Name:           quit
Version:        3.4
Release:        1%{?dist}
Summary:        Quantitative Imaging Tools for MRI data processing

License:        MPL-2.0
URL:            https://github.com/spinicist/QUIT
Source0:        %{url}/archive/v%{version}/QUIT-%{version}.tar.gz
# Header-only argument parser library (not packaged in Fedora)
Source1:        https://github.com/Taywee/args/archive/refs/tags/6.4.8.tar.gz#/args-6.4.8.tar.gz
# CMake find module for bundled args library
Source2:        Findargs.cmake

BuildRequires:  cmake >= 3.12
BuildRequires:  gcc-c++
BuildRequires:  make
BuildRequires:  InsightToolkit5-devel >= 5.3.0
BuildRequires:  eigen3-devel
BuildRequires:  ceres-solver-devel
BuildRequires:  suitesparse-devel
BuildRequires:  blas-devel
BuildRequires:  lapack-devel
BuildRequires:  fmt-devel
BuildRequires:  json-devel

Requires:       InsightToolkit5%{?_isa}

Provides:       bundled(args) = 6.4.8
Provides:       bundled(NumericalIntegration)

%description
QUIT (QUantitative Imaging Tools) is a collection of programs for processing
quantitative MRI data, including DESPOT, relaxometry, magnetization transfer,
perfusion, susceptibility mapping, and more. All tools are accessed via the
single 'qi' command with subcommands, similar to git or bart.

QUIT processes NIfTI format neuroimaging files and accepts sequence parameters
via JSON input.

%prep
%autosetup -n QUIT-%{version}

# Install bundled args header
tar xf %{SOURCE1}
install -p -m 0644 args-6.4.8/args.hxx External/include/

# Install cmake find module for args
install -p -m 0644 %{SOURCE2} cmake/Findargs.cmake

# Remove ITK's bundled Eigen from include path to use system Eigen3 instead
# (ITK's itkeigen is incompatible with GCC 15)
sed -i '/include( ${ITK_USE_FILE} )/a\
get_property(_inc_dirs DIRECTORY PROPERTY INCLUDE_DIRECTORIES)\
list(FILTER _inc_dirs EXCLUDE REGEX "itkeigen")\
set_property(DIRECTORY PROPERTY INCLUDE_DIRECTORIES ${_inc_dirs})' CMakeLists.txt

%build
%cmake \
    -DCMAKE_MODULE_PATH:PATH="%{_builddir}/QUIT-%{version}/cmake" \
    -DExternal_Include_DIR:PATH="%{_builddir}/QUIT-%{version}/External/include" \
    -DBUILD_PARMESAN:BOOL=OFF
%cmake_build

%install
%cmake_install

%files
%license LICENSE.txt
%doc README.md CHANGELOG.md
%{_bindir}/qi

%changelog
* Sun Mar 29 2026 Morgan Hough <morgan.hough@gmail.com> - 3.4-1
- Initial package for Fedora