# Demonstrates use of a DICOM file.
# You must unzip DICOM_Box.zip before you run this example.
# Reads in and displays a simple test DICOM that represents
# a box of water in air
# and uses Layered Mass Geometry to overlay a titanium sphere "implant"
# onto this DICOM geomtry.
# The display writes very slowly to the screen.
# This will be improved in an upcoming new release.
# Until then, one useful trick is that if you iconize the graphics window,
# then un-inconize it when drawing is done, the drawing will go much faster.

includeFile = HUtoMaterialSchneider.txt

s:Ge/World/Material  = "Vacuum"
d:Ge/World/HLX       = 2.0 m
d:Ge/World/HLY       = 2.0 m
d:Ge/World/HLZ       = 2.0 m
b:Ge/World/Invisible = "TRUE"

s:Ge/Patient/Parent         = "World"
s:Ge/Patient/Material       = "G4_WATER"
d:Ge/Patient/TransX         = 0. m
d:Ge/Patient/TransY         = 0. m
d:Ge/Patient/TransZ         = 0. m
d:Ge/Patient/RotX           = 0. deg
d:Ge/Patient/RotY           = 0. deg
d:Ge/Patient/RotZ           = 0. deg
s:Ge/Patient/Type           = "TsDicomPatient"
s:Ge/Patient/DicomDirectory = "DICOM_Box"

# Specify which slices to show.
# Comment this out or set to zero to show all slices.
# Set to -1 to show only center slice.
# Set to -2 to show first, center and last slice.
#iv:Ge/Patient/ShowSpecificSlicesX = 1 -2
#iv:Ge/Patient/ShowSpecificSlicesY = 1 -2
iv:Ge/Patient/ShowSpecificSlicesZ = 1 -2

# Overlay implant in a parallel world using Layered Mass Geometry.
s:Ge/Implant/Type       = "TsSphere"
s:Ge/Implant/Parent     = "Patient"
b:Ge/Implant/IsParallel = "True"
s:Ge/Implant/Material   = "Titanium"
d:Ge/Implant/RMin       = 0. cm
d:Ge/Implant/RMax       = 5.0 cm
d:Ge/Implant/SPhi       = 0.0 deg
d:Ge/Implant/DPhi       = 360. deg
d:Ge/Implant/STheta     = 0 deg
d:Ge/Implant/DTheta     = 180 deg
d:Ge/Implant/TransX     = 0. cm
d:Ge/Implant/TransY     = 0. cm
d:Ge/Implant/TransZ     = 15. cm
d:Ge/Implant/RotX       = 0. deg
d:Ge/Implant/RotY       = 0.0 deg
d:Ge/Implant/RotZ       = 0. deg
s:Ge/Implant/Color      = "yellow"

sv:Ph/Default/Modules = 1 "g4em-standard_opt0"
sv:Ph/Default/LayeredMassGeometryWorlds = 1 "Implant"

s:So/Example/Type                     = "Beam"
s:So/Example/Component                = "BeamPosition"
s:So/Example/BeamParticle             = "proton"
d:So/Example/BeamEnergy               = 30. MeV
u:So/Example/BeamEnergySpread         = 0.757504
s:So/Example/BeamPositionDistribution = "Flat"
s:So/Example/BeamPositionCutoffShape  = "Ellipse"
d:So/Example/BeamPositionCutoffX      = 5 cm
d:So/Example/BeamPositionCutoffY      = 20 cm
s:So/Example/BeamAngularDistribution  = "None"
i:So/Example/NumberOfHistoriesInRun   = 300

# Graphics
s:Gr/ViewA/Type           = "OpenGL"
sv:Gr/ViewA/VisibleWorlds = 1 "All"

# Graphics options to handle complex voxel geometries
i:Gr/ShowOnlyOutlineIfVoxelCountExceeds = 2100000
i:Gr/SwitchOGLtoOGLIifVoxelCountExceeds = 210

i:Ts/ShowHistoryCountAtInterval = 5000

b:Ts/PauseBeforeQuit = "False"
