahedron.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/icosahedron.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/icosahedron.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_conform.cpp.o -MF utils/CMakeFiles/utils.dir/mri_conform.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_conform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_conform.cpp [243/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mideface.cpp.o -MF utils/CMakeFiles/utils.dir/mideface.cpp.o.d -o utils/CMakeFiles/utils.dir/mideface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp: In member function ‘MRI* MiDeface::EmbedCode(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 585 | for(int n=0; n < strlen(embedded_code); n++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:588:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 588 | for(int n=0; n < strlen(version); n++) | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp: In member function ‘int MiDeface::EmbedCodeCheck(const MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:610:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for(int n=0; n < strlen(embedded_code); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ [244/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/label.cpp.o -MF utils/CMakeFiles/utils.dir/label.cpp.o.d -o utils/CMakeFiles/utils.dir/label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/label.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [246/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gca.cpp.o -MF utils/CMakeFiles/utils.dir/gca.cpp.o.d -o utils/CMakeFiles/utils.dir/gca.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp: In function ‘GCA_SAMPLE* GCAfindStableSamples(GCA*, int*, int, float, int*, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:30: warning: comparison between two arrays [-Warray-compare] 4960 | if (((means[0] <= min_unknown) || (means[0] >= max_unknown))) /* disabled check */ | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:30: note: use unary ‘+’ which decays operands to pointers or ‘&(means[0])[0] <= &min_unknown[0]’ to compare the addresses /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:59: warning: comparison between two arrays [-Warray-compare] 4960 | if (((means[0] <= min_unknown) || (means[0] >= max_unknown))) /* disabled check */ | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:59: note: use unary ‘+’ which decays operands to pointers or ‘&(means[0])[0] >= &max_unknown[0]’ to compare the addresses In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [247/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamorph.cpp.o -MF utils/CMakeFiles/utils.dir/gcamorph.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamorph.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorph.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorph.cpp:48: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [248/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_level_set.cpp.o -MF utils/CMakeFiles/utils.dir/mri_level_set.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_level_set.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_level_set.cpp [249/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o -MF utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_fastmarching.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_fastmarching.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:24: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [250/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_identify.cpp.o -MF utils/CMakeFiles/utils.dir/mri_identify.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_identify.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_identify.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_identify.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [251/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_tess.cpp.o -MF utils/CMakeFiles/utils.dir/mri_tess.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_tess.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_tess.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_tess.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [252/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriBSpline.cpp.o -MF utils/CMakeFiles/utils.dir/mriBSpline.cpp.o.d -o utils/CMakeFiles/utils.dir/mriBSpline.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriBSpline.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriBSpline.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [253/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriclass.cpp.o -MF utils/CMakeFiles/utils.dir/mriclass.cpp.o.d -o utils/CMakeFiles/utils.dir/mriclass.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriclass.cpp [254/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mricurv.cpp.o -MF utils/CMakeFiles/utils.dir/mricurv.cpp.o.d -o utils/CMakeFiles/utils.dir/mricurv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mricurv.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri_topology.h:17, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mricurv.h:17, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mricurv.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [255/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri2.cpp.o -MF utils/CMakeFiles/utils.dir/mri2.cpp.o.d -o utils/CMakeFiles/utils.dir/mri2.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIrescaleBySeg(MRI*, MRI*, std::vector, double, MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:275:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | for(int n=0; n < ids.size(); n++){ | ~~^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRImax(MRI*, MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1821:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1821 | for (unsigned int f = 0; f < frames; f++) { | ~~^~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1822:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1822 | for (unsigned int c = 0; c < cols; c++) { | ~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1823:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1823 | for (unsigned int r = 0; r < rows; r++) { | ~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1824:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1824 | for (unsigned int s = 0; s < slices; s++) { | ~~^~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIvolTopoFix(MRI*, int, MRI*, int, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:5838:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5838 | for(int k=1; k < crs.size(); k++) | ~~^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int BinarizeMRI::dump(MRI*, const MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:6627:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6627 | for(int n=0; n < matchlist.size(); n++) fprintf(m_debugfp,"%d ",matchlist[n]); | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int BinarizeMRI::qualifies(const MRI*, const MRI*, int, int, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:6679:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6679 | for(int n=0; n < matchlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRItpfpfnSeg(MRI*, MRI*, std::vector, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7568 | for(int n=0; n < segids.size(); n++) printf("%d ",segids[n]); | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIcropAroundCRS(MRI*, double*, int*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7662:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7662 | for(int n=0; n < iKeep.size(); n++) printf("%d ",iKeep[n]); | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7734:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7734 | for(int n=0; n < iKeep.size(); n++) if(val == iKeep[n]) hit = 1; | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int SpatialCor::read(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8032:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8032 | fscanf(fp,"%*s %d",&this->nmask); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8033:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8033 | fscanf(fp,"%*s %lf",&this->xsum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8034:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8034 | fscanf(fp,"%*s %lf",&this->x2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8035:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8035 | fscanf(fp,"%*s %lf",&this->dx2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8036:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8036 | fscanf(fp,"%*s %lf",&this->xmn); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8037:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8037 | fscanf(fp,"%*s %lf",&this->ysum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8038:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8038 | fscanf(fp,"%*s %lf",&this->y2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8039:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8039 | fscanf(fp,"%*s %lf",&this->dy2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8040:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8040 | fscanf(fp,"%*s %lf",&this->ymn); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8041:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8041 | fscanf(fp,"%*s %lf",&this->xysum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8042:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8042 | fscanf(fp,"%*s %lf",&this->num); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8043:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8043 | fscanf(fp,"%*s %lf",&this->den); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8044:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8044 | fscanf(fp,"%*s %lf",&this->pcc); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [256/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRIio_old.cpp.o -MF utils/CMakeFiles/utils.dir/MRIio_old.cpp.o.d -o utils/CMakeFiles/utils.dir/MRIio_old.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRIio_old.cpp [257/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrihisto.cpp.o -MF utils/CMakeFiles/utils.dir/mrihisto.cpp.o.d -o utils/CMakeFiles/utils.dir/mrihisto.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp: In function ‘MRIhistoEqualizeRegion(MRI*, MRI*, int, MRI_REGION*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:461:28: warning: dangling pointer ‘region_2’ to ‘tmp’ may be used [-Wdangling-pointer=] 461 | MRIgetEqualizeHistoRegion(mri_src, histo_eq, low, region, 1); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:453:16: note: ‘tmp’ declared here 453 | MRI_REGION tmp; | ^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:462:38: warning: dangling pointer ‘region_2’ to ‘tmp’ may be used [-Wdangling-pointer=] 462 | mri_dst = MRIapplyHistogramToRegion(mri_src, mri_dst, histo_eq, region); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:453:16: note: ‘tmp’ declared here 453 | MRI_REGION tmp; | ^~~ [258/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_topology.cpp.o -MF utils/CMakeFiles/utils.dir/mri_topology.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri_topology.h:17, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [259/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriflood.cpp.o -MF utils/CMakeFiles/utils.dir/mriflood.cpp.o.d -o utils/CMakeFiles/utils.dir/mriflood.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriflood.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriflood.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [260/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriprob.cpp.o -MF utils/CMakeFiles/utils.dir/mriprob.cpp.o.d -o utils/CMakeFiles/utils.dir/mriprob.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriprob.cpp [261/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrinorm.cpp.o -MF utils/CMakeFiles/utils.dir/mrinorm.cpp.o.d -o utils/CMakeFiles/utils.dir/mrinorm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrinorm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/ctrpoints.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrinorm.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [262/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o -MF utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_compVolFrac.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mris_compVolFrac.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_compVolFrac.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [263/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrifilter.cpp.o -MF utils/CMakeFiles/utils.dir/mrifilter.cpp.o.d -o utils/CMakeFiles/utils.dir/mrifilter.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrifilter.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrifilter.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [264/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mripolv.cpp.o -MF utils/CMakeFiles/utils.dir/mripolv.cpp.o.d -o utils/CMakeFiles/utils.dir/mripolv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mripolv.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mripolv.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [265/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisegment.cpp.o -MF utils/CMakeFiles/utils.dir/mrisegment.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisegment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisegment.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisegment.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [266/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o -MF utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_fastmarching.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_fastmarching.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:24: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [267/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrimorph.cpp.o -MF utils/CMakeFiles/utils.dir/mrimorph.cpp.o.d -o utils/CMakeFiles/utils.dir/mrimorph.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrimorph.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrimorph.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [268/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri.cpp.o -MF utils/CMakeFiles/utils.dir/mri.cpp.o.d -o utils/CMakeFiles/utils.dir/mri.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/timer.h:4, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/romp_support.h:47, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:32: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp: In member function ‘void MRI::loadITKImage(itk::Image::Pointer, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:15: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:41: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:68: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [269/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o -MF utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o.d -o utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/MRISrigidBodyAlignGlobal.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp: In function ‘MRISrigidBodyAlignGlobal_findMinSSE(double*, double*, double*, double*, MRIS*, INTEGRATION_PARMS*, float, float, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:530:52: warning: array subscript 1 is above array bounds of ‘struct Center[1]’ [-Warray-bounds=] 530 | if (outCenters[oci].center_sse > outCenters[i].center_sse) oci = i; | ~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:154:11: note: while referencing ‘outCenters’ 154 | Centers outCenters; | ^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:475:62: warning: array subscript 1 is above array bounds of ‘struct Center[1]’ [-Warray-bounds=] 475 | if (outCenters[oci].center_sse < outCenters[i].center_sse) oci = i; | ~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:154:11: note: while referencing ‘outCenters’ 154 | Centers outCenters; | ^~~~~~~~~~ [270/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o -MF utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_sphshapepvf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mris_sphshapepvf.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_sphshapepvf.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [271/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrishash.cpp.o -MF utils/CMakeFiles/utils.dir/mrishash.cpp.o.d -o utils/CMakeFiles/utils.dir/mrishash.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrishash.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrishash.cpp:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [272/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriio.cpp.o -MF utils/CMakeFiles/utils.dir/mriio.cpp.o.d -o utils/CMakeFiles/utils.dir/mriio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/autoencoder.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:51: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/error.h:6, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrishash.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:54: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp: In function ‘ReadAnalyzeHeader(char const*, int*, int*, int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:4934:28: warning: pointer ‘hdr_25’ used after ‘free’ [-Wuse-after-free] 4934 | hdr->dime.datatype)); | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:4928:9: note: call to ‘free’ here 4928 | free(hdr); | ~~~~^~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp: In function ‘MRIwrite(MRI*, char const*, std::vector >*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:1353:30: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1353 | sprintf(tmp, "%s%s.%s", fname_copy, ((*mriVector)[n])->fnamePostFixes, ext); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:27: In function ‘sprintf’, inlined from ‘MRIwrite(MRI*, char const*, std::vector >*, int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:1353:16: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [273/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o -MF utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o.d -o utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:8: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp: In member function ‘void GradUnwarp::printCoeff()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:334:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 334 | for (; i < strlen(arrs); i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp: In member function ‘void GradUnwarp::read_siemens_coeff(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:106:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:112:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 112 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:121:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 121 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:130:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:137:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 137 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [274/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriset.cpp.o -MF utils/CMakeFiles/utils.dir/mriset.cpp.o.d -o utils/CMakeFiles/utils.dir/mriset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp: In function ‘MRI* MRIerodeAndReplaceLabel(MRI*, int, int, int, int, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:720:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 720 | for(int n = 0; n < edgecrs.size(); n++){ | ~~^~~~~~~~~~~~~~~~ [275/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisp.cpp.o -MF utils/CMakeFiles/utils.dir/mrisp.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisp.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [276/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:61, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:60: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [277/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_base.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:61, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_base.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:60: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [278/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_compute_dxyz.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_compute_dxyz.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_compute_dxyz.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [279/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [280/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io_stl.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io_stl.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [281/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [282/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties_faster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties_faster.cpp:3: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [283/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.h:3, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int mrisReadGeoFilePositions(MRI_SURFACE*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3506:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3506 | fscanf(fp, "%e %e %e", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3509:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3509 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int mrisReadTriangleFilePositions(MRI_SURFACE*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5452:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5452 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5453:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5453 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* MRISreadVTK(MRI_SURFACE*, const char*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:2961:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2961 | fscanf(fp, "%f %f %f", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3017:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3017 | fscanf(fp, "%d ", &facepoints); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3025:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3025 | fscanf(fp, "%d", &vno); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRIS* MRISreadOverAlloc_old(const char*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:4052:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4052 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadAsciiFile(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3361:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3361 | fscanf(fp, "%f %f %f %d\n", &x, &y, &z, &rip); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3372:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3372 | fscanf(fp, "%d ", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3383:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3383 | fscanf(fp, "%d\n", &rip); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadGeoFile(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3436:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3436 | fscanf(fp, "%e %e %e", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3439:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3439 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3446:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3446 | fscanf(fp, "%d ", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3454:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3454 | fscanf(fp, "-%d\n", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadTriangleFile(const char*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5510:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5510 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5511:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5511 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5599:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5599 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRIS* __MRISreadQuadrangleFile(const char*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:6474:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6474 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘SMALL_SURFACE* mrisReadTriangleFileVertexPositionsOnly(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5399 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5400:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5400 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int MRISreadDecimation(MRI_SURFACE*, char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5746:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5746 | fscanf(fptr, "%*s"); | ~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5747:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5747 | fscanf(fptr, "%d", &d); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5751:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5751 | fscanf(fptr, "%d", &d); | ~~~~~~^~~~~~~~~~~~~~~~ [284/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_project.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_project.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_project.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [285/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sphere_interp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_sphere_interp.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sphere_interp.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [286/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [287/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [288/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp: In function ‘int MRISfindNeighborsAtVertex_new(MRIS*, int, int, size_t, int*, int*, bool)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:1405:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1405 | if (neighborCount > listCapacity) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp: In function ‘int MRISisNextSpatOrderedNeighbor(MRIS*, int, int, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:3399:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3399 | for(int n=0; n < vnolist.size(); n++) if(vnotest == vnolist[n]) return(0); | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/const.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:24: In member function ‘FixedSizeArray::operator[](unsigned long)’, inlined from ‘MRISgetSpatOrderedNeighbors(MRIS*, int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:3369:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h:145:55: warning: array subscript 4 is above array bounds of ‘int[3]’ [-Warray-bounds=] 145 | T& operator[](size_t i) { return v[i]; } | ~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h: In function ‘MRISgetSpatOrderedNeighbors(MRIS*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h:155:7: note: while referencing ‘v’ 155 | T v[SIZE]; | ^ [289/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriTransform.cpp.o -MF utils/CMakeFiles/utils.dir/mriTransform.cpp.o.d -o utils/CMakeFiles/utils.dir/mriTransform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriTransform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriTransform.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [290/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o -MF utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o.d -o utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISurfOverlay.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/MRISurfOverlay.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISurfOverlay.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [291/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_sseTerms.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp: In function ‘double MRISpointSetLocationError(MRIS*, double, json*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp:1939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1939 | for(int i = 0; i < PointSet["points"].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [292/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrivoxel.cpp.o -MF utils/CMakeFiles/utils.dir/mrivoxel.cpp.o.d -o utils/CMakeFiles/utils.dir/mrivoxel.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrivoxel.cpp [293/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_vals.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_vals.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [294/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp: In member function ‘int AutoDetGWStats::ReadStream(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8057:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8057 | fscanf(fp,"%*s %d",&hemicode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8058:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8058 | fscanf(fp,"%*s %lf",&white_border_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8059:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8059 | fscanf(fp,"%*s %lf",&white_border_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8060:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8060 | fscanf(fp,"%*s %lf",&white_outside_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8061:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8061 | fscanf(fp,"%*s %lf",&white_inside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8062:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8062 | fscanf(fp,"%*s %lf",&white_outside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8063:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8063 | fscanf(fp,"%*s %lf",&pial_border_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8064:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8064 | fscanf(fp,"%*s %lf",&pial_border_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8065:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8065 | fscanf(fp,"%*s %lf",&pial_outside_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8066:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8066 | fscanf(fp,"%*s %lf",&pial_inside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8067:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8067 | fscanf(fp,"%*s %lf",&pial_outside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8068:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8068 | fscanf(fp,"%*s %d\n",&use_mode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8069:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8069 | fscanf(fp,"%*s %f",&variablesigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8070:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8070 | fscanf(fp,"%*s %lf",&std_scale); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8071:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8071 | fscanf(fp,"%*s %f",&adWHITE_MATTER_MEAN); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8072:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8072 | fscanf(fp,"%*s %f",&MAX_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8073:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8073 | fscanf(fp,"%*s %f",&MIN_BORDER_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8074:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8074 | fscanf(fp,"%*s %f",&MAX_BORDER_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8075:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8075 | fscanf(fp,"%*s %f",&MAX_GRAY); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8076:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8076 | fscanf(fp,"%*s %f",&MID_GRAY); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8077:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8077 | fscanf(fp,"%*s %f",&MIN_GRAY_AT_CSF_BORDER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8078:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8078 | fscanf(fp,"%*s %f",&MAX_GRAY_AT_CSF_BORDER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8079:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8079 | fscanf(fp,"%*s %f",&MIN_CSF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8080:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8080 | fscanf(fp,"%*s %f",&adMAX_CSF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8081:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8081 | fscanf(fp,"%*s %f",&white_mean); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8082:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8082 | fscanf(fp,"%*s %f",&white_mode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8083:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8083 | fscanf(fp,"%*s %f",&white_std); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8084:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8084 | fscanf(fp,"%*s %f",&gray_mean); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8085:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8085 | fscanf(fp,"%*s %f",&gray_mode ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8086:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8086 | fscanf(fp,"%*s %f",&gray_std); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8087:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8087 | fscanf(fp,"%*s %f",&min_border_white); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8088:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8088 | fscanf(fp,"%*s %f",&max_border_white); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8089:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8089 | fscanf(fp,"%*s %f",&min_gray_at_white_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8090:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8090 | fscanf(fp,"%*s %f",&max_gray); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8091:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8091 | fscanf(fp,"%*s %f",&min_gray_at_csf_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8092:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8092 | fscanf(fp,"%*s %f",&max_gray_at_csf_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8093:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8093 | fscanf(fp,"%*s %f",&min_csf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8094:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8094 | fscanf(fp,"%*s %f",&max_csf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8095:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8095 | fscanf(fp,"%*s %lf",&max_gray_scale); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8096:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8096 | fscanf(fp,"%*s %lf",&max_scale_down); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [295/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pgmstubs.cpp.o -MF utils/CMakeFiles/utils.dir/pgmstubs.cpp.o.d -o utils/CMakeFiles/utils.dir/pgmstubs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pgmstubs.cpp [296/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pdf.cpp.o -MF utils/CMakeFiles/utils.dir/pdf.cpp.o.d -o utils/CMakeFiles/utils.dir/pdf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pdf.cpp [297/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisutils.cpp.o -MF utils/CMakeFiles/utils.dir/mrisutils.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRIS* MRISaverageSurfaces(std::vector, MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:4182:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4182 | for(int n=1; n < surfs.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRIS* MRISupsampleSplit(MRIS*, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:3872:10: warning: ignoring return value of ‘int mkstemp(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3872 | mkstemp(tmpfile); | ~~~~~~~^~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRISfindPath(int*, int, int, int*, int*, MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1881:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1881 | check[closest_vno] = FALSE; /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1841:25: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ 1841 | check = (char *)calloc(mris->nvertices, sizeof(char)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [298/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/offset.cpp.o -MF utils/CMakeFiles/utils.dir/offset.cpp.o.d -o utils/CMakeFiles/utils.dir/offset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/offset.cpp [301/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/path.cpp.o -MF utils/CMakeFiles/utils.dir/path.cpp.o.d -o utils/CMakeFiles/utils.dir/path.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/path.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp: In function ‘PathReadMany(char*, int*, PATH***)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:165:29: warning: pointer ‘path_171’ may be used after ‘free’ [-Wuse-after-free] 165 | if (path) free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:163:19: note: call to ‘free’ here 163 | free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:183:29: warning: pointer ‘path_171’ may be used after ‘free’ [-Wuse-after-free] 183 | if (path) free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:181:19: note: call to ‘free’ here 181 | free(path); | ~~~~^~~~~~ [302/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/numerics.cpp.o -MF utils/CMakeFiles/utils.dir/numerics.cpp.o.d -o utils/CMakeFiles/utils.dir/numerics.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/numerics.cpp [303/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp:17: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [304/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rbf.cpp.o -MF utils/CMakeFiles/utils.dir/rbf.cpp.o.d -o utils/CMakeFiles/utils.dir/rbf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rbf.cpp [305/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/warpfield.cpp.o -MF utils/CMakeFiles/utils.dir/warpfield.cpp.o.d -o utils/CMakeFiles/utils.dir/warpfield.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/warpfield.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/warpfield.cpp:6: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [306/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/region.cpp.o -MF utils/CMakeFiles/utils.dir/region.cpp.o.d -o utils/CMakeFiles/utils.dir/region.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/region.cpp [307/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/randomfields.cpp.o -MF utils/CMakeFiles/utils.dir/randomfields.cpp.o.d -o utils/CMakeFiles/utils.dir/randomfields.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [308/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/registerio.cpp.o -MF utils/CMakeFiles/utils.dir/registerio.cpp.o.d -o utils/CMakeFiles/utils.dir/registerio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/registerio.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/registerio.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [309/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/realm.cpp.o -MF utils/CMakeFiles/utils.dir/realm.cpp.o.d -o utils/CMakeFiles/utils.dir/realm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/realm.h:54, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [310/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/retinotopy.cpp.o -MF utils/CMakeFiles/utils.dir/retinotopy.cpp.o.d -o utils/CMakeFiles/utils.dir/retinotopy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [311/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rbm.cpp.o -MF utils/CMakeFiles/utils.dir/rbm.cpp.o.d -o utils/CMakeFiles/utils.dir/rbm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rbm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/rbm.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rbm.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [312/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rforest.cpp.o -MF utils/CMakeFiles/utils.dir/rforest.cpp.o.d -o utils/CMakeFiles/utils.dir/rforest.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rforest.cpp [313/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rgb.cpp.o -MF utils/CMakeFiles/utils.dir/rgb.cpp.o.d -o utils/CMakeFiles/utils.dir/rgb.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rgb.cpp [314/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/selxavgio.cpp.o -MF utils/CMakeFiles/utils.dir/selxavgio.cpp.o.d -o utils/CMakeFiles/utils.dir/selxavgio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp: In function ‘SXADAT* ld_sxadat(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:142:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 142 | fscanf(fp, "%*s %f", &sxa->TR); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:143:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 143 | fscanf(fp, "%*s %f", &sxa->TimeWindow); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:144:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 144 | fscanf(fp, "%*s %f", &sxa->TPreStim); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:145:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fscanf(fp, "%*s %d", &sxa->Nc); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:146:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | fscanf(fp, "%*s %d", &sxa->Nh); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:153:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fscanf(fp, "%*s %f", &sxa->TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:154:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fscanf(fp, "%*s %f", &sxa->DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:156:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:158:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | for (n = 0; n < sxa->Nc; n++) fscanf(fp, "%d", &sxa->npercond[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:159:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 159 | fscanf(fp, "%*s %d", &sxa->nruns); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:160:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 160 | fscanf(fp, "%*s %d", &sxa->ntp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:161:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fscanf(fp, "%*s %d", &sxa->nrows); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:162:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fscanf(fp, "%*s %d", &sxa->ncols); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:163:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 163 | fscanf(fp, "%*s %d", &sxa->nskip); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:164:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fscanf(fp, "%*s %d", &sxa->DTOrder); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:165:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 165 | fscanf(fp, "%*s %f", &sxa->RescaleFactor); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:166:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 166 | fscanf(fp, "%*s %f", &sxa->HanningRadius); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:167:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | fscanf(fp, "%*s %d", &sxa->nNoiseAC); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:168:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | fscanf(fp, "%*s %d", &sxa->BrainAirSeg); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:169:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 169 | fscanf(fp, "%*s %d", &sxa->GammaFit); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:171:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:172:47: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 172 | for (n = 0; n < sxa->GammaFit; n++) fscanf(fp, "%f", &sxa->gfDelta[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:173:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 173 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:174:47: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | for (n = 0; n < sxa->GammaFit; n++) fscanf(fp, "%f", &sxa->gfTau[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:176:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fscanf(fp, "%*s %d", &sxa->NullCondId); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:180:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:185:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | fscanf(fp, "%f", &sxa->SumXtX[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:192:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 192 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:197:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 197 | fscanf(fp, "%f", &sxa->hCovMtx[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:202:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:204:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | for (n = 0; n < sxa->Nc; n++) fscanf(fp, "%d", &sxa->CondIdMap[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [315/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/romp_support.cpp.o -MF utils/CMakeFiles/utils.dir/romp_support.cpp.o.d -o utils/CMakeFiles/utils.dir/romp_support.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/romp_support.cpp [316/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/sig.cpp.o -MF utils/CMakeFiles/utils.dir/sig.cpp.o.d -o utils/CMakeFiles/utils.dir/sig.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/sig.cpp [317/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rfa.cpp.o -MF utils/CMakeFiles/utils.dir/rfa.cpp.o.d -o utils/CMakeFiles/utils.dir/rfa.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfa.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfa.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [318/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/resample.cpp.o -MF utils/CMakeFiles/utils.dir/resample.cpp.o.d -o utils/CMakeFiles/utils.dir/resample.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/resample.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/resample.cpp:67: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [319/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rfutils.cpp.o -MF utils/CMakeFiles/utils.dir/rfutils.cpp.o.d -o utils/CMakeFiles/utils.dir/rfutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfutils.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [320/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/signa.cpp.o -MF utils/CMakeFiles/utils.dir/signa.cpp.o.d -o utils/CMakeFiles/utils.dir/signa.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp: In function ‘MRI* signaRead(char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp:300:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 300 | fread(&MRISseq_vox(mri, 0, 0, slice, frame), sizeof(short), mri->width * mri->height, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp:305:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 305 | fread(&MRISvox(mri, 0, 0, slice), sizeof(short), mri->width * mri->height, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [321/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pointset.cpp.o -MF utils/CMakeFiles/utils.dir/pointset.cpp.o.d -o utils/CMakeFiles/utils.dir/pointset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pointset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pointset.cpp:10: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [322/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/svm.cpp.o -MF utils/CMakeFiles/utils.dir/svm.cpp.o.d -o utils/CMakeFiles/utils.dir/svm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/svm.cpp [323/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tags.cpp.o -MF utils/CMakeFiles/utils.dir/tags.cpp.o.d -o utils/CMakeFiles/utils.dir/tags.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp: In function ‘int TAGread(FILE*, void*, long long int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:77:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 77 | fread(buf, sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp: In function ‘MATRIX* TAGreadMatrix(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:186:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fscanf(fp, "%s", buf); // get past "AutoAlign"/"Matrix" string | ~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:189:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | fscanf(fp, "%f", &(M->rptr[r][c])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [324/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/timer.cpp.o -MF utils/CMakeFiles/utils.dir/timer.cpp.o.d -o utils/CMakeFiles/utils.dir/timer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/timer.cpp [325/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/talairachex.cpp.o -MF utils/CMakeFiles/utils.dir/talairachex.cpp.o.d -o utils/CMakeFiles/utils.dir/talairachex.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/talairachex.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/talairachex.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/talairachex.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/talairachex.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [326/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tukey.cpp.o -MF utils/CMakeFiles/utils.dir/tukey.cpp.o.d -o utils/CMakeFiles/utils.dir/tukey.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tukey.cpp [327/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tritri.cpp.o -MF utils/CMakeFiles/utils.dir/tritri.cpp.o.d -o utils/CMakeFiles/utils.dir/tritri.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tritri.cpp [328/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/surfcluster.cpp.o -MF utils/CMakeFiles/utils.dir/surfcluster.cpp.o.d -o utils/CMakeFiles/utils.dir/surfcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/resample.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [329/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tfce.cpp.o -MF utils/CMakeFiles/utils.dir/tfce.cpp.o.d -o utils/CMakeFiles/utils.dir/tfce.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/surfcluster.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp: In member function ‘MRI* TFCE::voxcor(MRI*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:53:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 53 | for(n=0; n < maxstatlist.size(); n++) if(v < maxstatlist[n]) break; | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:55:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 55 | if(n!=maxstatlist.size()){ | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp: In member function ‘int TFCE::write_vector_double(char*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:81:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 81 | for(int n=0; n TFCE::read_vector_double(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:101:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | fscanf(fp,"%lf",&v); | ~~~~~~^~~~~~~~~~~~~ [330/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/surfgrad.cpp.o -MF utils/CMakeFiles/utils.dir/surfgrad.cpp.o.d -o utils/CMakeFiles/utils.dir/surfgrad.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRISedgeLengthCost(MRIS*, double, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1523:19: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 1523 | tx[e->vtxno[0]] += gradv0->rptr[1][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:11: note: ‘tx’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1527:19: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 1527 | ty[e->vtxno[1]] += gradv1->rptr[2][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:15: note: ‘ty’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1528:19: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 1528 | tz[e->vtxno[1]] += gradv1->rptr[3][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:19: note: ‘tz’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRISedgeAngleCost(MRIS*, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1743:28: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 1743 | tx[e->vtxno[wrtvtxno]] += gradv->rptr[1][1]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:11: note: ‘tx’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1744:28: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 1744 | ty[e->vtxno[wrtvtxno]] += gradv->rptr[1][2]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:15: note: ‘ty’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1745:28: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 1745 | tz[e->vtxno[wrtvtxno]] += gradv->rptr[1][3]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:19: note: ‘tz’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRIScornerDotCost(MRIS*, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2533:17: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 2533 | tx[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][1]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:11: note: ‘tx’ was declared here 2495 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2534:17: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 2534 | ty[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][2]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:15: note: ‘ty’ was declared here 2495 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2535:17: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 2535 | tz[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][3]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:19: note: ‘tz’ was declared here 2495 | double *tx,*ty,*tz; | ^~ [331/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/vertexRotator.cpp.o -MF utils/CMakeFiles/utils.dir/vertexRotator.cpp.o.d -o utils/CMakeFiles/utils.dir/vertexRotator.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/vertexRotator.cpp [332/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/version.cpp.o -MF utils/CMakeFiles/utils.dir/version.cpp.o.d -o utils/CMakeFiles/utils.dir/version.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/version.cpp [333/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/stats.cpp.o -MF utils/CMakeFiles/utils.dir/stats.cpp.o.d -o utils/CMakeFiles/utils.dir/stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘STAT_TABLE* LoadStatTableFS(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:70:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | fgets(tmpstr, 100000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:91:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:96:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:106:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘STAT_TABLE* InitStatTableFromMRI(MRI*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:371:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fgets(tmpstr, 100000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:396:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 396 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:401:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 401 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:407:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:409:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fgets(tmpstr, 100000, fp); // skip till end of line | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘SV* StatReadVolume(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:508:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fscanf(fp, "%*s %f", &TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:509:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 509 | fscanf(fp, "%*s %d", &DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:579:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 579 | fscanf(fp, "%d %d %d", &width, &height, &nframes); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:605:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 605 | fscanf(fp, "%d %d %d", &width, &height, &nframes); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘SV* StatReadVolume2(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:772:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 772 | fscanf(fp, "%*s %f", &TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:773:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 773 | fscanf(fp, "%*s %d", &DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [334/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/xDebug.cpp.o -MF utils/CMakeFiles/utils.dir/xDebug.cpp.o.d -o utils/CMakeFiles/utils.dir/xDebug.cpp.o -c 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/xTypes.cpp.o -MF utils/CMakeFiles/utils.dir/xTypes.cpp.o.d -o utils/CMakeFiles/utils.dir/xTypes.cpp.o -c 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/xVoxel.cpp.o -MF utils/CMakeFiles/utils.dir/xVoxel.cpp.o.d -o utils/CMakeFiles/utils.dir/xVoxel.cpp.o -c 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/vlabels.cpp.o -MF utils/CMakeFiles/utils.dir/vlabels.cpp.o.d -o utils/CMakeFiles/utils.dir/vlabels.cpp.o -c 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/utils.cpp.o -MF utils/CMakeFiles/utils.dir/utils.cpp.o.d -o utils/CMakeFiles/utils.dir/utils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp: In function ‘char* GetNthItemFromString(const char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1323:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1323 | if (nth >= tokens.size()) { | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp: In function ‘int* GetMemUsage(int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1623:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1623 | if (!strcasecmp(tag, "VmSize:")) fscanf(fp, "%d", &u[0]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1624:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1624 | if (!strcasecmp(tag, "VmPeak:")) fscanf(fp, "%d", &u[1]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1625:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1625 | if (!strcasecmp(tag, "VmRSS:")) fscanf(fp, "%d", &u[2]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1626:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1626 | if (!strcasecmp(tag, "VmData:")) fscanf(fp, "%d", &u[3]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1627:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1627 | if (!strcasecmp(tag, "VmStk:")) fscanf(fp, "%d", &u[4]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1628:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1628 | fgets(tag, 499, fp); | ~~~~~^~~~~~~~~~~~~~ [339/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ventfix.cpp.o -MF utils/CMakeFiles/utils.dir/ventfix.cpp.o.d -o utils/CMakeFiles/utils.dir/ventfix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/volcluster.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/ventfix.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp:8: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp: In static member function ‘static MRI* VentFix::ExpandSegIndices(MRI*, int, MRI*, int, int, int, int*, fsPointSet&, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp:164:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 164 | for(int n=0; n < idx.size(); n++){ | ~~^~~~~~~~~~~~ [340/1580] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/targetpointset.cpp.o -MF utils/CMakeFiles/utils.dir/targetpointset.cpp.o.d -o utils/CMakeFiles/utils.dir/targetpointset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::PruneByAngle()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::PruneByDistance()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:62:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 62 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::WriteAsPatch(const char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:138:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for(int n=0; n < vtxlist.size(); n++) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘MRI* SurfacePointSet::MakeMask()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:166:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘double SurfacePointSet::CostAndGrad(double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:183:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 183 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::Print(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:207:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 207 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘fsPointSet SurfacePointSet::VerticesToPointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:224:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 224 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘fsPointSet SurfacePointSet::ConvertToPointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:245:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::MapPointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:292:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 292 | for(int i = 0; i < PointSet["points"].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:334:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 334 | for(int n=0; n < m_shl.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 348 | for(int n=0; n < psvtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 354 | for(int k=0; k < psvtxlist.size(); k++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:387:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 387 | for(int n=psvtxlist.size(); n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:398:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for(int n=0; n < vtxlist.size(); n++) surf->vertices[vtxlist[n]].val = 0; | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:410:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 410 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:430:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 430 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In destructor ‘SurfacePointSet::~SurfacePointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:462:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkRGBATransferFunction.cxx [391/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/transform.cpp.o -MF utils/CMakeFiles/utils.dir/transform.cpp.o.d -o utils/CMakeFiles/utils.dir/transform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In function ‘double* SegRegCost(MRI*, MRI*, double*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4692:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4692 | for (unsigned int c = 0; c < f->width; c++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4693:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4693 | for (unsigned int r = 0; r < f->height; r++) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4694:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4694 | for (unsigned int s = 0; s < f->depth; s++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In member function ‘int RegLandmarks::WriteCoords(const char*, const LTA*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:5630:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5630 | for(int n=0; n < sxyz.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In member function ‘fsPointSet RegLandmarks::Coords2PointSet(const LTA*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:5649:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5649 | for(int n=0; n < sxyz.size(); n++){ | ~~^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In function ‘LTA* ltaReadFileEx(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:3138:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3138 | fscanf(fp, "mean = %f %f %f\n", <->x0, <->y0, <->z0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:3139:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3139 | fscanf(fp, "sigma = %f\n", <->sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [392/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/voxlist.cpp.o -MF utils/CMakeFiles/utils.dir/voxlist.cpp.o.d -o utils/CMakeFiles/utils.dir/voxlist.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [393/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/fiducials_correction_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/fiducials_correction_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/2481f2b689cb15c7271aff651a0dc226ea2eb5865ba5cb821cd43523e303eec8.d [394/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/fiducials_calibration_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_calibration /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/fiducials_calibration_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/3e40d0f9879e06dd1484ce2f94aefd3936c4b0b4fc58915c4d87194db063c210.d [395/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/gauss_4dfp.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/gauss_4dfp.dir/Fortran.dd @talairach_avi/CMakeFiles/gauss_4dfp.dir/Fortran.dd.rsp [396/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/imgreg_4dfp.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/imgreg_4dfp.dir/Fortran.dd @talairach_avi/CMakeFiles/imgreg_4dfp.dir/Fortran.dd.rsp [397/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Fortran.dd @talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Fortran.dd.rsp [398/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/compute_vox2vox.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/compute_vox2vox.dir/Fortran.dd @talairach_avi/CMakeFiles/compute_vox2vox.dir/Fortran.dd.rsp [399/1580] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkInflatePolyData.cxx [400/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration_autogen.dir/AutoRcc_fiducials_calibration_EWIEGA46WW_Info.json Release [401/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/38c938f55bc703117a336a8fe86aff68d980adecf464efdfde09dce8c26878f2.d [402/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction_autogen.dir/AutoRcc_fiducials_correction_EWIEGA46WW_Info.json Release [403/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/CMakeFiles/connected_components_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/connected_components_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/connected_components /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/connected_components_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/53dc05ccc0d917a19bc936c42050e44d807d3c2461d3f1bea9f7c61e976d801c.d [404/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/CMakeFiles/connected_components_autogen.dir/AutoRcc_connected_components_EWIEGA46WW_Info.json Release [405/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction_autogen.dir/AutoRcc_retrospective_correction_EWIEGA46WW_Info.json Release [406/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool/CMakeFiles/diffusion_tool_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool/diffusion_tool_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/diffusion_tool /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool/diffusion_tool_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/d9a49982b553d8b8199ae87e10e40c24a69c3cdc22928ce8b8948cd7b5a38fea.d [407/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/CMakeFiles/mask_extraction_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/164897b66e4aec5b6a36bd120d7b660c1400d94f5acb82330d898b6485f7e2ef.d [408/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/CMakeFiles/mask_extraction_autogen.dir/AutoRcc_mask_extraction_EWIEGA46WW_Info.json Release [409/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecContrast.cxx [410/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/CMakeFiles/dissection_photo_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/aac7bed2f5ec8d890886c008a1885e585ffc6f8ac62b40366e33acb504adb742.d [411/1580] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkRGBAColorTransferFunction.cxx [412/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/CMakeFiles/dissection_photo_autogen.dir/AutoRcc_dissection_photo_EWIEGA46WW_Info.json Release [413/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/CMakeFiles/nmovie_qt_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/nmovie_qt /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/fc51d5751b252581100606b4435a12abff6014d0c814daa5231063fb244dacee.d [414/1580] : && /usr/bin/cmake -E rm -f vtkutils/libvtkutils.a && /usr/bin/ar qc vtkutils/libvtkutils.a vtkutils/CMakeFiles/vtkutils.dir/vtkFreesurferLookupTable.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkArrowPipeline.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o && /usr/bin/ranlib vtkutils/libvtkutils.a && : [415/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecFactor.cxx [416/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecGlmFitResults.cxx [417/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/volcluster.cpp.o -MF utils/CMakeFiles/utils.dir/volcluster.cpp.o.d -o utils/CMakeFiles/utils.dir/volcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::GrowOne(std::vector, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2351:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2351 | for(int n=0; n < nbrs.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::Clusterize()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2371:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2371 | if(pointno >= this->voxlist.size()) break; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2379 | if(pointno >= this->voxlist.size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::ClusterSummarize(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2408:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2408 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::PrintClusterSum(FILE*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2456:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2456 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::WritePointSet(char*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2468:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2468 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::SortClusters(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2490:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2490 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::PruneClusters(double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2513:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2513 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::MaxClusterSize()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2546:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2546 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘std::vector SpatTempCluster::GetClusterSizes()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2556:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2556 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In function ‘CHT* CHTread(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1078:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1078 | fgets(tmpstr, 1000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1092:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1092 | fgets(tmpstr, 1000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1141:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1141 | fscanf(fp, "%lf ", &dummy); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1142:45: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1142 | for (v = 0; v < cht->n_sthr; v++) fscanf(fp, "%d ", &(cht->hits[i][v])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In function ‘CLUSTER_SIM_DATA* CSDread(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1320:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1320 | fscanf(fp, "%s", tag); | ~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1322:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1322 | fscanf(fp, "%s", csd->simtype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1324:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1324 | fscanf(fp, "%s", csd->anattype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1326:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1326 | fscanf(fp, "%s", csd->subject); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1327:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1327 | fscanf(fp, "%s", csd->hemi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1331:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1331 | fscanf(fp, "%lf", &(csd->thresh)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1333:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | fscanf(fp, "%lf", &(csd->threshsign)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1335:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1335 | fscanf(fp, "%ld", &(csd->seed)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1337:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1337 | fscanf(fp, "%s", csd->contrast); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1339:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1339 | fscanf(fp, "%lf", &csd->nullfwhm); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1341:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1341 | fscanf(fp, "%lf", &csd->varfwhm); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1343:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1343 | fscanf(fp, "%lf", &csd->searchspace); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1345:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1345 | fscanf(fp, "%d", &(nrepstmp)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1359:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1359 | fscanf(fp, "%d", &(csd->nreps)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1363:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1363 | fscanf(fp, "%d", &(csd->FixGroupSubjectArea)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1365:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1365 | fgets(tmpstr, 1000, fp); // not an interesting line, so get past it | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1370:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1370 | fscanf(fp, "%d", &(csd->nClusters[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1371:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1371 | fscanf(fp, "%lf", &(csd->MaxClusterSize[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -DNDEBUG -std=c++17 -w -fPIC -std=gnu89 -MD -MT packages/svm/CMakeFiles/svm.dir/svm-lib-c.cpp.o -MF packages/svm/CMakeFiles/svm.dir/svm-lib-c.cpp.o.d -o packages/svm/CMakeFiles/svm.dir/svm-lib-c.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm/svm-lib-c.cpp [423/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsDenoiseImageFs && xxd -i AntsDenoiseImageFs.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs/AntsDenoiseImageFs.help.xml.h [424/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs && xxd -i AntsN4BiasFieldCorrectionFs.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.help.xml.h [425/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFit.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFit.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFit.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecGlmFit.cxx [426/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert && xxd -i lta_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert/lta_convert.help.xml.h [427/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/io && xxd -i fs_temp_file.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io/fs_temp_file.help.xml.h [428/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_add_xform_to_header && xxd -i mri_add_xform_to_header.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header/mri_add_xform_to_header.help.xml.h [429/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/io && xxd -i fs_temp_dir.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io/fs_temp_dir.help.xml.h [430/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg && xxd -i mri_aparc2aseg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg/mri_aparc2aseg.help.xml.h [431/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg && xxd -i mri_surf2volseg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg/mri_surf2volseg.help.xml.h [432/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label && xxd -i mri_ca_label.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label/mri_ca_label.help.xml.h [433/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize && xxd -i mri_ca_normalize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize/mri_ca_normalize.help.xml.h [434/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_register && xxd -i mri_ca_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register/mri_ca_register.help.xml.h [435/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc && xxd -i mri_cc.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc/mri_cc.help.xml.h [436/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap && xxd -i mri_compute_seg_overlap.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap/mri_compute_seg_overlap.help.xml.h [437/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg && xxd -i mri_edit_wm_with_aseg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.help.xml.h [438/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert && xxd -i mri_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert/mri_convert.help.xml.h [439/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register && xxd -i mri_em_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register/mri_em_register.help.xml.h [440/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations && xxd -i mri_fuse_segmentations.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations/mri_fuse_segmentations.help.xml.h [441/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill && xxd -i mri_fill.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill/mri_fill.help.xml.h [442/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mask && xxd -i mri_mask.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask/mri_mask.help.xml.h [443/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gcut && xxd -i mri_gcut.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut/mri_gcut.help.xml.h [444/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc && xxd -i mri_pretess.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc/mri_pretess.help.xml.h [445/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc && xxd -i mris_extract_main_component.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc/mris_extract_main_component.help.xml.h [446/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize && xxd -i mri_normalize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize/mri_normalize.help.xml.h [447/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize && xxd -i mri_long_normalize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize/mri_long_normalize.help.xml.h [448/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_refine_seg && xxd -i mri_refine_seg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg/mri_refine_seg.help.xml.h [449/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_remove_neck && xxd -i mri_remove_neck.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck/mri_remove_neck.help.xml.h [450/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i mri_robust_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/mri_robust_register.help.xml.h [451/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i mri_robust_template.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/mri_robust_template.help.xml.h [452/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap && xxd -i mri_seg_overlap.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap/mri_seg_overlap.help.xml.h [453/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i lta_diff.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/lta_diff.help.xml.h [454/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segment && xxd -i mri_segment.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment/mri_segment.help.xml.h [455/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep && xxd -i mri_si_prep.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep/mri_si_prep.help.xml.h [456/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats && xxd -i mri_segstats.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats/mri_segstats.help.xml.h [457/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_tessellate && xxd -i mri_tessellate.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate/mri_tessellate.help.xml.h [458/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed && xxd -i mri_watershed.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed/mri_watershed.help.xml.h [459/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats && xxd -i mris_anatomical_stats.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats/mris_anatomical_stats.help.xml.h [460/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_label && xxd -i mris_ca_label.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label/mris_ca_label.help.xml.h [461/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_diff && xxd -i mris_annot_diff.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff/mris_annot_diff.help.xml.h [462/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc && xxd -i mris_calc.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc/mris_calc.help.xml.h [463/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_convert && xxd -i mris_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_convert/mris_convert.help.xml.h [464/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset && xxd -i mris_defects_pointset.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset/mris_defects_pointset.help.xml.h [465/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature && xxd -i mris_curvature.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature/mris_curvature.help.xml.h [466/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_euler_number && xxd -i mris_euler_number.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number/mris_euler_number.help.xml.h [467/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology && xxd -i mris_fix_topology.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology/mris_fix_topology.help.xml.h [468/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology && xxd -i mris_remove_intersection.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology/mris_remove_intersection.help.xml.h [469/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_inflate && xxd -i mris_inflate.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate/mris_inflate.help.xml.h [470/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_jacobian && xxd -i mris_jacobian.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian/mris_jacobian.help.xml.h [471/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mris_make_surfaces.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mris_make_surfaces.help.xml.h [472/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mris_place_surface.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mris_place_surface.help.xml.h [473/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mri_stopmask.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mri_stopmask.help.xml.h [474/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize && xxd -i mris_skeletonize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize/mris_skeletonize.help.xml.h [475/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register && xxd -i mris_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register/mris_register.help.xml.h [476/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere && xxd -i mris_sphere.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere/mris_sphere.help.xml.h [477/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth && xxd -i mris_smooth.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth/mris_smooth.help.xml.h [478/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask && xxd -i mris_volmask.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask/mris_volmask.help.xml.h [479/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_paint && xxd -i mrisp_paint.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint/mrisp_paint.help.xml.h [480/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd && xxd -i talairach_afd.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd/talairach_afd.help.xml.h [481/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cal_renormalize_gca && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cal_renormalize_gca && xxd -i mri_cal_renormalize_gca.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cal_renormalize_gca/mri_cal_renormalize_gca.help.xml.h [482/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_concatenate_gcam && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_gcam && xxd -i mri_concatenate_gcam.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_concatenate_gcam/mri_concatenate_gcam.help.xml.h [483/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ms_fitparms && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ms_fitparms && xxd -i mri_ms_fitparms.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ms_fitparms/mri_ms_fitparms.help.xml.h [484/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_rf_label && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_label && xxd -i mri_rf_label.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_rf_label/mri_rf_label.help.xml.h [485/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segcentroids && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segcentroids && xxd -i mri_segcentroids.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segcentroids/mri_segcentroids.help.xml.h [486/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_apply_reg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_apply_reg && xxd -i mris_apply_reg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_apply_reg/mris_apply_reg.help.xml.h [487/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_warp_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_warp_convert && xxd -i mri_warp_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_warp_convert/mri_warp_convert.help.xml.h [488/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_find_flat_regions && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions && xxd -i mris_find_flat_regions.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_find_flat_regions/mris_find_flat_regions.help.xml.h [489/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake && xxd -i mris_pmake.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake/mris_pmake.help.xml.h [490/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh && xxd -i mris_remesh.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh/mris_remesh.help.xml.h [491/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_reposition_surface && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface && xxd -i mris_reposition_surface.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_reposition_surface/mris_reposition_surface.help.xml.h [492/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_watershed && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_watershed && xxd -i mris_watershed.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_watershed/mris_watershed.help.xml.h [493/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_transform && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_transform && xxd -i mris_transform.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_transform/mris_transform.help.xml.h [494/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_write && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_write && xxd -i mrisp_write.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_write/mrisp_write.help.xml.h [495/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/svm -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -DNDEBUG -std=c++17 -w -fPIC -std=gnu89 -MD -MT packages/svm/CMakeFiles/svm.dir/svm-lib.cpp.o -MF packages/svm/CMakeFiles/svm.dir/svm-lib.cpp.o.d -o packages/svm/CMakeFiles/svm.dir/svm-lib.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm/svm-lib.cpp [496/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/svm -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -DNDEBUG -std=c++17 -w -fPIC -std=gnu89 -MD -MT packages/svm/CMakeFiles/svm.dir/svm-model.cpp.o -MF packages/svm/CMakeFiles/svm.dir/svm-model.cpp.o.d -o packages/svm/CMakeFiles/svm.dir/svm-model.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm/svm-model.cpp [497/1580] /usr/bin/g++ -DBUILD_MAIN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -MD -MT utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -MF utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o.d -o utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsPrintHelp.cpp [498/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/svm -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecGlmDesign.cxx [509/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -MF lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o.d -o lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [510/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -MF mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o.d -o mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [511/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -MF mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o.d -o mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:84:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [512/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -MF mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o.d -o mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [513/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -MF mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o.d -o mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [514/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -MF mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o.d -o mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:181: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:299:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [515/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -MF mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o.d -o mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_brainvol_stats/mri_brainvol_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_brainvol_stats/mri_brainvol_stats.cpp:10: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [516/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -MF mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o.d -o mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:225:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 225 | for (i = 0 ; i < NSTRUCTURES ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:591:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 591 | for (norm_samples = i = 0 ; i < NSTRUCTURES ; i++) | ^ [517/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -MF mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o.d -o mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_register/mri_ca_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_register/mri_ca_register.cpp:54: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [518/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -MF mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o.d -o mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 311 | for (i = 0 ; i < NLABELS ; i++) | ^ [519/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs -I/usr/include/ITK-5.4 -I/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign-field -fopenmp -MD -MT AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -MF AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o.d -o AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsDenoiseImageFs/AntsDenoiseImageFs.cpp [520/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -MF mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o.d -o mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘MRI* insert_wm_segmentation(MRI*, MRI*, int, int, GCA*, TRANSFORM*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:2170:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2170 | for (n = 0 ; n < NEDITABLE_LABELS ; n++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int preprocess(MRI*, MRI*, GCA*, TRANSFORM*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:2349:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2349 | for (i = 0 ; i < NEXPANDABLE_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int MRIinsertFromSeg(MRI*, MRI*, std::vector, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:5494:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5494 | for(int n=0; n < InsertFromSegIndices.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:5500:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5500 | for(int n=0; n < InsertFromSegIndices.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:276:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 276 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [521/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -MF mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o.d -o mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_overlap/mri_compute_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_overlap/mri_compute_overlap.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [522/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -MF mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o.d -o mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [523/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -MF mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o.d -o mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap/mri_compute_seg_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap/mri_compute_seg_overlap.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [524/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -MF mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o.d -o mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [525/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign -fopenmp -MD -MT mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -MF mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o.d -o mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_make_uchar.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_make_uchar.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics [526/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -MF mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o.d -o mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:235:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [527/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -MF mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o.d -o mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_deface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_deface.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [528/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -MF mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o.d -o mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:168:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [529/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign -fopenmp -MD -MT mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -MF mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o.d -o mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics [530/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -MF mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o.d -o mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:144: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:231:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [531/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -MF mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o.d -o mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:339:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 339 | for(int n=0; n < psno.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘std::vector ReadFrameList(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:788:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 788 | if(nread == -1) break; | ~~~~~~^~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘double GetPVal(double, std::vector, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:946:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 946 | for(int n=0; n < vallist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘std::vector > GetPStackNos(int, int, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1003:41: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1003 | while(ntries < nperm*2 && psno.size() < nperm){ | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1011:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1011 | for(int k=0; k < psno.size(); k++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:142:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 142 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In member function ‘int DualPerm::mergedirs(const char*, const char**, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1037:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1037 | fscanf(fp,"%lu\n",&seedlist[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:282:24: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 282 | sprintf(cdir,"%s/%s",glmdir,dpm->glm->Cname[0]); | ^ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:30: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:282:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 1001) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:287:22: warning: ‘/Xg.dat’ directive writing 7 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 287 | sprintf(fname,"%s/Xg.dat",glmdir); | ^~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:287:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 1007 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:289:22: warning: ‘/C.dat’ directive writing 6 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 289 | sprintf(fname,"%s/C.dat",glmdir); | ^~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:289:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 7 and 1006 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:291:22: warning: ‘/mask.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 291 | sprintf(fname,"%s/mask.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:291:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:294:22: warning: ‘/beta.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 294 | sprintf(fname,"%s/beta.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:294:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:296:22: warning: ‘/rvar.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 296 | sprintf(fname,"%s/rvar.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:296:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:298:22: warning: ‘/gamma.nii.gz’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 298 | sprintf(fname,"%s/gamma.nii.gz",cdir); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:298:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:302:22: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 302 | sprintf(fname,"%s/sig.nii.gz",cdir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:302:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [532/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/findtranslation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/findtranslation.cpp:76: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [533/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs -I/usr/include/ITK-5.4 -I/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign-field -fopenmp -MD -MT AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -MF AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o.d -o AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:74:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for(int n = 2; n < rescaleopts.size(); n++) rescaleids.push_back(atoi(rescaleopts[n].c_str())); | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:76:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 76 | for(int n = 0; n < rescaleids.size(); n++) printf("%d ",rescaleids[n]); | ~~^~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign-field’ may have been intended to silence earlier diagnostics [534/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -MF mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o.d -o mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [535/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -MF mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o.d -o mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation/mri_edit_segmentation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation/mri_edit_segmentation.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [536/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [537/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/mri_em_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/mri_em_register.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [538/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -MF mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o.d -o mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [539/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -MF mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o.d -o mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_largest_CC/mri_extract_largest_CC.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_largest_CC/mri_extract_largest_CC.cpp:40: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [540/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -MF mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o.d -o mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations/mri_fuse_segmentations.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations/mri_fuse_segmentations.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [541/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -MF mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o.d -o mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:220: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:348:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 348 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [542/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -MF mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o.d -o mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gcut/mri_gcut.cpp [543/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -MF mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o.d -o mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_info/mri_info.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_info/mri_info.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [544/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -MF mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o.d -o mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2vol/mri_label2vol.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2vol/mri_label2vol.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [545/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -MF mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o.d -o mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:2084:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2084 | for (i = 0 ; i < NLABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:2764:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2764 | for (i = 0 ; i < NLABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:3034:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3034 | for (i = 0 ; i < NLABELS ; i++) | ^ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [546/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -MF mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o.d -o mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp:58: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [547/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -MF mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o.d -o mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_log_likelihood/mri_log_likelihood.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_log_likelihood/mri_log_likelihood.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [548/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -MF mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o.d -o mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp: In function ‘int read_mat(int, char**, int, MATRIX*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:198:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 198 | fscanf(fin, "%s", subject_name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:199:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fscanf(fin, "%f", &ipr); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:200:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fscanf(fin, "%f", &st); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:201:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | fscanf(fin, "%f", &brightness); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:202:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | MATRIX_RELT(in_mat, 1, 2), MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:204:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 | MATRIX_RELT(in_mat, 2, 2), MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:206:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 206 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:208:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 208 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 4, 1), MATRIX_RELT(in_mat, 4, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 | MATRIX_RELT(in_mat, 4, 3), MATRIX_RELT(in_mat, 4, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:229:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), MATRIX_RELT(in_mat, 1, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 | MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:231:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), MATRIX_RELT(in_mat, 2, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:233:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fscanf(fin, "%f %f %f %f;", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:244:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 244 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), MATRIX_RELT(in_mat, 1, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 | MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:246:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), MATRIX_RELT(in_mat, 2, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 | MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:248:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 248 | fscanf(fin, "%f %f %f %f;", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:250:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 4, 1), MATRIX_RELT(in_mat, 4, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | MATRIX_RELT(in_mat, 4, 3), MATRIX_RELT(in_mat, 4, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [549/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -MF mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o.d -o mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mask/mri_mask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mask/mri_mask.cpp:44: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [550/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -MF mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o.d -o mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [551/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -MF mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o.d -o mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mris_extract_main_component.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mris_extract_main_component.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [552/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -MF mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o.d -o mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_mc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_mc.cpp:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [553/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -MF mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o.d -o mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_pretess.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_pretess.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [554/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -MF mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o.d -o mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_long_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_long_normalize.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [555/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -MF mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o.d -o mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp:743:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 743 | for (i = 0 ; i < NWM_LABELS ; i++) | ^ [556/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/glut -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -MF mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o.d -o mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_probedicom/mri_probedicom.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_probedicom/mri_probedicom.cpp:57: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [557/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -MF mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o.d -o mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_hypointensities/mri_relabel_hypointensities.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_hypointensities/mri_relabel_hypointensities.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [558/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -MF mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o.d -o mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp:88:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 88 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [559/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -MF mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o.d -o mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_remove_neck/mri_remove_neck.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_remove_neck/mri_remove_neck.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [560/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp: In member function ‘std::pair JointHisto::getMinMax()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp:110:44: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 110 | pair JointHisto::getMinMax() | ^ [561/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [562/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -MF mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o.d -o mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_refine_seg/mri_refine_seg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_refine_seg/mri_refine_seg.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [563/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp:34: /usr/include/ITK-5.4/vcl_iostream.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp:45: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [564/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp: In static member function ‘static std::pair CostFunctions::minmax(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:47:53: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 47 | std::pair CostFunctions::minmax(MRI *i) | ^ [565/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.h:34, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [566/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp: In static member function ‘static MRI* MyMRI::MRInorm255(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:45:61: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mm = CostFunctions::minmax(mri_src); | ^ [567/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [568/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_template.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.h:35, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_template.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [569/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [570/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [571/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [572/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp: In static member function ‘static std::pair CostFunctions::minmax(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:47:53: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 47 | std::pair CostFunctions::minmax(MRI *i) | ^ [573/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [574/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [575/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp: In static member function ‘static MRI* MyMRI::MRInorm255(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:45:61: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mm = CostFunctions::minmax(mri_src); | ^ [576/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp:30: /usr/include/ITK-5.4/vcl_iostream.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [577/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [578/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [579/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp: In static member function ‘static std::pair CostFunctions::minmax(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:47:53: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 47 | std::pair CostFunctions::minmax(MRI *i) | ^ [580/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.h:35, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RobustGaussian.h:48, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Regression.cpp:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Regression.h:124, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RobustGaussian.cpp: In instantiation of ‘static std::pair<_FIter, _FIter> RobustGaussian::medianI(T*, int) [with T = float]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp:2030:65: required from here 2030 | pair mm = RobustGaussian::medianI(dd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ 2031 | (int) set.size()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RobustGaussian.cpp:316:12: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 316 | pair RobustGaussian::medianI(T t[], int n) | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [581/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [582/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp: In static member function ‘static MRI* MyMRI::MRInorm255(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:45:61: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mm = CostFunctions::minmax(mri_src); | ^ [583/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_create_tests.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_create_tests.cpp:47: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [584/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [585/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp: In static member function ‘static std::pair CostFunctions::minmax(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:47:53: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 47 | std::pair CostFunctions::minmax(MRI *i) | ^ [586/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [587/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -MF mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o.d -o mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_gradient_info.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_gradient_info.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [588/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -MF mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o.d -o mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:72: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:128:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [589/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp: In static member function ‘static MRI* MyMRI::MRInorm255(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:45:61: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mm = CostFunctions::minmax(mri_src); | ^ [590/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -MF mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o.d -o mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segment/mri_segment.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segment/mri_segment.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [591/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [592/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -MF mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o.d -o mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp:165: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [593/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -MF mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o.d -o mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp:80:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [594/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -MF mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o.d -o mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:49: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp: In function ‘int LoadDavidsTable(char*, int**, double**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:388:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 388 | for (n=strlen(segname)-4;n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp: In function ‘MRI* MRIrescaleBySeg(MRI*, MRI*, std::vector, double, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:2669:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2669 | for(int k=0; k < segids.size(); k++) printf("%2d ",segids[k]); | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:2679:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2679 | for(int k=0; k < segids.size(); k++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:1589:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1589 | fscanf(fptmp,"%lf",&stiv); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [597/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -MF mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o.d -o mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:310: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:515:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 515 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [598/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -MF mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o.d -o mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [599/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -MF mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o.d -o mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_tessellate/mri_tessellate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_tessellate/mri_tessellate.cpp:82: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [600/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -MF mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o.d -o mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap/mri_seg_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap/mri_seg_overlap.cpp:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [601/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -MF mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o.d -o mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:190:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:1060:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1060 | fscanf(fp,"%lf",&fwhm); | ~~~~~~^~~~~~~~~~~~~~~~ [602/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -MF mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o.d -o mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [603/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -MF mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o.d -o mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:90:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [604/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -MF mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o.d -o mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2vol/mri_vol2vol.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2vol/mri_vol2vol.cpp:469: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [605/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -MF mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o.d -o mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [606/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -MF mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o.d -o mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [607/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -MF mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o.d -o mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [608/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -MF mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o.d -o mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [609/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -MF mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o.d -o mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_diff/mris_annot_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_diff/mris_annot_diff.cpp:4: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [610/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -MF mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o.d -o mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:24:9: warning: ‘_ISOC99_SOURCE’ redefined 24 | #define _ISOC99_SOURCE | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/15/aarch64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/15/aarch64-redhat-linux/bits/c++config.h:727, from /usr/include/c++/15/cstdint:40, from : /usr/include/features.h:216:10: note: this is the location of the previous definition 216 | # define _ISOC99_SOURCE 1 | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:45: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp: In function ‘short int CURV_copy(float*, float*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:1128:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1128 | for(i=0; in_points; n++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp: In function ‘e_FILEACCESS CURV_fileRead(char*, long unsigned int*, float**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:2006:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2006 | for(i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [612/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -MF mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o.d -o mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp: In function ‘int MRIScomputeNeighbors(MRI_SURFACE*, float)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:674:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 674 | for (n = 0 ; n < nbrs ; n++) | ~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:717:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | for (n = 0 ; n < nbrs ; n++) | ~~^~~~~~ [613/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -MF mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o.d -o mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcautils.hpp:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [614/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -MF mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o.d -o mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_divide_parcellation/mris_divide_parcellation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_divide_parcellation/mris_divide_parcellation.cpp:119: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [615/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/CMakeFiles/freeview_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/deps /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/bd907bd61e64f4fcee548229340633e0695a43222e31b7775681bd6c70b20ff7.d [616/1580] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/CMakeFiles/freeview_autogen.dir/AutoRcc_freeview_EWIEGA46WW_Info.json Release [617/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -MF mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o.d -o mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_euler_number/mris_euler_number.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_euler_number/mris_euler_number.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [618/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -MF mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o.d -o mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature_stats/mris_curvature_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature_stats/mris_curvature_stats.cpp:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [619/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -MF mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o.d -o mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset/mris_defects_pointset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset/mris_defects_pointset.cpp:7: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [620/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -MF mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o.d -o mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:92: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:383:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [621/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -MF mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o.d -o mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_fix_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_fix_topology.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [622/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -MF mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o.d -o mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_remove_intersection.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_remove_intersection.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [623/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -MF mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o.d -o mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_jacobian/mris_jacobian.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_jacobian/mris_jacobian.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [624/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -MF mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o.d -o mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_inflate/mris_inflate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_inflate/mris_inflate.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [625/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -MF mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o.d -o mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:140: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:214:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 214 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘label2annotationV2()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:30: warning: ‘%s’ directive writing between 1 and 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 966 | sprintf(report, "%s%s%d", report, (mapped_count) ? ", " : " ", labelmapped); | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:27: note: directive argument in the range [0, 2147483647] 966 | sprintf(report, "%s%s%d", report, (mapped_count) ? ", " : " ", labelmapped); | ^~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:128: In function ‘sprintf’, inlined from ‘label2annotationV2()’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 3 and 1036 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:30:34: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘report’ [-Wrestrict] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘label2annotationV2()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:957:12: note: destination object referenced by ‘restrict’-qualified argument 1 was declared here 957 | char report[1024] = {'\0'}; | ^~~~~~ [626/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -MF mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o.d -o mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:55, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [627/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -MF mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o.d -o mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:265:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 265 | for (sno = 0; sno < SURFACES ; sno++) | ^ [628/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:435:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [629/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -MF mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o.d -o mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp:68:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 68 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [630/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:86:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [631/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_refine_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_refine_surfaces.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [632/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_mef_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_mef_surfaces.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [633/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/mris_exvivo_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/mris_exvivo_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/mris_exvivo_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_exvivo_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_exvivo_surfaces.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [634/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -MF mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o.d -o mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:391:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 391 | for (sno = 0; sno < SURFACES ; sno++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:158:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [635/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -MF mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o.d -o mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth/mris_smooth.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth/mris_smooth.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [636/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:54: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTarget(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] > (1.0/pow(10,this->minPGrey)) && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:202:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 202 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > (1.0/pow(10,this->minPGrey)) && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:248:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 248 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:280:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 280 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:291:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:303:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 303 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTargetO(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:350:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 350 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:362:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 362 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] >1.0e-20 && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:461:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > 1e-15 && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:507:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 507 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:539:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 539 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:550:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 550 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:562:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 562 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘std::vector > MRIS_MultimodalRefinement::GetMeanAndVariance(MRIS*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:629:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 629 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 641 | for(int n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(int i = 0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::nmasknbrs(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int n=0; n < nbrlist.size(); n++) if(MRIgetVoxVal(m_mask,nbrlist[n],0,0,0)>0) nnbrs++; | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘void SurfSkeleton::get_termbranch()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:124:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::get_branches()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:138:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for(int n=0; n < terminals.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:156:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | for(int k=0; k < nbrlist.size(); k++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::erodeable(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:188:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int n = 0; n < nbrlist.size(); n++) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:193:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | if(n==nbrlist.size()-1 && m==0) last0=1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::write_pointset(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:275:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::write_label(char*, char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 299 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::skeletonize()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:355:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 355 | for(int eno=0; eno < edgelist.size(); eno++){ | ~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:393:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [638/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -MF mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o.d -o mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_sphere.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_sphere.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [639/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -MF mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o.d -o mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_remove_negative_vertices.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_project.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_remove_negative_vertices.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [640/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/face.cpp [641/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -MF mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o.d -o mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_surface_stats/mris_surface_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_surface_stats/mris_surface_stats.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [642/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/globals.cpp [643/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -MF mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o.d -o mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_thickness.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_thickness.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [644/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -MF mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o.d -o mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_gradient.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_gradient.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [645/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/loop.cpp [646/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.cpp:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:76:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/deque:69, from /usr/include/c++/15/queue:68, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:20: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [647/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/segment.cpp [648/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/patchdisk.cpp [649/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -MF mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o.d -o mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [650/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -MF mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o.d -o mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness_diff/mris_thickness_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness_diff/mris_thickness_diff.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [651/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/vertex.cpp [652/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:113: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:127: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTarget(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] > (1.0/pow(10,this->minPGrey)) && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:202:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 202 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > (1.0/pow(10,this->minPGrey)) && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:248:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 248 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:280:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 280 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:291:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:303:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 303 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTargetO(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:350:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 350 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:362:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 362 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] >1.0e-20 && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:461:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > 1e-15 && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:507:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 507 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:539:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 539 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:550:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 550 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:562:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 562 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘std::vector > MRIS_MultimodalRefinement::GetMeanAndVariance(MRIS*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:629:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 629 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 641 | for(int n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(int i = 0; i >, int, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:2101:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2101 | for(int n=0; n < crslist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:339:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [653/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topo_fixer.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topo_fixer.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [654/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:76:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:16: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [655/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [656/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [657/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [658/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:165:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 165 | for (i = 0; i < 4; i++) printf ("%10d", hdr.dime.dim[i + 1]); printf ("\n"); | ^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:165:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 165 | for (i = 0; i < 4; i++) printf ("%10d", hdr.dime.dim[i + 1]); printf ("\n"); | ^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:114:30: warning: ‘.hdr’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 114 | sprintf (imgfile, "%s.hdr", imgroot); | ^~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:114:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 260 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:182:30: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 182 | sprintf (imgfile, "%s.img", imgroot); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:182:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 260 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [659/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o.d -o 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [661/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [662/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -c 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:138:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 138 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:23: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:138:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:141:32: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 141 | sprintf (outfile, "%s%s.img", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:141:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:217:32: warning: ‘.hdr’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 217 | sprintf (outfile, "%s%s.hdr", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:217:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:225:34: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 225 | sprintf (outfile, "%s%s.img", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:225:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [664/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [665/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [666/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c: In function ‘Inithdr’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:83:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 244 [-Wstringop-truncation] 83 | strncpy (phdr->hist.exp_time, string + 11, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:84:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 235 [-Wstringop-truncation] 84 | strncpy (phdr->hist.generated, string + 20, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:92:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 255 [-Wstringop-truncation] 92 | strncpy (phdr->hist.originator, string, 9); | ^ [667/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [668/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [669/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:90:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:99:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 99 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:99:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [670/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [671/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [672/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:48: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [673/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [674/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -MF mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o.d -o mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_paint/mrisp_paint.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_paint/mrisp_paint.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [675/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [676/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:94:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 94 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:18: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:94:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:98:54: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 98 | if (!strlen (outroot)) sprintf (outroot, "%sz", imgroot); | ^ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:98:25: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 257 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [677/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [678/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [679/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:94:30: warning: ‘.4dfp.ifh’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 94 | sprintf (filespc, "%s.4dfp.ifh", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:94:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:112:30: warning: ‘.4dfp.hdr’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 112 | sprintf (filespc, "%s.4dfp.hdr", imgroot); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:112:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [680/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [681/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [682/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c: In function ‘Inithdr’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:83:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 244 [-Wstringop-truncation] 83 | strncpy (phdr->hist.exp_time, string + 11, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:84:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 235 [-Wstringop-truncation] 84 | strncpy (phdr->hist.generated, string + 20, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:92:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 255 [-Wstringop-truncation] 92 | strncpy (phdr->hist.originator, string, 9); | ^ [683/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -MF talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o.d -o talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘VECTOR* ReadMeanVect(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:383:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘MATRIX* ReadCovMat(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:437:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘double* LoadProbas(char*, int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:561:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 561 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:596:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 596 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ [684/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [685/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [686/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:148:64: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 148 | if (!strlen (outroot)) sprintf (outroot, "%s_%s", imgroot, trailer); | ^ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:23: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:148:26: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [687/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3dd.c [688/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [689/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [690/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [691/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_open_quiet’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:69:42: warning: ‘.conc’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 69 | sprintf (conc_block->lstfile, "%s.conc", conc_block->lstroot); | ^~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:19: In function ‘sprintf’, inlined from ‘conc_open_quiet’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:69:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_open’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:129:42: warning: ‘.conc’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 129 | sprintf (conc_block->lstfile, "%s.conc", conc_block->lstroot); | ^~~~~ In function ‘sprintf’, inlined from ‘conc_open’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:129:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_new’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:253:45: warning: ‘.conc’ directive writing 5 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 253 | sprintf (conc_block->outfile, "%s_%s.conc", conc_block->lstroot, trailer); | ^~~~~ In function ‘sprintf’, inlined from ‘conc_new’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:253:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 7 or more bytes (assuming 262) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [692/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [693/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [694/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [695/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [696/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/MRISOBBTree.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘void Cleanup(std::vector&, std::vector&)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:958:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 958 | for (int n = 0; n < surfDistVector.size(); n++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘void SaveSurfaceDistances(std::vector&, std::string, std::string)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:970:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 970 | for (int n = 0; n < surfDistVector.size(); n++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ [697/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [698/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [699/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:127:36: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 127 | sprintf (filespc, "%s.4dfp.img", imgroot[j]); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:22: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:127:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:144:44: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 144 | sprintf (filespc, "%s.4dfp.img", mskroot[j]); | ^~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:144:4: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:164:36: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 164 | sprintf (filespc, "%s.4dfp.img", imgroot[j]); | ^~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:164:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [700/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [701/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [702/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [703/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [704/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [705/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [706/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [707/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [708/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [709/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [710/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [711/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [712/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [713/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[0]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[1]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [714/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [715/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:48: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [716/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [717/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [718/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [719/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_GUI -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -MF tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o.d -o tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:108: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void make_backup(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:3958:11: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3958 | system(command); | ~~~~~~^~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void goto_point(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4040:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4040 | fscanf(fp,"%f %f %f",&xpt,&ypt,&zpt); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_images(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4455:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4455 | fscanf(fptr,"%*s %d",&imnr0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4456:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4456 | fscanf(fptr,"%*s %d",&imnr1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4457:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4457 | fscanf(fptr,"%*s %d",&ptype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4458:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4458 | fscanf(fptr,"%*s %d",&xnum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4459:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4459 | fscanf(fptr,"%*s %d",&ynum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4460:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4460 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4461:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4461 | fscanf(fptr,"%*s %f",&ps); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4462:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4462 | fscanf(fptr,"%*s %f",&st); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4463:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4463 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4464:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4464 | fscanf(fptr,"%*s %f",&xx0); /* strtx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4465:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4465 | fscanf(fptr,"%*s %f",&xx1); /* endx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4466:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4466 | fscanf(fptr,"%*s %f",&yy0); /* strty */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4467:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4467 | fscanf(fptr,"%*s %f",&yy1); /* endy */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4468:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4468 | fscanf(fptr,"%*s %f",&zz0); /* strtz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4469:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4469 | fscanf(fptr,"%*s %f",&zz1); /* endz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4512:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4512 | fread(buf,sizeof(char),bufsize,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_second_images(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4553:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4553 | fscanf(fptr,"%*s %d",&imnr0_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4554:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4554 | fscanf(fptr,"%*s %d",&imnr1_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4555:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4555 | fscanf(fptr,"%*s %d",&ptype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4556:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4556 | fscanf(fptr,"%*s %d",&xnum_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4557:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4557 | fscanf(fptr,"%*s %d",&ynum_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4558:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4558 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4559:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4559 | fscanf(fptr,"%*s %lf",&ps_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4560:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4560 | fscanf(fptr,"%*s %lf",&st_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4561:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4561 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4562:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4562 | fscanf(fptr,"%*s %f",&xx0_2); /* strtx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4563:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4563 | fscanf(fptr,"%*s %f",&xx1_2); /* endx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4564:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4564 | fscanf(fptr,"%*s %f",&yy0_2); /* strty */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4565:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4565 | fscanf(fptr,"%*s %f",&yy1_2); /* endy */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4566:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4566 | fscanf(fptr,"%*s %f",&zz0_2); /* strtz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4567:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4567 | fscanf(fptr,"%*s %f",&zz1_2); /* endz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4612:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4612 | fread(buf_2,sizeof(float),bufsize_2,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_float_images(float***, char*, int, int, int, int, short int**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4780:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4780 | fread(*buf,sizeof(char),HEADERSIZE,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4805:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4805 | fread(*buf,sizeof(short),bufsize,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘MATRIX* Load4x4(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:5346:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5346 | fgets(s,1000,fp); | ~~~~~^~~~~~~~~~~ [720/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [721/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [722/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [723/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [724/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [725/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [726/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 124 | jndex=3 | ^~~~~ [727/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [728/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c:112:51: warning: variable ‘vdim’ set but not used [-Wunused-but-set-variable] 112 | int xdim, ydim, zdim, vdim, idim, isbig, isbigm, orientm; | ^~~~ [729/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [730/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [731/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [732/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [733/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[0]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[1]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [734/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f.o [735/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:25:38: 25 | real*4 flips(3,3)/-1.,+1.,-1., ! transverse | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:26:38: 26 | & -1.,+1.,+1., ! coronal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:27:38: 27 | & +1.,+1.,+1./ ! sagittal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:29:16: 29 | k=iori-1 ! ifh.orientation | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:53:132: 53 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:55:132: 55 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:44:21: 44 | character*256 rcsid/'$Id: ft4imgo.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [736/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:10: 3 | a=x'7fffffff' | 1 Warning: Hexadecimal constant at (1) uses nonstandard X instead of Z /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:8: 3 | a=x'7fffffff' | 1 Warning: BOZ literal constant at (1) is neither a DATA statement value nor an actual argument of INT/REAL/DBLE/CMPLX intrinsic subprogram [737/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [738/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [739/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:28:132: 28 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:30:132: 30 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:68:132: 68 | 1 ldefined=ldefined.and.ix(k).gt.0.and.ix(k).le.mx(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:19:21: 19 | character*256 rcsid/'$Id: ft4imgn.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [740/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:18:27: 18 | integer*4 imgdim(3) ! assumed positive | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:19:27: 19 | real*4 voxdim(3) ! assumed positive | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:26:47: 26 | 1 centere(k)=voxdim(k)*float(imgdim(k)/2) ! as in cross_realign3d_4dfp | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:26:132: 26 | 1 centere(k)=voxdim(k)*float(imgdim(k)/2) ! as in cross_realign3d_4dfp | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:28:38: 28 | call img2vrt(voxdim,centere,e) ! as in cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:29:38: 29 | call vrt2img(voxdim,centere,f) ! as in cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:30:39: 30 | call img2vrt(mmppixo,centero,o) ! as in t4imgs_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:31:39: 31 | call vrt2img(mmppixt,centert,t) ! as in t4imgs_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:33:36: 33 | call matmul(t4atl,o,temp1,4) ! target (atlas) FORTRAN index to virtual | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:34:36: 34 | call matmul(t,temp1,temp2,4) ! to source FORTRAN index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:35:38: 35 | call matmul(f2c,temp2,temp1,4) ! to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:36:36: 36 | call matmul(e,temp1,temp2,4) ! to virtual | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:37:40: 37 | call matmul(t4mat,temp2,temp1,4) ! frame align as computed by cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:38:33: 38 | call matmul(f,temp1,t4,4) ! to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:43:22: 43 | real*4 t4(4,4) ! target FORTRAN index to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:44:34: 44 | real*4 imgt(nxt,nyt,nzt,4) ! source image and spline coefficients | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:45:32: 45 | real*4 imgo(nxo,nyo,nzo) ! target | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:55:132: 55 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:57:132: 57 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:48:17: 48 | logical*4 ldebug/.false./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] [741/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/compute_vox2vox.c [742/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [743/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [744/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [745/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [746/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [747/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 124 | jndex=3 | ^~~~~ [748/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [749/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [750/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [751/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [752/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [753/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [754/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [755/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [756/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:10: 3 | a=x'7fffffff' | 1 Warning: Hexadecimal constant at (1) uses nonstandard X instead of Z /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:8: 3 | a=x'7fffffff' | 1 Warning: BOZ literal constant at (1) is neither a DATA statement value nor an actual argument of INT/REAL/DBLE/CMPLX intrinsic subprogram [757/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[0]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[1]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [758/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [759/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:25:38: 25 | real*4 flips(3,3)/-1.,+1.,-1., ! transverse | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:26:38: 26 | & -1.,+1.,+1., ! coronal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:27:38: 27 | & +1.,+1.,+1./ ! sagittal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:29:16: 29 | k=iori-1 ! ifh.orientation | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:53:132: 53 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:55:132: 55 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:44:21: 44 | character*256 rcsid/'$Id: ft4imgo.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [760/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [761/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [762/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [763/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:64:23: 64 | real*4 d(-nx/2:nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:65:45: 65 | real*4 g(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:66:45: 66 | real*4 h(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:70:12: 70 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:71:12: 71 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:72:12: 72 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:74:132: 74 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:75:132: 75 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:76:132: 76 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:83:22: 83 | do 3 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:84:132: 84 | do 3 iy=-ny/2,ny/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:85:132: 85 | do 3 ix=-nx/2,nx/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:89:132: 89 | 3 call splint3dvl(f,nx,ny,nz,d2xf,d2yf,d2zf,x,y,z,g(ix,iy,iz),h(ix,iy,iz)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:91:22: 91 | do 4 ix=-nx/2,nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:92:132: 92 | 4 d(ix)=float(ix0)+del*float(ix) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:95:23: 95 | do 51 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:99:20: 99 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:100:86: 100 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(g(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:105:23: 105 | do 61 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:109:20: 109 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:110:86: 110 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(h(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:125:45: 125 | real*4 g(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:126:23: 126 | real*4 d(-nx/2:nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:130:12: 130 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:131:12: 131 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:132:12: 132 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:134:132: 134 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:135:132: 135 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:136:132: 136 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:143:22: 143 | do 3 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:144:132: 144 | do 3 iy=-ny/2,ny/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:145:132: 145 | do 3 ix=-nx/2,nx/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:150:132: 150 | 3 g(ix,iy,iz)=v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:152:22: 152 | do 4 ix=-nx/2,nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:153:132: 153 | 4 d(ix)=float(ix0)+del*float(ix) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:156:23: 156 | do 51 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:160:20: 160 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:161:86: 161 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(g(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:210:132: 210 | do 21 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 21 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:254:132: 254 | do 31 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 31 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:301:132: 301 | do 31 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 31 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:351:132: 351 | 1 a(iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:355:132: 355 | 2 a(iz+nz*(iz+1))=1./6. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:359:132: 359 | do 11 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 11 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:446:12: 446 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:447:12: 447 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:448:12: 448 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:450:132: 450 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:451:132: 451 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:452:132: 452 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:487:132: 487 | 11 write (*,"()") | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:504:12: 504 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:505:12: 505 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:506:12: 506 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:508:132: 508 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:509:132: 509 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:510:132: 510 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:534:132: 534 | 11 write (*,"(10f10.4)")x,v,grad,(grad(i)-test(i),i=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1) [764/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:481:14: warning: comparison of constant ‘0’ with boolean expression is always true [-Wbool-compare] 481 | return t >= 0 ? t : -t; | ~~^~~~ [774/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/fiducials_correction_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/MainWindow.cpp.o -MF dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/MainWindow.cpp.o.d -o dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/MainWindow.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp: In member function ‘void MainWindow::SetupScriptPath()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp:89:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 89 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qdir.h:11, from /usr/include/qt6/QtCore/qtemporarydir.h:9, from /usr/include/qt6/QtCore/QTemporaryDir:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp:4: /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ [809/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction 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-Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/mocs_compilation.cpp.o -MF dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/mocs_compilation.cpp.o.d -o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/mocs_compilation.cpp [810/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogWelcome.cpp.o -MF dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogWelcome.cpp.o.d -o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogWelcome.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction/DialogWelcome.cpp [811/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o -MF dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o.d -o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp In file included from /usr/include/qt6/QtCore/qglobal.h:60, from /usr/include/qt6/QtGui/qtguiglobal.h:7, from /usr/include/qt6/QtWidgets/qtwidgetsglobal.h:8, from /usr/include/qt6/QtWidgets/qwidget.h:8, from /usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:481:14: warning: comparison of constant ‘0’ with boolean expression is always true [-Wbool-compare] 481 | return t >= 0 ? t : -t; | ~~^~~~ [812/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp In file included from /usr/include/qt6/QtCore/qglobal.h:60, from /usr/include/qt6/QtGui/qtguiglobal.h:7, from /usr/include/qt6/QtWidgets/qtwidgetsglobal.h:8, from /usr/include/qt6/QtWidgets/qwidget.h:8, from /usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:481:14: warning: comparison of constant ‘0’ with boolean expression is 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/MainWindow.cpp.o -MF dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/MainWindow.cpp.o.d -o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/MainWindow.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp: In member function ‘void MainWindow::SetupScriptPath()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp:324:14: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 324 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qfileinfo.h:9, from /usr/include/qt6/QtCore/QFileInfoList:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp:1: /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp:352:14: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 352 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp: In member function ‘void MainWindow::OnProcessFinished()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp:653:14: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 653 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ [834/1580] /usr/bin/g++ 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-Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/FSSurface.cpp.o -MF freeview/CMakeFiles/freeview.dir/FSSurface.cpp.o.d -o freeview/CMakeFiles/freeview.dir/FSSurface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp: In member function ‘FSSurface::FindPath(int*, int, int*, int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2063:26: warning: writing 1 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/usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/LayerMRI.cpp.o -MF freeview/CMakeFiles/freeview.dir/LayerMRI.cpp.o.d -o freeview/CMakeFiles/freeview.dir/LayerMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp: In member function ‘bool LayerMRI::LoadSurfaceRegions(const QString&)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp:3381:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3381 | fscanf( fp, "VOLUME_PATH %s\nVOLUME_THRESHOLD %f %f\nSURFACE_REGIONS %d", ch, &dTh_low, &dTh_high, &nNum ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp: In member function ‘bool LayerMRI::Load3DRegions(const QString&)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp:4619:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4619 | fscanf( fp, "VOLUME_PATH %s\nVOLUME_THRESHOLD %f %f\nNUM_OF_REGIONS %d", ch, &dTh_low, &dTh_high, &nNum ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [892/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/LUTDataHolder.cpp.o -MF freeview/CMakeFiles/freeview.dir/LUTDataHolder.cpp.o.d -o freeview/CMakeFiles/freeview.dir/LUTDataHolder.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp: In constructor ‘LUTDataHolder::LUTDataHolder()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp:60:17: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 60 | file_in.open(QIODevice::ReadOnly | QIODevice::Text); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qfileinfo.h:9, from /usr/include/qt6/QtCore/QFileInfo:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp:22: /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp:66:18: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 66 | file_out.open(QIODevice::WriteOnly | QIODevice::Text); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [893/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview 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-grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/SurfaceRegion.cpp.o -MF freeview/CMakeFiles/freeview.dir/SurfaceRegion.cpp.o.d -o freeview/CMakeFiles/freeview.dir/SurfaceRegion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp: In static member function ‘static bool SurfaceRegion::WriteHeader(FILE*, LayerMRI*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:301:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 301 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerVolumeBase.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:42: /usr/include/qt6/QtCore/qfile.h:293:32: note: declared here 293 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp: In member function ‘bool SurfaceRegion::WriteBody(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:349:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 349 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:293:32: note: declared here 293 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp: In member function ‘bool SurfaceRegion::Load(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:379:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 379 | fscanf( fp, "%d\nPOINTS %d", &nGroup, &nPts ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:383:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | fscanf( fp, "%d", &nPts ); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:398:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fscanf( fp, "%f %f %f", &x, &y, &z ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:417:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( fp, "%d %d %d %d", &nIds, nInts, nInts+1, nInts+2 ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [917/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/ThreadBuildContour.cpp.o -MF freeview/CMakeFiles/freeview.dir/ThreadBuildContour.cpp.o.d -o freeview/CMakeFiles/freeview.dir/ThreadBuildContour.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/ThreadBuildContour.cpp [918/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/TermWidget.cpp.o -MF freeview/CMakeFiles/freeview.dir/TermWidget.cpp.o.d -o freeview/CMakeFiles/freeview.dir/TermWidget.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/TermWidget.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/TermWidget.cpp: In member function ‘void TermWidget::OnStdinActivated()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/TermWidget.cpp:203:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(sbuf, sizeof(sbuf), stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [919/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/UIUpdateHelper.cpp.o -MF freeview/CMakeFiles/freeview.dir/UIUpdateHelper.cpp.o.d -o freeview/CMakeFiles/freeview.dir/UIUpdateHelper.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/UIUpdateHelper.cpp [920/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB 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~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/WindowQuickReference.cpp:17: /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [943/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp: In constructor ‘LayerODF::LayerODF(LayerMRI*, QObject*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp:43:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 43 | file.open(QIODevice::ReadOnly); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerVolumeBase.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.h:4, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp:1: /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp:52:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 52 | file.open(QIODevice::ReadOnly); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1003/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/FlowLayout.cpp.o -MF freeview/CMakeFiles/freeview.dir/FlowLayout.cpp.o.d -o freeview/CMakeFiles/freeview.dir/FlowLayout.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FlowLayout.cpp [1004/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/MainWindow.cpp.o -MF freeview/CMakeFiles/freeview.dir/MainWindow.cpp.o.d -o freeview/CMakeFiles/freeview.dir/MainWindow.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp: In member function ‘void MainWindow::OnGoToPoint()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp:8154:14: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 8154 | file.open(QIODevice::ReadOnly | QIODevice::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qdir.h:11, from /usr/include/qt6/QtCore/QtCore:91, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp:18: /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp: In static member function ‘static void MainWindow::WriteLog(const QString&, const QString&, bool)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp:9861:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 9861 | file.open(bOverwrite?QFile::WriteOnly:QFile::Append); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:291:32: note: declared here 291 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1005/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/PanelODF.cpp.o -MF freeview/CMakeFiles/freeview.dir/PanelODF.cpp.o.d -o freeview/CMakeFiles/freeview.dir/PanelODF.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/PanelODF.cpp [1006/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/Region3D.cpp.o -MF freeview/CMakeFiles/freeview.dir/Region3D.cpp.o.d -o freeview/CMakeFiles/freeview.dir/Region3D.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp: In static member function ‘static bool Region3D::WriteHeader(FILE*, LayerMRI*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:173:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 173 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerVolumeBase.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:16: /usr/include/qt6/QtCore/qfile.h:293:32: note: declared here 293 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp: In member function ‘bool Region3D::WriteBody(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:192:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 192 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:293:32: note: declared here 293 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp: In member function ‘bool Region3D::Load(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:213:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 213 | fscanf( fp, "POINTS %d", &nPts ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:217:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fscanf( fp, "%f %f %f", &x, &y, &z ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1010/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/DialogLabelStatsInRange.cpp.o -MF freeview/CMakeFiles/freeview.dir/DialogLabelStatsInRange.cpp.o.d -o freeview/CMakeFiles/freeview.dir/DialogLabelStatsInRange.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/DialogLabelStatsInRange.cpp [1022/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o -MF hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o.d -o hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 137 | for (sno = 0; sno < SURFACES ; sno++) { | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp:247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 247 | for (sno = 0; sno < SURFACES ; sno++) { | ^ [1023/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o -MF hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o.d -o hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_surfaces/hiam_make_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_make_surfaces/hiam_make_surfaces.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1024/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o -MF hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o.d -o hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp: In function ‘int mrisRegister(MRI_SURFACE*, MRI_SP*, INTEGRATION_PARMS*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp:504:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 504 | for (sno = 0 ; sno < SURFACES ; sno++) { | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp:558:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 558 | for (i = 0 ; i < NSIGMAS ; i++) /* for each spatial scale (blurring) */ | ^ [1025/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o -MF histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o.d -o histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/histo_register_block/histo_register_block.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/histo_register_block/histo_register_block.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1026/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -I/usr/include/eigen3 -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/ToolWindowLesionPopup.cpp.o -MF freeview/CMakeFiles/freeview.dir/ToolWindowLesionPopup.cpp.o.d -o freeview/CMakeFiles/freeview.dir/ToolWindowLesionPopup.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/ToolWindowLesionPopup.cpp [1027/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o -MF histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o.d -o histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/histo_synthesize/histo_synthesize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/histo_synthesize/histo_synthesize.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1028/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o -MF mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o.d -o mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_apply_bias.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_apply_bias.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1029/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o -MF label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o.d -o label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/label2patch/label2patch.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/label2patch/label2patch.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1030/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o -MF label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o.d -o label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/label2flat/label2flat.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/label2flat/label2flat.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1031/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o -MF mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o.d -o mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mkxsubjreg/mkxsubjreg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mkxsubjreg/mkxsubjreg.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1032/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o -MF mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o.d -o mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_tissue_parms/mri_ca_tissue_parms.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_tissue_parms/mri_ca_tissue_parms.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1033/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o -MF mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o.d -o mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_average/mri_average.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_average/mri_average.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1034/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o -MF mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o.d -o mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_compute_bias.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_compute_bias.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1035/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o -MF mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o.d -o mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compile_edits/mri_compile_edits.cpp [1036/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cal_renormalize_gca -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o -MF mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o.d -o mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cal_renormalize_gca/mri_cal_renormalize_gca.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cal_renormalize_gca/mri_cal_renormalize_gca.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1037/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o -MF mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o.d -o mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cnr/mri_cnr.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cnr/mri_cnr.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1038/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o -MF mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o.d -o mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_change_map/mri_compute_change_map.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_change_map/mri_compute_change_map.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1039/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o -MF mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o.d -o mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp:40: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp: In function ‘int replaceLabels(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp:1474:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1474 | for (i = 0 ; i < sizeof(output_labels)/sizeof(output_labels[0]) ; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp:143:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 143 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1040/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp:95:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1041/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_intensities.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_intensities.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1042/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_layer_fractions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_layer_fractions.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1043/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o -MF mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o.d -o mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_copy_values/mri_copy_values.cpp [1044/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mris_compute_layer_intensities.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mris_compute_layer_intensities.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1045/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o -MF mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o.d -o mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ctab_fix/mri_ctab_fix.cpp [1046/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_concatenate_gcam -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o -MF mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o.d -o mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_gcam/mri_concatenate_gcam.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_gcam/mri_concatenate_gcam.cpp:11: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1047/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o -MF mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o.d -o mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cor2label/mri_cor2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cor2label/mri_cor2label.cpp:104: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1048/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o -MF mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o.d -o mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/utils.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/macros.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/proto.h:99, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/const.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp:13: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [1049/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o -MF mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o.d -o mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_evaluate_morph/mri_evaluate_morph.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_evaluate_morph/mri_evaluate_morph.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1050/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o -MF mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o.d -o mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract/mri_extract.cpp [1051/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o -MF mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o.d -o mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp:44: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp:51: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp:37: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [1052/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o -MF mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o.d -o mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dist_surf_label/mri_dist_surf_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dist_surf_label/mri_dist_surf_label.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1053/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o -MF mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o.d -o mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:40: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:26: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:318:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 318 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp: In function ‘double compute_global_dct_optimum(DCT*, MRI*, MRI*, VOXEL_LIST*, VOXEL_LIST*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:1026:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1026 | for (i = 0 ; i < NSCALES ; i++) | ^ [1054/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o -MF mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o.d -o mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/utils.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/macros.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp:24: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [1055/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o -MF mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o.d -o mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fslmat_to_lta/mri_fslmat_to_lta.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fslmat_to_lta/mri_fslmat_to_lta.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fslmat_to_lta/mri_fslmat_to_lta.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1056/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o -MF mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o.d -o mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_fcd_features/mri_extract_fcd_features.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_fcd_features/mri_extract_fcd_features.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1057/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o -MF mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o.d -o mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_label/mri_extract_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_label/mri_extract_label.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1058/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o -MF mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o.d -o mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp:131:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1059/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o -MF mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o.d -o mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp:57: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp:128:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1060/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o -MF mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o.d -o mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_intensity_images/mri_fuse_intensity_images.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_intensity_images/mri_fuse_intensity_images.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1061/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o -MF mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o.d -o mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp:146:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1062/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o -MF mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o.d -o mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gca_ambiguous/mri_gca_ambiguous.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gca_ambiguous/mri_gca_ambiguous.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1063/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o -MF mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o.d -o mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_head/mri_head.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_head/mri_head.cpp: In function ‘void dummy_read()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_head/mri_head.cpp:167:10: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | freopen("/dev/null", "w", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [1064/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o -MF mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o.d -o mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp:56:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp:13: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1065/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o -MF mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o.d -o mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:63: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:174:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | for(int n=0; n < yflist.size(); n++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:502:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 502 | for(int cno=0; cno < csizelist.size(); cno++){ | ~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:141:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:307:22: warning: ‘/gamma.nii.gz’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 307 | sprintf(fname,"%s/gamma.nii.gz",condir); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:48: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:307:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:321:22: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 321 | sprintf(fname,"%s/sig.nii.gz",condir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:321:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:341:22: warning: ‘/ocn.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 341 | sprintf(fname,"%s/ocn.nii.gz",condir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:341:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:343:22: warning: ‘/ctab.ocn’ directive writing 9 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 343 | sprintf(fname,"%s/ctab.ocn",condir); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:343:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 10 and 1009 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:345:22: warning: ‘/clusters.dat’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 345 | sprintf(fname,"%s/clusters.dat",condir); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:345:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:347:22: warning: ‘/clusters.json’ directive writing 14 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 347 | sprintf(fname,"%s/clusters.json",condir); | ^~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:347:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 1014 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:350:22: warning: ‘/max.cluster.dat’ directive writing 16 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 350 | sprintf(fname,"%s/max.cluster.dat",condir); | ^~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:350:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 17 and 1016 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:490:24: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 490 | sprintf(fname,"%s/sig.nii.gz",condir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:490:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:498:24: warning: ‘/cluster.pval.dat’ directive writing 17 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 498 | sprintf(fname,"%s/cluster.pval.dat",condir); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:498:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 18 and 1017 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:518:24: warning: ‘/ocn.thresh.nii.gz’ directive writing 18 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 518 | sprintf(fname,"%s/ocn.thresh.nii.gz",condir); | ^~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:518:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 19 and 1018 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:520:24: warning: ‘/cluster.pval.min.dat’ directive writing 21 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 520 | sprintf(fname,"%s/cluster.pval.min.dat",condir); | ^~~~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:520:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 22 and 1021 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:524:24: warning: ‘/clusters.perm.dat’ directive writing 18 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 524 | sprintf(fname,"%s/clusters.perm.dat",condir); | ^~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:524:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 19 and 1018 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:527:24: warning: ‘/clusters.perm.json’ directive writing 19 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 527 | sprintf(fname,"%s/clusters.perm.json",condir); | ^~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:527:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 1019 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [1066/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o -MF mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o.d -o mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp:131:21: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fscanf(fp,"%s",in_fname); | ~~~~~~^~~~~~~~~~~~~~~~~~ [1067/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o -MF mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o.d -o mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp:89:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 89 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1068/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o -MF mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o.d -o mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:60: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:209:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1069/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o -MF mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o.d -o mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:530: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:800:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 800 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:3011:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3011 | fscanf(fp,"%d",&mriglm->ffxdof); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:3133:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3133 | fscanf(fptmp,"%lf",&MRTM2_k2p); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ [1070/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o -MF mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o.d -o mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:45: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 229 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:238:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 238 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:595:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 595 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:601:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 601 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) { | ^ [1071/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o -MF mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o.d -o mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:40: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:364:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 364 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:470:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 470 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:477:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 477 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) | ^ [1072/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o -MF mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o.d -o mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_compute_distances.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_compute_distances.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1073/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o -MF mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o.d -o mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:45: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:245:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 245 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:249:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 249 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) { | ^ [1074/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o -MF mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o.d -o mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/timer.h:4, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/romp_support.h:47, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp:26: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [1075/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o -MF mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o.d -o mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [1076/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o -MF mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o.d -o mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_histo_eq/mri_histo_eq.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_histo_eq/mri_histo_eq.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1077/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o -MF mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o.d -o mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_joint_density/mri_joint_density.cpp [1078/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o -MF mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o.d -o mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_jacobian/mri_jacobian.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_jacobian/mri_jacobian.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1079/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o -MF mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o.d -o mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label_histo/mri_label_histo.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label_histo/mri_label_histo.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1080/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o -MF mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o.d -o mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_map_cpdat/mri_map_cpdat.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_map_cpdat/mri_map_cpdat.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1081/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o -MF mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o.d -o mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label_vals/mri_label_vals.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label_vals/mri_label_vals.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1082/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o -MF mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o.d -o mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label_volume/mri_label_volume.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label_volume/mri_label_volume.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1083/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o -MF mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o.d -o mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp:155:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fscanf(fp, "nsubjects=%d", &nsubjects) ; | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1084/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o -MF mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o.d -o mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mark_temporal_lobe/mri_mark_temporal_lobe.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mark_temporal_lobe/mri_mark_temporal_lobe.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1085/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o -MF mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o.d -o mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_modify.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_modify.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_modify.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1086/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o -MF mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o.d -o mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_copy_params.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_copy_params.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1087/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o -MF mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o.d -o mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:83: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:180:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1088/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o -MF mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o.d -o mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:99:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 99 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1089/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o -MF mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o.d -o mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mi/mri_mi.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mi/mri_mi.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1090/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o -MF mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o.d -o mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_nlfilter/mri_nlfilter.cpp [1091/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o -MF mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o.d -o mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_morphology/mri_morphology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_morphology/mri_morphology.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1092/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o -MF mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o.d -o mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_parse_sdcmdir/mri_parse_sdcmdir.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_parse_sdcmdir/mri_parse_sdcmdir.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_parse_sdcmdir/mri_parse_sdcmdir.cpp:107:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 107 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1093/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o -MF mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o.d -o mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_polv/mri_polv.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_polv/mri_polv.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1094/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o -MF mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o.d -o mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_otl/list_otl_labels.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_otl/list_otl_labels.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1095/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o -MF mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o.d -o mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_paint/mri_paint.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_paint/mri_paint.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1096/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o -MF mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o.d -o mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_reduce/mri_reduce.cpp [1097/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o -MF mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o.d -o mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp: In function ‘int guess_file_type(char*, int*, int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp:407:13: warning: ignoring return value of ‘ssize_t getline(char**, size_t*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | getline (&line, &size, fp); | ~~~~~~~~^~~~~~~~~~~~~~~~~~ [1098/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ms_fitparms -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o -MF mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o.d -o mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ms_fitparms/mri_ms_fitparms.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ms_fitparms/mri_ms_fitparms.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1099/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o -MF mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o.d -o mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_probe_ima/mri_probe_ima.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_probe_ima/mri_probe_ima.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1100/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_rf_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o -MF mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o.d -o mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp: In function ‘int postprocess_segmentation_with_aseg(MRI*, MRI*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp:867:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 867 | for (l = 0 ; l < NCLOSE_LABELS ; l++) | ^ [1101/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o -MF mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o.d -o mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ribbon/mri_ribbon.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ribbon/mri_ribbon.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1102/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o -MF mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o.d -o mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp: In function ‘int replaceLabels(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp:809:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 809 | for (i = 0 ; i < sizeof(output_labels)/sizeof(output_labels[0]) ; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp: In function ‘RANDOM_FOREST* train_rforest(MRI* (*)[20], MRI* (*)[20], TRANSFORM* (*)[20], int, GCA*, RFA_PARMS*, float, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp:1585:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1585 | write(fd, line, (strlen(line))*sizeof(char)) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1103/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o -MF mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o.d -o mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp: In function ‘int replaceLabels(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:908:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 908 | for (i = 0 ; i < sizeof(output_labels)/sizeof(output_labels[0]) ; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp: In function ‘RANDOM_FOREST* train_rforest_with_wmsa_nbrs(MRI**, MRI**, TRANSFORM**, int, GCA*, RFA_PARMS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:1859:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1859 | write(fd, line, (strlen(line))*sizeof(char)) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp: In function ‘RANDOM_FOREST* train_rforest(MRI**, MRI**, TRANSFORM**, int, GCA*, RFA_PARMS*, float, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:1646:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1646 | write(fd, line, (strlen(line))*sizeof(char)) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1104/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o -MF mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o.d -o mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rigid_register/mri_rigid_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_rigid_register/mri_rigid_register.cpp:83: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1105/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o -MF mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o.d -o mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp: In function ‘int fix_genesis(char*, char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:121:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 121 | if (fread(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:155:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 155 | if (fwrite(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp: In function ‘int fix_siemens(char*, char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 190 | if (fread(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:252:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 252 | if (fwrite(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ [1106/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o -MF mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o.d -o mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp:179:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 179 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1107/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o -MF mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o.d -o mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seghead/mri_seghead.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seghead/mri_seghead.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1108/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segcentroids -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o -MF mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o.d -o mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segcentroids/mri_segcentroids.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segcentroids/mri_segcentroids.cpp:10: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1109/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o -MF mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o.d -o mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_threshold/mri_threshold.cpp [1110/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o -MF mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o.d -o mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_nonwhite/mri_strip_nonwhite.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_strip_nonwhite/mri_strip_nonwhite.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1111/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o -MF mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o.d -o mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp: In function ‘int transform_T1_values_using_joint_pdf(MRI*, char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp:675:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 675 | fscanf(fp, " ;\n") ; | ~~~~~~^~~~~~~~~~~~ [1112/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o -MF mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o.d -o mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfacemask/mri_surfacemask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfacemask/mri_surfacemask.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1113/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o -MF mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o.d -o mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_topologycorrection/mri_topologycorrection.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_topologycorrection/mri_topologycorrection.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1114/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o -MF mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o.d -o mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp:174:56: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (write(fd, line, (strlen(line))*sizeof(char)) < (strlen(line))*sizeof(char)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1115/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o -MF mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o.d -o mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_transform/mri_transform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_transform/mri_transform.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1116/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o -MF mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o.d -o mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp:51: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp:314:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 314 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1117/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o -MF mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o.d -o mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_twoclass/mri_twoclass.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_twoclass/mri_twoclass.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1118/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o -MF mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o.d -o mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp:211:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp:1085:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1085 | fscanf(fp,"%lf",&fwhm); | ~~~~~~^~~~~~~~~~~~~~~~ [1119/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o -MF mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o.d -o mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volsynth/mri_volsynth.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_volsynth/mri_volsynth.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1120/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o -MF mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o.d -o mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_xvolavg/mri_xvolavg.cpp [1121/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_warp_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o -MF mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o.d -o mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_warp_convert/mri_warp_convert.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_warp_convert/mri_warp_convert.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1122/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/glut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o -MF mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o.d -o mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris2rgb/texfont.cpp [1123/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o -MF mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o.d -o mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp:47: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp:94:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 94 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1124/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o -MF mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o.d -o mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp:153:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1125/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o -MF mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o.d -o mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_to_segmentation/mris_annot_to_segmentation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_to_segmentation/mris_annot_to_segmentation.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1126/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/glut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o -MF mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o.d -o mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘void grabPixelsTIFF(unsigned int, unsigned int, unsigned char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:1135:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1135 | for (i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1128/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o -MF mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o.d -o mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_average_curvature/mris_average_curvature.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_average_curvature/mris_average_curvature.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1129/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_apply_reg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o -MF mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o.d -o mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp:56: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp:124:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1130/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o -MF mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o.d -o mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_BA_segment/mris_BA_segment.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_BA_segment/mris_BA_segment.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1131/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o -MF mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o.d -o mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_train/mris_ca_train.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_train/mris_ca_train.cpp:44: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1132/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o -MF mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o.d -o mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_acorr/mris_compute_acorr.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_acorr/mris_compute_acorr.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1133/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o -MF mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o.d -o mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_overlap/mris_compute_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_overlap/mris_compute_overlap.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1134/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o -MF mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o.d -o mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp:69:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1135/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o -MF mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o.d -o mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:49: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp: In function ‘void calcMeanMinLabelDistances()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:930:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 930 | surf1BoundaryLabels[cti].annotation != 0xFFFFFFFF) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:1032:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1032 | surf2BoundaryLabels[cti].annotation != 0xFFFFFFFF) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:1127:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1127 | surf1BoundaryLabels[cti].annotation != 0xFFFFFFFF) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp: In function ‘void padWhite(char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:1496:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1496 | while (strlen(str) < maxLen) | ~~~~~~~~~~~~^~~~~~~~ [1136/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o -MF mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o.d -o mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_copy_header/mris_copy_header.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_copy_header/mris_copy_header.cpp:10: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_copy_header/mris_copy_header.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1137/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o -MF mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o.d -o mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_congeal/mris_congeal.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_congeal/mris_congeal.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1138/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o -MF mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o.d -o mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_ca_deform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_ca_deform.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1139/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o -MF mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o.d -o mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_nudge.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_nudge.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1140/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o -MF mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o.d -o mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_map/mris_distance_map.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_map/mris_distance_map.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1141/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o -MF mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o.d -o mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/utils.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/macros.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp:29: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [1142/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o -MF mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o.d -o mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_entropy/mris_entropy.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_entropy/mris_entropy.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1143/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o -MF mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o.d -o mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_transform/mris_distance_transform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_distance_transform/mris_distance_transform.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1144/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o -MF mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o.d -o mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_errors/mris_errors.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_errors/mris_errors.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1145/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o -MF mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o.d -o mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_deform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_deform.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_deform.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1146/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o -MF mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o.d -o mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_extract_patches/mris_extract_patches.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_extract_patches/mris_extract_patches.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1147/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o -MF mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o.d -o mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_expand/mris_expand.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_expand/mris_expand.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1148/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o -MF mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o.d -o mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fill/mris_fill.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fill/mris_fill.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1149/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_find_flat_regions -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o -MF mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o.d -o mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1150/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o -MF mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o.d -o mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/utils.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/macros.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:29: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp: In function ‘int get_option(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:777:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 777 | for(n=0; n < segidlist.size(); n++) printf("%d ",segidlist[n]); | ~~^~~~~~~~~~~~~~~~~~ [1151/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o -MF mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o.d -o mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp:120: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp:224:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 224 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1152/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o -MF mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o.d -o mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_hausdorff_dist/mris_hausdorff_dist.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_hausdorff_dist/mris_hausdorff_dist.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1153/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o -MF mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o.d -o mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label_area/mris_label_area.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label_area/mris_label_area.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1154/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o -MF mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o.d -o mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_init_global_tractography/mris_init_global_tractography.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_init_global_tractography/mris_init_global_tractography.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1155/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o -MF mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o.d -o mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_interpolate_warp/mris_interpolate_warp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_interpolate_warp/mris_interpolate_warp.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1156/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o -MF mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o.d -o mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label_calc/mris_label_calc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label_calc/mris_label_calc.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1157/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o -MF mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o.d -o mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label_mode/mris_label_mode.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label_mode/mris_label_mode.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1158/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o -MF mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o.d -o mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_average_surface/mris_make_average_surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_average_surface/mris_make_average_surface.cpp:102: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1159/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o -MF mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o.d -o mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp:408:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 408 | for (sno = 0; sno < SURFACES ; sno++) | ^ [1160/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o -MF mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o.d -o mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_map_cuts/mris_map_cuts.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_map_cuts/mris_map_cuts.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1161/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o -MF mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o.d -o mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_merge_parcellations/mris_merge_parcellations.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_merge_parcellations/mris_merge_parcellations.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1162/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o -MF mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o.d -o mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_face_parcellation/mris_make_face_parcellation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_face_parcellation/mris_make_face_parcellation.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1163/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/abs2rel.cpp [1164/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o -MF mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o.d -o mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_morph_stats/mris_morph_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_morph_stats/mris_morph_stats.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1165/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5part -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -I/usr/include/double-conversion -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o -MF mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o.d -o mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:104:7: warning: declaration of ‘char* basename(char*)’ has a different exception specifier 104 | char *basename (char* path) | ^~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/macros.h:97, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:28: /usr/include/string.h:535:20: note: from previous declaration ‘char* basename(char*) noexcept’ 535 | extern "C++" char *basename (char *__filename) | ^~~~~~~~ [1166/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o -MF mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o.d -o mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_multiscale_stats/mris_multiscale_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_multiscale_stats/mris_multiscale_stats.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1167/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o -MF mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o.d -o mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp:93:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 93 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1168/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o -MF mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o.d -o mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_parcellate_connectivity/mris_parcellate_connectivity.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_parcellate_connectivity/mris_parcellate_connectivity.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1169/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o -MF mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o.d -o mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1170/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_label.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_label.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1171/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_SSocket.cpp [1172/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmOverlay.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmOverlay.h:33, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmOverlay.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1173/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_SMessage.cpp [1174/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmProg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmProg.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmProg.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1175/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_vertex.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_vertex.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_vertex.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1176/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_surface.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_surface.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1177/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/oclDijkstraKernel.cpp [1178/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp: In function ‘char* rel2abs(const char*, const char*, char*, size_t)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp:68:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 68 | if (length >= size) | ~~~~~~~^~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp:119:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 119 | if (length >= size) | ~~~~~~~^~~~~~~ [1179/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/dijkstra.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/dijkstra.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/dijkstra.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1180/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/asynch.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/asynch.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1181/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1182/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/mris_pmake.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/mris_pmake.cpp:50: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1183/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1184/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/scanopt.cpp [1185/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/surface.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/surface.cpp:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1186/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1187/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1188/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o -MF mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o.d -o mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 334 | for (n = 0 ; n < SUBCORTICAL_LABEL_COUNT ; n++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp:185:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1189/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o -MF mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o.d -o mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_volume.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_volume.cpp:105: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1190/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o -MF mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o.d -o mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remove_variance/mris_remove_variance.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remove_variance/mris_remove_variance.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1191/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o -MF mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o.d -o mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_label.cpp:98: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1192/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o -MF mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o.d -o mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/mris_remesh.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/mris_remesh.cpp:2: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1193/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o -MF mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o.d -o mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rescale/mris_rescale.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rescale/mris_rescale.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1194/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o -MF mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o.d -o mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reverse/mris_reverse.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reverse/mris_reverse.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1195/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o -MF mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o.d -o mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rf_label/mris_rf_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rf_label/mris_rf_label.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1196/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o -MF mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o.d -o mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rf_train/mris_rf_train.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rf_train/mris_rf_train.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1197/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o -MF mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o.d -o mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rotate/mris_rotate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_rotate/mris_rotate.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1198/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o -MF mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o.d -o mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sample_label/mris_sample_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sample_label/mris_sample_label.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1199/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o -MF mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o.d -o mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sample_parc/mris_sample_parc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sample_parc/mris_sample_parc.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1200/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o -MF mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o.d -o mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp:80: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp:140:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 140 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1201/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o -MF mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o.d -o mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_segment_vals/mris_segment_vals.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_segment_vals/mris_segment_vals.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1202/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o -MF mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o.d -o mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_segment/mris_segment.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_segment/mris_segment.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1203/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_reposition_surface -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o -MF mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o.d -o mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp:7: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp:63:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | for (int i = 0; i < js_pts.size(); i++) { | ~~^~~~~~~~~~~~~~~ [1204/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o -MF mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o.d -o mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.h:8, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp: In constructor ‘Remesher::Remesher(const MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp:19:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 19 | for (unsigned int i = 0; i < surf->nvertices; i++) { | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp:27:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 27 | for (unsigned int i = 0; i < surf->nfaces; i++) { | ~~^~~~~~~~~~~~~~ [1205/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o -MF mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o.d -o mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_segmentation_stats/mris_segmentation_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_segmentation_stats/mris_segmentation_stats.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1206/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o -MF mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o.d -o mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_shrinkwrap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_shrinkwrap.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1207/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o -MF mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o.d -o mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_AA_shrinkwrap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_AA_shrinkwrap.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1208/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o -MF mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o.d -o mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:137:24: warning: ‘/label/’ directive writing 7 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 137 | sprintf(fname, "%s/%s/label/%s.%s", sdir, subject, hemi, argv[3]) ; | ^~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:24: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:137:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 10 or more bytes (assuming 1033) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [1209/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o -MF mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o.d -o mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth_intracortical/mris_smooth_intracortical.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth_intracortical/mris_smooth_intracortical.cpp:57: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1210/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o -MF mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o.d -o mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spherical_average/mris_spherical_average.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spherical_average/mris_spherical_average.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1211/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o -MF mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o.d -o mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_talairach/mris_talairach.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_talairach/mris_talairach.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1212/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o -MF mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o.d -o mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_surface_to_vol_distances/mris_surface_to_vol_distances.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_surface_to_vol_distances/mris_surface_to_vol_distances.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1213/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o -MF mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o.d -o mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘std::vector > MRISspinTest::SpinPerm(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:475:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 475 | for(int k=0; k < cc.size(); k++) ccperm[n][3+k] = cc[k]; | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘std::vector MRISspinTest::PermTest(std::vector, std::vector >, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:489:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 489 | for(int n=0; n < ccperm.size(); n++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:490:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 490 | for(int k=0; k < cc.size();k++){ | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:500:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 500 | for(int k=0; k < cc.size();k++) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘int MRISspinTest::PrintMatrix(FILE*, std::vector >)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:554:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 554 | for(int n=0; n < m.size(); n++){ | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘int MRISspinTest::PrintVector(FILE*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:562:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 562 | for(int k=0; k < mrow.size(); k++) fprintf(fp,"%8.4f ",mrow[k]); | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘int MRISspinTest::PrintVectorGlmFit(FILE*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:570:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 570 | for(int c=0; c < m.size(); c++) fprintf(fp,"%2d %8.4lf\n",c,m[c]); | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:124:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1214/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o -MF mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o.d -o mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness_comparison/mris_thickness_comparison.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness_comparison/mris_thickness_comparison.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1215/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_transform -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o -MF mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o.d -o mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_transform/mris_transform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_transform/mris_transform.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1216/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o -MF mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o.d -o mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_translate_annotation/mris_translate_annotation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_translate_annotation/mris_translate_annotation.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1217/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o -MF mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o.d -o mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_volume.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_volume.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1218/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o -MF mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o.d -o mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_transmantle_dysplasia_paths/mris_transmantle_dysplasia_paths.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_transmantle_dysplasia_paths/mris_transmantle_dysplasia_paths.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1219/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o -MF mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o.d -o mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_wm_volume.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_wm_volume.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1220/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o -MF mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o.d -o mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp:81:7: warning: declaration of ‘char* basename(char*)’ has a different exception specifier 81 | char *basename (char* path) | ^~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/macros.h:97, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp:29: /usr/include/string.h:535:20: note: from previous declaration ‘char* basename(char*) noexcept’ 535 | extern "C++" char *basename (char *__filename) | ^~~~~~~~ [1221/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o -MF mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o.d -o mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_watershed/mris_watershed.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_watershed/mris_watershed.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1222/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_write -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o -MF mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o.d -o mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_write/mrisp_write.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_write/mrisp_write.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1223/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/nmovie_qt -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -MD -MT nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o -MF nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o.d -o nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/mocs_compilation.cpp [1224/1580] : && /usr/bin/cmake -E rm -f qdecproject/libqdecproject.a && /usr/bin/ar qc qdecproject/libqdecproject.a qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecDataTable.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFit.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecProject.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecSubject.cxx.o && /usr/bin/ranlib qdecproject/libqdecproject.a 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o -MF oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o.d -o oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/oct_register_mosaic/oct_register_mosaic.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/oct_register_mosaic/oct_register_mosaic.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1231/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT template/CMakeFiles/template.dir/template.cpp.o -MF template/CMakeFiles/template.dir/template.cpp.o.d -o template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/template/template.cpp [1232/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o -MF stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o.d -o stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/stat_normalize/stat_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/stat_normalize/stat_normalize.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1234/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT tridec/CMakeFiles/tridec.dir/tridec.cpp.o -MF tridec/CMakeFiles/tridec.dir/tridec.cpp.o.d -o tridec/CMakeFiles/tridec.dir/tridec.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:90:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(line,STRLEN,fp1); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:97:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets(line,STRLEN,fp1); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:102:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:105:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 105 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:110:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 110 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ [1235/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT unittests/CMakeFiles/testchklc.dir/testchklc.cpp.o -MF unittests/CMakeFiles/testchklc.dir/testchklc.cpp.o.d -o unittests/CMakeFiles/testchklc.dir/testchklc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/unittests/testchklc.cpp [1237/1580] : && /usr/bin/cmake -E rm -f packages/svm/libsvm.a && /usr/bin/ar qc packages/svm/libsvm.a packages/svm/CMakeFiles/svm.dir/svm-data-param.cpp.o packages/svm/CMakeFiles/svm.dir/svm-kernel.cpp.o packages/svm/CMakeFiles/svm.dir/svm-lib-c.cpp.o packages/svm/CMakeFiles/svm.dir/svm-lib.cpp.o packages/svm/CMakeFiles/svm.dir/svm-model.cpp.o packages/svm/CMakeFiles/svm.dir/svm-param.cpp.o packages/svm/CMakeFiles/svm.dir/svm-similarity.cpp.o packages/svm/CMakeFiles/svm.dir/svm-sketch.cpp.o && /usr/bin/ranlib packages/svm/libsvm.a && : [1238/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT test_makevol/CMakeFiles/makevol.dir/main.cpp.o -MF test_makevol/CMakeFiles/makevol.dir/main.cpp.o.d 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT swi_processing/CMakeFiles/swi_process.dir/swi_process.cpp.o -MF swi_processing/CMakeFiles/swi_process.dir/swi_process.cpp.o.d -o swi_processing/CMakeFiles/swi_process.dir/swi_process.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/swi_processing/swi_process.cpp [1240/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT swi_processing/CMakeFiles/swi_process.dir/cmd_line_interface.cpp.o -MF swi_processing/CMakeFiles/swi_process.dir/cmd_line_interface.cpp.o.d -o swi_processing/CMakeFiles/swi_process.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/swi_processing/cmd_line_interface.cpp [1241/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT swi_processing/CMakeFiles/swi_preprocess.dir/cmd_line_interface.cpp.o -MF swi_processing/CMakeFiles/swi_preprocess.dir/cmd_line_interface.cpp.o.d -o swi_processing/CMakeFiles/swi_preprocess.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/swi_processing/cmd_line_interface.cpp [1242/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/nmovie_qt -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -MD -MT nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o -MF nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o.d -o nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/nmovie_qt/main.cpp [1243/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o -MF ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o.d -o ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/ventfix/ventfix_main.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/volcluster.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/ventfix.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/ventfix/ventfix_main.cpp:4: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1244/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=utils/CMakeFiles/fsPrintHelp.dir/link.d utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -o utils/fsPrintHelp -lxml2 /usr/lib64/libz.so && : [1245/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o -MF pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o.d -o pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/pointset2label/pointset2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/pointset2label/pointset2label.cpp:4: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1246/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=io/CMakeFiles/fs_temp_file.dir/link.d io/CMakeFiles/fs_temp_file.dir/fs_temp_file.cpp.o -o io/fs_temp_file utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1247/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=io/CMakeFiles/fs_temp_dir.dir/link.d io/CMakeFiles/fs_temp_dir.dir/fs_temp_dir.cpp.o -o io/fs_temp_dir utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1248/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=lta_convert/CMakeFiles/lta_convert.dir/link.d lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -o lta_convert/lta_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1249/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_and/CMakeFiles/mri_and.dir/link.d mri_and/CMakeFiles/mri_and.dir/mri_and.cpp.o -o mri_and/mri_and utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1250/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_and/CMakeFiles/mri_or.dir/link.d mri_and/CMakeFiles/mri_or.dir/mri_or.cpp.o -o mri_and/mri_or utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1251/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/link.d mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -o mri_add_xform_to_header/mri_add_xform_to_header utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1252/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/link.d AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -o AntsDenoiseImageFs/AntsDenoiseImageFs utils/libutils.a /usr/lib64/libITKCommon-5.4.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm -lm -ldl && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1253/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/link.d AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -o AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs utils/libutils.a /usr/lib64/libITKCommon-5.4.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm -lm -ldl && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1254/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_annotation2label/CMakeFiles/mri_annotation2label.dir/link.d mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -o mri_annotation2label/mri_annotation2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1255/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/link.d mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -o mri_aparc2aseg/mri_aparc2aseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1256/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/link.d mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -o mri_aparc2wmseg/mri_aparc2wmseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1257/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/link.d mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -o mri_aparc2aseg/mri_surf2volseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1258/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/link.d mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -o mri_brainvol_stats/mri_brainvol_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1259/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_binarize/CMakeFiles/mri_binarize.dir/link.d mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -o mri_binarize/mri_binarize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1260/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/link.d mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -o mri_ca_normalize/mri_ca_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1261/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cc/CMakeFiles/mri_cc.dir/link.d mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -o mri_cc/mri_cc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1262/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_label/CMakeFiles/mri_ca_label.dir/link.d mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -o mri_ca_label/mri_ca_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1263/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_register/CMakeFiles/mri_ca_register.dir/link.d mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -o mri_ca_register/mri_ca_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1264/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/link.d mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -o mri_compute_seg_overlap/mri_compute_seg_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1265/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/link.d mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -o mri_compute_overlap/mri_compute_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1266/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concat/CMakeFiles/mri_concat.dir/link.d mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -o mri_concat/mri_concat utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1267/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/link.d mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -o mri_concatenate_lta/mri_concatenate_lta utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1268/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_convert/CMakeFiles/mri_convert.dir/link.d mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -o mri_convert/mri_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1269/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_convert/CMakeFiles/mri_make_uchar.dir/link.d mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -o mri_convert/mri_make_uchar utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1270/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_coreg/CMakeFiles/mri_coreg.dir/link.d mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -o mri_coreg/mri_coreg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1271/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_deface/CMakeFiles/mri_deface.dir/link.d mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -o mri_deface/mri_deface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1272/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_diff/CMakeFiles/mri_diff.dir/link.d mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -o mri_diff/mri_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1273/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/link.d mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -o mri_edit_segmentation/mri_edit_segmentation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1274/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dualperm/CMakeFiles/mri_dualperm.dir/link.d mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -o mri_dualperm/mri_dualperm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1275/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_deface/CMakeFiles/mri_defacer.dir/link.d mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -o mri_deface/mri_defacer utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1276/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/link.d mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -o mri_edit_wm_with_aseg/mri_edit_wm_with_aseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1277/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/link.d mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -o mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1278/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_em_register/CMakeFiles/mri_em_register.dir/link.d mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -o mri_em_register/mri_em_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1279/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/link.d mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -o mri_extract_largest_CC/mri_extract_largest_CC utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1280/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/link.d mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -o mri_fuse_segmentations/mri_fuse_segmentations utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1281/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fill/CMakeFiles/mri_fill.dir/link.d mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -o mri_fill/mri_fill utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1282/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gcut/CMakeFiles/mri_gcut.dir/link.d mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -o mri_gcut/mri_gcut utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1283/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fwhm/CMakeFiles/mri_fwhm.dir/link.d mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -o mri_fwhm/mri_fwhm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1284/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/link.d mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -o mri_matrix_multiply/mri_matrix_multiply utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1285/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_info/CMakeFiles/mri_info.dir/link.d mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -o mri_info/mri_info utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1286/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label2label/CMakeFiles/mri_label2label.dir/link.d mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -o mri_label2label/mri_label2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1287/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/link.d mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -o mri_log_likelihood/mri_log_likelihood utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1288/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label2vol/CMakeFiles/mri_label2vol.dir/link.d mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -o mri_label2vol/mri_label2vol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1289/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mask/CMakeFiles/mri_mask.dir/link.d mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -o mri_mask/mri_mask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1290/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mri_pretess.dir/link.d mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -o mri_mc/mri_pretess utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1291/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mri_mc.dir/link.d mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -o mri_mc/mri_mc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1292/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_probedicom/CMakeFiles/mri_probedicom.dir/link.d mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -o mri_probedicom/mri_probedicom utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1293/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mris_extract_main_component.dir/link.d mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -o mri_mc/mris_extract_main_component utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1294/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize/CMakeFiles/mri_normalize.dir/link.d mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -o mri_normalize/mri_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1295/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize/CMakeFiles/mri_long_normalize.dir/link.d mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -o mri_normalize/mri_long_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1296/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/link.d mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -o mri_normalize_tp2/mri_normalize_tp2 utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1297/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_refine_seg/CMakeFiles/mri_refine_seg.dir/link.d mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -o mri_refine_seg/mri_refine_seg utils/libutils.a utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1298/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_remove_neck/CMakeFiles/mri_remove_neck.dir/link.d mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -o mri_remove_neck/mri_remove_neck utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1299/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/link.d mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -o mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1300/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/link.d mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -o mri_relabel_hypointensities/mri_relabel_hypointensities utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1301/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_robust_register.dir/link.d mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -o mri_robust_register/mri_robust_register utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/aarch64-redhat-linux/15/libgfortran.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp: In function ‘minmax’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:45:53: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 [1302/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/lta_diff.dir/link.d mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -o mri_robust_register/lta_diff utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/aarch64-redhat-linux/15/libgfortran.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1303/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_create_tests.dir/link.d mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -o mri_robust_register/mri_create_tests utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/aarch64-redhat-linux/15/libgfortran.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1304/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_robust_template.dir/link.d mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -o mri_robust_register/mri_robust_template utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/aarch64-redhat-linux/15/libgfortran.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp: In function ‘medianI’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp:2030:65: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 [1305/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_gradient_info.dir/link.d mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -o mri_robust_register/mri_gradient_info utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/aarch64-redhat-linux/15/libgfortran.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1306/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seg_diff/CMakeFiles/mri_seg_diff.dir/link.d mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -o mri_seg_diff/mri_seg_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1307/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/link.d mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -o mri_seg_overlap/mri_seg_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1308/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segment/CMakeFiles/mri_segment.dir/link.d mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -o mri_segment/mri_segment utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1309/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_si_prep/CMakeFiles/mri_si_prep.dir/link.d mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -o mri_si_prep/mri_si_prep utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1310/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segreg/CMakeFiles/mri_segreg.dir/link.d mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -o mri_segreg/mri_segreg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1311/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_tessellate/CMakeFiles/ico_supersample.dir/link.d mri_tessellate/CMakeFiles/ico_supersample.dir/ico_supersample.cpp.o -o mri_tessellate/ico_supersample utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : [1312/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segstats/CMakeFiles/mri_segstats.dir/link.d mri_segstats/CMakeFiles/mri_segstats.dir/mri_segstats.cpp.o -o mri_segstats/mri_segstats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1313/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_stats2seg/CMakeFiles/mri_stats2seg.dir/link.d mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -o mri_stats2seg/mri_stats2seg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1314/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surf2surf/CMakeFiles/mri_surf2surf.dir/link.d mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -o mri_surf2surf/mri_surf2surf utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1315/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surf2vol/CMakeFiles/mri_surf2vol.dir/link.d mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -o mri_surf2vol/mri_surf2vol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1316/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surfcluster/CMakeFiles/mri_surfcluster.dir/link.d mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -o mri_surfcluster/mri_surfcluster utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1317/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_tessellate/CMakeFiles/mri_tessellate.dir/link.d mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -o mri_tessellate/mri_tessellate utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1318/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_voldiff/CMakeFiles/mri_voldiff.dir/link.d mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -o mri_voldiff/mri_voldiff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1319/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_vol2surf/CMakeFiles/mri_vol2surf.dir/link.d mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -o mri_vol2surf/mri_vol2surf utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1320/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_vol2vol/CMakeFiles/mri_vol2vol.dir/link.d mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -o mri_vol2vol/mri_vol2vol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1321/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/CMakeFiles/mri_watershed.dir/link.d mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -o mri_watershed/mri_watershed utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:170:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:172:17: note: the first difference of corresponding definitions is field ‘type’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1322/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/link.d mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -o mri_watershed/mri_validate_skull_stripped utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1323/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/link.d mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -o mri_watershed/brain_volume/mri_brain_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:70:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:71:17: note: the first difference of corresponding definitions is field ‘type’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1324/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_annot_diff/CMakeFiles/mris_annot_diff.dir/link.d mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -o mris_annot_diff/mris_annot_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1325/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/link.d mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -o mris_anatomical_stats/mris_anatomical_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1326/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_calc/CMakeFiles/mris_calc.dir/link.d mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -o mris_calc/mris_calc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1327/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ca_label/CMakeFiles/mris_ca_label.dir/link.d mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -o mris_ca_label/mris_ca_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘MRISsegmentAnnotated’, inlined from ‘GCSArelabelIslands.constprop.isra’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:2487:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15197:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘GCSArelabelIslands.constprop.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1328/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_convert/CMakeFiles/mris_convert.dir/link.d mris_convert/CMakeFiles/mris_convert.dir/mris_convert.cpp.o -o mris_convert/mris_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1329/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_curvature/CMakeFiles/mris_curvature.dir/link.d mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -o mris_curvature/mris_curvature utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1330/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/link.d mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -o mris_curvature_stats/mris_curvature_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1331/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/link.d mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -o mris_defects_pointset/mris_defects_pointset utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1332/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_diff/CMakeFiles/mris_diff.dir/link.d mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -o mris_diff/mris_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1333/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/link.d mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -o mris_divide_parcellation/mris_divide_parcellation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1334/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_euler_number/CMakeFiles/mris_euler_number.dir/link.d mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -o mris_euler_number/mris_euler_number utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1335/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/link.d mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -o mris_fix_topology/mris_remove_intersection utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1336/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fix_topology/CMakeFiles/mris_fix_topology.dir/link.d mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -o mris_fix_topology/mris_fix_topology utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1337/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_inflate/CMakeFiles/mris_inflate.dir/link.d mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -o mris_inflate/mris_inflate utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1338/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_info/CMakeFiles/mris_info.dir/link.d mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -o mris_info/mris_info utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1339/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_jacobian/CMakeFiles/mris_jacobian.dir/link.d mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -o mris_jacobian/mris_jacobian utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1340/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label2annot/CMakeFiles/mris_label2annot.dir/link.d mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -o mris_label2annot/mris_label2annot utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1341/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_left_right_register/CMakeFiles/mris_left_right_register.dir/link.d mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -o mris_left_right_register/mris_left_right_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1342/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_target_pos.dir/link.d mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -o mris_make_surfaces/mris_target_pos utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1343/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -o mris_make_surfaces/mris_make_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1344/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_place_surface.dir/link.d mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -o mris_make_surfaces/mris_place_surface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1345/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mri_stopmask.dir/link.d mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -o mris_make_surfaces/mri_stopmask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1346/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/link.d mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -o mris_make_surfaces/mris_autodet_gwstats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1347/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -o mris_make_surfaces/mris_mef_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1348/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -o mris_make_surfaces/mris_refine_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1349/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/mris_exvivo_surfaces.cpp.o -o mris_make_surfaces/mris_exvivo_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1350/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_skeletonize/CMakeFiles/mris_skeletonize.dir/link.d mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -o mris_skeletonize/mris_skeletonize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1351/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register/CMakeFiles/mris_register.dir/link.d mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -o mris_register/mris_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1352/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_smooth/CMakeFiles/mris_smooth.dir/link.d mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -o mris_smooth/mris_smooth utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1353/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/link.d mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -o mris_sphere/mris_remove_negative_vertices utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1354/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sphere/CMakeFiles/mris_sphere.dir/link.d mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -o mris_sphere/mris_sphere utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1355/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_surface_stats/CMakeFiles/mris_surface_stats.dir/link.d mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -o mris_surface_stats/mris_surface_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1356/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_thickness.dir/link.d mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -o mris_thickness/mris_thickness utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1357/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_gradient.dir/link.d mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -o mris_thickness/mris_gradient utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1358/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_intensity_profile.dir/link.d mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -o mris_thickness/mris_intensity_profile utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1359/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/link.d mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -o mris_thickness_diff/mris_thickness_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1360/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/analyzeto4dfp.dir/link.d talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -o talairach_avi/analyzeto4dfp && : [1361/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/4dfptoanalyze.dir/link.d talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -o talairach_avi/4dfptoanalyze && : [1362/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/flip_4dfp.dir/link.d talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -o talairach_avi/flip_4dfp && : [1363/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/zero_lt_4dfp.dir/link.d talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -o talairach_avi/zero_lt_4dfp && : [1364/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/ifh2hdr.dir/link.d talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -o talairach_avi/ifh2hdr && : [1365/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/link.d mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -o mris_topo_fixer/mris_topo_fixer utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp: In member function ‘_OverAlloc’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:94:54: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:105:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here In member function ‘_Allocate’, inlined from ‘__ct ’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:35:12, inlined from ‘MRIStoSurface’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:928:66: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:83:36: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new: In function ‘MRIStoSurface’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here In member function ‘_Allocate’, inlined from ‘__ct ’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:35:12, inlined from ‘MRIStoSurface’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:928:66: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:86:28: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new: In function ‘MRIStoSurface’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here [1366/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volmask/CMakeFiles/mris_volmask.dir/link.d mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -o mris_volmask/mris_volmask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1367/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/gauss_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f.o -o talairach_avi/gauss_4dfp && : [1368/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/imgreg_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -o talairach_avi/imgreg_4dfp && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:40:17: warning: type of ‘t4file2param_’ does not match original declaration [-Wlto-type-mismatch] 40 | extern void t4file2param_ (int *mode, char *t4file, float *params); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: type mismatch in parameter 4 41 | subroutine t4file2param(mode,t4_file,param) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: ‘t4file2param’ was previously declared here [1369/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/compute_vox2vox.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o -o talairach_avi/compute_vox2vox && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:64:21: warning: type of ‘set_rnan’ does not match original declaration [-Wlto-type-mismatch] 64 | call set_rnan(imgo(kx,ky,kz)) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: ‘set_rnan’ was previously declared here 1 | subroutine set_rnan(a) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/compute_vox2vox.c:35:17: warning: type of ‘t4_read_’ does not match original declaration [-Wlto-type-mismatch] 35 | extern void t4_read_ (char *t4file, float *t4); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type mismatch in parameter 3 91 | subroutine t4_read(t4_file,t4) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: ‘t4_read’ was previously declared here [1370/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f.o -o talairach_avi/t4imgs_4dfp && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:64:21: warning: type of ‘set_rnan’ does not match original declaration [-Wlto-type-mismatch] 64 | call set_rnan(imgo(kx,ky,kz)) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: ‘set_rnan’ was previously declared here 1 | subroutine set_rnan(a) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c:41:17: warning: type of ‘t4_read_’ does not match original declaration [-Wlto-type-mismatch] 41 | extern void t4_read_ (char *t4file, float *t4); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type mismatch in parameter 3 91 | subroutine t4_read(t4_file,t4) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: ‘t4_read’ was previously declared here [1371/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was 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-Wl,--dependency-file=mrisp_paint/CMakeFiles/mrisp_paint.dir/link.d mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -o mrisp_paint/mrisp_paint utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1380/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--copy-dt-needed-entries -Wl,--as-needed -Wl,--dependency-file=dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/link.d dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/dissection_photo_autogen/mocs_compilation.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/WidgetImageView.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/cnpy.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/exif.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/connected_components/MaskProcessor.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/MyUtils.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/MainWindow.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/ProgressWindow.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/main.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/dissection_photo_autogen/EWIEGA46WW/qrc_dissection_photo.cpp.o -o dissection_photo/dissection_photo/dissection_photo /usr/lib64/libQt6Widgets.so.6.10.3 /usr/lib64/libQt6Gui.so.6.10.3 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.10.3 && : [1381/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--as-needed -Wl,--dependency-file=mris_volmask/CMakeFiles/mris_volmask_vtk.dir/link.d mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o -o mris_volmask/mris_volmask_vtk utils/libutils.a /usr/lib64/libvtkWrappingTools.so.1 /usr/lib64/libvtkViewsQt.so.1 /usr/lib64/libvtkViewsInfovis.so.1 /usr/lib64/libvtkViewsContext2D.so.1 /usr/lib64/libvtkViewsCore.so.1 /usr/lib64/libvtkTestingRendering.so.1 /usr/lib64/libvtkTestingCore.so.1 /usr/lib64/libvtkRenderingVolumeAMR.so.1 /usr/lib64/libvtkRenderingQt.so.1 /usr/lib64/libvtkPythonContext2D.so.1 /usr/lib64/libvtkRenderingParallel.so.1 /usr/lib64/libvtkRenderingVRModels.so.1 /usr/lib64/libvtkRenderingMatplotlib.so.1 /usr/lib64/libvtkRenderingLabel.so.1 /usr/lib64/libvtkRenderingLOD.so.1 /usr/lib64/libvtkRenderingLICOpenGL2.so.1 /usr/lib64/libvtkRenderingImage.so.1 /usr/lib64/libvtkRenderingGridAxes.so.1 /usr/lib64/libvtkRenderingExternal.so.1 /usr/lib64/libvtkRenderingContextOpenGL2.so.1 /usr/lib64/libvtkRenderingCellGrid.so.1 /usr/lib64/libvtkRenderingVolumeOpenGL2.so.1 /usr/lib64/libvtkIOXdmf2.so.1 /usr/lib64/libvtkxdmf2.so.1 /usr/lib64/libvtkIOVeraOut.so.1 /usr/lib64/libvtkIOVPIC.so.1 /usr/lib64/libvtkvpic.so.1 /usr/lib64/libvtkIOTecplotTable.so.1 /usr/lib64/libvtkIOTRUCHAS.so.1 /usr/lib64/libvtkIOSegY.so.1 /usr/lib64/libvtkIOParallelXML.so.1 /usr/lib64/libvtkIOParallelLSDyna.so.1 /usr/lib64/libvtkIOParallelExodus.so.1 /usr/lib64/libvtkIOPLY.so.1 /usr/lib64/libvtkIOPIO.so.1 /usr/lib64/libvtkIOOggTheora.so.1 /usr/lib64/libvtkIOOMF.so.1 /usr/lib64/libvtkIONetCDF.so.1 /usr/lib64/libvtkIOMotionFX.so.1 /usr/lib64/libvtkIOParallel.so.1 /usr/lib64/libvtkIOMINC.so.1 /usr/lib64/libvtkIOLSDyna.so.1 /usr/lib64/libvtkIOLANLX3D.so.1 /usr/lib64/libvtkIOImport.so.1 /usr/lib64/libvtkIOIOSS.so.1 /usr/lib64/libvtkioss.so.1 /usr/lib64/libvtkIOHDF.so.1 /usr/lib64/libvtkIOH5part.so.1 /usr/lib64/libvtkh5part.so.1 /usr/lib64/libvtkIOH5Rage.so.1 /usr/lib64/libvtkIOFLUENTCFF.so.1 /usr/lib64/libvtkIOVideo.so.1 /usr/lib64/libvtkIOMovie.so.1 /usr/lib64/libvtkIOFDS.so.1 /usr/lib64/libvtkIOInfovis.so.1 /usr/lib64/libvtkIOExportPDF.so.1 /usr/lib64/libvtkIOExportGL2PS.so.1 /usr/lib64/libvtkRenderingGL2PSOpenGL2.so.1 /usr/lib64/libvtkgl2ps.so.1 /usr/lib64/libvtkIOExodus.so.1 /usr/lib64/libvtkIOEngys.so.1 /usr/lib64/libvtkIOEnSight.so.1 /usr/lib64/libvtkIOERF.so.1 /usr/lib64/libvtkIOCityGML.so.1 /usr/lib64/libvtkIOChemistry.so.1 /usr/lib64/libvtkIOCesium3DTiles.so.1 /usr/lib64/libvtkIOCONVERGECFD.so.1 /usr/lib64/libvtkIOCGNSReader.so.1 /usr/lib64/libvtkIOAvmesh.so.1 /usr/lib64/libvtkIOAsynchronous.so.1 /usr/lib64/libvtkIOExport.so.1 /usr/lib64/libvtkRenderingVtkJS.so.1 /usr/lib64/libvtkIOGeometry.so.1 /usr/lib64/libvtkRenderingSceneGraph.so.1 /usr/lib64/libvtkIOAMR.so.1 /usr/lib64/libvtkInteractionImage.so.1 /usr/lib64/libvtkInfovisLayout.so.1 /usr/lib64/libvtkImagingStencil.so.1 /usr/lib64/libvtkImagingStatistics.so.1 /usr/lib64/libvtkImagingOpenGL2.so.1 /usr/lib64/libvtkImagingMorphological.so.1 /usr/lib64/libvtkImagingMath.so.1 /usr/lib64/libvtkImagingFourier.so.1 /usr/lib64/libvtkGUISupportQtSQL.so.1 /usr/lib64/libvtkIOSQL.so.1 /usr/lib64/libvtkGUISupportQtQuick.so.1 /usr/lib64/libvtkGUISupportQt.so.1 /usr/lib64/libvtkInteractionWidgets.so.1 /usr/lib64/libvtkRenderingVolume.so.1 /usr/lib64/libvtkRenderingAnnotation.so.1 /usr/lib64/libvtkInteractionStyle.so.1 /usr/lib64/libvtkImagingHybrid.so.1 /usr/lib64/libvtkImagingColor.so.1 /usr/lib64/libvtkGeovisCore.so.1 /usr/lib64/libvtkFiltersTopology.so.1 /usr/lib64/libvtkFiltersTensor.so.1 /usr/lib64/libvtkFiltersSelection.so.1 /usr/lib64/libvtkFiltersSMP.so.1 /usr/lib64/libvtkFiltersPython.so.1 /usr/lib64/libvtkFiltersProgrammable.so.1 /usr/lib64/libvtkFiltersPoints.so.1 /usr/lib64/libvtkFiltersParallelVerdict.so.1 /usr/lib64/libvtkFiltersParallelStatistics.so.1 /usr/lib64/libvtkFiltersParallelImaging.so.1 /usr/lib64/libvtkFiltersParallelDIY2.so.1 /usr/lib64/libvtkFiltersTemporal.so.1 /usr/lib64/libvtkFiltersImaging.so.1 /usr/lib64/libvtkImagingGeneral.so.1 /usr/lib64/libvtkFiltersGeometryPreview.so.1 /usr/lib64/libvtkFiltersGeneric.so.1 /usr/lib64/libvtkFiltersFlowPaths.so.1 /usr/lib64/libvtkFiltersAMR.so.1 /usr/lib64/libvtkFiltersParallel.so.1 /usr/lib64/libvtkFiltersTexture.so.1 /usr/lib64/libvtkFiltersModeling.so.1 /usr/lib64/libvtkDomainsChemistryOpenGL2.so.1 /usr/lib64/libvtkRenderingOpenGL2.so.1 /usr/lib64/libvtkRenderingHyperTreeGrid.so.1 /usr/lib64/libvtkRenderingUI.so.1 /usr/lib64/libvtkFiltersHybrid.so.1 /usr/lib64/libvtkDomainsChemistry.so.1 /usr/lib64/libvtkCommonPython.so.1 /usr/lib64/libvtkChartsCore.so.1 /usr/lib64/libvtkInfovisCore.so.1 /usr/lib64/libvtkFiltersExtraction.so.1 /usr/lib64/libvtkParallelDIY.so.1 /usr/lib64/libvtkIOXML.so.1 /usr/lib64/libvtkIOXMLParser.so.1 /usr/lib64/libvtkParallelCore.so.1 /usr/lib64/libvtkIOLegacy.so.1 /usr/lib64/libvtkIOCellGrid.so.1 /usr/lib64/libvtkFiltersCellGrid.so.1 /usr/lib64/libvtkIOCore.so.1 /usr/lib64/libvtkFiltersStatistics.so.1 /usr/lib64/libvtkFiltersHyperTree.so.1 /usr/lib64/libvtkImagingSources.so.1 /usr/lib64/libvtkIOImage.so.1 /usr/lib64/libvtkDICOMParser.so.1 /usr/lib64/libvtkmetaio.so.1 /usr/lib64/libvtkRenderingContext2D.so.1 /usr/lib64/libvtkRenderingFreeType.so.1 /usr/lib64/libvtkRenderingCore.so.1 /usr/lib64/libvtkFiltersSources.so.1 /usr/lib64/libvtkImagingCore.so.1 /usr/lib64/libvtkFiltersGeneral.so.1 /usr/lib64/libvtkFiltersVerdict.so.1 /usr/lib64/libvtkverdict.so.1 /usr/lib64/libvtkFiltersGeometry.so.1 /usr/lib64/libvtkCommonComputationalGeometry.so.1 /usr/lib64/libvtkFiltersCore.so.1 /usr/lib64/libvtkFiltersReduction.so.1 /usr/lib64/libvtkCommonExecutionModel.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libvtkPythonInterpreter.so.1 /usr/lib64/libxml2.so /usr/lib64/libtheora.so /usr/lib64/libtheoraenc.so /usr/lib64/libogg.so /usr/lib64/libtheoradec.so /usr/lib64/libvtkexodusII.so.1 /usr/lib64/libnetcdf.so /usr/lib64/libhpdf.so /usr/lib64/libpng.so /usr/lib64/libz.so /usr/lib64/libjsoncpp.so /usr/lib64/libpugixml.so.1.15 /usr/lib64/libvtkcgns.so.1 /usr/lib64/libhdf5.so /usr/lib64/libhdf5_hl.so /usr/lib64/libQt6Sql.so.6.10.3 /usr/lib64/libsqlite3.so /usr/lib64/libQt6OpenGLWidgets.so.6.10.3 /usr/lib64/libQt6Widgets.so.6.10.3 /usr/lib64/libQt6Quick.so.6.10.3 /usr/lib64/libQt6OpenGL.so.6.10.3 /usr/lib64/libQt6Gui.so.6.10.3 /usr/lib64/libGL.so /usr/lib64/libQt6Qml.so.6.10.3 /usr/lib64/libQt6Network.so.6.10.3 /usr/lib64/libQt6Core.so.6.10.3 /usr/lib64/libproj.so /usr/lib64/libfmt.so.11.2.0 /usr/lib64/libvtkglad.so.1 /usr/lib64/libfreetype.so /usr/lib64/libX11.so /usr/lib64/libvtkCommonColor.so.1 /usr/lib64/libvtkCommonDataModel.so.1 /usr/lib64/libvtkCommonSystem.so.1 /usr/lib64/libvtkCommonMisc.so.1 /usr/lib64/libvtkCommonTransforms.so.1 /usr/lib64/libvtkCommonMath.so.1 /usr/lib64/libvtkkissfft.so.1 /usr/lib64/libvtkWrappingPythonCore3.14.so.1 /usr/lib64/libpython3.14.so /usr/lib64/libvtkCommonCore.so.1 /usr/lib64/libvtksys.so.1 -ldl /usr/lib64/libvtkloguru.so.1 /usr/lib64/libvtktoken.so.1 /usr/lib64/libexpat.so /usr/lib64/liblz4.so /usr/lib64/liblzma.so /usr/lib64/libjpeg.so /usr/lib64/libtiff.so /usr/lib64/libdouble-conversion.so && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1382/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_afd/CMakeFiles/talairach_afd.dir/link.d talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -o talairach_afd/talairach_afd utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1383/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=tkregister2/CMakeFiles/tkregister2_cmdl.dir/link.d tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -o tkregister2/tkregister2_cmdl utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1384/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=fslutils/CMakeFiles/fsl_label2voxel.dir/link.d fslutils/CMakeFiles/fsl_label2voxel.dir/fsl_label2voxel.cpp.o -o fslutils/fsl_label2voxel utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1385/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/link.d hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o -o hiam_make_surfaces/hiam_make_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1386/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/link.d histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/histo_compute_joint_density.cpp.o -o histo_compute_joint_density/histo_compute_joint_density utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1387/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=histo_register_block/CMakeFiles/histo_register_block.dir/link.d histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o -o histo_register_block/histo_register_block utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1388/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=histo_synthesize/CMakeFiles/histo_synthesize.dir/link.d histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o -o histo_synthesize/histo_synthesize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1389/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=hiam_make_template/CMakeFiles/hiam_make_template.dir/link.d hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o -o hiam_make_template/hiam_make_template utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1390/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=hiam_register/CMakeFiles/hiam_register.dir/link.d hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o -o hiam_register/hiam_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1391/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=label2flat/CMakeFiles/label2flat.dir/link.d label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o -o label2flat/label2flat utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1392/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=label2patch/CMakeFiles/label2patch.dir/link.d label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o -o label2patch/label2patch utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1393/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mkxsubjreg/CMakeFiles/mkxsubjreg.dir/link.d mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o -o mkxsubjreg/mkxsubjreg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1394/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_bias/CMakeFiles/mri_apply_bias.dir/link.d mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o -o mri_bias/mri_apply_bias utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1395/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_bias/CMakeFiles/mri_compute_bias.dir/link.d mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o -o mri_bias/mri_compute_bias utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1396/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_average/CMakeFiles/mri_average.dir/link.d mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o -o mri_average/mri_average utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1397/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/link.d mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o -o mri_ca_tissue_parms/mri_ca_tissue_parms utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1398/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_train/CMakeFiles/mri_ca_train.dir/link.d mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o -o mri_ca_train/mri_ca_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1399/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/link.d mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o -o mri_cal_renormalize_gca/mri_cal_renormalize_gca utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1400/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compile_edits/CMakeFiles/mri_compile_edits.dir/link.d mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o -o mri_compile_edits/mri_compile_edits utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1401/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/link.d mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o -o mri_compute_change_map/mri_compute_change_map utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1402/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cnr/CMakeFiles/mri_cnr.dir/link.d mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o -o mri_cnr/mri_cnr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1403/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/link.d mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o -o mri_compute_volume_fractions/mri_compute_volume_intensities utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1404/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/link.d mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o -o mri_compute_volume_fractions/mri_compute_volume_fractions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1405/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/link.d mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o -o mri_ctab_fix/mri_ctab_fix utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1406/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/link.d mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o -o mri_compute_volume_fractions/mri_compute_layer_fractions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1407/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_copy_values/CMakeFiles/mri_copy_values.dir/link.d mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o -o mri_copy_values/mri_copy_values utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1408/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/link.d mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o -o mri_concatenate_gcam/mri_concatenate_gcam utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1409/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/link.d mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o -o mri_compute_volume_fractions/mris_compute_layer_intensities utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1410/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/link.d mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o -o mri_correct_segmentations/mri_correct_segmentations utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1411/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cor2label/CMakeFiles/mri_cor2label.dir/link.d mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o -o mri_cor2label/mri_cor2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘LabelRemoveIslandsSurf’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/label.cpp:4180:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘LabelRemoveIslandsSurf’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1412/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dct_align/CMakeFiles/mri_dct_align.dir/link.d mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o -o 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freeview/CMakeFiles/freeview.dir/DialogLabelStatsInRange.cpp.o freeview/CMakeFiles/freeview.dir/freeview_autogen/EWIEGA46WW/qrc_freeview.cpp.o -o freeview/freeview packages/nifti/libnifti.a vtkutils/libvtkutils.a /usr/lib64/libvtkWrappingTools.so.1 /usr/lib64/libvtkViewsQt.so.1 /usr/lib64/libvtkViewsInfovis.so.1 /usr/lib64/libvtkViewsContext2D.so.1 /usr/lib64/libvtkViewsCore.so.1 /usr/lib64/libvtkTestingRendering.so.1 /usr/lib64/libvtkTestingCore.so.1 /usr/lib64/libvtkRenderingVolumeAMR.so.1 /usr/lib64/libvtkRenderingQt.so.1 /usr/lib64/libvtkPythonContext2D.so.1 /usr/lib64/libvtkRenderingParallel.so.1 /usr/lib64/libvtkRenderingVRModels.so.1 /usr/lib64/libvtkRenderingMatplotlib.so.1 /usr/lib64/libvtkRenderingLabel.so.1 /usr/lib64/libvtkRenderingLOD.so.1 /usr/lib64/libvtkRenderingLICOpenGL2.so.1 /usr/lib64/libvtkRenderingImage.so.1 /usr/lib64/libvtkRenderingGridAxes.so.1 /usr/lib64/libvtkRenderingExternal.so.1 /usr/lib64/libvtkRenderingContextOpenGL2.so.1 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/usr/lib64/libvtkIOVideo.so.1 /usr/lib64/libvtkIOMovie.so.1 /usr/lib64/libvtkIOFDS.so.1 /usr/lib64/libvtkIOInfovis.so.1 /usr/lib64/libvtkIOExportPDF.so.1 /usr/lib64/libvtkIOExportGL2PS.so.1 /usr/lib64/libvtkRenderingGL2PSOpenGL2.so.1 /usr/lib64/libvtkgl2ps.so.1 /usr/lib64/libvtkIOExodus.so.1 /usr/lib64/libvtkIOEngys.so.1 /usr/lib64/libvtkIOEnSight.so.1 /usr/lib64/libvtkIOERF.so.1 /usr/lib64/libvtkIOCityGML.so.1 /usr/lib64/libvtkIOChemistry.so.1 /usr/lib64/libvtkIOCesium3DTiles.so.1 /usr/lib64/libvtkIOCONVERGECFD.so.1 /usr/lib64/libvtkIOCGNSReader.so.1 /usr/lib64/libvtkIOAvmesh.so.1 /usr/lib64/libvtkIOAsynchronous.so.1 /usr/lib64/libvtkIOExport.so.1 /usr/lib64/libvtkRenderingVtkJS.so.1 /usr/lib64/libvtkIOGeometry.so.1 /usr/lib64/libvtkRenderingSceneGraph.so.1 /usr/lib64/libvtkIOAMR.so.1 /usr/lib64/libvtkInteractionImage.so.1 /usr/lib64/libvtkInfovisLayout.so.1 /usr/lib64/libvtkImagingStencil.so.1 /usr/lib64/libvtkImagingStatistics.so.1 /usr/lib64/libvtkImagingOpenGL2.so.1 /usr/lib64/libvtkImagingMorphological.so.1 /usr/lib64/libvtkImagingMath.so.1 /usr/lib64/libvtkImagingFourier.so.1 /usr/lib64/libvtkGUISupportQtSQL.so.1 /usr/lib64/libvtkIOSQL.so.1 /usr/lib64/libvtkGUISupportQtQuick.so.1 /usr/lib64/libvtkGUISupportQt.so.1 /usr/lib64/libvtkGeovisCore.so.1 /usr/lib64/libvtkFiltersTopology.so.1 /usr/lib64/libvtkFiltersTensor.so.1 /usr/lib64/libvtkFiltersSelection.so.1 /usr/lib64/libvtkFiltersSMP.so.1 /usr/lib64/libvtkFiltersPython.so.1 /usr/lib64/libvtkFiltersProgrammable.so.1 /usr/lib64/libvtkFiltersPoints.so.1 /usr/lib64/libvtkFiltersParallelVerdict.so.1 /usr/lib64/libvtkFiltersParallelStatistics.so.1 /usr/lib64/libvtkFiltersParallelImaging.so.1 /usr/lib64/libvtkFiltersParallelDIY2.so.1 /usr/lib64/libvtkFiltersTemporal.so.1 /usr/lib64/libvtkFiltersImaging.so.1 /usr/lib64/libvtkFiltersGeometryPreview.so.1 /usr/lib64/libvtkFiltersGeneric.so.1 /usr/lib64/libvtkFiltersFlowPaths.so.1 /usr/lib64/libvtkFiltersAMR.so.1 /usr/lib64/libvtkFiltersParallel.so.1 /usr/lib64/libvtkDomainsChemistryOpenGL2.so.1 /usr/lib64/libvtkDomainsChemistry.so.1 /usr/lib64/libvtkCommonPython.so.1 /usr/lib64/libvtkChartsCore.so.1 /usr/lib64/libvtkInfovisCore.so.1 /usr/lib64/libz.so /usr/lib64/libITKConvolution-5.4.so.1 /usr/lib64/libitkAdaptiveDenoising-5.4.so.1 /usr/lib64/libitkGrowCut-5.4.so.1 /usr/lib64/libITKColormap-5.4.so.1 /usr/lib64/libITKDICOMParser-5.4.so.1 /usr/lib64/libITKDenoising-5.4.so.1 /usr/lib64/libITKDeprecated-5.4.so.1 /usr/lib64/libexpat.so /usr/lib64/libhdf5_cpp.so /usr/lib64/libhdf5.so /usr/lib64/libhdf5_hl.so /usr/lib64/libITKIOBruker-5.4.so.1 /usr/lib64/libITKIOCSV-5.4.so.1 /usr/lib64/libITKIOHDF5-5.4.so.1 /usr/lib64/libjpeg.so /usr/lib64/libITKIOJPEG2000-5.4.so.1 /usr/lib64/libtiff.so /usr/lib64/libITKIOLSM-5.4.so.1 -lminc2 /usr/lib64/libhdf5.so -lm -ldl -lrt /usr/lib64/libnetcdf.so /usr/lib64/libITKIOMINC-5.4.so.1 /usr/lib64/libITKIOMRC-5.4.so.1 /usr/lib64/libpng.so /usr/lib64/libITKIOPhilipsREC-5.4.so.1 /usr/lib64/libITKRegistrationMethodsv4-5.4.so.1 /usr/lib64/libITKReview-5.4.so.1 /usr/lib64/libITKTestKernel-5.4.so.1 /usr/lib64/libITKVideoIO-5.4.so.1 /usr/lib64/libITKVtkGlue-5.4.so.1 /usr/lib64/libitkSimpleITKFilters-5.4.so.1 utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/aarch64-redhat-linux/15/libgfortran.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so /usr/lib64/libvtkPythonInterpreter.so.1 /usr/lib64/libxml2.so /usr/lib64/libtheora.so /usr/lib64/libtheoraenc.so /usr/lib64/libogg.so /usr/lib64/libtheoradec.so /usr/lib64/libvtkexodusII.so.1 /usr/lib64/libhpdf.so /usr/lib64/libpng.so /usr/lib64/libz.so /usr/lib64/libjsoncpp.so /usr/lib64/libpugixml.so.1.15 /usr/lib64/libvtkcgns.so.1 /usr/lib64/libhdf5.so /usr/lib64/libhdf5_hl.so /usr/lib64/libQt6Sql.so.6.10.3 /usr/lib64/libsqlite3.so /usr/lib64/libQt6OpenGLWidgets.so.6.10.3 /usr/lib64/libQt6Widgets.so.6.10.3 /usr/lib64/libQt6Quick.so.6.10.3 /usr/lib64/libQt6OpenGL.so.6.10.3 /usr/lib64/libQt6Gui.so.6.10.3 /usr/lib64/libGL.so /usr/lib64/libQt6Qml.so.6.10.3 /usr/lib64/libQt6Network.so.6.10.3 /usr/lib64/libQt6Core.so.6.10.3 /usr/lib64/libproj.so /usr/lib64/libvtkWrappingPythonCore3.14.so.1 /usr/lib64/libpython3.14.so /usr/lib64/libexpat.so /usr/lib64/liblz4.so /usr/lib64/liblzma.so /usr/lib64/libjpeg.so /usr/lib64/libtiff.so /usr/lib64/libdouble-conversion.so /usr/lib64/libnetcdf.so /usr/lib64/libITKOptimizersv4-5.4.so.1 /usr/lib64/libitklbfgs-5.4.so.1 /usr/lib64/libITKLabelMap-5.4.so.1 /usr/lib64/libITKFastMarching-5.4.so.1 /usr/lib64/libITKPolynomials-5.4.so.1 /usr/lib64/libITKBiasCorrection-5.4.so.1 /usr/lib64/libITKDeformableMesh-5.4.so.1 /usr/lib64/libITKDiffusionTensorImage-5.4.so.1 /usr/lib64/libITKPDEDeformableRegistration-5.4.so.1 /usr/lib64/libITKOptimizers-5.4.so.1 /usr/lib64/libITKIOBioRad-5.4.so.1 /usr/lib64/libITKIOGE-5.4.so.1 /usr/lib64/libitkopenjpeg-5.4.so.1 /usr/lib64/libITKIOSiemens-5.4.so.1 /usr/lib64/libITKIOIPL-5.4.so.1 /usr/lib64/libITKIOSpatialObjects-5.4.so.1 /usr/lib64/libITKIOXML-5.4.so.1 /usr/lib64/libITKIOStimulate-5.4.so.1 /usr/lib64/libITKIOTransformHDF5-5.4.so.1 /usr/lib64/libITKIOTransformInsightLegacy-5.4.so.1 /usr/lib64/libITKIOTransformMatlab-5.4.so.1 /usr/lib64/libITKIOTransformBase-5.4.so.1 /usr/lib64/libITKTransformFactory-5.4.so.1 /usr/lib64/libITKKLMRegionGrowing-5.4.so.1 /usr/lib64/libITKMarkovRandomFieldsClassifiers-5.4.so.1 /usr/lib64/libITKQuadEdgeMeshFiltering-5.4.so.1 /usr/lib64/libITKRegionGrowing-5.4.so.1 /usr/lib64/libITKWatersheds-5.4.so.1 /usr/lib64/libITKMathematicalMorphology-5.4.so.1 /usr/lib64/libITKStatistics-5.4.so.1 /usr/lib64/libitkNetlibSlatec-5.4.so.1 /usr/lib64/libITKPath-5.4.so.1 /usr/lib64/libITKFFT-5.4.so.1 /usr/lib64/libITKIOBMP-5.4.so.1 /usr/lib64/libITKIOGDCM-5.4.so.1 /usr/lib64/libgdcmMSFF.so.3.0.24 /usr/lib64/libgdcmDICT.so.3.0.24 /usr/lib64/libgdcmIOD.so.3.0.24 /usr/lib64/libgdcmDSED.so.3.0.24 /usr/lib64/libgdcmCommon.so.3.0.24 /usr/lib64/libITKIOGIPL-5.4.so.1 /usr/lib64/libITKIOJPEG-5.4.so.1 /usr/lib64/libITKIOTIFF-5.4.so.1 /usr/lib64/libITKIOMeshBYU-5.4.so.1 /usr/lib64/libITKIOMeshFreeSurfer-5.4.so.1 /usr/lib64/libITKIOMeshGifti-5.4.so.1 /usr/lib64/libITKgiftiio-5.4.so.1 /usr/lib64/libexpat.so /usr/lib64/libITKIOMeshOBJ-5.4.so.1 /usr/lib64/libITKIOMeshOFF-5.4.so.1 /usr/lib64/libITKIOMeshVTK-5.4.so.1 /usr/lib64/libITKIOMeshBase-5.4.so.1 /usr/lib64/libITKQuadEdgeMesh-5.4.so.1 /usr/lib64/libITKIOMeta-5.4.so.1 /usr/lib64/libITKMetaIO-5.4.so.1 /usr/lib64/libITKIONIFTI-5.4.so.1 /usr/lib64/libITKniftiio-5.4.so.1 /usr/lib64/libITKznz-5.4.so.1 -lm /usr/lib64/libITKIONRRD-5.4.so.1 /usr/lib64/libITKNrrdIO-5.4.so.1 /usr/lib64/libITKIOPNG-5.4.so.1 /usr/lib64/libITKIOVTK-5.4.so.1 /usr/lib64/libITKIOImageBase-5.4.so.1 /usr/lib64/libITKVideoCore-5.4.so.1 /usr/lib64/libvtkInteractionWidgets.so.1 /usr/lib64/libvtkRenderingVolume.so.1 /usr/lib64/libvtkRenderingAnnotation.so.1 /usr/lib64/libvtkImagingHybrid.so.1 /usr/lib64/libvtkImagingColor.so.1 /usr/lib64/libvtkImagingGeneral.so.1 /usr/lib64/libvtkFiltersTexture.so.1 /usr/lib64/libvtkFiltersModeling.so.1 /usr/lib64/libvtkRenderingContext2D.so.1 /usr/lib64/libvtkInteractionStyle.so.1 /usr/lib64/libvtkFiltersExtraction.so.1 /usr/lib64/libvtkParallelDIY.so.1 /usr/lib64/libfmt.so.11.2.0 /usr/lib64/libvtkIOXML.so.1 /usr/lib64/libvtkIOXMLParser.so.1 /usr/lib64/libvtkParallelCore.so.1 /usr/lib64/libvtkIOLegacy.so.1 /usr/lib64/libvtkIOCellGrid.so.1 /usr/lib64/libvtkFiltersCellGrid.so.1 /usr/lib64/libvtkIOCore.so.1 /usr/lib64/libvtkFiltersStatistics.so.1 /usr/lib64/libvtkRenderingOpenGL2.so.1 /usr/lib64/libvtkglad.so.1 /usr/lib64/libvtkRenderingHyperTreeGrid.so.1 /usr/lib64/libvtkFiltersHybrid.so.1 /usr/lib64/libvtkFiltersHyperTree.so.1 /usr/lib64/libvtkRenderingUI.so.1 /usr/lib64/libX11.so /usr/lib64/libvtkImagingSources.so.1 /usr/lib64/libvtkIOImage.so.1 /usr/lib64/libvtkDICOMParser.so.1 /usr/lib64/libvtkmetaio.so.1 /usr/lib64/libvtkImagingCore.so.1 /usr/lib64/libvtkRenderingFreeType.so.1 /usr/lib64/libfreetype.so /usr/lib64/libvtkRenderingCore.so.1 /usr/lib64/libvtkCommonColor.so.1 /usr/lib64/libvtkFiltersSources.so.1 /usr/lib64/libvtkFiltersGeneral.so.1 /usr/lib64/libvtkFiltersVerdict.so.1 /usr/lib64/libvtkverdict.so.1 /usr/lib64/libvtkFiltersGeometry.so.1 /usr/lib64/libvtkCommonComputationalGeometry.so.1 /usr/lib64/libvtkFiltersCore.so.1 /usr/lib64/libvtkFiltersReduction.so.1 /usr/lib64/libvtkCommonExecutionModel.so.1 /usr/lib64/libvtkCommonDataModel.so.1 /usr/lib64/libvtkCommonSystem.so.1 /usr/lib64/libvtkCommonMisc.so.1 /usr/lib64/libvtkCommonTransforms.so.1 /usr/lib64/libvtkCommonMath.so.1 /usr/lib64/libvtkkissfft.so.1 /usr/lib64/libvtkCommonCore.so.1 /usr/lib64/libvtksys.so.1 /usr/lib64/libvtkloguru.so.1 /usr/lib64/libvtktoken.so.1 /usr/lib64/libITKVTK-5.4.so.1 /usr/lib64/libITKImageFeature-5.4.so.1 /usr/lib64/libITKSpatialObjects-5.4.so.1 /usr/lib64/libITKMesh-5.4.so.1 /usr/lib64/libITKTransform-5.4.so.1 /usr/lib64/libITKCommon-5.4.so.1 /usr/lib64/libitkdouble-conversion-5.4.so.1 /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 -lm -ldl /usr/lib64/libITKSmoothing-5.4.so.1 packages/nifti/libnifti.a /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In member function ‘FindPath’, inlined from ‘FindPath’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/LayerSurface.cpp:2530:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2063:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2016:26: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ In function ‘find_path’, inlined from ‘find_path’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:231:6, inlined from ‘DoMakePath.isra’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:385:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:308:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:261:26: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ [1414/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/link.d mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o -o mri_dct_align/mri_dct_align_binary utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1415/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/link.d mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o -o mri_evaluate_morph/mri_evaluate_morph utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1416/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/link.d mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o -o mri_dist_surf_label/mri_dist_surf_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1417/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_distance_transform/CMakeFiles/mri_distance_transform.dir/link.d mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o -o mri_distance_transform/mri_distance_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1418/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract/CMakeFiles/mri_extract.dir/link.d mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o -o mri_extract/mri_extract utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1419/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/link.d mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o -o mri_extract_fcd_features/mri_extract_fcd_features utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1420/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_label/CMakeFiles/mri_extract_label.dir/link.d mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o -o mri_extract_label/mri_extract_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1421/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fdr/CMakeFiles/mri_fdr.dir/link.d mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o -o mri_fdr/mri_fdr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1422/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fieldsign/CMakeFiles/mri_fieldsign.dir/link.d mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o -o mri_fieldsign/mri_fieldsign utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1423/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fit_bias/CMakeFiles/mri_fit_bias.dir/link.d mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o -o mri_fit_bias/mri_fit_bias utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1424/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/link.d mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o -o mri_fslmat_to_lta/mri_fslmat_to_lta utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1425/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/link.d mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o -o mri_fuse_intensity_images/mri_fuse_intensity_images utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1426/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/link.d mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o -o mri_gca_ambiguous/mri_gca_ambiguous utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1427/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_glmfit/CMakeFiles/mri_glmfit.dir/link.d mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o -o mri_glmfit/mri_glmfit utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1428/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_glmfit/CMakeFiles/mri_mvglmfit.dir/link.d mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o -o mri_glmfit/mri_mvglmfit utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1429/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/link.d mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o -o mri_gradunwarp/mri_gradunwarp utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1430/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_head/CMakeFiles/mri_head.dir/link.d mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o -o mri_head/mri_head utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1431/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/link.d mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o -o mri_gtmpvc/mri_gtmpvc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1432/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/link.d mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o -o mri_hausdorff_dist/mri_hausdorff_dist utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1433/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gtmseg/CMakeFiles/mri_gtmseg.dir/link.d mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o -o mri_gtmseg/mri_gtmseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1434/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_hires_register.dir/link.d mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o -o mri_hires_register/mri_hires_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1435/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/link.d mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o -o mri_hires_register/mri_linear_align_binary utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1436/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_compute_distances.dir/link.d mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o -o mri_hires_register/mri_compute_distances utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1437/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/link.d mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o -o mri_hires_register/mri_nl_align_binary utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1438/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_linear_align.dir/link.d mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o -o mri_hires_register/mri_linear_align utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1439/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_histo_eq/CMakeFiles/mri_histo_eq.dir/link.d mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o -o mri_histo_eq/mri_histo_eq utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1440/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_jacobian/CMakeFiles/mri_jacobian.dir/link.d mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o -o mri_jacobian/mri_jacobian utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1441/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_joint_density/CMakeFiles/mri_joint_density.dir/link.d mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o -o mri_joint_density/mri_joint_density utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1442/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_nl_align.dir/link.d mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o -o mri_hires_register/mri_nl_align utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1443/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label_histo/CMakeFiles/mri_label_histo.dir/link.d mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o -o mri_label_histo/mri_label_histo utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1444/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label_volume/CMakeFiles/mri_label_volume.dir/link.d mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o -o mri_label_volume/mri_label_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1445/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label_vals/CMakeFiles/mri_label_vals.dir/link.d mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o -o mri_label_vals/mri_label_vals utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1446/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/link.d mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o -o mri_map_cpdat/mri_map_cpdat utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1447/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_linear_register/CMakeFiles/mri_linear_register.dir/link.d mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o -o mri_linear_register/mri_linear_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1448/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/link.d mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o -o mri_mark_temporal_lobe/mri_mark_temporal_lobe utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1449/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mcsim/CMakeFiles/mri_mcsim.dir/link.d mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o -o mri_mcsim/mri_mcsim utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:469:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1450/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mcsim/CMakeFiles/mri_maps2csd.dir/link.d mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o -o mri_mcsim/mri_maps2csd utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:147:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1451/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_otl/CMakeFiles/list_otl_labels.dir/link.d mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o -o mri_otl/list_otl_labels utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1452/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mi/CMakeFiles/mri_mi.dir/link.d mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o -o mri_mi/mri_mi utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1453/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_modify/CMakeFiles/mri_modify.dir/link.d mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o -o mri_modify/mri_modify utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1454/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/link.d mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o -o mri_parse_sdcmdir/mri_parse_sdcmdir utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1455/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_modify/CMakeFiles/mri_copy_params.dir/link.d mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o -o mri_modify/mri_copy_params utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1456/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_probe_ima/CMakeFiles/mri_probe_ima.dir/link.d mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o -o mri_probe_ima/mri_probe_ima utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1457/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_morphology/CMakeFiles/mri_morphology.dir/link.d mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o -o mri_morphology/mri_morphology utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1458/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/link.d mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o -o mri_ms_fitparms/mri_ms_fitparms utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1459/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_nlfilter/CMakeFiles/mri_nlfilter.dir/link.d mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o -o mri_nlfilter/mri_nlfilter utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1460/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_paint/CMakeFiles/mri_paint.dir/link.d mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o -o mri_paint/mri_paint utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1461/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_path2label/CMakeFiles/mri_path2label.dir/link.d mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o -o mri_path2label/mri_path2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRISfindPath.isra’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1881:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1841:25: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ [1462/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_polv/CMakeFiles/mri_polv.dir/link.d mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o -o mri_polv/mri_polv utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1463/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_reduce/CMakeFiles/mri_reduce.dir/link.d mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o -o mri_reduce/mri_reduce utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1464/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rf_label/CMakeFiles/mri_rf_label.dir/link.d mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o -o mri_rf_label/mri_rf_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1465/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/link.d mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o -o mri_rf_long_train/mri_rf_long_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1466/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rf_train/CMakeFiles/mri_rf_train.dir/link.d mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o -o mri_rf_train/mri_rf_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1467/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/link.d mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o -o mri_strip_subject_info/mri_strip_subject_info utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1468/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ribbon/CMakeFiles/mri_ribbon.dir/link.d mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o -o mri_ribbon/mri_ribbon utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1469/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rigid_register/CMakeFiles/mri_rigid_register.dir/link.d mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o -o mri_rigid_register/mri_rigid_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1470/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segcentroids/CMakeFiles/mri_segcentroids.dir/link.d mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o -o mri_segcentroids/mri_segcentroids utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1471/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_sbbr/CMakeFiles/mri_sbbr.dir/link.d mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o -o mri_sbbr/mri_sbbr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1472/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seghead/CMakeFiles/mri_seghead.dir/link.d mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o -o mri_seghead/mri_seghead utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1473/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/link.d mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o -o mri_strip_nonwhite/mri_strip_nonwhite utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1474/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surfacemask/CMakeFiles/mri_surfacemask.dir/link.d mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o -o mri_surfacemask/mri_surfacemask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1475/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_synthesize/CMakeFiles/mri_synthesize.dir/link.d mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o -o mri_synthesize/mri_synthesize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1476/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_threshold/CMakeFiles/mri_threshold.dir/link.d mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o -o mri_threshold/mri_threshold utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1477/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/link.d mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o -o mri_topologycorrection/mri_topologycorrection utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:673:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:675:16: note: the first difference of corresponding definitions is field ‘next’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:755:16: warning: type ‘struct SEGMENTATION’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:144:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:757:7: note: the first difference of corresponding definitions is field ‘ncomponents’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:137:12: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1478/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_train/CMakeFiles/mri_train.dir/link.d mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o -o mri_train/mri_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1479/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_twoclass/CMakeFiles/mri_twoclass.dir/link.d mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o -o mri_twoclass/mri_twoclass utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1480/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_transform/CMakeFiles/mri_transform.dir/link.d mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o -o mri_transform/mri_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1481/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_volcluster/CMakeFiles/mri_volcluster.dir/link.d mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o -o mri_volcluster/mri_volcluster utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1482/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_volcluster/CMakeFiles/mri_cluster.dir/link.d mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o -o mri_volcluster/mri_cluster utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1483/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_warp_convert/CMakeFiles/mri_warp_convert.dir/link.d mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o -o mri_warp_convert/mri_warp_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1484/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_volsynth/CMakeFiles/mri_volsynth.dir/link.d mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o -o mri_volsynth/mri_volsynth utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1485/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_wbc/CMakeFiles/mri_wbc.dir/link.d mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o -o mri_wbc/mri_wbc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1486/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_xvolavg/CMakeFiles/mri_xvolavg.dir/link.d mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o -o mri_xvolavg/mri_xvolavg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1487/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_z2p/CMakeFiles/mri_z2p.dir/link.d mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o -o mri_z2p/mri_z2p utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘compute’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:276:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In member function ‘compute’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1488/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris2rgb/CMakeFiles/mris2rgb.dir/link.d mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o mris2rgb/CMakeFiles/mris2rgb.dir/oglutil.cpp.o mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o -o mris2rgb/mris2rgb utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1489/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/link.d mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o -o mris_annot_to_segmentation/mris_annot_to_segmentation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1490/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_apply_reg/CMakeFiles/mris_apply_reg.dir/link.d mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o -o mris_apply_reg/mris_apply_reg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1491/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_average_curvature/CMakeFiles/mris_average_curvature.dir/link.d mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o -o mris_average_curvature/mris_average_curvature utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1492/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_BA_segment/CMakeFiles/mris_BA_segment.dir/link.d mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o -o mris_BA_segment/mris_BA_segment utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1493/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ca_train/CMakeFiles/mris_ca_train.dir/link.d mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o -o mris_ca_train/mris_ca_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1494/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/link.d mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o -o mris_compute_acorr/mris_compute_acorr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1495/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/link.d mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o -o mris_compute_overlap/mris_compute_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1496/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/link.d mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o -o mris_compute_parc_overlap/mris_compute_parc_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1497/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/link.d mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o -o mris_compute_volume_fractions/mris_compute_volume_fractions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1498/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_copy_header/CMakeFiles/mris_copy_header.dir/link.d mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o -o mris_copy_header/mris_copy_header utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1499/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_congeal/CMakeFiles/mris_congeal.dir/link.d mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o -o mris_congeal/mris_congeal utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1500/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_deform/CMakeFiles/mris_deform.dir/link.d mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o -o mris_deform/mris_deform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1501/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_distance_map/CMakeFiles/mris_distance_map.dir/link.d mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o -o mris_distance_map/mris_distance_map utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1502/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_deform/CMakeFiles/mris_nudge.dir/link.d mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o -o mris_deform/mris_nudge utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1503/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_deform/CMakeFiles/mris_ca_deform.dir/link.d mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o -o mris_deform/mris_ca_deform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1504/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/link.d mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o -o mris_distance_to_label/mris_distance_to_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1505/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_distance_transform/CMakeFiles/mris_distance_transform.dir/link.d mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o -o mris_distance_transform/mris_distance_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1506/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_entropy/CMakeFiles/mris_entropy.dir/link.d mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o -o mris_entropy/mris_entropy utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1507/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_errors/CMakeFiles/mris_errors.dir/link.d mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o -o mris_errors/mris_errors utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1508/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_expand/CMakeFiles/mris_expand.dir/link.d mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o -o mris_expand/mris_expand utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1509/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_extract_patches/CMakeFiles/mris_extract_patches.dir/link.d mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o -o mris_extract_patches/mris_extract_patches utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1510/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fill/CMakeFiles/mris_fill.dir/link.d mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o -o mris_fill/mris_fill utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1511/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/link.d mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o -o mris_find_flat_regions/mris_find_flat_regions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘MRISsegmentMarked’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp:98:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15073:24: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘MRISsegmentMarked’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp:98:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15074:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1512/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_flatten/CMakeFiles/mris_flatten.dir/link.d mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o -o mris_flatten/mris_flatten utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1513/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fwhm/CMakeFiles/mris_fwhm.dir/link.d mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o -o mris_fwhm/mris_fwhm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1514/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/link.d mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o -o mris_hausdorff_dist/mris_hausdorff_dist utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1515/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/link.d mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o -o mris_init_global_tractography/mris_init_global_tractography utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1516/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/link.d mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o -o mris_interpolate_warp/mris_interpolate_warp utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1517/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label_area/CMakeFiles/mris_label_area.dir/link.d mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o -o mris_label_area/mris_label_area utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1518/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label_calc/CMakeFiles/mris_label_calc.dir/link.d mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o -o mris_label_calc/mris_label_calc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1519/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label_mode/CMakeFiles/mris_label_mode.dir/link.d mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o -o mris_label_mode/mris_label_mode utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1520/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/link.d mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o -o mris_make_average_surface/mris_make_average_surface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘mrisMarkIntersections’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp:13052:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘mrisMarkIntersections’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1521/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/link.d mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o -o mris_make_face_parcellation/mris_make_face_parcellation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1522/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_map_cuts/CMakeFiles/mris_map_cuts.dir/link.d mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o -o mris_map_cuts/mris_map_cuts utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1523/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_template/CMakeFiles/mris_make_template.dir/link.d mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o -o mris_make_template/mris_make_template utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1524/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/link.d mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o -o mris_parcellate_connectivity/mris_parcellate_connectivity utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1525/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_morph_stats/CMakeFiles/mris_morph_stats.dir/link.d mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o -o mris_morph_stats/mris_morph_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1526/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/link.d mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o -o mris_merge_parcellations/mris_merge_parcellations utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1527/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ms_refine/CMakeFiles/mris_ms_refine.dir/link.d mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o -o mris_ms_refine/mris_ms_refine utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp:3237:1: warning: type ‘struct FLASH_LOOKUP_TABLE’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/flash.cpp:43:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp:3235:10: note: the first difference of corresponding definitions is field ‘size’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/flash.cpp:41:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1528/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--as-needed -Wl,--dependency-file=mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/link.d mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o -o mris_mesh_subdivide/mris_mesh_subdivide utils/libutils.a /usr/lib64/libvtkWrappingTools.so.1 /usr/lib64/libvtkViewsQt.so.1 /usr/lib64/libvtkViewsInfovis.so.1 /usr/lib64/libvtkViewsContext2D.so.1 /usr/lib64/libvtkViewsCore.so.1 /usr/lib64/libvtkTestingRendering.so.1 /usr/lib64/libvtkTestingCore.so.1 /usr/lib64/libvtkRenderingVolumeAMR.so.1 /usr/lib64/libvtkRenderingQt.so.1 /usr/lib64/libvtkPythonContext2D.so.1 /usr/lib64/libvtkRenderingParallel.so.1 /usr/lib64/libvtkRenderingVRModels.so.1 /usr/lib64/libvtkRenderingMatplotlib.so.1 /usr/lib64/libvtkRenderingLabel.so.1 /usr/lib64/libvtkRenderingLOD.so.1 /usr/lib64/libvtkRenderingLICOpenGL2.so.1 /usr/lib64/libvtkRenderingImage.so.1 /usr/lib64/libvtkRenderingGridAxes.so.1 /usr/lib64/libvtkRenderingExternal.so.1 /usr/lib64/libvtkRenderingContextOpenGL2.so.1 /usr/lib64/libvtkRenderingCellGrid.so.1 /usr/lib64/libvtkRenderingVolumeOpenGL2.so.1 /usr/lib64/libvtkIOXdmf2.so.1 /usr/lib64/libvtkxdmf2.so.1 /usr/lib64/libvtkIOVeraOut.so.1 /usr/lib64/libvtkIOVPIC.so.1 /usr/lib64/libvtkvpic.so.1 /usr/lib64/libvtkIOTecplotTable.so.1 /usr/lib64/libvtkIOTRUCHAS.so.1 /usr/lib64/libvtkIOSegY.so.1 /usr/lib64/libvtkIOParallelXML.so.1 /usr/lib64/libvtkIOParallelLSDyna.so.1 /usr/lib64/libvtkIOParallelExodus.so.1 /usr/lib64/libvtkIOPLY.so.1 /usr/lib64/libvtkIOPIO.so.1 /usr/lib64/libvtkIOOggTheora.so.1 /usr/lib64/libvtkIOOMF.so.1 /usr/lib64/libvtkIONetCDF.so.1 /usr/lib64/libvtkIOMotionFX.so.1 /usr/lib64/libvtkIOParallel.so.1 /usr/lib64/libvtkIOMINC.so.1 /usr/lib64/libvtkIOLSDyna.so.1 /usr/lib64/libvtkIOLANLX3D.so.1 /usr/lib64/libvtkIOImport.so.1 /usr/lib64/libvtkIOIOSS.so.1 /usr/lib64/libvtkioss.so.1 /usr/lib64/libvtkIOHDF.so.1 /usr/lib64/libvtkIOH5part.so.1 /usr/lib64/libvtkh5part.so.1 /usr/lib64/libvtkIOH5Rage.so.1 /usr/lib64/libvtkIOFLUENTCFF.so.1 /usr/lib64/libvtkIOVideo.so.1 /usr/lib64/libvtkIOMovie.so.1 /usr/lib64/libvtkIOFDS.so.1 /usr/lib64/libvtkIOInfovis.so.1 /usr/lib64/libvtkIOExportPDF.so.1 /usr/lib64/libvtkIOExportGL2PS.so.1 /usr/lib64/libvtkRenderingGL2PSOpenGL2.so.1 /usr/lib64/libvtkgl2ps.so.1 /usr/lib64/libvtkIOExodus.so.1 /usr/lib64/libvtkIOEngys.so.1 /usr/lib64/libvtkIOEnSight.so.1 /usr/lib64/libvtkIOERF.so.1 /usr/lib64/libvtkIOCityGML.so.1 /usr/lib64/libvtkIOChemistry.so.1 /usr/lib64/libvtkIOCesium3DTiles.so.1 /usr/lib64/libvtkIOCONVERGECFD.so.1 /usr/lib64/libvtkIOCGNSReader.so.1 /usr/lib64/libvtkIOAvmesh.so.1 /usr/lib64/libvtkIOAsynchronous.so.1 /usr/lib64/libvtkIOExport.so.1 /usr/lib64/libvtkRenderingVtkJS.so.1 /usr/lib64/libvtkIOGeometry.so.1 /usr/lib64/libvtkRenderingSceneGraph.so.1 /usr/lib64/libvtkIOAMR.so.1 /usr/lib64/libvtkInteractionImage.so.1 /usr/lib64/libvtkInfovisLayout.so.1 /usr/lib64/libvtkImagingStencil.so.1 /usr/lib64/libvtkImagingStatistics.so.1 /usr/lib64/libvtkImagingOpenGL2.so.1 /usr/lib64/libvtkImagingMorphological.so.1 /usr/lib64/libvtkImagingMath.so.1 /usr/lib64/libvtkImagingFourier.so.1 /usr/lib64/libvtkGUISupportQtSQL.so.1 /usr/lib64/libvtkIOSQL.so.1 /usr/lib64/libvtkGUISupportQtQuick.so.1 /usr/lib64/libvtkGUISupportQt.so.1 /usr/lib64/libvtkInteractionWidgets.so.1 /usr/lib64/libvtkRenderingVolume.so.1 /usr/lib64/libvtkRenderingAnnotation.so.1 /usr/lib64/libvtkInteractionStyle.so.1 /usr/lib64/libvtkImagingHybrid.so.1 /usr/lib64/libvtkImagingColor.so.1 /usr/lib64/libvtkGeovisCore.so.1 /usr/lib64/libvtkFiltersTopology.so.1 /usr/lib64/libvtkFiltersTensor.so.1 /usr/lib64/libvtkFiltersSelection.so.1 /usr/lib64/libvtkFiltersSMP.so.1 /usr/lib64/libvtkFiltersPython.so.1 /usr/lib64/libvtkFiltersProgrammable.so.1 /usr/lib64/libvtkFiltersPoints.so.1 /usr/lib64/libvtkFiltersParallelVerdict.so.1 /usr/lib64/libvtkFiltersParallelStatistics.so.1 /usr/lib64/libvtkFiltersParallelImaging.so.1 /usr/lib64/libvtkFiltersParallelDIY2.so.1 /usr/lib64/libvtkFiltersTemporal.so.1 /usr/lib64/libvtkFiltersImaging.so.1 /usr/lib64/libvtkImagingGeneral.so.1 /usr/lib64/libvtkFiltersGeometryPreview.so.1 /usr/lib64/libvtkFiltersGeneric.so.1 /usr/lib64/libvtkFiltersFlowPaths.so.1 /usr/lib64/libvtkFiltersAMR.so.1 /usr/lib64/libvtkFiltersParallel.so.1 /usr/lib64/libvtkFiltersTexture.so.1 /usr/lib64/libvtkFiltersModeling.so.1 /usr/lib64/libvtkDomainsChemistryOpenGL2.so.1 /usr/lib64/libvtkRenderingOpenGL2.so.1 /usr/lib64/libvtkRenderingHyperTreeGrid.so.1 /usr/lib64/libvtkRenderingUI.so.1 /usr/lib64/libvtkFiltersHybrid.so.1 /usr/lib64/libvtkDomainsChemistry.so.1 /usr/lib64/libvtkCommonPython.so.1 /usr/lib64/libvtkChartsCore.so.1 /usr/lib64/libvtkInfovisCore.so.1 /usr/lib64/libvtkFiltersExtraction.so.1 /usr/lib64/libvtkParallelDIY.so.1 /usr/lib64/libvtkIOXML.so.1 /usr/lib64/libvtkIOXMLParser.so.1 /usr/lib64/libvtkParallelCore.so.1 /usr/lib64/libvtkIOLegacy.so.1 /usr/lib64/libvtkIOCellGrid.so.1 /usr/lib64/libvtkFiltersCellGrid.so.1 /usr/lib64/libvtkIOCore.so.1 /usr/lib64/libvtkFiltersStatistics.so.1 /usr/lib64/libvtkFiltersHyperTree.so.1 /usr/lib64/libvtkImagingSources.so.1 /usr/lib64/libvtkIOImage.so.1 /usr/lib64/libvtkDICOMParser.so.1 /usr/lib64/libvtkmetaio.so.1 /usr/lib64/libvtkRenderingContext2D.so.1 /usr/lib64/libvtkRenderingFreeType.so.1 /usr/lib64/libvtkRenderingCore.so.1 /usr/lib64/libvtkFiltersSources.so.1 /usr/lib64/libvtkImagingCore.so.1 /usr/lib64/libvtkFiltersGeneral.so.1 /usr/lib64/libvtkFiltersVerdict.so.1 /usr/lib64/libvtkverdict.so.1 /usr/lib64/libvtkFiltersGeometry.so.1 /usr/lib64/libvtkCommonComputationalGeometry.so.1 /usr/lib64/libvtkFiltersCore.so.1 /usr/lib64/libvtkFiltersReduction.so.1 /usr/lib64/libvtkCommonExecutionModel.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libvtkPythonInterpreter.so.1 /usr/lib64/libxml2.so /usr/lib64/libtheora.so /usr/lib64/libtheoraenc.so /usr/lib64/libogg.so /usr/lib64/libtheoradec.so /usr/lib64/libvtkexodusII.so.1 /usr/lib64/libnetcdf.so /usr/lib64/libhpdf.so /usr/lib64/libpng.so /usr/lib64/libz.so /usr/lib64/libjsoncpp.so /usr/lib64/libpugixml.so.1.15 /usr/lib64/libvtkcgns.so.1 /usr/lib64/libhdf5.so /usr/lib64/libhdf5_hl.so /usr/lib64/libQt6Sql.so.6.10.3 /usr/lib64/libsqlite3.so /usr/lib64/libQt6OpenGLWidgets.so.6.10.3 /usr/lib64/libQt6Widgets.so.6.10.3 /usr/lib64/libQt6Quick.so.6.10.3 /usr/lib64/libQt6OpenGL.so.6.10.3 /usr/lib64/libQt6Gui.so.6.10.3 /usr/lib64/libGL.so /usr/lib64/libQt6Qml.so.6.10.3 /usr/lib64/libQt6Network.so.6.10.3 /usr/lib64/libQt6Core.so.6.10.3 /usr/lib64/libproj.so /usr/lib64/libfmt.so.11.2.0 /usr/lib64/libvtkglad.so.1 /usr/lib64/libfreetype.so /usr/lib64/libX11.so /usr/lib64/libvtkCommonColor.so.1 /usr/lib64/libvtkCommonDataModel.so.1 /usr/lib64/libvtkCommonSystem.so.1 /usr/lib64/libvtkCommonMisc.so.1 /usr/lib64/libvtkCommonTransforms.so.1 /usr/lib64/libvtkCommonMath.so.1 /usr/lib64/libvtkkissfft.so.1 /usr/lib64/libvtkWrappingPythonCore3.14.so.1 /usr/lib64/libpython3.14.so /usr/lib64/libvtkCommonCore.so.1 /usr/lib64/libvtksys.so.1 -ldl /usr/lib64/libvtkloguru.so.1 /usr/lib64/libvtktoken.so.1 /usr/lib64/libexpat.so /usr/lib64/liblz4.so /usr/lib64/liblzma.so /usr/lib64/libjpeg.so /usr/lib64/libtiff.so /usr/lib64/libdouble-conversion.so && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1529/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/link.d mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o -o mris_multiscale_stats/mris_multiscale_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1530/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/link.d mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o -o mris_niters2fwhm/mris_niters2fwhm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1531/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register_label_map/CMakeFiles/mris_register_label_map.dir/link.d mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o -o mris_register_label_map/mris_register_label_map utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1532/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_pmake/CMakeFiles/mris_pmake.dir/link.d mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o -o mris_pmake/mris_pmake utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1533/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/link.d mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o -o mris_register_to_volume/mris_register_to_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1534/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/link.d mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o -o mris_register_to_volume/mris_register_to_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1535/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_remove_variance/CMakeFiles/mris_remove_variance.dir/link.d mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o -o mris_remove_variance/mris_remove_variance utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1536/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rescale/CMakeFiles/mris_rescale.dir/link.d mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o -o mris_rescale/mris_rescale utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1537/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_remesh/CMakeFiles/mris_remesh.dir/link.d mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o -o mris_remesh/mris_remesh utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1538/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/link.d mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o -o mris_reposition_surface/mris_reposition_surface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1539/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_reverse/CMakeFiles/mris_reverse.dir/link.d mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o -o mris_reverse/mris_reverse utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1540/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rf_label/CMakeFiles/mris_rf_label.dir/link.d mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o -o mris_rf_label/mris_rf_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1541/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rf_train/CMakeFiles/mris_rf_train.dir/link.d mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o -o mris_rf_train/mris_rf_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1542/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rotate/CMakeFiles/mris_rotate.dir/link.d mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o -o mris_rotate/mris_rotate utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1543/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sample_label/CMakeFiles/mris_sample_label.dir/link.d mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o -o mris_sample_label/mris_sample_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1544/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sample_parc/CMakeFiles/mris_sample_parc.dir/link.d mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o -o mris_sample_parc/mris_sample_parc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp: In function ‘MRISsegmentAnnotated.isra’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15197:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1545/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_seg2annot/CMakeFiles/mris_seg2annot.dir/link.d mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o -o mris_seg2annot/mris_seg2annot utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1546/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_segment/CMakeFiles/mris_segment.dir/link.d mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o -o mris_segment/mris_segment utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1547/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/link.d mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o -o mris_segmentation_stats/mris_segmentation_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1548/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_segment_vals/CMakeFiles/mris_segment_vals.dir/link.d mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o -o mris_segment_vals/mris_segment_vals utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1549/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/link.d mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o -o mris_shrinkwrap/mris_shrinkwrap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1550/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/link.d mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o -o mris_shrinkwrap/mris_AA_shrinkwrap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1551/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/link.d mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o -o mris_simulate_atrophy/mris_simulate_atrophy utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1552/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/link.d mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o -o mris_smooth_intracortical/mris_smooth_intracortical utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1553/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_spherical_average/CMakeFiles/mris_spherical_average.dir/link.d mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o -o mris_spherical_average/mris_spherical_average utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1554/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_spintest/CMakeFiles/mris_spintest.dir/link.d mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o -o mris_spintest/mris_spintest utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1555/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_talairach/CMakeFiles/mris_talairach.dir/link.d mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o -o mris_talairach/mris_talairach utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1556/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/link.d mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o -o mris_surface_to_vol_distances/mris_surface_to_vol_distances utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1557/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/link.d mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o -o mris_thickness_comparison/mris_thickness_comparison utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1558/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_transform/CMakeFiles/mris_transform.dir/link.d mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o -o mris_transform/mris_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1559/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/link.d mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o -o mris_translate_annotation/mris_translate_annotation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1560/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=nmovie_qt/CMakeFiles/nmovie_qt.dir/link.d nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o nmovie_qt/CMakeFiles/nmovie_qt.dir/MainWindow.cpp.o nmovie_qt/CMakeFiles/nmovie_qt.dir/RenderWidget.cpp.o -o nmovie_qt/nmovie_qt /usr/lib64/libQt6Widgets.so.6.10.3 /usr/lib64/libQt6Gui.so.6.10.3 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.10.3 && : [1561/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/link.d mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o -o mris_transmantle_dysplasia_paths/mris_transmantle_dysplasia_paths utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1562/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volume/CMakeFiles/mris_volume.dir/link.d mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o -o mris_volume/mris_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1563/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=spline3/CMakeFiles/Spline3_test.dir/link.d spline3/CMakeFiles/Spline3_test.dir/Spline3_test.cpp.o -o spline3/Spline3_test && : [1564/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volume/CMakeFiles/mris_wm_volume.dir/link.d mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o -o mris_volume/mris_wm_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1565/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=stim_polar/CMakeFiles/stim_polar.dir/link.d stim_polar/CMakeFiles/stim_polar.dir/stim_polar.cpp.o -o stim_polar/stim_polar utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : [1566/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=optseq2/CMakeFiles/optseq2.dir/link.d optseq2/CMakeFiles/optseq2.dir/optseq2.cpp.o -o optseq2/optseq2 utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1567/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=qdec_glmfit/CMakeFiles/qdec_glmfit.dir/link.d qdec_glmfit/CMakeFiles/qdec_glmfit.dir/qdec_glmfit.cxx.o -o qdec_glmfit/qdec_glmfit qdecproject/libqdecproject.a utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1568/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=template/CMakeFiles/template.dir/link.d template/CMakeFiles/template.dir/template.cpp.o -o template/template utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : [1569/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_warp/CMakeFiles/mris_warp.dir/link.d mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o -o mris_warp/mris_warp utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1570/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_watershed/CMakeFiles/mris_watershed.dir/link.d mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o -o mris_watershed/mris_watershed utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1571/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=unittests/CMakeFiles/testchklc.dir/link.d unittests/CMakeFiles/testchklc.dir/testchklc.cpp.o -o unittests/testchklc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : [1572/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=tridec/CMakeFiles/tridec.dir/link.d tridec/CMakeFiles/tridec.dir/tridec.cpp.o -o tridec/tridec utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1573/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/link.d oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o -o oct_register_mosaic/oct_register_mosaic utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1574/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mrisp_write/CMakeFiles/mrisp_write.dir/link.d mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o -o mrisp_write/mrisp_write utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1575/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=stat_normalize/CMakeFiles/stat_normalize.dir/link.d stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o -o stat_normalize/stat_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:137:14: warning: ‘stats_talxfm’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:132:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:132:13: note: ‘stats_talxfm’ was previously declared here [1576/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=swi_processing/CMakeFiles/swi_preprocess.dir/link.d swi_processing/CMakeFiles/swi_preprocess.dir/swi_preprocess.cpp.o swi_processing/CMakeFiles/swi_preprocess.dir/cmd_line_interface.cpp.o -o swi_processing/swi_preprocess utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1577/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=swi_processing/CMakeFiles/swi_process.dir/link.d swi_processing/CMakeFiles/swi_process.dir/swi_process.cpp.o swi_processing/CMakeFiles/swi_process.dir/cmd_line_interface.cpp.o -o swi_processing/swi_process utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1578/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=test_makevol/CMakeFiles/makevol.dir/link.d test_makevol/CMakeFiles/makevol.dir/main.cpp.o -o test_makevol/makevol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1579/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=ventfix/CMakeFiles/ventfix.dir/link.d ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o -o ventfix/ventfix utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1580/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=pointset2label/CMakeFiles/pointset2label.dir/link.d pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o -o pointset2label/pointset2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/aarch64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.A8hM45 + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + '[' /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/freesurfer-8.2.0-build + mkdir /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + rm -f redhat-linux-build/distribution/average/cmake_install.cmake + touch redhat-linux-build/distribution/average/cmake_install.cmake + echo '' ++ echo redhat-linux-build + python3 -c $'\nimport os, re\nfor root, dirs, files in os.walk(\'redhat-linux-build\'):\n for fn in files:\n if fn == \'cmake_install.cmake\':\n path = os.path.join(root, fn)\n txt = open(path).read()\n if re.search(r\'fspython|pip install|python3\\.8|Could not install|Could not extract|install_directories|install_symlinks_fspython\', txt):\n open(path, \'w\').write(\'# Cleared for RPM build\\n\')\n' + find redhat-linux-build -name cmake_install.cmake -exec sed -i '/file(MAKE_DIRECTORY\|configure_file\|execute_process\|message(STATUS/s|/usr/lib/freesurfer|$ENV{DESTDIR}/usr/lib/freesurfer|g' '{}' + + DESTDIR=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./ASegStatsLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./DefectLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./FreeSurferColorLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SegmentNoLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./Simple_surface_labels2005.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./Simple_surface_labels2009.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SubCorticalMassLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./tkmeditParcColorsCMA -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./WMParcStatsLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/FreeSurferColorLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels24.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels35.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels5.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels4.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/compressed_lut.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/nonlat.txt -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./FreeSurferEnv.csh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./FreeSurferEnv.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SetUpFreeSurfer.csh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SetUpFreeSurfer.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./sources.csh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./sources.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic0.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic1.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic2.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic3.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic4.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic5.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic6.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic7.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/inner_skull.dat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/outer_skin.dat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/outer_skull.dat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/sessions/README -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license-trimesh-python.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.anaconda-miniconda-python.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.ants.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.apache.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.argparse.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.blt.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.boost.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.certifi-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.charls.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.cortechs.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.dcm2niix.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.dcmtk.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.expat.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.fib.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.fireants -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.freesurfer_SLA.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.freetype2-python-3rd-party.txt -- Installing: 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Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/compute_label_vals.csh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/compute_label_volumes.csh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/conf2hires -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/cor_to_minc -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/cp-dicom -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/create_nnUNet_v1.7_env.sh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/csvprint -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dcmdir-info-mgh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dcmsplit -- Configuring: 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Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/reinflate_subject-lh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/reinflate_subject-rh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/remove_talairach -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/renormalize_subject -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/renormalize_subject_keep_editting -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/renormalize_T1_subject -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/reregister_subject_mixed -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/rtview -- Configuring: 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Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/skip_long_make_checks -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/slicedelay -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sphere_subject -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sphere_subject-lh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sphere_subject-rh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/spm_t_to_b -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/spmmat2register -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/spmregister -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sratio -- Configuring: 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Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/polar-views.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/readenv.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/real-flat.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/real-views.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/saveflat.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/saveviews.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/setdefpatchview.tcl -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/tcl/solmovie-flat.tcl -- Installing: 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Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/mri_easyreg -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_easyreg -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/mri_easywarp -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_easywarp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/mri_easyatlas -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_easyatlas -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/easyreg_v10_230103.h5 -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_evaluate_morph -- Installing: 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/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/sharedGMMparameters.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/sharedWMMparameters_DSWbeta.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/sharedWMMparameters_LogFrob.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/sharedWMMparameters_Wishart.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/SYNTHSEGsharedGMMparameters.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/tractAtlasCorrectedCompressionLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/ThalamicNuclei/atlas_DTI/tractAtlasCorrected.txt.gz -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/tridec -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/testchklc -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/ventfix -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/pointset2label -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/mri_synth_surf.py -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/norm_synthSR.py -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/refine_synthSR.py -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/synthsurf_v10_230420.h5 -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/recon-all-clinical.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/mri_segment_thalamic_nuclei_dti_cnn -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_segment_thalamic_nuclei_dti_cnn -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/thalseg_1.0.h5 -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/thalseg_1.1.h5 -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/thalseg_segmentation_labels_1.0.npy -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/thalseg_segmentation_names_1.0.npy -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/models/thalseg_topological_classes_1.0.npy + find /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer -type f -exec sed -i '1s|^#!/usr/bin/env python$|#!/usr/bin/python3|' '{}' + + install -Dpm 0644 /builddir/build/SOURCES/freesurfer-profile.sh /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/etc/profile.d/freesurfer.sh + install -Dpm 0644 /builddir/build/SOURCES/freesurfer-profile.csh /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/etc/profile.d/freesurfer.csh + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib/freesurfer/SetUpFreeSurfer.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/SetUpFreeSurfer.sh from /bin/bash -p to #!/usr/bin/bash -p mangling shebang in /usr/lib/freesurfer/sources.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/sources.sh from /bin/bash -p to #!/usr/bin/bash -p mangling shebang in /usr/lib/freesurfer/fsfast/bin/acfseg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/acorfunc-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/addmcparams from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/aseg2funcmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/autoreg-fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/autoreg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/avgraw from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/bfileconvert from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/bfvcheck from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/bgmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cat-bvolume from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/checkmincdir from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/check-sliceres-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/clusterspec2mask from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cluster-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cmpanalyses-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cmpsesssnr-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cmpsnr-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/compress-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/concat-bvolumes from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/conmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cordiff from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/countncond from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/cp-bvolume from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/df-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/diag-fmri from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/diag-optseq from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/difffsfast from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/du-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/evfunc from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/evfunc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/evpve-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/evspatfil from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/evspatfil-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fast_getext from /bin/csh -f to #!/usr/bin/csh -f *** WARNING: ./usr/lib/freesurfer/fsfast/bin/fast-log-preamble.csh is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/fsfast/bin/fcseed-config from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fcseedcor from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fcseed-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fcreg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/feat.fsfast-patch from /bin/sh to #!/usr/bin/sh *** WARNING: ./usr/lib/freesurfer/fsfast/bin/feat.fsfast-patch.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/fsfast/bin/fieldsign-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fixseqinfo-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/flacproc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsfast-version from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsfast-gui-bug from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsfeat from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsfeatffx from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsfeat-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsf-glmfit from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsf-kmnacf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsf-kmracf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fslregister-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fsl2par from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/func2acf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/func2label from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/funcroi-config from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/funcroi-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/funcroi-table-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/functcvm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/functcvm-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/functwf-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fwhmest from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/fwhmest-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getana from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getbext from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getbfvdim from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getendian from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getfirstrundir-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getfirstsliceno from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getformat_from_stem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/geticoorder from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getlastsliceno from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getmatlab from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getncols from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getnconds from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getnframes from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getnrows from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getnslices from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getpwdcmd from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getrunlist from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getsesspath from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getsliceno from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getslicestr from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getspacetype from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/getstem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/gettalres from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/ghostdet from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/ghostdet-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/glmest from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/glmfourier from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/glmfourier-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/glmstats from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/groupreg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/ipfsl from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isargflag from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isroiavg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-fe from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-fe-abb-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-fe-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-fe-sess-1.3 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-re from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-re-abb-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxavg-re-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxconcat0-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/isxconcat-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/kmacfcond-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/kmacf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/kmacfwht-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/lrst-blk from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/lrst-blk-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mc-afni from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mc-afni2 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mcdat2mcextreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mcparams2extreg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/meanimg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkanalysis-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkblockpar from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkbrainmask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkbrainmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkcmanova-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkcontrast from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkcontrast2 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkcontrast-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkdesignmtx from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkdesmtx-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkfeat-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkfieldsign from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkmosaic from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkprestimcon from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mktalreg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mktalxfm-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mktemplate-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/mkvoxshiftmap from /bin/csh -fx to #!/usr/bin/csh -fx mangling shebang in /usr/lib/freesurfer/fsfast/bin/mris_glm-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/optseq from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/optseq.matlab from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/par2fsl3 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/par2kspar from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/par2stf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/parse-measasc from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/plot-pve from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/plot-twf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/preproc-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/prmerge-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/qmedit from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/qsurfer from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/rawavg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/rawfunc2surf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/rawfunc2tal from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/rawfunc2tal-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/reg2subj from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/register-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/rocview from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/roiavg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/roiavgraw from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/roitxt2tbl from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/roixrunsum-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/selxavg2 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/selxavg3-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/selxavg-jk-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/selxavg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/selxavg-sess-perrun from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/seqefficiency from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/sliceview-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/spatialsmooth-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/spikedet from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/spikedet-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/splitstr from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/spmimg2bvolume from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/spmregister-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/stc.fsl from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/stc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/stem2fmt from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/stripsessargs from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/subject-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/surf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/surfsmooth-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/sxacfg-get from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/synthrawroi from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/synth-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/synthstudy from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/tar-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/tkmedit-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/tkregister-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/tksurfer-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/fsfast/bin/vlrmerge from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer/python/packages/nnUNet_v2/process_directory_no_upsample.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/python/scripts/claustrum-seg.py is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/samseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/samseg-long from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/computeTissueConcentrations from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/gems_compute_atlas_probs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/merge_add_mesh_alphas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/prepareAtlasDirectory from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_samseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_samseg_long from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/sbtiv from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/segment_subregions from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/annot2std from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/annot2volseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aparc2feat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aparc_stats_aseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aparcstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/apas2aseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aseg2feat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/asegstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/avi2talxfm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/bblabel from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/bbmask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/bedpostx_mgh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/beta2sxa from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/biasfield from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/bmedits2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/browse-minc-header.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/bugr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/build_desikan_killiany_gcs.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/cblumwmgyri from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/check_recons.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/check_subject from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/lib/freesurfer/bin/checkMCR.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/clear_fs_env.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/compute_interrater_variability.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/compute_label_vals.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/compute_label_volumes.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/conf2hires from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/cor_to_minc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/cp-dicom from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/create_nnUNet_v1.7_env.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/csvprint from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib/freesurfer/bin/dcmdir-info-mgh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dcmsplit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dcmunpack from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/deface_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/defect2seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/defect-seg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/dicom-rename from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/dmri_bset from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.long.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.long.multiscan.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.multiscan.example is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/dt_recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/epidewarp.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/extract_seg_waveform from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/exvivo-hemi-proc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/feat2segstats from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/feat2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/findsession from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fix_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/fix_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/fix_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/fix_subject_corrected from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fix_subject_corrected-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fix_subject_corrected-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fixup_mni_paths from /bin/tcsh to #!/usr/bin/tcsh *** WARNING: ./usr/lib/freesurfer/bin/flirt.newdefault.20080811.sch is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/fname2ext from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/fname2stem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/freesurfer from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fsfirst.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs-check-version from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs-check-os from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs-eddy from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs_install_mcr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_install_cuda from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_lib_check from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_run_from_mcr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_time from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs-topup from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs_tutorial_data from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_update from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fscalc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fscalc.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsdcmdecompress from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsfget from /usr/bin/env tclsh to #!/usr/bin/tclsh *** WARNING: ./usr/lib/freesurfer/bin/fsl.5.0.2.xyztrans.sch is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/fsl_rigid_register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsl_sub_mgh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fslregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-coreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-checkxopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-getxopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-mergexopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-longpreproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-import from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsvglrun from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fsxvfb from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fvcompare from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gca-apply from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcainit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcaprepone from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcatrain from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcatrainskull from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/get_label_thickness from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/getfullpath from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/grad_unwarp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/groupstats from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/groupstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gtmseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gtmstats2table from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/help_xml_validate from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject3 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_new from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_new-lh from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_new-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_sc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/irepifitvol from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/is-surface from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/isanalyze from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/IsLTA from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isnifti from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isolate_labels.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isolate_labels_keeporigval.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/jkgcatrain from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/josareg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/label-cortex from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/label_child from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_elderly_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_subject_flash from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/labels_disjoint from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/labels_intersect from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/labels_union from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/listsubj from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_create_base_sigma from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/long_create_orig from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/longmc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/lpcregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make-segvol-table from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_subcort from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_surface from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_volume from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_cortex_label from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_folding_atlas from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_hemi_mask from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/make_exvivo_filled from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/make_symmetric from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/make_upright from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/map_all_labels from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/map_all_labels-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/map_central_sulcus from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/map_to_base from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/meanval from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mergeseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mideface from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/minc2seqinfo from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mkheadsurf from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer/bin/mkima_index.tcl is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/mkmnc_index.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/mksubjdirs from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mksurfatlas from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/mmppsp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mni152reg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_only_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_only_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_only_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_rgb-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_rgb-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/morph_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/morph_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/morph_tables-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_tables-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri-func2sph from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri-funcvits from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri-sph2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_add_new_tp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_align_long.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_create_t2combined from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_entowm_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_glmfit-sim from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_mcadura_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_mergelabels from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_motion_correct from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_motion_correct.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_motion_correct2 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_nu_correct.mni from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_reorient_LR.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_vsinus_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mris_preproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mris_volsmooth from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/ms_refine_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/orientLAS from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/parc_atlas_jackknife_test from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/pctsurfcon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/plot_structure_stats.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/polyorder from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/post-recon-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/print_unique_labels.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/progressbar.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/qdec from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/rbbr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rcbf-prep from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rebuild_gca_atlas.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-base-init from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-fix-ento from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-long-tp-init from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-rcac-prep from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-surfreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-talairach from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/recon-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/recon-all-exvivo from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/reconbatchjobs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/reg-feat2anat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reg-mni305.2mm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/reg2subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/register.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/register_child from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_elderly_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_subject_flash from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/reinflate_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reinflate_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reinflate_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/remove_talairach from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/renormalize_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/renormalize_subject_keep_editting from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/renormalize_T1_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reregister_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/rtview from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/run-qdec-glm from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/run_mris_preproc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/samseg2recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/scgm-mask from /usr/bin/env tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/seg2cc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/seg2recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/seg2filled from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segment_monkey from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segment_subject_notal from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_notal2 from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_old_skull_strip from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_sc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_talmgh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segpons from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/setlabelstat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/sfa2fieldsign from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/show_tal from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/skip_long_make_checks from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/sphere_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/sphere_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/sphere_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/spm_t_to_b from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/spmmat2register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/spmregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/sratio from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/stem2fname from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/surfreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tal_compare from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/talairach from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talairach2 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talairach_mgh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/talsegprob from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/test_recon-all.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/test_tutorials.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/thickdiffmap from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/tkmeditfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tkregisterfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tksurferfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/topofit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/trac-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/trac-paths from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/trac-preproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/train-gcs-atlas from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/unpack_ima.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpack_ima1.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpack_mnc.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpackimadir from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/unpackimadir2 from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpackmincdir from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/unpacksdcmdir from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/UpdateNeeded from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/usbtree from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/lib/freesurfer/bin/vertexvol from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vlrmerge-mni from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vno_match_check from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vol2segavg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vol2subfield from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vol2symsurf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vsm-smooth from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wfilemask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wm-anat-snr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wmedits2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wmsaseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xcerebralseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xcorr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xfmrot from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xhemi-tal from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xhemireg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/xsanatreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/long_submit_jobs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_qdec_table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_submit_postproc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_stats_tps from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_stats_slopes from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_mris_slopes from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_stats_combine from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/aparcstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/asegstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/tractstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/stattablediff from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/table2map from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/merge_stats_tables from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fspalm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/rca-config from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/rca-config2csh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/slicedelay from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fsrealpath from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/dsurffe from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/bbregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talairach_avi from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mpr2mni305 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/brec from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer/bin/t4img_4dfp from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer/bin/tal_QC_AZS from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer/bin/run_segmentNuclei.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/SegmentAAN.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/check_siemens_dir from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/connectgraph from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/dmri_tensoreig from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/histo_fix_topology from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/histo_segment from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/label_area from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/label_border from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_apply_inu_correction from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_aseg_edit_reclassify from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_aseg_edit_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_auto_fill from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_bc_sc_bias_correct from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_build_priors from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_cht2p from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_classify from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_compute_structure_transforms from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_convert_mdh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_divide_segmentation from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_elastic_energy from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_estimate_tissue_parms from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_extract_conditions from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_fcili from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_gcab_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_gdfglm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_histo_normalize from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_ibmc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_interpolate from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_label_accuracy from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_make_bem_surfaces from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_make_density_map from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_make_labels from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_make_register from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_make_template from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_mosaic from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_ms_EM from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_ms_EM_with_atlas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_ms_LDA from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_multiscale_segment from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_multispectral_segment from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_parselabel from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_partial_ribbon from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_register from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_rf_long_label from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_add_template from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_aseg_distance from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_average_parcellation from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_classify_thickness from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_compute_optimal_kernel from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_density from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_segment_tumor from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_segment_wm_damage from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_fbirn_annot from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_glm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_simulate_atrophy from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_longitudinal_surfaces from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_make_map_surfaces from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_ms_surface_CNR from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_surface_change from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_svm_classify from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_svm_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_twoclass from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_w_to_curv from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_apply_autoencoder from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_train_autoencoder from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_transform_to_COR from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_update_gca from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_vol2roi from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_wmfilter from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_xcorr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/oct_rf_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/oct_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/rbftest from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/regdat2xfm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/repair_siemens_file from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/spherical_st from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_SegmentSubject.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/segmentBS.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dissection_photo_gui.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/process_directory_no_upsample.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_exvivo_strip from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_exvivo_norm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_SegmentSubfieldsT1Longitudinal.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/run_segmentSubjectT1T2_autoEstimateAlveusML.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/run_segmentSubjectT2_autoEstimateAlveusML.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/segmentHA_T1_long.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segmentHA_T1.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segmentHA_T2.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_claustrum_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_cvs_register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_cvs_check from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_cvs_data_copy from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_easyreg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_easywarp from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_easyatlas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_histo_atlas_segment_fireants from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_super_synth from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_pglands_seg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_sclimbic_seg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_segment_hypothalamic_subunits from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_tumorsynth from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_WMHsynthseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mris_compute_lgi from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mris_estimate_wm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_recon-any from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/ConcatenateSubregionsResults.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_synthstrip from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_synthseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_synthsr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_synthsr_hyperfine from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_SegmentThalamicNuclei.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/segmentThalamicNuclei.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/run_SegmentThalamicNuclei_DTI.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer/bin/segmentThalamicNuclei_DTI.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/recon-all-clinical.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_segment_thalamic_nuclei_dti_cnn from /usr/bin/env bash to #!/usr/bin/bash *** WARNING: ./usr/lib/freesurfer/lib/tcl/allisons_surfaces.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/lib/tcl/curv-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/curv-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/dara_data.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/dipmovie-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/eccen-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/eccen-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/fs-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/fs-make.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/fs-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/mk-fieldsign.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/offsetmovie.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/phasemovie.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/polar-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/polar-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/readenv.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/real-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/real-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/saveflat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/saveviews.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/setdefpatchview.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/solmovie-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/twocond-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/twocond-masked-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/twocond-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/wrappers.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/lib/tcl/fsgdfPlot.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT Scanned 145 directories and 2722 files, processed 4 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/freesurfer-8.2.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.d29kce + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + export FREESURFER_HOME=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer + FREESURFER_HOME=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer + export PATH=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin:/usr/bin:/bin:/usr/sbin:/sbin + PATH=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin:/usr/bin:/bin:/usr/sbin:/sbin + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_convert + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_info + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_binarize + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_vol2vol + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_mask + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mris_inflate + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mris_sphere + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mris_convert + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mris_info + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_watershed + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_normalize + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_em_register + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_ca_label + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_segment + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint All key binaries present + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_fill + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_tessellate + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/talairach_avi + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mrisp_paint + echo 'All key binaries present' + mri_convert --help + mri_info --help + true + mri_binarize --help + true + for bin in mri_convert mri_vol2vol mris_sphere + ldd /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_convert + grep -q 'not found' + for bin in mri_convert mri_vol2vol mris_sphere + ldd /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_vol2vol + grep -q 'not found' + for bin in mri_convert mri_vol2vol mris_sphere + ldd /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mris_sphere + grep -q 'not found' No missing shared library dependencies + echo 'No missing shared library dependencies' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: freesurfer-8.2.0-7.fc43.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ckuWC7 + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + cd freesurfer-8.2.0 + LICENSEDIR=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer + cp -pr /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/LICENSE.txt /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(cephes) bundled(dcm2niix) bundled(dicom) bundled(jpeg) bundled(minc) bundled(netcdf) bundled(nifti) bundled(nrrdio) bundled(svm-light) freesurfer = 8.2.0-7.fc43 freesurfer(aarch-64) = 8.2.0-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/csh /usr/bin/perl /usr/bin/python3 /usr/bin/sh /usr/bin/tclsh /usr/bin/tcsh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libITKCommon-5.4.so.1()(64bit) libQt6Core.so.6()(64bit) libQt6Core.so.6(Qt_6)(64bit) libQt6Gui.so.6()(64bit) libQt6Gui.so.6(Qt_6)(64bit) libQt6Widgets.so.6()(64bit) libQt6Widgets.so.6(Qt_6)(64bit) libX11.so.6()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrypt.so.2()(64bit) libcrypt.so.2(XCRYPT_2.0)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.2.5)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libgiftiio.so.0()(64bit) libglut.so.3()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libitkv3p_netlib-5.4.so.1()(64bit) libitkvnl-5.4.so.1()(64bit) libitkvnl_algo-5.4.so.1()(64bit) liblapack.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmvec.so.1()(64bit) libmvec.so.1(GLIBC_2.38)(64bit) libmwlaunchermain.so()(64bit) libpthread.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libvtkCommonCore.so.1()(64bit) libvtkCommonDataModel.so.1()(64bit) libvtkCommonExecutionModel.so.1()(64bit) libvtkFiltersGeneral.so.1()(64bit) libvtkFiltersHybrid.so.1()(64bit) libvtkFiltersModeling.so.1()(64bit) libvtksys.so.1()(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: python3-freesurfer-8.2.0-7.fc43.aarch64 Provides: python-freesurfer = 8.2.0-7.fc43 python3-freesurfer = 8.2.0-7.fc43 python3-freesurfer(aarch-64) = 8.2.0-7.fc43 python3.14-freesurfer = 8.2.0-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: freesurfer-freeview-8.2.0-7.fc43.aarch64 Provides: freesurfer-freeview = 8.2.0-7.fc43 freesurfer-freeview(aarch-64) = 8.2.0-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libITKCommon-5.4.so.1()(64bit) libITKgiftiio-5.4.so.1()(64bit) libITKniftiio-5.4.so.1()(64bit) libQt6Core.so.6()(64bit) libQt6Core.so.6(Qt_6)(64bit) libQt6Gui.so.6()(64bit) libQt6Gui.so.6(Qt_6)(64bit) libQt6OpenGLWidgets.so.6()(64bit) libQt6OpenGLWidgets.so.6(Qt_6)(64bit) libQt6Widgets.so.6()(64bit) libQt6Widgets.so.6(Qt_6)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrypt.so.2()(64bit) libcrypt.so.2(XCRYPT_2.0)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libitkv3p_netlib-5.4.so.1()(64bit) libitkvnl-5.4.so.1()(64bit) libitkvnl_algo-5.4.so.1()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libminc2.so.5.2.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libvtkCommonComputationalGeometry.so.1()(64bit) libvtkCommonCore.so.1()(64bit) libvtkCommonDataModel.so.1()(64bit) libvtkCommonExecutionModel.so.1()(64bit) libvtkCommonMath.so.1()(64bit) libvtkCommonMisc.so.1()(64bit) libvtkCommonTransforms.so.1()(64bit) libvtkFiltersCore.so.1()(64bit) libvtkFiltersExtraction.so.1()(64bit) libvtkFiltersGeneral.so.1()(64bit) libvtkFiltersHybrid.so.1()(64bit) libvtkFiltersModeling.so.1()(64bit) libvtkFiltersSources.so.1()(64bit) libvtkGUISupportQt.so.1()(64bit) libvtkIOCore.so.1()(64bit) libvtkIOExport.so.1()(64bit) libvtkIOGeometry.so.1()(64bit) libvtkIOImage.so.1()(64bit) libvtkIOLegacy.so.1()(64bit) libvtkImagingCore.so.1()(64bit) libvtkImagingGeneral.so.1()(64bit) libvtkImagingMath.so.1()(64bit) libvtkImagingMorphological.so.1()(64bit) libvtkInteractionStyle.so.1()(64bit) libvtkRenderingAnnotation.so.1()(64bit) libvtkRenderingCore.so.1()(64bit) libvtkRenderingOpenGL2.so.1()(64bit) libvtkRenderingVolume.so.1()(64bit) libvtksys.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: freesurfer-tracula-8.2.0-7.fc43.aarch64 Provides: freesurfer-tracula = 8.2.0-7.fc43 freesurfer-tracula(aarch-64) = 8.2.0-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/tcsh Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT Wrote: /builddir/build/RPMS/freesurfer-tracula-8.2.0-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/freesurfer-freeview-8.2.0-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/python3-freesurfer-8.2.0-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/freesurfer-8.2.0-7.fc43.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.yz4HkR + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + test -d /builddir/build/BUILD/freesurfer-8.2.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/freesurfer-8.2.0-build + rm -rf /builddir/build/BUILD/freesurfer-8.2.0-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Finish: rpmbuild freesurfer-8.2.0-7.fc43.src.rpm Finish: build phase for freesurfer-8.2.0-7.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-aarch64-1776874811.726303/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/freesurfer-8.2.0-7.fc43.src.rpm) Config(child) 85 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "freesurfer", "epoch": null, "version": "8.2.0", "release": "7.fc43", "arch": "aarch64" }, { "name": "python3-freesurfer", "epoch": null, "version": "8.2.0", "release": "7.fc43", "arch": "aarch64" }, { "name": "freesurfer-freeview", "epoch": null, "version": "8.2.0", "release": "7.fc43", "arch": "aarch64" }, { "name": "freesurfer-tracula", "epoch": null, "version": "8.2.0", "release": "7.fc43", "arch": "aarch64" }, { "name": "freesurfer", "epoch": null, "version": "8.2.0", "release": "7.fc43", "arch": "src" } ] } RPMResults finished