Mock Version: 3.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1650942748.292216/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7ff3ba379d80>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fbvzczf7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fbvzczf7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '59207b8acad64855866362ac678ac787', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1650942748.292216/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fbvzczf7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
sh: line 1: /usr/bin/perl: No such file or directory
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1642550400
Wrote: /builddir/build/SRPMS/bionetgen-2.7.0-2.fc37.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1650942748.292216/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7ff3ba379d80>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fbvzczf7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fbvzczf7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'eeaa9a785c774a179d2b7bc9c7a42f3f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1650942748.292216/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fbvzczf7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1642550400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kluY50
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bionetgen-2.7.0
+ /usr/bin/mkdir -p bionetgen-2.7.0
+ cd bionetgen-2.7.0
+ /usr/bin/tar -xof -
+ /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.7.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ pushd bionetgen-BioNetGen-2.7.0
~/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0 ~/build/BUILD/bionetgen-2.7.0
+ rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip
+ tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3
cvode-2.6.0/README
cvode-2.6.0/INSTALL_NOTES
cvode-2.6.0/LICENSE
cvode-2.6.0/Makefile.in
cvode-2.6.0/configure.ac
cvode-2.6.0/acinclude.m4
cvode-2.6.0/config.hin
cvode-2.6.0/configure
cvode-2.6.0/CMakeLists.txt
cvode-2.6.0/config/config.guess
cvode-2.6.0/config/config.sub
cvode-2.6.0/config/install-sh
cvode-2.6.0/config/mkinstalldirs
cvode-2.6.0/config/rminstalldirs
cvode-2.6.0/config/ltmain.sh
cvode-2.6.0/config/mod_c.m4
cvode-2.6.0/config/mod_fortran.m4
cvode-2.6.0/config/cust_general.m4
cvode-2.6.0/config/CheckFortranFunctionExists.cmake
cvode-2.6.0/config/SundialsFortran.cmake
cvode-2.6.0/config/SundialsLapack.cmake
cvode-2.6.0/config/SundialsMPIC.cmake
cvode-2.6.0/config/SundialsMPIF.cmake
cvode-2.6.0/config/FindLAPACK.cmake
cvode-2.6.0/config/FindBLAS.cmake
cvode-2.6.0/config/FindMPI.cmake
cvode-2.6.0/bin/sundials-config.in
cvode-2.6.0/bin/fortran-update.in
cvode-2.6.0/bin/makefile-update.in
cvode-2.6.0/include/sundials/sundials_config.in
cvode-2.6.0/include/sundials/sundials_types.h
cvode-2.6.0/include/sundials/sundials_math.h
cvode-2.6.0/include/sundials/sundials_nvector.h
cvode-2.6.0/include/sundials/sundials_fnvector.h
cvode-2.6.0/include/sundials/sundials_dense.h
cvode-2.6.0/include/sundials/sundials_direct.h
cvode-2.6.0/include/sundials/sundials_band.h
cvode-2.6.0/include/sundials/sundials_lapack.h
cvode-2.6.0/include/sundials/sundials_spgmr.h
cvode-2.6.0/include/sundials/sundials_spbcgs.h
cvode-2.6.0/include/sundials/sundials_sptfqmr.h
cvode-2.6.0/include/sundials/sundials_iterative.h
cvode-2.6.0/include/nvector/nvector_serial.h
cvode-2.6.0/include/nvector/nvector_parallel.h
cvode-2.6.0/src/sundials/README
cvode-2.6.0/src/sundials/Makefile.in
cvode-2.6.0/src/sundials/CMakeLists.txt
cvode-2.6.0/src/sundials/sundials_math.c
cvode-2.6.0/src/sundials/sundials_nvector.c
cvode-2.6.0/src/sundials/sundials_dense.c
cvode-2.6.0/src/sundials/sundials_direct.c
cvode-2.6.0/src/sundials/sundials_band.c
cvode-2.6.0/src/sundials/sundials_spgmr.c
cvode-2.6.0/src/sundials/sundials_spbcgs.c
cvode-2.6.0/src/sundials/sundials_sptfqmr.c
cvode-2.6.0/src/sundials/sundials_iterative.c
cvode-2.6.0/src/nvec_ser/README
cvode-2.6.0/src/nvec_ser/Makefile.in
cvode-2.6.0/src/nvec_ser/CMakeLists.txt
cvode-2.6.0/src/nvec_ser/fnvector_serial.h
cvode-2.6.0/src/nvec_ser/nvector_serial.c
cvode-2.6.0/src/nvec_ser/fnvector_serial.c
cvode-2.6.0/src/nvec_par/README
cvode-2.6.0/src/nvec_par/Makefile.in
cvode-2.6.0/src/nvec_par/CMakeLists.txt
cvode-2.6.0/src/nvec_par/fnvector_parallel.h
cvode-2.6.0/src/nvec_par/nvector_parallel.c
cvode-2.6.0/src/nvec_par/fnvector_parallel.c
cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in
cvode-2.6.0/examples/templates/makefile_serial_C_ex.in
cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in
cvode-2.6.0/doc/cvode/cv_guide.pdf
cvode-2.6.0/doc/cvode/cv_examples.pdf
cvode-2.6.0/include/cvode/cvode.h
cvode-2.6.0/include/cvode/cvode_direct.h
cvode-2.6.0/include/cvode/cvode_dense.h
cvode-2.6.0/include/cvode/cvode_band.h
cvode-2.6.0/include/cvode/cvode_lapack.h
cvode-2.6.0/include/cvode/cvode_diag.h
cvode-2.6.0/include/cvode/cvode_spgmr.h
cvode-2.6.0/include/cvode/cvode_spbcgs.h
cvode-2.6.0/include/cvode/cvode_sptfqmr.h
cvode-2.6.0/include/cvode/cvode_spils.h
cvode-2.6.0/include/cvode/cvode_bandpre.h
cvode-2.6.0/include/cvode/cvode_bbdpre.h
cvode-2.6.0/src/cvode/LICENSE
cvode-2.6.0/src/cvode/README
cvode-2.6.0/src/cvode/Makefile.in
cvode-2.6.0/src/cvode/CMakeLists.txt
cvode-2.6.0/src/cvode/cvode.c
cvode-2.6.0/src/cvode/cvode_io.c
cvode-2.6.0/src/cvode/cvode_direct.c
cvode-2.6.0/src/cvode/cvode_dense.c
cvode-2.6.0/src/cvode/cvode_band.c
cvode-2.6.0/src/cvode/cvode_lapack.c
cvode-2.6.0/src/cvode/cvode_diag.c
cvode-2.6.0/src/cvode/cvode_spils.c
cvode-2.6.0/src/cvode/cvode_spgmr.c
cvode-2.6.0/src/cvode/cvode_spbcgs.c
cvode-2.6.0/src/cvode/cvode_sptfqmr.c
cvode-2.6.0/src/cvode/cvode_bandpre.c
cvode-2.6.0/src/cvode/cvode_bbdpre.c
cvode-2.6.0/src/cvode/cvode_impl.h
cvode-2.6.0/src/cvode/cvode_direct_impl.h
cvode-2.6.0/src/cvode/cvode_diag_impl.h
cvode-2.6.0/src/cvode/cvode_spils_impl.h
cvode-2.6.0/src/cvode/cvode_bandpre_impl.h
cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h
cvode-2.6.0/src/cvode/fcmix/Makefile.in
cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt
cvode-2.6.0/src/cvode/fcmix/fcvode.c
cvode-2.6.0/src/cvode/fcmix/fcvewt.c
cvode-2.6.0/src/cvode/fcmix/fcvpreco.c
cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c
cvode-2.6.0/src/cvode/fcmix/fcvband.c
cvode-2.6.0/src/cvode/fcmix/fcvdense.c
cvode-2.6.0/src/cvode/fcmix/fcvlapack.c
cvode-2.6.0/src/cvode/fcmix/fcvlapband.c
cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c
cvode-2.6.0/src/cvode/fcmix/fcvbp.c
cvode-2.6.0/src/cvode/fcmix/fcvbbd.c
cvode-2.6.0/src/cvode/fcmix/fcvroot.c
cvode-2.6.0/src/cvode/fcmix/fcvode.h
cvode-2.6.0/src/cvode/fcmix/fcvbp.h
cvode-2.6.0/src/cvode/fcmix/fcvbbd.h
cvode-2.6.0/src/cvode/fcmix/fcvroot.h
cvode-2.6.0/examples/cvode/serial/README
cvode-2.6.0/examples/cvode/serial/Makefile.in
cvode-2.6.0/examples/cvode/serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out
cvode-2.6.0/examples/cvode/fcmix_serial/README
cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out
cvode-2.6.0/examples/cvode/parallel/README
cvode-2.6.0/examples/cvode/parallel/Makefile.in
cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/README
cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out
~/build/BUILD/bionetgen-2.7.0
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dakGag
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh bionetgen 2.7.0-2.fc37 x86_64
~/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3 ~/build/BUILD/bionetgen-2.7.0
+ cd bionetgen-2.7.0
+ pushd bionetgen-BioNetGen-2.7.0/bng2/Network3
+ sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac
+ sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' cvode-2.6.0/configure.ac
+ sed -i 's/muparser_.*//' configure.ac Makefile.am
+ sed -i -r 's!(run_network_LDADD =).*!\1 libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser!' src/Makefile.am
+ autoreconf -iv --no-recursive
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal -I m4
aclocal: warning: couldn't open directory 'm4': No such file or directory
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: running: aclocal -I m4
autoreconf: running: /usr/bin/autoconf
autoreconf: running: /usr/bin/autoheader
autoreconf: running: automake --add-missing --copy --no-force
configure.ac:12: installing './ar-lib'
configure.ac:12: installing './compile'
configure.ac:16: installing './config.guess'
configure.ac:16: installing './config.sub'
configure.ac:6: installing './install-sh'
configure.ac:6: installing './missing'
src/Makefile.am: installing './depcomp'
autoreconf: Leaving directory '.'
+ warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2022-04-26 03:13:36.504544111 +0000
+++ ./configure	2022-04-26 03:13:37.369554097 +0000
@@ -1714,7 +1714,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2022-04-26 03:13:37.369554097 +0000
+++ ./configure	2022-04-26 03:13:37.386554294 +0000
@@ -7561,7 +7561,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="$SED -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -19585,7 +19585,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
--- ./cvode-2.6.0/configure.backup	2009-05-10 00:03:02.000000000 +0000
+++ ./cvode-2.6.0/configure	2022-04-26 03:13:37.433554836 +0000
@@ -13751,7 +13751,7 @@
 sympat='\([_A-Za-z][_A-Za-z0-9]*\)'
 
 # Transform an extracted symbol line into a proper C declaration
-lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'"
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 
 # Transform an extracted symbol line into symbol name and symbol address
 lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/  {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/  {\"\2\", (lt_ptr) \&\2},/p'"
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./cvode-2.6.0/config/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./cvode-2.6.0/config/config.sub
++ basename ./cvode-2.6.0/config/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./cvode-2.6.0/config/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './cvode-2.6.0/config/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./cvode-2.6.0/config/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./cvode-2.6.0/config/config.guess
++ basename ./cvode-2.6.0/config/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./cvode-2.6.0/config/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './cvode-2.6.0/config/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./cvode-2.6.0/config/ltmain.sh
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CC=gcc CXX=g++ F77=gfortran
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports the include directive... yes (GNU style)
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for x86_64-redhat-linux-gnu-ar... no
checking for x86_64-redhat-linux-gnu-lib... no
checking for x86_64-redhat-linux-gnu-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking for x86_64-redhat-linux-gnu-ar... ar
checking the archiver (ar) interface... (cached) ar
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64-redhat-linux-gnu-file... no
checking for file... file
checking for x86_64-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 7567:  -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory
ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for x86_64-redhat-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gawk... (cached) gawk
checking for x86_64-redhat-linux-gnu-gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) none
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for inline... inline
checking for size_t... yes
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for floor... no
checking for pow... no
checking for rint... no
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strpbrk... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr'  '--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=x86_64-redhat-linux-gnu' 'host_alias=x86_64-redhat-linux-gnu' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld' 'LT_SYS_LIBRARY_PATH=/usr/lib64:' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' --cache-file=/dev/null --srcdir=.
---------------------------------
Running SUNDIALS Configure Script
---------------------------------
Initialization
--------------
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
C Compiler Settings
-------------------
checking for x86_64-redhat-linux-gnu-cc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking floating-point data type to use... double
checking for C compiler flags... none
checking how to run the C preprocessor... gcc -E
checking for C/C++ preprocessor flags... none
checking for linker flags... none
checking for extra libraries... none
checking for ANSI C header files... yes
checking for stdlib.h... (cached) yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for abs in -lm... yes
checking for fabs in -lm... yes
checking for pow in -lm... yes
checking for sqrt in -lm... yes
checking for additional required C libraries... -lm 
checking for int... yes
checking size of int... 4
checking for long int... yes
checking size of long int... 8
checking for double... yes
checking size of double... 8
checking for egrep... (cached) /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking if gcc is a C++ compiler... no
Fortran Settings
----------------
checking for x86_64-redhat-linux-gnu-f77... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for extra Fortran compiler flags... none
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lgfortran -lm -lquadmath
checking which linker to use... gfortran
checking for Fortran name-mangling scheme of C identifiers... lower case  + one underscore
checking for Fortran name-mangling scheme of C identifiers with underscores... lower case  + one underscore
checking for dgemm_... no
checking for dgemm_ in -lcxml... no
checking for dgemm_ in -ldxml... no
checking for dgemm_ in -lscs... no
checking for dgemm_ in -lcomplib.sgimath... no
checking for dgemm_ in -lblas... no
checking for dgemm_ in -lblas... (cached) no
checking for Blas/Lapack library linkage... "no"
   Unable to determine Blas/Lapack library linkage.
   Try using --with-blas and --with-lapack.
   Disabling compilation of Blas/Lapack interfaces...
MPI-C Settings
--------------
checking if using MPI-C script... yes
checking if absolute path to mpicc was given... no
checking for mpicc... none
   Unable to find a functional MPI-C compiler.
configure: WARNING: cannot find MPI-C compiler
   Try using --with-mpicc to specify a MPI-C compiler script,
   --with-mpi-incdir, --with-mpi-libdir and --with-mpi-libs
   to specify the locations of all relevant MPI files, or
   --with-mpi-root to specify the base installation directory
   of the MPI implementation to be used.
   Disabling the parallel NVECTOR module and all parallel examples...
Libtool Settings
----------------
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for x86_64-redhat-linux-gnu-ar... no
checking for ar... ar
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
Create Makefiles and configuration files
----------------------------------------
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/sundials/Makefile
config.status: creating src/nvec_ser/Makefile
config.status: creating src/cvode/Makefile
config.status: creating src/cvode/fcmix/Makefile
config.status: creating include/sundials/sundials_config.h
config.status: creating bin/sundials-config
config.status: creating config.h
***************
*   WARNING   *
***************
At least one warning was issued. Some features were disabled.
Review the configure output and/or the contents of config.log
before proceeding with the build.
------------------------------
SUNDIALS Configuration Summary
------------------------------
Configuration
-------------
  Host System:               x86_64-redhat-linux-gnu
  Build System:              x86_64-redhat-linux-gnu
  C Preprocessor:            gcc -E
  C Preprocessor Flags:      
  C Compiler:	             gcc
  C Compiler Flags           -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  C Linker:                  gcc
  Linker Flags:              -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld
  Libraries:                 -lm 
  Fortran Compiler:          gfortran
  Fortran Compiler Flags:    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules
  Fortran Linker:            gfortran
  Extra Fortran Libraries:    -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lgfortran -lm -lquadmath
  srcdir:                    /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0
  builddir:                  /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0
  prefix:                    /usr
  exec_prefix:               /usr
  includedir:                /usr/include
  libdir:                    /usr/lib64
Modules
-------
  CVODE  FCVODE
  Type 'make' and then 'make install' to build and install SUNDIALS 2.4.0.
----------------------------------
Finished SUNDIALS Configure Script
----------------------------------
++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
++ sed -e s/-Werror=format-security/-Wno-error=format-security/g
+ SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C cvode-2.6.0 V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized'
----------------------
Make src/sundials...
----------------------
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c -o sundials_direct.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c -o sundials_band.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c -o sundials_dense.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c -o sundials_iterative.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c -o sundials_math.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c -o sundials_nvector.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c -o sundials_spgmr.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c -o sundials_spbcgs.o
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c -o sundials_sptfqmr.o
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
----------------------
Make src/nvec_ser...
----------------------
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Nothing to be done for 'lib_without_bl'.
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c -o fnvector_serial.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fnvecserial.la fnvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -lm  -version-info 0:2:0
mkdir .libs
ar cru .libs/libsundials_fnvecserial.a  fnvector_serial.o ../../src/sundials/sundials_math.o
ranlib .libs/libsundials_fnvecserial.a
creating libsundials_fnvecserial.la
(cd .libs && rm -f libsundials_fnvecserial.la && ln -s ../libsundials_fnvecserial.la libsundials_fnvecserial.la)
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c -o nvector_serial.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_nvecserial.la nvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -lm  -version-info 0:2:0
ar cru .libs/libsundials_nvecserial.a  nvector_serial.o ../../src/sundials/sundials_math.o
ranlib .libs/libsundials_nvecserial.a
creating libsundials_nvecserial.la
(cd .libs && rm -f libsundials_nvecserial.la && ln -s ../libsundials_nvecserial.la libsundials_nvecserial.la)
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser'
----------------------
Make src/cvode...
----------------------
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Nothing to be done for 'lib_without_bl'.
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c -o cvode_io.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c -o cvode_direct.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c -o cvode_band.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c -o cvode_dense.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c -o cvode_diag.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c -o cvode.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c -o cvode_spils.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c -o cvode_spbcgs.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c -o cvode_spgmr.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c -o cvode_sptfqmr.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c -o cvode_bandpre.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc  -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c
 gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c -o cvode_bbdpre.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[4]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[4]: Nothing to be done for 'lib_without_bl'.
make[4]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials'
/bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_cvode.la cvode.lo cvode_io.lo cvode_direct.lo cvode_band.lo cvode_dense.lo cvode_diag.lo cvode_spils.lo cvode_spbcgs.lo cvode_spgmr.lo cvode_sptfqmr.lo cvode_bandpre.lo cvode_bbdpre.lo ../../src/sundials/sundials_band.lo ../../src/sundials/sundials_dense.lo ../../src/sundials/sundials_direct.lo ../../src/sundials/sundials_iterative.lo ../../src/sundials/sundials_spgmr.lo ../../src/sundials/sundials_spbcgs.lo ../../src/sundials/sundials_sptfqmr.lo ../../src/sundials/sundials_math.lo ../../src/sundials/sundials_nvector.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -lm  -version-info 1:0:0
mkdir .libs
ar cru .libs/libsundials_cvode.a  cvode.o cvode_io.o cvode_direct.o cvode_band.o cvode_dense.o cvode_diag.o cvode_spils.o cvode_spbcgs.o cvode_spgmr.o cvode_sptfqmr.o cvode_bandpre.o cvode_bbdpre.o ../../src/sundials/sundials_band.o ../../src/sundials/sundials_dense.o ../../src/sundials/sundials_direct.o ../../src/sundials/sundials_iterative.o ../../src/sundials/sundials_spgmr.o ../../src/sundials/sundials_spbcgs.o ../../src/sundials/sundials_sptfqmr.o ../../src/sundials/sundials_math.o ../../src/sundials/sundials_nvector.o
ranlib .libs/libsundials_cvode.a
creating libsundials_cvode.la
(cd .libs && rm -f libsundials_cvode.la && ln -s ../libsundials_cvode.la libsundials_cvode.la)
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
----------------------
Make src/cvode/fcmix...
----------------------
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c -o fcvband.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c -o fcvode.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c -o fcvdense.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c -o fcvjtimes.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c -o fcvpreco.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c -o fcvbbd.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c -o fcvbp.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c -o fcvroot.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc  -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c
 gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c -o fcvewt.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fcvode.la fcvode.lo fcvband.lo fcvdense.lo fcvjtimes.lo fcvpreco.lo fcvbbd.lo fcvbp.lo fcvroot.lo fcvewt.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -lm  -static -version-info 0:1:0
mkdir .libs
ar cru .libs/libsundials_fcvode.a  fcvode.o fcvband.o fcvdense.o fcvjtimes.o fcvpreco.o fcvbbd.o fcvbp.o fcvroot.o fcvewt.o
ranlib .libs/libsundials_fcvode.a
creating libsundials_fcvode.la
(cd .libs && rm -f libsundials_fcvode.la && ln -s ../libsundials_fcvode.la libsundials_fcvode.la)
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C src V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)':
network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1132 |         register int i;
      |                      ^
network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)':
network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1543 |         register int i;
      |                      ^
network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)':
network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1925 |         register int i;
      |                      ^
network.cpp: In function 'int n_species_active()':
network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2068 |         register int i;
      |                      ^
network.cpp: In function 'int get_conc_network(double*)':
network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2088 |         register int i;
      |                      ^
network.cpp: In function 'int set_conc_network(double*)':
network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2110 |         register int i, n_species;
      |                      ^
network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2110 |         register int i, n_species;
      |                         ^~~~~~~~~
network.cpp: In function 'int rxn_rates_network(double*, int)':
network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2729 |         register int i;
      |                      ^
network.cpp: In function 'int print_derivs_network(FILE*)':
network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2957 |         register int i/*,j*/;
      |                      ^
network.cpp: In function 'int print_derivs_species_network(FILE*)':
network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 2990 |         register int i/*,j*/;
      |                      ^
network.cpp: In function 'int print_rates_network(FILE*, int)':
network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3019 |         register int i;
      |                      ^
network.cpp: In function 'void sparse_jac_matlab(FILE*)':
network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                      ^
network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                         ^
network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                            ^
network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                               ^
network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)':
network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                      ^
network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                         ^
network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                            ^
network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                               ^
network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)':
network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                      ^
network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                         ^
network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                            ^
network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                               ^
network.cpp: In function 'int print_flux_network(FILE*, double, int)':
network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 4037 |         register int i;
      |                      ^
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
run_network.cpp: In function 'int main(int, char**)':
run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   95 |         register int i/*, j*/;
      |                      ^
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c  -fPIC -DPIC -o util/mathutils/.libs/cabs.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1
In file included from util/mathutils/cabs.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c  -fPIC -DPIC -o util/mathutils/.libs/allocate.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1
util/mathutils/allocate.c: In function 'ALLOC_MATRIX':
util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable]
    9 |     register int i,j;
      |                    ^
util/mathutils/allocate.c: In function 'IALLOC_MATRIX':
util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable]
  100 |     register int i,j;
      |                    ^
util/mathutils/allocate.c: In function 'ZALLOC_MATRIX':
util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable]
  191 |     register int i,j;
      |                    ^
In file included from util/mathutils/allocate.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c  -fPIC -DPIC -o util/mathutils/.libs/cadd.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1
In file included from util/mathutils/cadd.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c  -fPIC -DPIC -o util/mathutils/.libs/cconj.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1
In file included from util/mathutils/cconj.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c  -fPIC -DPIC -o util/mathutils/.libs/cmult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1
In file included from util/mathutils/cmult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c  -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1
In file included from util/mathutils/complex_zero.c:2:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c  -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1
In file included from util/mathutils/copy_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c  -fPIC -DPIC -o util/mathutils/.libs/cprob.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1
In file included from util/mathutils/cprob.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c  -fPIC -DPIC -o util/mathutils/.libs/csub.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/csub.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c  -fPIC -DPIC -o util/mathutils/.libs/dotp.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/dotp.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c  -fPIC -DPIC -o util/mathutils/.libs/expi.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/expi.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c  -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1
In file included from util/mathutils/eigensystem.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c  -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1
In file included from util/mathutils/gram_schmidt.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c  -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1
In file included from util/mathutils/herm_matrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c  -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1
In file included from util/mathutils/herm_matrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c  -fPIC -DPIC -o util/mathutils/.libs/icmult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/icmult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/init.lo util/mathutils/init.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c  -fPIC -DPIC -o util/mathutils/.libs/init.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/init.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c  -fPIC -DPIC -o util/mathutils/.libs/integration.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/integration.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c  -fPIC -DPIC -o util/mathutils/.libs/linsolve.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
util/mathutils/linsolve.c: In function 'LINSOLVE':
util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable]
   16 |     register int i,j;
      |                    ^
util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable]
   16 |     register int i,j;
      |                  ^
In file included from util/mathutils/linsolve.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c  -fPIC -DPIC -o util/mathutils/.libs/matherr.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matherr.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c  -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrix_add.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c  -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrix_elt.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c  -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c  -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrix_sub.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c  -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrix_transpose.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c  -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c  -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/matrixexp.c:5:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c  -fPIC -DPIC -o util/mathutils/.libs/norm.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
util/mathutils/norm.c: In function 'NORM':
util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable]
   14 |     double norm;
      |            ^~~~
In file included from util/mathutils/norm.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c  -fPIC -DPIC -o util/mathutils/.libs/minimum.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
util/mathutils/minimum.c: In function 'MIN_BRACKET':
util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable]
   17 |     double ulim,u,r,q,fu,dum;
      |                          ^~~
In file included from util/mathutils/minimum.c:3:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
util/mathutils/minimum.c: In function 'MIN_FIND':
util/mathutils/minimum.c:117:38: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized]
  117 |             if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x))
      |                                 ~~~~~^~~~~~
util/mathutils/minimum.c:95:12: note: 'e' was declared here
   95 |     double e=0.0;
      |            ^
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c  -fPIC -DPIC -o util/mathutils/.libs/normsq.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
util/mathutils/normsq.c: In function 'NORMSQ':
util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable]
   13 |     double norm;
      |            ^~~~
In file included from util/mathutils/normsq.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/project.lo util/mathutils/project.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c  -fPIC -DPIC -o util/mathutils/.libs/project.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/project.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/random.lo util/mathutils/random.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c  -fPIC -DPIC -o util/mathutils/.libs/random.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
In file included from util/mathutils/random.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c  -fPIC -DPIC -o util/mathutils/.libs/rcmult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1
In file included from util/mathutils/rcmult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c  -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1
util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE':
util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable]
    5 |     double **At, *Aptr, *Atptr;
      |                          ^~~~~
util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable]
    5 |     double **At, *Aptr, *Atptr;
      |                   ^~~~
In file included from util/mathutils/rect_transpose.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c  -fPIC -DPIC -o util/mathutils/.libs/roots.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1
In file included from util/mathutils/roots.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
util/mathutils/roots.c: In function 'ROOT_FIND':
util/mathutils/roots.c:69:24: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized]
   69 |             min2=fabs(e*q);
      |                       ~^~
util/mathutils/roots.c:32:29: note: 'e' was declared here
   32 |     double a=x1,b=x2,c=x2,d,e,min1,min2;
      |                             ^
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c  -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1
In file included from util/mathutils/scale_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c  -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1
In file included from util/mathutils/runge-kutta.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c  -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1
In file included from util/mathutils/sum_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c  -fPIC -DPIC -o util/mathutils/.libs/splines.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1
In file included from util/mathutils/splines.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c  -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1
In file included from util/mathutils/sym_linsolve.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c  -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1
In file included from util/mathutils/sym_matrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c  -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1
In file included from util/mathutils/sym_matrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c  -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1
In file included from util/mathutils/sympos_linsolve.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c  -fPIC -DPIC -o util/mathutils/.libs/svd.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1
In file included from util/mathutils/svd.c:2:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c  -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1
util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
    3 | main()
      | ^~~~
In file included from util/mathutils/test_transpose.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c  -fPIC -DPIC -o util/mathutils/.libs/testdummy.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1
util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
    3 | main(){
      | ^~~~
util/mathutils/testdummy.c: In function 'main':
util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable]
    5 |     int incx=1;
      |         ^~~~
util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
    9 |     scanf("%d", &n);
      |     ^~~~~~~~~~~~~~~
util/mathutils/testdummy.c:15:9: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   15 |         scanf("%lf", x+i);
      |         ^~~~~~~~~~~~~~~~~
In file included from util/mathutils/testdummy.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c  -fPIC -DPIC -o util/mathutils/.libs/testspline.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1
util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int]
    7 | main()
      | ^~~~
In file included from util/mathutils/testspline.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c  -fPIC -DPIC -o util/mathutils/.libs/testgram.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1
util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
    3 | main(int argc, char *argv[]){
      | ^~~~
util/mathutils/testgram.c: In function 'main':
util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable]
    7 |   double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                                                               ^
util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable]
    7 |   double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                                                          ^
util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable]
    7 |   double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                                                    ^~~
util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable]
    7 |   double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                                              ^~
util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable]
    5 |   int nr, n_run;
      |       ^~
In file included from util/mathutils/testgram.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c  -fPIC -DPIC -o util/mathutils/.libs/testsvd.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1
util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
    3 | main(int argc, char *argv[]){
      | ^~~~
util/mathutils/testsvd.c: In function 'main':
util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable]
    7 |   double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                            ^~~
util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable]
    7 |   double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                      ^~
util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable]
    7 |   double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
      |                 ^
In file included from util/mathutils/testsvd.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c  -fPIC -DPIC -o util/mathutils/.libs/vector_add.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1
In file included from util/mathutils/vector_add.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c  -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1
In file included from util/mathutils/vector_dist.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c  -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1
In file included from util/mathutils/zcopy_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c  -fPIC -DPIC -o util/mathutils/.libs/zdotc.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1
In file included from util/mathutils/zdotc.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c  -fPIC -DPIC -o util/mathutils/.libs/zdotu.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1
In file included from util/mathutils/zdotu.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c  -fPIC -DPIC -o util/mathutils/.libs/testutils.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1
util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int]
    6 | main (int argc, char *argv[])
      | ^~~~
util/mathutils/testutils.c: In function 'main':
util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable]
   15 |   dcomplex z1;
      |            ^~
util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable]
   10 |   int seed;
      |       ^~~~
util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable]
    8 |   int i,j,k;
      |           ^
In file included from util/mathutils/testutils.c:2:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c  -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_add.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c  -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c  -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_sub.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c  -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_transpose.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c  -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c  -fPIC -DPIC -o util/mathutils/.libs/znorm.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1
In file included from util/mathutils/znorm.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c  -fPIC -DPIC -o util/mathutils/.libs/znormsq.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1
In file included from util/mathutils/znormsq.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c  -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1
In file included from util/mathutils/zrscale_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c  -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1
In file included from util/mathutils/zscale_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c  -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1
In file included from util/mathutils/zsum_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c  -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1
In file included from util/mathutils/zsym_linsolve.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -o libmathutils.la  util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo  
libtool: link: ar cr .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o 
libtool: link: ranlib .libs/libmathutils.a
libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" )
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser 
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o  ./.libs/libmathutils.a ../cvode-2.6.0/src/nvec_ser/.libs/libsundials_nvecserial.a ../cvode-2.6.0/src/cvode/.libs/libsundials_cvode.a -lm -lmuparser
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
+ popd
~/build/BUILD/bionetgen-2.7.0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.CMc5gJ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64
++ dirname /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.7.0
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64 'INSTALL=/usr/bin/install -p' -C bionetgen-BioNetGen-2.7.0/bng2/Network3/src
make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/bin'
libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/bin/run_network
make[1]: Nothing to be done for 'install-data-am'.
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src'
+ mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen'
+ cp -r bionetgen-BioNetGen-2.7.0/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -r bionetgen-BioNetGen-2.7.0/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -a bionetgen-BioNetGen-2.7.0/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/
+ rm -f /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_x86_64-linux
+ rm -f /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.7.0-2.fc37 --unique-debug-suffix -2.7.0-2.fc37.x86_64 --unique-debug-src-base bionetgen-2.7.0-2.fc37.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.7.0
extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/bin/run_network
original debug info size: 7356kB, size after compression: 5432kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
1829 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.zubiOo
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh bionetgen 2.7.0-2.fc37 x86_64
+ cd bionetgen-2.7.0
+ pushd bionetgen-BioNetGen-2.7.0/bng2/Models2
~/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Models2 ~/build/BUILD/bionetgen-2.7.0
+ install -pm 755 ../Network3/src/run_network -D ./bin/run_network_x86_64-linux
+ install -pm 755 ../Network3/src/run_network -D ../bin/run_network_x86_64-linux
+ echo 'Running some tests ...'
Running some tests ...
+ ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl
BioNetGen version 2.7.0
Reading from file CaOscillate_Func.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Func )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     4 species      8 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   6:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Wrote network in net format to ./CaOscillate_Func.net.
CPU TIME: generate_network 0.01 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net.
Wrote network in net format to ./CaOscillate_Func.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200
[simulation PID is: 15879]
run_network 3.0
Read 17 parameters from ./CaOscillate_Func.net
Read 4 species from ./CaOscillate_Func.net
Read 4 group(s) from ./CaOscillate_Func.net
Read 4 function(s) from ./CaOscillate_Func.net
Read 8 reaction(s) from ./CaOscillate_Func.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
           time       n_steps n_deriv_calls
           0.00             0             0
           0.10           717           850
           0.20           741           879
           0.30           765           904
           0.40           790           930
           0.50           814           960
           0.60           838           985
           0.70           863          1015
           0.80           887          1040
           0.90           912          1067
           1.00           936          1099
           1.10           961          1129
           1.20           993          1171
           1.30          1025          1207
           1.40          1063          1260
           1.50          1105          1310
           1.60          1152          1368
           1.70          1208          1436
           1.80          1281          1523
           1.90          1354          1611
           2.00          1434          1704
           2.10          1509          1792
           2.20          1584          1871
           2.30          1638          1932
           2.40          1688          1984
           2.50          1741          2047
           2.60          1880          2222
           2.70          2351          2772
           2.80          2453          2892
           2.90          2501          2946
           3.00          2552          3007
           3.10          2616          3078
           3.20          2672          3143
           3.30          2730          3208
           3.40          2789          3271
           3.50          2847          3333
           3.60          2903          3395
           3.70          2956          3464
           3.80          3084          3620
           3.90          3240          3799
           4.00          3350          3920
           4.10          3415          3990
           4.20          3465          4046
           4.30          3516          4103
           4.40          3563          4151
           4.50          3599          4196
           4.60          3644          4249
           4.70          3690          4304
           4.80          3746          4371
           4.90          3802          4441
           5.00          3856          4498
           5.10          3895          4545
           5.20          3929          4585
           5.30          3961          4618
           5.40          3984          4642
           5.50          4007          4671
           5.60          4031          4697
           5.70          4054          4722
           5.80          4075          4750
           5.90          4095          4773
           6.00          4115          4795
           6.10          4136          4821
           6.20          4155          4841
           6.30          4168          4854
           6.40          4181          4872
           6.50          4194          4885
           6.60          4207          4898
           6.70          4220          4911
           6.80          4231          4927
           6.90          4239          4935
           7.00          4248          4945
           7.10          4257          4954
           7.20          4265          4963
           7.30          4274          4972
           7.40          4283          4982
           7.50          4292          4996
           7.60          4300          5004
           7.70          4309          5015
           7.80          4318          5024
           7.90          4329          5044
           8.00          4341          5059
           8.10          4352          5077
           8.20          4364          5090
           8.30          4377          5108
           8.40          4396          5135
           8.50          4423          5174
           8.60          4453          5207
           8.70          4492          5256
           8.80          4549          5327
           8.90          4658          5465
           9.00          4979          5847
           9.10          5283          6181
           9.20          5392          6300
           9.30          5431          6345
           9.40          5447          6363
           9.50          5460          6376
           9.60          5473          6389
           9.70          5485          6405
           9.80          5498          6418
           9.90          5511          6431
          10.00          5524          6445
          10.10          5537          6458
          10.20          5549          6475
          10.30          5562          6489
          10.40          5575          6502
          10.50          5588          6516
          10.60          5601          6534
          10.70          5613          6547
          10.80          5626          6562
          10.90          5639          6575
          11.00          5652          6590
          11.10          5664          6608
          11.20          5677          6621
          11.30          5690          6638
          11.40          5708          6656
          11.50          5725          6674
          11.60          5742          6696
          11.70          5759          6714
          11.80          5777          6733
          11.90          5794          6755
          12.00          5811          6773
          12.10          5829          6791
          12.20          5846          6809
          12.30          5863          6832
          12.40          5880          6851
          12.50          5898          6871
          12.60          5915          6894
          12.70          5934          6915
          12.80          5958          6940
          12.90          5981          6969
          13.00          6004          6994
          13.10          6031          7026
          13.20          6063          7065
          13.30          6095          7100
          13.40          6129          7145
          13.50          6172          7196
          13.60          6218          7252
          13.70          6272          7316
          13.80          6345          7398
          13.90          6417          7485
          14.00          6498          7583
          14.10          6573          7669
          14.20          6648          7748
          14.30          6704          7810
          14.40          6754          7867
          14.50          6806          7929
          14.60          6933          8086
          14.70          7392          8627
          14.80          7505          8764
          14.90          7557          8822
          15.00          7606          8884
          15.10          7667          8954
          15.20          7727          9021
          15.30          7788          9088
          15.40          7849          9153
          15.50          7910          9218
          15.60          7968          9281
          15.70          8020          9346
          15.80          8144          9498
          15.90          8284          9667
          16.00          8401          9791
          16.10          8469          9868
          16.20          8525          9928
          16.30          8581          9988
          16.40          8629         10037
          16.50          8666         10082
          16.60          8711         10136
          16.70          8761         10188
          16.80          8819         10257
          16.90          8879         10326
          17.00          8937         10391
          17.10          8976         10441
          17.20          9012         10480
          17.30          9045         10518
          17.40          9069         10542
          17.50          9092         10572
          17.60          9115         10597
          17.70          9139         10623
          17.80          9160         10651
          17.90          9180         10674
          18.00          9200         10696
          18.10          9221         10722
          18.20          9240         10742
          18.30          9251         10758
          18.40          9262         10769
          18.50          9273         10785
          18.60          9284         10796
          18.70          9295         10807
          18.80          9306         10818
          18.90          9316         10828
          19.00          9327         10839
          19.10          9338         10854
          19.20          9349         10865
          19.30          9360         10876
          19.40          9371         10887
          19.50          9382         10898
          19.60          9393         10913
          19.70          9404         10924
          19.80          9415         10935
          19.90          9426         10946
          20.00          9437         10959
Time course of concentrations written to file ./CaOscillate_Func.cdat.
Time course of groups written to file ./CaOscillate_Func.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./CaOscillate_Func.cdat
CPU TIME: simulate 0.01 s.
Finished processing file CaOscillate_Func.bngl.
CPU TIME: total 0.03 s.
BioNetGen version 2.7.0
Reading from file CaOscillate_Sat.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Sat )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     4 species      8 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   6:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Wrote network in net format to ./CaOscillate_Sat.net.
CPU TIME: generate_network 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net.
Wrote network in net format to ./CaOscillate_Sat.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200
[simulation PID is: 15881]
run_network 3.0
Read 17 parameters from ./CaOscillate_Sat.net
Read 4 species from ./CaOscillate_Sat.net
Read 4 group(s) from ./CaOscillate_Sat.net
Read 0 function(s) from ./CaOscillate_Sat.net
Read 8 reaction(s) from ./CaOscillate_Sat.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
           time       n_steps n_deriv_calls
           0.00             0             0
           0.10           719           851
           0.20           753           889
           0.30           788           924
           0.40           819           960
           0.50           842           984
           0.60           865          1008
           0.70           888          1036
           0.80           911          1060
           0.90           934          1091
           1.00           957          1116
           1.10           983          1146
           1.20          1014          1184
           1.30          1046          1218
           1.40          1079          1259
           1.50          1122          1310
           1.60          1169          1362
           1.70          1226          1428
           1.80          1296          1512
           1.90          1370          1605
           2.00          1450          1698
           2.10          1526          1787
           2.20          1601          1866
           2.30          1655          1927
           2.40          1705          1979
           2.50          1759          2043
           2.60          1897          2217
           2.70          2371          2794
           2.80          2470          2900
           2.90          2528          2962
           3.00          2575          3020
           3.10          2628          3083
           3.20          2680          3143
           3.30          2732          3204
           3.40          2784          3261
           3.50          2836          3315
           3.60          2888          3373
           3.70          2941          3438
           3.80          3067          3595
           3.90          3224          3777
           4.00          3337          3901
           4.10          3402          3971
           4.20          3456          4029
           4.30          3510          4087
           4.40          3558          4140
           4.50          3594          4180
           4.60          3640          4236
           4.70          3688          4292
           4.80          3746          4359
           4.90          3805          4430
           5.00          3862          4493
           5.10          3903          4540
           5.20          3941          4580
           5.30          3975          4619
           5.40          4000          4645
           5.50          4025          4675
           5.60          4051          4705
           5.70          4076          4735
           5.80          4099          4760
           5.90          4119          4782
           6.00          4140          4808
           6.10          4162          4831
           6.20          4181          4855
           6.30          4192          4871
           6.40          4204          4883
           6.50          4216          4896
           6.60          4228          4908
           6.70          4240          4920
           6.80          4252          4936
           6.90          4264          4948
           7.00          4276          4960
           7.10          4288          4972
           7.20          4299          4983
           7.30          4311          4999
           7.40          4323          5011
           7.50          4335          5023
           7.60          4347          5035
           7.70          4359          5047
           7.80          4371          5063
           7.90          4383          5075
           8.00          4395          5087
           8.10          4407          5099
           8.20          4419          5113
           8.30          4434          5143
           8.40          4450          5161
           8.50          4471          5189
           8.60          4498          5230
           8.70          4533          5272
           8.80          4592          5345
           8.90          4696          5473
           9.00          5025          5862
           9.10          5314          6183
           9.20          5422          6298
           9.30          5462          6344
           9.40          5475          6364
           9.50          5485          6378
           9.60          5494          6387
           9.70          5503          6402
           9.80          5513          6412
           9.90          5522          6423
          10.00          5532          6433
          10.10          5541          6444
          10.20          5551          6454
          10.30          5562          6471
          10.40          5575          6485
          10.50          5588          6498
          10.60          5600          6511
          10.70          5613          6525
          10.80          5626          6544
          10.90          5638          6558
          11.00          5651          6571
          11.10          5664          6586
          11.20          5677          6605
          11.30          5691          6621
          11.40          5708          6639
          11.50          5725          6661
          11.60          5742          6678
          11.70          5760          6697
          11.80          5777          6715
          11.90          5794          6737
          12.00          5811          6755
          12.10          5828          6773
          12.20          5845          6795
          12.30          5862          6813
          12.40          5880          6833
          12.50          5897          6852
          12.60          5914          6875
          12.70          5934          6897
          12.80          5957          6921
          12.90          5980          6950
          13.00          6003          6975
          13.10          6031          7008
          13.20          6063          7047
          13.30          6094          7086
          13.40          6128          7126
          13.50          6171          7177
          13.60          6218          7234
          13.70          6273          7301
          13.80          6345          7381
          13.90          6417          7472
          14.00          6501          7568
          14.10          6578          7655
          14.20          6655          7740
          14.30          6708          7800
          14.40          6759          7858
          14.50          6813          7917
          14.60          6940          8079
          14.70          7388          8611
          14.80          7506          8741
          14.90          7559          8800
          15.00          7608          8861
          15.10          7668          8930
          15.20          7728          8997
          15.30          7788          9063
          15.40          7848          9127
          15.50          7908          9191
          15.60          7965          9253
          15.70          8017          9318
          15.80          8141          9471
          15.90          8281          9636
          16.00          8398          9764
          16.10          8466          9837
          16.20          8522          9897
          16.30          8578          9957
          16.40          8626         10010
          16.50          8664         10052
          16.60          8708         10105
          16.70          8758         10161
          16.80          8816         10230
          16.90          8876         10295
          17.00          8934         10360
          17.10          8976         10408
          17.20          9014         10452
          17.30          9048         10487
          17.40          9073         10516
          17.50          9099         10543
          17.60          9124         10576
          17.70          9149         10602
          17.80          9172         10627
          17.90          9192         10653
          18.00          9213         10675
          18.10          9234         10697
          18.20          9253         10721
          18.30          9265         10738
          18.40          9275         10748
          18.50          9285         10759
          18.60          9295         10769
          18.70          9305         10783
          18.80          9315         10793
          18.90          9325         10803
          19.00          9335         10813
          19.10          9345         10823
          19.20          9354         10832
          19.30          9364         10846
          19.40          9374         10856
          19.50          9384         10868
          19.60          9394         10878
          19.70          9404         10889
          19.80          9414         10901
          19.90          9424         10919
          20.00          9434         10929
Time course of concentrations written to file ./CaOscillate_Sat.cdat.
Time course of groups written to file ./CaOscillate_Sat.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./CaOscillate_Sat.cdat
CPU TIME: simulate 0.01 s.
Finished processing file CaOscillate_Sat.bngl.
CPU TIME: total 0.02 s.
BioNetGen version 2.7.0
Reading from file catalysis.bngl (level 0)
CPU TIME: version 0.00 s.
Read 17 parameters.
Read 1 compartments.
Read 5 molecule types.
Read 5 species.
Read 4 reaction rule(s).
Read 4 energy patterns(s).
Read 6 observable(s).
ACTION: generate_network( catalysis )
Iteration   0:     5 species      0 rxns  0.00e+00 CPU s
Iteration   1:     7 species      2 rxns  0.00e+00 CPU s
Iteration   2:     9 species      6 rxns  1.00e-02 CPU s
Iteration   3:    10 species     10 rxns  0.00e+00 CPU s
Iteration   4:    10 species     12 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Total   :    12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn
Wrote network in net format to ./catalysis.net.
CPU TIME: generate_network 0.01 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./catalysis.net.
Wrote network in net format to ./catalysis.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120
[simulation PID is: 15883]
run_network 3.0
Read 30 parameters from ./catalysis.net
@C::$ATP() is a fixed (boundaryCondition) variable
@C::$ADP() is a fixed (boundaryCondition) variable
Read 10 species from ./catalysis.net
Read 6 group(s) from ./catalysis.net
Read 0 function(s) from ./catalysis.net
Read 12 reaction(s) from ./catalysis.net
12 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./catalysis.cdat.
Time course of groups written to file ./catalysis.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./catalysis.cdat
CPU TIME: simulate 0.02 s.
Finished processing file catalysis.bngl.
CPU TIME: total 0.05 s.
BioNetGen version 2.7.0
Reading from file egfr_net.bngl (level 0)
Read 48 parameters.
Read 5 molecule types.
Read 6 species.
Read 23 reaction rule(s).
Read 15 observable(s).
ACTION: generate_network( egfr_net )
Iteration   0:     6 species      0 rxns  0.00e+00 CPU s
Iteration   1:     7 species      3 rxns  0.00e+00 CPU s
Iteration   2:     8 species      5 rxns  1.00e-02 CPU s
Iteration   3:    10 species      8 rxns  1.00e-02 CPU s
Iteration   4:    19 species     21 rxns  2.00e-02 CPU s
Iteration   5:    37 species     76 rxns  8.00e-02 CPU s
Iteration   6:    69 species    213 rxns  1.90e-01 CPU s
Iteration   7:   131 species    494 rxns  4.50e-01 CPU s
Iteration   8:   295 species   1260 rxns  1.36e+00 CPU s
Iteration   9:   356 species   3088 rxns  3.59e+00 CPU s
Iteration  10:   356 species   3749 rxns  1.62e+00 CPU s
Cumulative CPU time for each rule
Rule   1:    48 reactions 7.00e-02 CPU s 1.46e-03 CPU s/rxn
Rule   2:   600 reactions 1.79e+00 CPU s 2.98e-03 CPU s/rxn
Rule   3:   144 reactions 2.00e-01 CPU s 1.39e-03 CPU s/rxn
Rule   4:    96 reactions 1.30e-01 CPU s 1.35e-03 CPU s/rxn
Rule   5:   156 reactions 1.90e-01 CPU s 1.22e-03 CPU s/rxn
Rule   6:   104 reactions 1.20e-01 CPU s 1.15e-03 CPU s/rxn
Rule   7:    96 reactions 1.70e-01 CPU s 1.77e-03 CPU s/rxn
Rule   8:   104 reactions 1.30e-01 CPU s 1.25e-03 CPU s/rxn
Rule   9:   312 reactions 5.10e-01 CPU s 1.63e-03 CPU s/rxn
Rule  10:   312 reactions 5.40e-01 CPU s 1.73e-03 CPU s/rxn
Rule  11:   312 reactions 5.20e-01 CPU s 1.67e-03 CPU s/rxn
Rule  12:   208 reactions 3.50e-01 CPU s 1.68e-03 CPU s/rxn
Rule  13:   208 reactions 3.50e-01 CPU s 1.68e-03 CPU s/rxn
Rule  14:   208 reactions 4.30e-01 CPU s 2.07e-03 CPU s/rxn
Rule  15:   208 reactions 4.80e-01 CPU s 2.31e-03 CPU s/rxn
Rule  16:   208 reactions 4.00e-01 CPU s 1.92e-03 CPU s/rxn
Rule  17:   208 reactions 4.10e-01 CPU s 1.97e-03 CPU s/rxn
Rule  18:   208 reactions 4.00e-01 CPU s 1.92e-03 CPU s/rxn
Rule  19:     2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule  20:     2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule  21:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  22:     2 reactions 5.00e-02 CPU s 2.50e-02 CPU s/rxn
Rule  23:     2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Total   :  3749 reactions 7.33e+00 CPU s 1.96e-03 CPU s/rxn
Wrote network in net format to ./egfr_net.net.
CPU TIME: generate_network 7.44 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net.net.
Wrote network in net format to ./egfr_net.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50
[simulation PID is: 15885]
run_network 3.0
Read 48 parameters from ./egfr_net.net
Read 356 species from ./egfr_net.net
Read 15 group(s) from ./egfr_net.net
Read 0 function(s) from ./egfr_net.net
Read 3749 reaction(s) from ./egfr_net.net
3749 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net.cdat.
Time course of groups written to file ./egfr_net.gdat.
Propagation took 1.10e-01 CPU seconds
Program times:  0.13 CPU s 0.00 clock s 
Updating species concentrations from ./egfr_net.cdat
CPU TIME: simulate 0.26 s.
Finished processing file egfr_net.bngl.
CPU TIME: total 7.75 s.
BioNetGen version 2.7.0
Reading from file egfr_net_red.bngl (level 0)
Read 48 parameters.
Read 7 molecule types.
Read 7 species.
Read 14 observable(s).
Read 26 reaction rule(s).
ACTION: generate_network( egfr_net_red )
Iteration   0:     7 species      0 rxns  0.00e+00 CPU s
Iteration   1:    11 species      4 rxns  0.00e+00 CPU s
Iteration   2:    13 species     10 rxns  1.00e-02 CPU s
Iteration   3:    15 species     14 rxns  1.00e-02 CPU s
Iteration   4:    20 species     21 rxns  2.00e-02 CPU s
Iteration   5:    26 species     39 rxns  2.00e-02 CPU s
Iteration   6:    33 species     62 rxns  3.00e-02 CPU s
Iteration   7:    38 species     90 rxns  3.00e-02 CPU s
Iteration   8:    40 species    115 rxns  2.00e-02 CPU s
Iteration   9:    40 species    123 rxns  1.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   3:    12 reactions 2.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule   4:     8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   5:    12 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   6:     1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule   7:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     3 reactions 1.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule   9:     3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  10:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  11:     3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  12:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  13:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  14:     6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule  15:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  16:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  17:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  18:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  19:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  20:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  21:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  22:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule  23:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  24:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  25:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  26:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :   123 reactions 1.40e-01 CPU s 1.14e-03 CPU s/rxn
Wrote network in net format to ./egfr_net_red.net.
CPU TIME: generate_network 0.17 s.
Set concentration of species egf(r) to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10
[simulation PID is: 15887]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species egf(r) to value egf_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120
[simulation PID is: 15889]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 1.00e-02 CPU seconds
Program times:  0.01 CPU s 0.00 clock s 
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.01 s.
Finished processing file egfr_net_red.bngl.
CPU TIME: total 0.25 s.
BioNetGen version 2.7.0
Reading from file egfr_path.bngl (level 0)
Read 48 parameters.
Read 18 species.
Read 19 reaction rule(s).
Read 11 observable(s).
ACTION: generate_network( egfr_path )
Iteration   0:    18 species      0 rxns  0.00e+00 CPU s
Iteration   1:    18 species     37 rxns  2.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule   6:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   9:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  10:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  11:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  12:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  13:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  14:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule  15:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  16:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  17:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  18:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  19:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :    37 reactions 2.00e-02 CPU s 5.41e-04 CPU s/rxn
Wrote network in net format to ./egfr_path.net.
CPU TIME: generate_network 0.03 s.
Set concentration of species EGF() to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10
[simulation PID is: 15891]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.03 s.
Set concentration of species EGF() to value EGF_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120
[simulation PID is: 15893]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.03 s.
Finished processing file egfr_path.bngl.
CPU TIME: total 0.12 s.
BioNetGen version 2.7.0
Reading from file energy_example1.bngl (level 0)
CPU TIME: version 0.00 s.
Read 19 parameters.
Read 1 compartments.
Read 4 molecule types.
Read 4 species.
Read 6 energy patterns(s).
Read 11 observable(s).
Read 3 reaction rule(s).
ACTION: generate_network( energy_example1 )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     7 species      3 rxns  1.00e-02 CPU s
Iteration   2:    10 species     12 rxns  1.00e-02 CPU s
Iteration   3:    11 species     21 rxns  1.00e-02 CPU s
Iteration   4:    11 species     24 rxns  1.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     8 reactions 4.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule   3:     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :    24 reactions 4.00e-02 CPU s 1.67e-03 CPU s/rxn
Wrote network in net format to ./energy_example1.net.
CPU TIME: generate_network 0.04 s.
Wrote SBML to ./energy_example1_sbml.xml.
CPU TIME: writeSBML 0.00 s.
Finished processing file energy_example1.bngl.
CPU TIME: total 0.06 s.
BioNetGen version 2.7.0
Reading from file fceri_ji.bngl (level 0)
Read 26 parameters.
Read 4 species.
Adding pY as allowed state of component b of molecule Rec
Adding pY as allowed state of component g of molecule Rec
Adding pY as allowed state of component l of molecule Syk
Adding pY as allowed state of component a of molecule Syk
Read 19 reaction rule(s).
Read 10 observable(s).
ACTION: generate_network( fceri_ji )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     6 species      2 rxns  0.00e+00 CPU s
Iteration   2:     9 species      8 rxns  1.00e-02 CPU s
Iteration   3:    12 species     20 rxns  1.00e-02 CPU s
Iteration   4:    22 species     36 rxns  3.00e-02 CPU s
Iteration   5:    43 species    100 rxns  7.00e-02 CPU s
Iteration   6:    78 species    255 rxns  1.70e-01 CPU s
Iteration   7:   139 species    586 rxns  3.70e-01 CPU s
Iteration   8:   199 species   1190 rxns  7.40e-01 CPU s
Iteration   9:   303 species   1841 rxns  9.00e-01 CPU s
Iteration  10:   354 species   3143 rxns  1.60e+00 CPU s
Iteration  11:   354 species   3680 rxns  6.80e-01 CPU s
Cumulative CPU time for each rule
Rule   1:    48 reactions 9.00e-02 CPU s 1.87e-03 CPU s/rxn
Rule   2:  1152 reactions 1.28e+00 CPU s 1.11e-03 CPU s/rxn
Rule   3:   312 reactions 4.10e-01 CPU s 1.31e-03 CPU s/rxn
Rule   4:    36 reactions 6.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule   5:    24 reactions 7.00e-02 CPU s 2.92e-03 CPU s/rxn
Rule   6:   312 reactions 3.80e-01 CPU s 1.22e-03 CPU s/rxn
Rule   7:    36 reactions 6.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule   8:    24 reactions 7.00e-02 CPU s 2.92e-03 CPU s/rxn
Rule   9:   832 reactions 9.70e-01 CPU s 1.17e-03 CPU s/rxn
Rule  10:    48 reactions 1.10e-01 CPU s 2.29e-03 CPU s/rxn
Rule  11:    48 reactions 9.00e-02 CPU s 1.87e-03 CPU s/rxn
Rule  12:    64 reactions 1.40e-01 CPU s 2.19e-03 CPU s/rxn
Rule  13:    64 reactions 1.40e-01 CPU s 2.19e-03 CPU s/rxn
Rule  14:   156 reactions 1.40e-01 CPU s 8.97e-04 CPU s/rxn
Rule  15:   104 reactions 1.00e-01 CPU s 9.62e-04 CPU s/rxn
Rule  16:   208 reactions 2.30e-01 CPU s 1.11e-03 CPU s/rxn
Rule  17:   208 reactions 2.20e-01 CPU s 1.06e-03 CPU s/rxn
Rule  18:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  19:     2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn
Total   :  3680 reactions 4.58e+00 CPU s 1.24e-03 CPU s/rxn
Wrote network in net format to ./fceri_ji.net.
CPU TIME: generate_network 4.68 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./fceri_ji.net.
Wrote network in net format to ./fceri_ji.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10
[simulation PID is: 15895]
run_network 3.0
Read 26 parameters from ./fceri_ji.net
Read 354 species from ./fceri_ji.net
Read 10 group(s) from ./fceri_ji.net
Read 0 function(s) from ./fceri_ji.net
Read 3680 reaction(s) from ./fceri_ji.net
Removed 600 reactions with zero rate
3080 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./fceri_ji.cdat.
Time course of groups written to file ./fceri_ji.gdat.
Propagation took 6.70e-01 CPU seconds
Program times:  0.69 CPU s 1.00 clock s 
Updating species concentrations from ./fceri_ji.cdat
CPU TIME: simulate 0.79 s.
Finished processing file fceri_ji.bngl.
CPU TIME: total 5.51 s.
BioNetGen version 2.7.0
Reading from file test_continue.bngl (level 0)
Read 19 parameters.
Read 5 molecule types.
Read 4 species.
Read 6 observable(s).
Read 6 reaction rule(s).
ACTION: generate_network( test_continue )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     6 species      2 rxns  1.00e-02 CPU s
Iteration   2:     7 species      5 rxns  0.00e+00 CPU s
Iteration   3:     8 species      7 rxns  0.00e+00 CPU s
Iteration   4:    12 species     12 rxns  1.00e-02 CPU s
Iteration   5:    17 species     30 rxns  2.00e-02 CPU s
Iteration   6:    22 species     59 rxns  4.00e-02 CPU s
Iteration   7:    22 species     76 rxns  2.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:    20 reactions 4.00e-02 CPU s 2.00e-03 CPU s/rxn
Rule   3:     4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule   5:    24 reactions 3.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   6:    14 reactions 2.00e-02 CPU s 1.43e-03 CPU s/rxn
Total   :    76 reactions 1.00e-01 CPU s 1.32e-03 CPU s/rxn
Wrote network in net format to ./test_continue.net.
CPU TIME: generate_network 0.10 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 15897]
run_network 3.0
Read 19 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.04 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 15899]
run_network 3.0
Read 20 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.00 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 15901]
run_network 3.0
Read 21 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.03 s.
Reset species concentrations to "DEFAULT" saved values.
CPU TIME: resetConcentrations 0.00 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 496323043 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 15903]
run_network 3.0
Read 21 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 72563           
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 1.00e-02 CPU seconds
Program times:  0.01 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.04 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 285990429 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 15905]
run_network 3.0
Read 22 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 130170          
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 2.00e-02 CPU seconds
Program times:  0.02 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 1263376461 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 15907]
run_network 3.0
Read 23 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 107335          
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 2.00e-02 CPU seconds
Program times:  0.02 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.05 s.
Finished processing file test_continue.bngl.
CPU TIME: total 0.29 s.
+ echo 'Tests finished.'
Tests finished.
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bionetgen-2.7.0-2.fc37.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.APa8U1
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.7.0
+ DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/doc/bionetgen
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.7.0/README.md /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.7.0/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.7.0/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.7.0/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/doc/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.yF5jYa
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.7.0
+ LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/licenses/bionetgen
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/licenses/bionetgen
+ cp -pr bionetgen-BioNetGen-2.7.0/LICENSE /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64/usr/share/licenses/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bionetgen = 2.7.0-2.fc37 bionetgen(x86-64) = 2.7.0-2.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: bionetgen-perl-2.7.0-2.fc37.noarch
Provides: bionetgen-perl = 2.7.0-2.fc37 bundled(XML-TreePP) = 0.41 perl(Viz)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings)
Processing files: bionetgen-debugsource-2.7.0-2.fc37.x86_64
Provides: bionetgen-debugsource = 2.7.0-2.fc37 bionetgen-debugsource(x86-64) = 2.7.0-2.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bionetgen-debuginfo-2.7.0-2.fc37.x86_64
Provides: bionetgen-debuginfo = 2.7.0-2.fc37 bionetgen-debuginfo(x86-64) = 2.7.0-2.fc37 debuginfo(build-id) = 1f8ffa75b1e514b06f13ce7fa39deb8e8fbe61f9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bionetgen-debugsource(x86-64) = 2.7.0-2.fc37
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64
Wrote: /builddir/build/RPMS/bionetgen-perl-2.7.0-2.fc37.noarch.rpm
Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.7.0-2.fc37.x86_64.rpm
Wrote: /builddir/build/RPMS/bionetgen-2.7.0-2.fc37.x86_64.rpm
Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.7.0-2.fc37.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.EHrD7j
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.7.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0