.. PyCoreSpecs

cc3d.core.PyCoreSpecs
======================


.. inheritance-diagram:: cc3d.core.PyCoreSpecs


.. autoclass:: cc3d.core.PyCoreSpecs.SpecValueError
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SpecValueCheckError
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SpecValueReadOnlyError
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SpecImportError
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SteerableError
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PyCoreSpecsBase
   :members:


.. autoclass:: cc3d.core.PyCoreSpecs._PyCoreParamAccessor
   :members:


.. autoclass:: cc3d.core.PyCoreSpecs._PyCoreXMLInterface
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PyCoreSteerableInterface
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PyCorePluginSpecs
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PyCoreSteppableSpecs
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PDEDiffusionDataSpecs
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SecretionParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PDESecretionDataSpecs
   :members:
   :show-inheritance:


.. autoattribute:: cc3d.core.PyCoreSpecs.BOUNDARYTYPESPDE


.. autoclass:: cc3d.core.PyCoreSpecs.PDEBoundaryConditions
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PDESolverFieldSpecs
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._PDESolverSpecs
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.PyCoreSpecsRoot
   :members:


.. autoclass:: cc3d.core.PyCoreSpecs.Metadata
   :members:
   :show-inheritance:


.. autoattribute:: cc3d.core.PyCoreSpecs.LATTICETYPES


.. autoattribute:: cc3d.core.PyCoreSpecs.BOUNDARYTYPESPOTTS


.. autoattribute:: cc3d.core.PyCoreSpecs.FLUCAMPFCNS


.. autoclass:: cc3d.core.PyCoreSpecs.PottsCore
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.CellTypePlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.VolumeEnergyParameter
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.VolumePlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SurfaceEnergyParameter
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SurfacePlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.NeighborTrackerPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ChemotaxisTypeParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ChemotaxisParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ChemotaxisPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ExternalPotentialParameter
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ExternalPotentialPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.CenterOfMassPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ContactEnergyParameter
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ContactPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ContactLocalFlexPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ContactInternalPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.AdhesionFlexBindingFormula
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.AdhesionFlexMoleculeDensity
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.AdhesionFlexPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs._AdhesionFlexMoleculeDensityAccessor
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.LengthEnergyParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.LengthConstraintPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ConnectivityPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ConnectivityGlobalPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SecretionField
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SecretionPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.LinkConstituentLaw
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.FocalPointPlasticityParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.FocalPointPlasticityPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.CurvatureInternalParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.CurvatureInternalTypeParameters
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.CurvaturePlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.BoundaryPixelTrackerPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.PixelTrackerPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.MomentOfInertiaPlugin
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.BoxWatcherSteppable
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.BlobInitializerRegion
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.BlobInitializer
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.UniformInitializerRegion
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.UniformInitializer
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.PIFInitializer
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.PIFDumperSteppable
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.DiffusionSolverFEDiffusionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.DiffusionSolverFESecretionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.DiffusionSolverFEField
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.DiffusionSolverFE
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.KernelDiffusionSolverDiffusionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.KernelDiffusionSolverSecretionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.KernelDiffusionSolverBoundaryConditions
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.KernelDiffusionSolverField
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.KernelDiffusionSolver
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ReactionDiffusionSolverFEDiffusionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ReactionDiffusionSolverFESecretionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ReactionDiffusionSolverFEField
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.ReactionDiffusionSolverFE
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SteadyStateDiffusionSolverDiffusionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SteadyStateDiffusionSolverSecretionData
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SteadyStateDiffusionSolverField
   :members:
   :show-inheritance:


.. autoclass:: cc3d.core.PyCoreSpecs.SteadyStateDiffusionSolver
   :members:
   :show-inheritance:


.. autoattribute:: cc3d.core.PyCoreSpecs.PLUGINS


.. autoattribute:: cc3d.core.PyCoreSpecs.STEPPABLES


.. autoattribute:: cc3d.core.PyCoreSpecs.INITIALIZERS


.. autoattribute:: cc3d.core.PyCoreSpecs.PDESOLVERS


.. autofunction:: cc3d.core.PyCoreSpecs.from_xml


.. autofunction:: cc3d.core.PyCoreSpecs.from_file


.. autofunction:: cc3d.core.PyCoreSpecs.build_xml
